Query 037065
Match_columns 412
No_of_seqs 175 out of 2045
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:16:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 1.6E-43 3.4E-48 342.6 22.1 363 18-390 2-397 (531)
2 PLN02172 flavin-containing mon 100.0 9.1E-38 2E-42 298.9 29.9 303 17-389 10-352 (461)
3 COG0492 TrxB Thioredoxin reduc 100.0 7.2E-36 1.6E-40 268.6 27.0 288 16-392 2-303 (305)
4 COG1249 Lpd Pyruvate/2-oxoglut 100.0 4.1E-36 8.9E-41 283.1 24.3 299 16-387 3-334 (454)
5 TIGR01292 TRX_reduct thioredox 100.0 4.4E-35 9.5E-40 269.7 26.9 282 18-389 1-300 (300)
6 COG2072 TrkA Predicted flavopr 100.0 4.2E-34 9E-39 272.7 32.4 351 15-370 6-389 (443)
7 PRK10262 thioredoxin reductase 100.0 1E-34 2.2E-39 269.0 27.4 294 15-393 4-318 (321)
8 TIGR01421 gluta_reduc_1 glutat 100.0 2E-34 4.3E-39 277.7 22.2 296 17-387 2-327 (450)
9 PRK05249 soluble pyridine nucl 100.0 5.5E-34 1.2E-38 277.1 23.5 304 14-387 2-334 (461)
10 PRK15317 alkyl hydroperoxide r 100.0 2.7E-33 5.9E-38 274.4 27.6 287 15-392 209-514 (517)
11 PLN02507 glutathione reductase 100.0 1.2E-33 2.6E-38 274.7 24.6 299 15-387 23-362 (499)
12 TIGR03140 AhpF alkyl hydropero 100.0 2.6E-33 5.6E-38 274.3 27.0 286 15-391 210-514 (515)
13 TIGR01424 gluta_reduc_2 glutat 100.0 6.6E-34 1.4E-38 274.4 21.5 297 17-387 2-325 (446)
14 PRK06370 mercuric reductase; V 100.0 7.4E-34 1.6E-38 275.8 21.8 298 16-388 4-334 (463)
15 PRK06116 glutathione reductase 100.0 1.6E-33 3.5E-38 272.6 23.4 296 17-388 4-328 (450)
16 COG1252 Ndh NADH dehydrogenase 100.0 9.5E-34 2.1E-38 260.3 20.0 287 17-393 3-335 (405)
17 TIGR03143 AhpF_homolog putativ 100.0 1.3E-32 2.9E-37 271.1 26.6 288 17-394 4-313 (555)
18 PRK13512 coenzyme A disulfide 100.0 7E-33 1.5E-37 266.5 22.2 280 17-387 1-311 (438)
19 PTZ00318 NADH dehydrogenase-li 100.0 2.4E-33 5.2E-38 268.6 18.0 286 17-393 10-351 (424)
20 PRK06416 dihydrolipoamide dehy 100.0 1.1E-32 2.3E-37 268.0 22.5 299 16-387 3-333 (462)
21 PRK08010 pyridine nucleotide-d 100.0 1.3E-32 2.8E-37 265.6 21.5 295 17-387 3-316 (441)
22 TIGR02053 MerA mercuric reduct 100.0 7.7E-33 1.7E-37 268.8 19.7 297 18-388 1-329 (463)
23 PLN02546 glutathione reductase 100.0 5E-33 1.1E-37 271.4 18.2 300 15-388 77-413 (558)
24 PRK06467 dihydrolipoamide dehy 100.0 2.1E-32 4.5E-37 265.2 21.9 298 16-388 3-337 (471)
25 KOG1399 Flavin-containing mono 100.0 9.1E-32 2E-36 252.5 24.4 301 17-388 6-332 (448)
26 TIGR01423 trypano_reduc trypan 100.0 3.9E-32 8.6E-37 262.4 21.8 300 16-387 2-350 (486)
27 PRK06292 dihydrolipoamide dehy 100.0 3.2E-32 6.9E-37 264.6 21.3 305 17-388 3-331 (460)
28 PRK14989 nitrite reductase sub 100.0 2.1E-32 4.5E-37 278.3 20.4 281 18-388 4-310 (847)
29 PRK14694 putative mercuric red 100.0 8.9E-32 1.9E-36 261.2 24.0 304 12-387 1-334 (468)
30 PRK04965 NADH:flavorubredoxin 100.0 1.3E-31 2.9E-36 253.5 23.9 279 18-388 3-302 (377)
31 PRK14727 putative mercuric red 100.0 1.2E-31 2.6E-36 260.6 23.7 301 16-388 15-346 (479)
32 PRK07818 dihydrolipoamide dehy 100.0 2E-31 4.3E-36 258.8 24.8 302 17-387 4-335 (466)
33 PTZ00058 glutathione reductase 100.0 1.7E-31 3.7E-36 260.5 24.1 305 15-388 46-432 (561)
34 PRK13748 putative mercuric red 100.0 1.5E-31 3.2E-36 266.2 23.5 299 17-387 98-427 (561)
35 PTZ00052 thioredoxin reductase 100.0 1.2E-31 2.7E-36 260.9 21.9 302 16-387 4-340 (499)
36 PRK09564 coenzyme A disulfide 100.0 8.9E-32 1.9E-36 260.6 20.6 284 19-388 2-317 (444)
37 PRK07845 flavoprotein disulfid 100.0 3.2E-31 6.9E-36 256.8 24.0 304 17-387 1-336 (466)
38 PRK12831 putative oxidoreducta 100.0 1.4E-31 3.1E-36 257.9 21.2 276 16-391 139-462 (464)
39 KOG0405 Pyridine nucleotide-di 100.0 1.5E-31 3.4E-36 232.0 18.7 303 14-388 17-350 (478)
40 PRK07846 mycothione reductase; 100.0 5.1E-31 1.1E-35 253.9 23.7 295 18-388 2-325 (451)
41 PRK06115 dihydrolipoamide dehy 100.0 5.6E-31 1.2E-35 255.1 23.9 301 17-388 3-338 (466)
42 TIGR01316 gltA glutamate synth 100.0 4.1E-31 8.9E-36 254.4 22.2 272 16-389 132-449 (449)
43 PRK07251 pyridine nucleotide-d 100.0 7.3E-31 1.6E-35 253.2 24.0 294 17-387 3-315 (438)
44 TIGR01350 lipoamide_DH dihydro 100.0 6.2E-31 1.3E-35 255.8 23.0 300 17-388 1-332 (461)
45 TIGR01438 TGR thioredoxin and 100.0 1.6E-30 3.5E-35 251.9 24.2 297 17-387 2-343 (484)
46 PRK06327 dihydrolipoamide dehy 100.0 6.7E-31 1.5E-35 255.4 21.6 301 17-388 4-347 (475)
47 PRK09754 phenylpropionate diox 100.0 2.8E-31 6E-36 252.7 18.2 282 17-388 3-309 (396)
48 PRK05976 dihydrolipoamide dehy 100.0 8.4E-31 1.8E-35 254.9 21.8 305 16-387 3-342 (472)
49 PRK11749 dihydropyrimidine deh 100.0 6.2E-31 1.3E-35 254.6 20.6 276 16-392 139-454 (457)
50 PRK09853 putative selenate red 100.0 3E-30 6.5E-35 260.8 23.1 289 16-392 538-844 (1019)
51 TIGR02374 nitri_red_nirB nitri 100.0 1.1E-30 2.4E-35 266.3 19.7 279 20-388 1-301 (785)
52 TIGR03169 Nterm_to_SelD pyridi 100.0 1.6E-30 3.4E-35 245.5 18.5 283 19-393 1-314 (364)
53 PTZ00153 lipoamide dehydrogena 100.0 4.6E-30 1E-34 253.5 22.4 307 17-388 116-495 (659)
54 PRK06912 acoL dihydrolipoamide 100.0 3.4E-30 7.4E-35 249.5 21.0 297 19-387 2-329 (458)
55 TIGR03452 mycothione_red mycot 100.0 8.9E-30 1.9E-34 245.6 22.2 295 17-388 2-328 (452)
56 PRK12779 putative bifunctional 100.0 1.5E-29 3.3E-34 259.8 23.4 274 17-391 306-628 (944)
57 PRK12770 putative glutamate sy 100.0 1.3E-28 2.8E-33 230.6 23.7 283 17-391 18-351 (352)
58 PRK12778 putative bifunctional 100.0 2.7E-29 5.9E-34 256.3 20.5 274 16-391 430-751 (752)
59 PRK12814 putative NADPH-depend 100.0 5.4E-29 1.2E-33 249.3 21.9 276 17-393 193-504 (652)
60 TIGR03315 Se_ygfK putative sel 100.0 6.4E-29 1.4E-33 252.5 21.1 286 17-390 537-840 (1012)
61 KOG0404 Thioredoxin reductase 100.0 9.5E-29 2.1E-33 202.0 17.5 292 16-390 7-319 (322)
62 PRK12810 gltD glutamate syntha 100.0 1.1E-28 2.4E-33 239.3 21.1 286 16-392 142-467 (471)
63 PRK12775 putative trifunctiona 100.0 2E-28 4.3E-33 253.8 23.9 292 17-409 430-774 (1006)
64 PF13738 Pyr_redox_3: Pyridine 100.0 5.1E-29 1.1E-33 215.8 13.9 188 21-214 1-202 (203)
65 PRK12769 putative oxidoreducta 100.0 1.1E-27 2.4E-32 241.0 24.8 275 17-391 327-653 (654)
66 TIGR01318 gltD_gamma_fam gluta 100.0 8.9E-28 1.9E-32 232.0 22.6 274 16-390 140-466 (467)
67 PRK12809 putative oxidoreducta 100.0 7.7E-27 1.7E-31 233.8 22.1 277 16-392 309-637 (639)
68 KOG1336 Monodehydroascorbate/f 99.9 8.6E-27 1.9E-31 212.4 16.7 264 17-372 74-354 (478)
69 KOG1335 Dihydrolipoamide dehyd 99.9 2.6E-26 5.5E-31 202.2 18.3 301 16-387 38-376 (506)
70 COG1251 NirB NAD(P)H-nitrite r 99.9 1.4E-26 3.1E-31 220.5 15.8 285 17-391 3-309 (793)
71 TIGR01317 GOGAT_sm_gam glutama 99.9 1.2E-25 2.6E-30 218.0 22.6 303 17-393 143-482 (485)
72 TIGR03385 CoA_CoA_reduc CoA-di 99.9 3.9E-26 8.5E-31 219.9 17.7 270 31-388 1-304 (427)
73 KOG2495 NADH-dehydrogenase (ub 99.9 6.4E-26 1.4E-30 202.9 17.2 291 15-392 53-399 (491)
74 PRK13984 putative oxidoreducta 99.9 5.4E-26 1.2E-30 227.5 18.4 275 16-391 282-603 (604)
75 PRK12771 putative glutamate sy 99.9 9.8E-26 2.1E-30 223.5 19.9 275 17-393 137-447 (564)
76 COG3634 AhpF Alkyl hydroperoxi 99.9 2.8E-25 6.2E-30 193.2 16.8 287 15-389 209-514 (520)
77 PLN02852 ferredoxin-NADP+ redu 99.9 3.4E-24 7.4E-29 204.7 24.3 314 17-391 26-423 (491)
78 TIGR01372 soxA sarcosine oxida 99.9 6.3E-24 1.4E-28 221.7 24.0 274 16-391 162-473 (985)
79 PF13434 K_oxygenase: L-lysine 99.9 1.2E-25 2.5E-30 207.2 8.5 217 17-246 2-250 (341)
80 KOG4716 Thioredoxin reductase 99.9 1.3E-23 2.8E-28 182.3 19.1 309 13-389 15-366 (503)
81 COG3486 IucD Lysine/ornithine 99.9 7E-23 1.5E-27 183.3 18.7 327 15-368 3-386 (436)
82 KOG0399 Glutamate synthase [Am 99.8 6.7E-21 1.5E-25 186.7 11.2 309 17-392 1785-2122(2142)
83 KOG1346 Programmed cell death 99.8 8.8E-20 1.9E-24 162.7 10.3 275 16-368 177-487 (659)
84 COG0446 HcaD Uncharacterized N 99.8 1E-18 2.2E-23 168.3 16.5 276 20-387 1-309 (415)
85 COG0493 GltD NADPH-dependent g 99.8 4.3E-19 9.4E-24 168.1 12.8 295 17-389 123-450 (457)
86 KOG1800 Ferredoxin/adrenodoxin 99.7 9.3E-17 2E-21 142.2 18.2 148 16-200 19-180 (468)
87 PTZ00188 adrenodoxin reductase 99.7 9.7E-16 2.1E-20 144.4 23.7 162 17-212 39-251 (506)
88 PRK06567 putative bifunctional 99.7 2.3E-16 4.9E-21 158.7 17.7 327 16-394 382-774 (1028)
89 KOG3851 Sulfide:quinone oxidor 99.7 9.1E-16 2E-20 132.9 16.2 299 15-406 37-375 (446)
90 COG1148 HdrA Heterodisulfide r 99.7 5.1E-15 1.1E-19 135.2 20.1 77 315-391 462-546 (622)
91 PRK09897 hypothetical protein; 99.7 1.3E-14 2.8E-19 140.8 22.5 189 17-213 1-246 (534)
92 COG4529 Uncharacterized protei 99.7 4.2E-14 9E-19 130.9 23.9 193 17-212 1-231 (474)
93 PF07992 Pyr_redox_2: Pyridine 99.7 1E-16 2.2E-21 138.5 6.4 119 19-158 1-130 (201)
94 KOG2755 Oxidoreductase [Genera 99.5 1.6E-13 3.6E-18 115.8 13.7 296 19-369 1-321 (334)
95 COG2081 Predicted flavoprotein 99.5 6E-14 1.3E-18 126.7 8.9 134 17-152 3-171 (408)
96 PF03486 HI0933_like: HI0933-l 99.4 1.8E-12 3.9E-17 122.3 11.4 133 18-151 1-169 (409)
97 PF13454 NAD_binding_9: FAD-NA 99.3 2.2E-11 4.8E-16 100.0 12.7 124 21-146 1-155 (156)
98 TIGR02032 GG-red-SF geranylger 99.3 1.3E-11 2.9E-16 113.1 10.9 129 18-148 1-148 (295)
99 PRK05329 anaerobic glycerol-3- 99.3 8.2E-11 1.8E-15 111.4 15.3 34 17-50 2-35 (422)
100 PRK04176 ribulose-1,5-biphosph 99.3 5.9E-11 1.3E-15 105.5 12.5 132 17-148 25-173 (257)
101 PRK10157 putative oxidoreducta 99.3 9.5E-11 2.1E-15 112.7 14.9 130 16-147 4-163 (428)
102 TIGR02023 BchP-ChlP geranylger 99.3 7.1E-11 1.5E-15 112.5 13.4 128 18-148 1-155 (388)
103 PRK10015 oxidoreductase; Provi 99.2 1.9E-10 4.1E-15 110.6 14.5 130 16-147 4-163 (429)
104 PRK06847 hypothetical protein; 99.2 3.7E-10 8.1E-15 107.2 15.9 131 17-149 4-164 (375)
105 TIGR00292 thiazole biosynthesi 99.2 2.1E-10 4.5E-15 101.7 13.1 131 16-146 20-168 (254)
106 COG0644 FixC Dehydrogenases (f 99.2 1.1E-10 2.4E-15 111.3 11.9 128 17-146 3-150 (396)
107 COG1635 THI4 Ribulose 1,5-bisp 99.2 1.9E-10 4.2E-15 95.2 11.0 130 17-146 30-176 (262)
108 PRK08773 2-octaprenyl-3-methyl 99.2 3.3E-10 7.1E-15 108.3 14.5 133 14-148 3-169 (392)
109 PRK08244 hypothetical protein; 99.2 4E-10 8.7E-15 110.8 15.2 130 17-148 2-159 (493)
110 COG3380 Predicted NAD/FAD-depe 99.2 1.4E-10 3.1E-15 99.0 10.0 121 18-145 2-157 (331)
111 PLN02463 lycopene beta cyclase 99.2 3.1E-10 6.8E-15 108.8 13.0 129 16-148 27-169 (447)
112 PRK08013 oxidoreductase; Provi 99.2 4.1E-10 8.9E-15 107.7 13.7 131 17-149 3-169 (400)
113 PRK06834 hypothetical protein; 99.2 7.1E-10 1.5E-14 108.3 15.5 130 17-148 3-156 (488)
114 PRK07190 hypothetical protein; 99.2 5.9E-10 1.3E-14 108.7 14.9 132 15-148 3-165 (487)
115 PRK06184 hypothetical protein; 99.2 7.8E-10 1.7E-14 109.0 15.3 128 17-148 3-168 (502)
116 PRK06617 2-octaprenyl-6-methox 99.1 4.8E-10 1E-14 106.3 13.1 130 17-149 1-161 (374)
117 PRK07333 2-octaprenyl-6-methox 99.1 6.3E-10 1.4E-14 106.8 13.7 130 17-148 1-167 (403)
118 PRK05714 2-octaprenyl-3-methyl 99.1 4.1E-10 8.9E-15 108.1 11.9 131 17-149 2-169 (405)
119 COG0654 UbiH 2-polyprenyl-6-me 99.1 7.6E-10 1.6E-14 105.4 13.3 130 17-148 2-162 (387)
120 PRK08020 ubiF 2-octaprenyl-3-m 99.1 7E-10 1.5E-14 106.0 12.7 133 15-149 3-170 (391)
121 PF01946 Thi4: Thi4 family; PD 99.1 6.6E-10 1.4E-14 92.8 10.5 129 17-146 17-163 (230)
122 TIGR01790 carotene-cycl lycope 99.1 8.5E-10 1.8E-14 105.3 13.0 128 19-148 1-141 (388)
123 PRK07494 2-octaprenyl-6-methox 99.1 9.3E-10 2E-14 105.0 13.1 134 13-148 3-167 (388)
124 PRK06183 mhpA 3-(3-hydroxyphen 99.1 2.4E-09 5.1E-14 106.4 16.4 132 16-149 9-175 (538)
125 PRK07364 2-octaprenyl-6-methox 99.1 2.4E-09 5.1E-14 103.2 15.1 132 16-149 17-182 (415)
126 PF01494 FAD_binding_3: FAD bi 99.1 4.2E-10 9E-15 105.9 9.5 130 18-148 2-172 (356)
127 PRK07045 putative monooxygenas 99.1 2.3E-09 4.9E-14 102.3 14.7 131 16-148 4-165 (388)
128 PRK06185 hypothetical protein; 99.1 1.6E-09 3.5E-14 104.1 13.7 134 13-148 2-169 (407)
129 PLN02697 lycopene epsilon cycl 99.1 1.9E-09 4.2E-14 105.0 13.4 128 17-148 108-248 (529)
130 PRK11445 putative oxidoreducta 99.1 2.9E-09 6.4E-14 99.9 13.8 128 17-149 1-158 (351)
131 PRK08163 salicylate hydroxylas 99.1 1.3E-09 2.7E-14 104.5 11.4 132 17-150 4-168 (396)
132 PLN00093 geranylgeranyl diphos 99.0 3.1E-09 6.8E-14 102.4 14.0 133 15-148 37-199 (450)
133 TIGR00275 flavoprotein, HI0933 99.0 2.4E-09 5.1E-14 102.1 12.9 128 21-150 1-162 (400)
134 PRK06753 hypothetical protein; 99.0 2.9E-09 6.3E-14 101.1 13.4 125 19-148 2-152 (373)
135 PF05834 Lycopene_cycl: Lycope 99.0 2.7E-09 5.8E-14 100.9 13.0 125 19-146 1-140 (374)
136 PRK07608 ubiquinone biosynthes 99.0 2.9E-09 6.2E-14 101.7 13.3 130 17-149 5-168 (388)
137 PRK05868 hypothetical protein; 99.0 5.7E-09 1.2E-13 98.7 14.8 130 17-149 1-161 (372)
138 PF01266 DAO: FAD dependent ox 99.0 9.6E-10 2.1E-14 103.6 9.6 61 88-150 144-205 (358)
139 PRK06126 hypothetical protein; 99.0 5.8E-09 1.3E-13 104.0 15.3 133 14-148 4-188 (545)
140 TIGR01988 Ubi-OHases Ubiquinon 99.0 2.7E-09 5.8E-14 101.8 12.2 128 19-148 1-163 (385)
141 TIGR02028 ChlP geranylgeranyl 99.0 5.2E-09 1.1E-13 99.8 14.0 129 18-148 1-160 (398)
142 PRK11259 solA N-methyltryptoph 99.0 4E-09 8.7E-14 100.2 13.2 64 88-153 146-209 (376)
143 PRK07588 hypothetical protein; 99.0 3.6E-09 7.8E-14 101.1 12.8 128 19-149 2-159 (391)
144 TIGR01984 UbiH 2-polyprenyl-6- 99.0 2.9E-09 6.2E-14 101.5 11.9 128 19-148 1-162 (382)
145 PRK09126 hypothetical protein; 99.0 6.4E-09 1.4E-13 99.4 14.2 130 17-148 3-167 (392)
146 TIGR01377 soxA_mon sarcosine o 99.0 4.7E-09 1E-13 99.9 12.9 62 88-151 142-203 (380)
147 PRK11728 hydroxyglutarate oxid 99.0 5.4E-09 1.2E-13 99.9 12.8 58 89-148 147-204 (393)
148 PRK08849 2-octaprenyl-3-methyl 99.0 6.6E-09 1.4E-13 98.9 13.3 131 17-149 3-168 (384)
149 PRK08132 FAD-dependent oxidore 99.0 1.3E-08 2.9E-13 101.4 15.9 131 16-148 22-185 (547)
150 TIGR01989 COQ6 Ubiquinone bios 99.0 5.1E-09 1.1E-13 101.3 12.6 132 18-149 1-184 (437)
151 PRK08243 4-hydroxybenzoate 3-m 99.0 6.5E-09 1.4E-13 99.3 13.1 128 17-149 2-164 (392)
152 PRK08850 2-octaprenyl-6-methox 99.0 7.1E-09 1.5E-13 99.4 13.4 130 17-148 4-168 (405)
153 PRK05732 2-octaprenyl-6-methox 99.0 7.4E-09 1.6E-13 99.1 13.3 130 17-148 3-169 (395)
154 PRK07236 hypothetical protein; 98.9 2.1E-08 4.5E-13 95.6 14.9 129 17-149 6-155 (386)
155 PRK06996 hypothetical protein; 98.9 1.3E-08 2.8E-13 97.3 12.3 131 13-146 7-172 (398)
156 COG0029 NadB Aspartate oxidase 98.9 2.8E-08 6.1E-13 92.6 13.8 129 19-148 9-196 (518)
157 TIGR03329 Phn_aa_oxid putative 98.9 1.5E-08 3.2E-13 98.8 12.5 63 88-153 180-242 (460)
158 TIGR02360 pbenz_hydroxyl 4-hyd 98.9 2E-08 4.3E-13 95.7 13.0 128 17-149 2-164 (390)
159 PRK06475 salicylate hydroxylas 98.9 1.8E-08 3.9E-13 96.5 12.6 130 18-149 3-168 (400)
160 PTZ00383 malate:quinone oxidor 98.9 1.3E-08 2.9E-13 98.7 11.0 62 88-150 208-275 (497)
161 TIGR03219 salicylate_mono sali 98.9 2.7E-08 5.7E-13 95.8 13.0 127 19-149 2-160 (414)
162 PF12831 FAD_oxidored: FAD dep 98.9 1.4E-09 3E-14 104.7 3.9 127 19-146 1-148 (428)
163 PRK08294 phenol 2-monooxygenas 98.9 6E-08 1.3E-12 97.6 15.5 133 16-148 31-210 (634)
164 PRK13369 glycerol-3-phosphate 98.9 3.6E-08 7.8E-13 97.0 13.5 61 89-151 153-218 (502)
165 TIGR03364 HpnW_proposed FAD de 98.8 2.6E-08 5.7E-13 94.2 11.9 61 88-154 142-203 (365)
166 PRK05192 tRNA uridine 5-carbox 98.8 1.5E-08 3.2E-13 99.2 10.1 126 17-147 4-156 (618)
167 PRK07538 hypothetical protein; 98.8 7.6E-08 1.6E-12 92.6 14.9 128 19-149 2-166 (413)
168 PRK12409 D-amino acid dehydrog 98.8 3.8E-08 8.2E-13 94.7 12.7 59 89-149 195-259 (410)
169 PRK06481 fumarate reductase fl 98.8 1E-07 2.2E-12 93.8 15.7 131 16-148 60-251 (506)
170 TIGR01813 flavo_cyto_c flavocy 98.8 8.7E-08 1.9E-12 93.0 15.0 130 19-149 1-193 (439)
171 PF00070 Pyr_redox: Pyridine n 98.8 5.3E-08 1.1E-12 70.1 10.0 79 19-132 1-79 (80)
172 TIGR01373 soxB sarcosine oxida 98.8 5.1E-08 1.1E-12 93.7 12.9 61 88-148 180-240 (407)
173 KOG2415 Electron transfer flav 98.8 3.5E-08 7.6E-13 89.4 10.7 133 16-148 75-256 (621)
174 COG0579 Predicted dehydrogenas 98.8 6E-08 1.3E-12 91.0 12.4 62 88-150 150-213 (429)
175 KOG2820 FAD-dependent oxidored 98.8 5.5E-08 1.2E-12 86.0 11.0 140 15-154 5-218 (399)
176 PF13450 NAD_binding_8: NAD(P) 98.8 8.9E-09 1.9E-13 71.2 4.9 47 22-68 1-47 (68)
177 PLN02985 squalene monooxygenas 98.8 6.9E-08 1.5E-12 94.7 12.8 135 13-149 39-209 (514)
178 PRK12266 glpD glycerol-3-phosp 98.8 7.7E-08 1.7E-12 94.6 12.7 59 91-151 155-219 (508)
179 TIGR01789 lycopene_cycl lycope 98.8 6.7E-08 1.4E-12 91.1 11.7 120 19-147 1-137 (370)
180 PLN02661 Putative thiazole syn 98.8 5E-08 1.1E-12 89.1 10.3 129 17-146 92-242 (357)
181 PRK13339 malate:quinone oxidor 98.8 1.3E-07 2.8E-12 91.6 13.7 63 88-151 181-250 (497)
182 PRK13800 putative oxidoreducta 98.7 1.4E-07 3E-12 99.0 14.5 37 15-51 11-47 (897)
183 PRK07121 hypothetical protein; 98.7 2.9E-07 6.4E-12 90.5 15.9 40 15-54 18-57 (492)
184 PRK07251 pyridine nucleotide-d 98.7 1.6E-07 3.5E-12 91.1 13.7 100 17-153 157-256 (438)
185 PRK01747 mnmC bifunctional tRN 98.7 1E-07 2.2E-12 97.1 12.5 61 88-151 405-466 (662)
186 PRK08401 L-aspartate oxidase; 98.7 1.6E-07 3.5E-12 91.5 13.1 131 17-150 1-177 (466)
187 PRK08274 tricarballylate dehyd 98.7 3.1E-07 6.8E-12 89.8 14.7 130 17-148 4-192 (466)
188 PRK11101 glpA sn-glycerol-3-ph 98.7 1.4E-07 3.1E-12 93.5 12.3 59 89-149 147-212 (546)
189 TIGR01350 lipoamide_DH dihydro 98.7 3.7E-07 8.1E-12 89.2 14.6 100 17-153 170-272 (461)
190 PRK05976 dihydrolipoamide dehy 98.7 4.4E-07 9.5E-12 88.8 15.0 103 17-154 180-285 (472)
191 PRK07804 L-aspartate oxidase; 98.7 4.3E-07 9.3E-12 90.0 14.8 134 15-149 14-211 (541)
192 PF01134 GIDA: Glucose inhibit 98.7 1.9E-07 4E-12 86.7 11.0 123 19-146 1-150 (392)
193 PF00890 FAD_binding_2: FAD bi 98.7 1.7E-07 3.7E-12 90.3 11.3 128 19-149 1-204 (417)
194 PRK00711 D-amino acid dehydrog 98.6 4.1E-07 8.9E-12 87.7 13.3 59 89-149 199-258 (416)
195 PLN02927 antheraxanthin epoxid 98.6 6.6E-07 1.4E-11 89.2 14.6 129 15-148 79-248 (668)
196 PF00070 Pyr_redox: Pyridine n 98.6 9.2E-08 2E-12 68.9 6.3 37 181-218 1-37 (80)
197 COG1249 Lpd Pyruvate/2-oxoglut 98.6 5.2E-07 1.1E-11 86.2 13.2 102 17-155 173-277 (454)
198 TIGR00551 nadB L-aspartate oxi 98.6 4.7E-07 1E-11 88.8 13.3 130 17-149 2-190 (488)
199 PRK04965 NADH:flavorubredoxin 98.6 4.3E-07 9.2E-12 86.3 12.5 100 17-152 141-241 (377)
200 PRK07057 sdhA succinate dehydr 98.6 1E-06 2.2E-11 88.2 15.7 138 13-150 8-213 (591)
201 PF04820 Trp_halogenase: Trypt 98.6 6E-08 1.3E-12 93.7 6.6 58 88-146 151-209 (454)
202 COG2509 Uncharacterized FAD-de 98.6 2.2E-06 4.7E-11 79.3 15.8 58 90-148 172-230 (486)
203 PRK06912 acoL dihydrolipoamide 98.6 7.7E-07 1.7E-11 86.7 13.8 100 17-153 170-271 (458)
204 TIGR00136 gidA glucose-inhibit 98.6 8.3E-07 1.8E-11 86.9 13.7 130 18-148 1-154 (617)
205 PRK06416 dihydrolipoamide dehy 98.6 7.6E-07 1.7E-11 87.0 13.5 100 17-153 172-275 (462)
206 PRK14694 putative mercuric red 98.6 6.9E-07 1.5E-11 87.3 13.1 99 17-153 178-276 (468)
207 PRK06452 sdhA succinate dehydr 98.6 1.2E-06 2.6E-11 87.3 14.7 131 16-148 4-198 (566)
208 PRK09754 phenylpropionate diox 98.6 6E-07 1.3E-11 85.8 12.0 99 17-152 144-243 (396)
209 PRK05945 sdhA succinate dehydr 98.6 6.2E-07 1.3E-11 89.7 12.3 131 17-149 3-198 (575)
210 TIGR02053 MerA mercuric reduct 98.6 1.1E-06 2.3E-11 86.0 13.8 101 17-154 166-270 (463)
211 PRK05249 soluble pyridine nucl 98.6 9.2E-07 2E-11 86.4 13.3 100 17-153 175-275 (461)
212 TIGR01320 mal_quin_oxido malat 98.6 8.6E-07 1.9E-11 86.4 12.8 62 88-150 175-242 (483)
213 PRK08958 sdhA succinate dehydr 98.6 8.6E-07 1.9E-11 88.6 13.1 133 17-149 7-207 (588)
214 PRK09078 sdhA succinate dehydr 98.6 5.6E-07 1.2E-11 90.2 11.7 135 16-150 11-214 (598)
215 PRK06069 sdhA succinate dehydr 98.6 1E-06 2.2E-11 88.2 13.5 40 15-54 3-45 (577)
216 TIGR01812 sdhA_frdA_Gneg succi 98.5 1.4E-06 3E-11 87.3 14.1 129 19-149 1-192 (566)
217 COG0578 GlpA Glycerol-3-phosph 98.5 1.1E-06 2.3E-11 84.6 12.6 57 92-150 165-227 (532)
218 PRK14727 putative mercuric red 98.5 1.3E-06 2.7E-11 85.7 13.5 98 18-153 189-286 (479)
219 PRK07573 sdhA succinate dehydr 98.5 1.4E-06 3.1E-11 87.8 14.1 36 17-52 35-70 (640)
220 PTZ00139 Succinate dehydrogena 98.5 7.5E-07 1.6E-11 89.5 11.9 134 16-150 28-231 (617)
221 PRK08275 putative oxidoreducta 98.5 2.7E-06 5.8E-11 84.8 15.7 133 16-149 8-201 (554)
222 PRK06116 glutathione reductase 98.5 1.6E-06 3.4E-11 84.4 13.7 101 17-153 167-268 (450)
223 COG1232 HemY Protoporphyrinoge 98.5 2.1E-06 4.6E-11 81.4 14.0 43 19-61 2-46 (444)
224 COG0665 DadA Glycine/D-amino a 98.5 6.2E-07 1.3E-11 85.6 10.7 61 88-150 153-214 (387)
225 PRK06370 mercuric reductase; V 98.5 1.2E-06 2.6E-11 85.6 12.9 100 17-153 171-274 (463)
226 PRK07803 sdhA succinate dehydr 98.5 1.5E-06 3.2E-11 87.6 13.8 38 16-53 7-44 (626)
227 PRK08010 pyridine nucleotide-d 98.5 1.5E-06 3.1E-11 84.5 13.3 100 17-153 158-257 (441)
228 PRK09564 coenzyme A disulfide 98.5 1.1E-06 2.5E-11 85.4 12.5 101 17-153 149-249 (444)
229 PRK08641 sdhA succinate dehydr 98.5 2.3E-06 5E-11 85.7 14.8 37 17-53 3-39 (589)
230 PTZ00367 squalene epoxidase; P 98.5 1E-06 2.2E-11 87.2 11.7 35 16-50 32-66 (567)
231 PRK12842 putative succinate de 98.5 1.6E-06 3.4E-11 86.8 13.2 43 12-54 4-46 (574)
232 COG2081 Predicted flavoprotein 98.5 5.5E-07 1.2E-11 82.2 8.9 150 180-330 4-168 (408)
233 PRK05257 malate:quinone oxidor 98.5 1.1E-06 2.3E-11 85.8 11.7 60 90-150 182-248 (494)
234 PRK13748 putative mercuric red 98.5 1.5E-06 3.2E-11 87.1 13.0 99 17-153 270-368 (561)
235 PLN00128 Succinate dehydrogena 98.5 1.1E-06 2.4E-11 88.3 12.0 135 16-150 49-252 (635)
236 PRK08255 salicylyl-CoA 5-hydro 98.5 4E-07 8.7E-12 93.9 9.1 117 19-148 2-141 (765)
237 TIGR01424 gluta_reduc_2 glutat 98.5 1.8E-06 4E-11 83.8 13.1 100 17-153 166-266 (446)
238 PF06039 Mqo: Malate:quinone o 98.5 1.9E-06 4E-11 80.5 12.2 62 89-151 179-247 (488)
239 PLN02464 glycerol-3-phosphate 98.5 1.4E-06 3E-11 87.7 12.3 62 88-149 229-297 (627)
240 PRK06327 dihydrolipoamide dehy 98.5 2E-06 4.4E-11 84.2 13.2 100 17-153 183-287 (475)
241 PRK08205 sdhA succinate dehydr 98.5 2.5E-06 5.5E-11 85.4 14.1 61 89-149 138-207 (583)
242 PRK06854 adenylylsulfate reduc 98.5 2.3E-06 4.9E-11 86.0 13.7 131 17-149 11-196 (608)
243 PRK13977 myosin-cross-reactive 98.5 3.9E-06 8.5E-11 81.6 14.5 40 17-56 22-65 (576)
244 PRK07818 dihydrolipoamide dehy 98.5 2.2E-06 4.7E-11 83.8 13.0 100 17-153 172-276 (466)
245 PRK06263 sdhA succinate dehydr 98.5 2.4E-06 5.3E-11 84.9 13.4 132 16-148 6-197 (543)
246 PRK07845 flavoprotein disulfid 98.5 2.6E-06 5.6E-11 83.2 13.4 99 18-153 178-277 (466)
247 PRK07846 mycothione reductase; 98.5 2.2E-06 4.8E-11 83.2 12.8 100 17-154 166-266 (451)
248 PRK06175 L-aspartate oxidase; 98.5 2E-06 4.4E-11 82.9 12.3 37 17-54 4-40 (433)
249 PLN02507 glutathione reductase 98.4 2.8E-06 6E-11 83.4 13.1 100 17-153 203-303 (499)
250 TIGR01421 gluta_reduc_1 glutat 98.4 3.4E-06 7.5E-11 81.9 13.6 101 17-153 166-268 (450)
251 PRK12835 3-ketosteroid-delta-1 98.4 5.4E-06 1.2E-10 82.9 14.9 39 16-54 10-48 (584)
252 PRK09231 fumarate reductase fl 98.4 3.8E-06 8.3E-11 84.0 13.8 38 17-54 4-43 (582)
253 PRK12839 hypothetical protein; 98.4 8.1E-06 1.8E-10 81.4 16.0 39 16-54 7-45 (572)
254 PRK06134 putative FAD-binding 98.4 8.5E-06 1.8E-10 81.6 16.2 40 15-54 10-49 (581)
255 PRK06115 dihydrolipoamide dehy 98.4 3.8E-06 8.2E-11 82.0 13.3 100 17-153 174-279 (466)
256 PRK08071 L-aspartate oxidase; 98.4 2.9E-06 6.4E-11 83.5 12.6 37 17-54 3-39 (510)
257 COG1233 Phytoene dehydrogenase 98.4 3.1E-07 6.8E-12 89.8 5.7 51 17-67 3-53 (487)
258 TIGR01176 fum_red_Fp fumarate 98.4 4.7E-06 1E-10 83.2 14.0 131 17-149 3-196 (580)
259 COG1252 Ndh NADH dehydrogenase 98.4 2E-06 4.2E-11 80.4 10.4 99 18-155 156-269 (405)
260 KOG1335 Dihydrolipoamide dehyd 98.4 1.7E-06 3.6E-11 78.0 9.4 147 17-203 211-368 (506)
261 PRK13512 coenzyme A disulfide 98.4 2E-06 4.4E-11 83.3 10.6 95 18-153 149-244 (438)
262 TIGR03452 mycothione_red mycot 98.4 4.8E-06 1E-10 80.9 13.0 99 17-153 169-268 (452)
263 TIGR01438 TGR thioredoxin and 98.4 5.6E-06 1.2E-10 81.0 13.5 99 17-153 180-282 (484)
264 PRK07843 3-ketosteroid-delta-1 98.4 3.3E-06 7.2E-11 84.1 12.1 42 13-54 3-44 (557)
265 TIGR03385 CoA_CoA_reduc CoA-di 98.4 3.6E-06 7.7E-11 81.4 12.0 100 17-153 137-236 (427)
266 PTZ00306 NADH-dependent fumara 98.4 6.4E-06 1.4E-10 88.7 14.8 40 15-54 407-446 (1167)
267 PTZ00052 thioredoxin reductase 98.4 6E-06 1.3E-10 81.1 13.4 98 18-153 183-281 (499)
268 PLN02815 L-aspartate oxidase 98.4 4.9E-06 1.1E-10 83.0 12.9 37 17-54 29-65 (594)
269 PRK08626 fumarate reductase fl 98.4 5.7E-06 1.2E-10 83.7 13.5 39 15-53 3-41 (657)
270 KOG2614 Kynurenine 3-monooxyge 98.4 1.6E-06 3.5E-11 79.3 8.5 37 17-53 2-38 (420)
271 PRK06467 dihydrolipoamide dehy 98.4 6.3E-06 1.4E-10 80.5 13.2 98 18-153 175-277 (471)
272 PRK06292 dihydrolipoamide dehy 98.3 7E-06 1.5E-10 80.2 13.3 101 17-154 169-272 (460)
273 TIGR01811 sdhA_Bsu succinate d 98.3 9.5E-06 2.1E-10 81.4 14.3 32 20-51 1-32 (603)
274 PRK14989 nitrite reductase sub 98.3 5.1E-06 1.1E-10 86.1 12.5 102 17-152 145-247 (847)
275 PRK07395 L-aspartate oxidase; 98.3 3.5E-06 7.7E-11 83.6 10.9 38 16-54 8-45 (553)
276 TIGR00137 gid_trmFO tRNA:m(5)U 98.3 1.6E-06 3.6E-11 81.8 7.9 36 18-53 1-36 (433)
277 PTZ00058 glutathione reductase 98.3 8.1E-06 1.7E-10 80.8 13.0 102 17-154 237-340 (561)
278 PRK05335 tRNA (uracil-5-)-meth 98.3 1.9E-06 4.1E-11 80.9 8.0 36 17-52 2-37 (436)
279 TIGR01423 trypano_reduc trypan 98.3 9.7E-06 2.1E-10 79.2 13.1 101 17-153 187-291 (486)
280 PRK12845 3-ketosteroid-delta-1 98.3 2.2E-05 4.9E-10 78.0 15.6 39 15-54 14-52 (564)
281 PRK07208 hypothetical protein; 98.3 1.2E-06 2.6E-11 86.1 6.6 44 16-59 3-46 (479)
282 KOG0029 Amine oxidase [Seconda 98.3 8.8E-07 1.9E-11 85.9 5.4 41 14-54 12-52 (501)
283 COG0446 HcaD Uncharacterized N 98.3 8.8E-06 1.9E-10 78.3 12.2 101 17-151 136-238 (415)
284 TIGR02374 nitri_red_nirB nitri 98.3 6.2E-06 1.4E-10 85.4 11.7 101 17-153 140-241 (785)
285 PTZ00153 lipoamide dehydrogena 98.3 1.2E-05 2.5E-10 80.9 13.1 103 17-154 312-431 (659)
286 PRK12843 putative FAD-binding 98.3 2.5E-05 5.4E-10 78.3 15.4 39 16-54 15-53 (578)
287 TIGR03378 glycerol3P_GlpB glyc 98.2 6.5E-06 1.4E-10 77.5 9.8 62 89-152 261-327 (419)
288 PLN02546 glutathione reductase 98.2 1.9E-05 4.1E-10 78.2 13.0 101 17-153 252-353 (558)
289 PRK07512 L-aspartate oxidase; 98.2 1.5E-05 3.3E-10 78.6 11.8 132 14-149 6-198 (513)
290 PRK09077 L-aspartate oxidase; 98.2 2.7E-05 5.9E-10 77.3 13.6 38 16-54 7-44 (536)
291 PRK12844 3-ketosteroid-delta-1 98.2 4.4E-05 9.6E-10 76.1 15.1 38 17-54 6-43 (557)
292 KOG2404 Fumarate reductase, fl 98.2 1.5E-05 3.4E-10 70.3 10.1 36 19-54 11-46 (477)
293 COG1053 SdhA Succinate dehydro 98.2 1.9E-05 4.1E-10 77.9 11.6 41 14-54 3-43 (562)
294 TIGR02061 aprA adenosine phosp 98.2 2.4E-05 5.2E-10 78.2 12.5 33 19-51 1-37 (614)
295 PTZ00318 NADH dehydrogenase-li 98.1 1.7E-05 3.6E-10 76.6 10.8 90 18-146 174-278 (424)
296 TIGR02485 CobZ_N-term precorri 98.1 2.7E-05 6E-10 75.3 12.3 58 90-147 122-182 (432)
297 COG2907 Predicted NAD/FAD-bind 98.1 1.3E-05 2.8E-10 71.6 8.9 41 17-58 8-48 (447)
298 PRK11883 protoporphyrinogen ox 98.1 3E-06 6.5E-11 82.7 5.4 41 18-58 1-43 (451)
299 TIGR01292 TRX_reduct thioredox 98.1 1.4E-05 2.9E-10 73.4 9.2 32 181-212 2-33 (300)
300 TIGR00031 UDP-GALP_mutase UDP- 98.1 5.2E-06 1.1E-10 77.7 6.0 39 17-55 1-39 (377)
301 TIGR02733 desat_CrtD C-3',4' d 98.1 5.2E-06 1.1E-10 81.8 6.3 48 18-65 2-49 (492)
302 COG0445 GidA Flavin-dependent 98.1 1E-05 2.2E-10 76.7 7.6 130 17-147 4-157 (621)
303 PRK07233 hypothetical protein; 98.1 4.5E-06 9.7E-11 81.0 5.3 40 19-58 1-40 (434)
304 TIGR00562 proto_IX_ox protopor 98.1 5.6E-06 1.2E-10 81.0 5.9 42 17-58 2-47 (462)
305 PLN02576 protoporphyrinogen ox 98.1 6.4E-06 1.4E-10 81.3 6.2 42 17-58 12-54 (496)
306 KOG1298 Squalene monooxygenase 98.1 1.2E-05 2.6E-10 72.7 7.2 35 15-49 43-77 (509)
307 PLN02568 polyamine oxidase 98.1 5.8E-06 1.2E-10 81.6 5.8 43 16-58 4-51 (539)
308 PLN02676 polyamine oxidase 98.1 7.8E-06 1.7E-10 80.0 6.6 49 16-64 25-74 (487)
309 COG0562 Glf UDP-galactopyranos 98.1 1.3E-05 2.8E-10 70.9 7.2 42 17-58 1-42 (374)
310 COG3075 GlpB Anaerobic glycero 98.0 2E-05 4.4E-10 69.8 8.4 33 17-49 2-34 (421)
311 PLN02268 probable polyamine ox 98.0 5.3E-06 1.1E-10 80.5 5.3 39 18-56 1-39 (435)
312 TIGR02730 carot_isom carotene 98.0 7.9E-06 1.7E-10 80.5 6.1 40 18-57 1-40 (493)
313 KOG1336 Monodehydroascorbate/f 98.0 4.2E-05 9.2E-10 71.4 10.3 106 17-156 213-319 (478)
314 COG3349 Uncharacterized conser 98.0 7.2E-06 1.6E-10 77.7 5.4 41 18-58 1-44 (485)
315 PRK10262 thioredoxin reductase 98.0 4.7E-05 1E-09 70.7 10.7 100 17-153 146-251 (321)
316 TIGR02734 crtI_fam phytoene de 98.0 8.3E-06 1.8E-10 80.6 5.8 38 20-57 1-38 (502)
317 KOG2852 Possible oxidoreductas 98.0 7.3E-05 1.6E-09 65.1 10.2 37 17-53 10-52 (380)
318 KOG2844 Dimethylglycine dehydr 98.0 2.5E-05 5.3E-10 75.5 8.1 61 87-148 183-243 (856)
319 PRK12416 protoporphyrinogen ox 98.0 8.4E-06 1.8E-10 79.7 5.0 42 17-58 1-48 (463)
320 TIGR03140 AhpF alkyl hydropero 97.9 9.8E-05 2.1E-09 73.1 11.3 94 17-153 352-453 (515)
321 TIGR03169 Nterm_to_SelD pyridi 97.9 8.8E-05 1.9E-09 70.2 10.5 92 18-151 146-244 (364)
322 PLN02529 lysine-specific histo 97.9 2.1E-05 4.6E-10 79.6 6.2 54 3-56 143-199 (738)
323 KOG2853 Possible oxidoreductas 97.9 0.00016 3.5E-09 64.6 10.8 35 16-50 85-123 (509)
324 TIGR02731 phytoene_desat phyto 97.9 2E-05 4.3E-10 76.9 5.5 38 19-56 1-38 (453)
325 PRK12770 putative glutamate sy 97.8 0.00013 2.7E-09 68.7 9.0 96 18-152 173-288 (352)
326 PF03486 HI0933_like: HI0933-l 97.8 4.9E-05 1.1E-09 72.2 6.2 139 181-330 2-167 (409)
327 KOG0685 Flavin-containing amin 97.8 3.9E-05 8.5E-10 71.6 5.3 42 16-57 20-62 (498)
328 COG3573 Predicted oxidoreducta 97.7 0.00047 1E-08 61.5 11.6 38 17-54 5-44 (552)
329 PTZ00363 rab-GDP dissociation 97.7 3E-05 6.6E-10 74.4 4.6 43 17-59 4-46 (443)
330 KOG2311 NAD/FAD-utilizing prot 97.7 0.00017 3.6E-09 67.3 8.9 132 16-148 27-186 (679)
331 PRK04176 ribulose-1,5-biphosph 97.7 0.00017 3.6E-09 64.3 8.9 189 179-391 25-256 (257)
332 TIGR01316 gltA glutamate synth 97.7 0.00018 3.8E-09 70.0 9.6 96 17-152 272-389 (449)
333 PLN02487 zeta-carotene desatur 97.7 4.7E-05 1E-09 75.4 5.7 41 16-56 74-114 (569)
334 COG1231 Monoamine oxidase [Ami 97.7 4.3E-05 9.3E-10 71.2 5.0 40 15-54 5-44 (450)
335 KOG2495 NADH-dehydrogenase (ub 97.7 5E-05 1.1E-09 69.8 5.1 101 17-154 218-335 (491)
336 PLN02328 lysine-specific histo 97.7 7.2E-05 1.6E-09 76.3 6.6 41 16-56 237-277 (808)
337 PRK15317 alkyl hydroperoxide r 97.7 0.00031 6.6E-09 69.7 11.0 94 17-153 351-452 (517)
338 TIGR02732 zeta_caro_desat caro 97.7 4.9E-05 1.1E-09 74.2 5.2 38 19-56 1-38 (474)
339 TIGR00292 thiazole biosynthesi 97.7 0.00024 5.2E-09 63.2 9.1 34 179-212 21-54 (254)
340 PRK12779 putative bifunctional 97.7 0.0001 2.2E-09 77.5 7.7 36 177-212 304-339 (944)
341 PRK12837 3-ketosteroid-delta-1 97.7 5.7E-05 1.2E-09 74.6 5.4 37 17-54 7-43 (513)
342 PRK12834 putative FAD-binding 97.6 7.3E-05 1.6E-09 74.6 5.4 39 16-54 3-43 (549)
343 PF13434 K_oxygenase: L-lysine 97.6 0.00045 9.7E-09 64.3 9.5 126 16-146 189-339 (341)
344 PRK11749 dihydropyrimidine deh 97.5 0.00094 2E-08 65.2 12.0 96 17-151 273-388 (457)
345 PRK12831 putative oxidoreducta 97.5 0.00099 2.1E-08 65.0 11.6 34 17-50 281-314 (464)
346 PRK06847 hypothetical protein; 97.5 0.0004 8.7E-09 65.9 8.6 147 179-332 4-166 (375)
347 TIGR02462 pyranose_ox pyranose 97.5 0.00013 2.9E-09 71.5 5.2 40 18-57 1-40 (544)
348 PF00732 GMC_oxred_N: GMC oxid 97.5 8E-05 1.7E-09 68.2 3.4 34 18-51 1-35 (296)
349 PLN02612 phytoene desaturase 97.5 0.00015 3.2E-09 72.5 5.4 39 17-55 93-131 (567)
350 PF07992 Pyr_redox_2: Pyridine 97.5 6.1E-05 1.3E-09 64.6 2.1 32 181-212 1-32 (201)
351 PRK01438 murD UDP-N-acetylmura 97.5 0.00017 3.8E-09 70.8 5.6 34 17-50 16-49 (480)
352 KOG0042 Glycerol-3-phosphate d 97.4 0.00016 3.5E-09 68.4 4.9 39 16-54 66-104 (680)
353 KOG1276 Protoporphyrinogen oxi 97.4 0.00019 4.1E-09 66.2 5.0 43 15-57 9-53 (491)
354 PF01134 GIDA: Glucose inhibit 97.4 0.00028 6E-09 65.9 6.2 138 181-327 1-150 (392)
355 KOG2665 Predicted FAD-dependen 97.4 0.0013 2.9E-08 58.3 9.9 39 16-54 47-87 (453)
356 PRK09853 putative selenate red 97.4 0.0004 8.6E-09 72.5 7.9 36 177-212 537-572 (1019)
357 PLN02976 amine oxidase 97.4 0.00019 4E-09 76.4 5.5 44 16-59 692-735 (1713)
358 PLN03000 amine oxidase 97.4 0.00023 5.1E-09 72.8 6.0 43 17-59 184-226 (881)
359 PLN02463 lycopene beta cyclase 97.4 0.00051 1.1E-08 66.3 8.0 137 180-330 29-170 (447)
360 PRK06834 hypothetical protein; 97.3 0.0011 2.4E-08 65.0 9.3 148 180-331 4-158 (488)
361 PRK02106 choline dehydrogenase 97.3 0.00024 5.2E-09 71.1 4.8 36 15-50 3-39 (560)
362 KOG3855 Monooxygenase involved 97.3 0.0022 4.7E-08 59.1 10.3 39 16-54 35-79 (481)
363 PF13738 Pyr_redox_3: Pyridine 97.3 0.00027 5.8E-09 60.8 4.5 30 183-212 1-31 (203)
364 PLN02172 flavin-containing mon 97.3 0.00083 1.8E-08 65.3 8.1 36 177-212 8-43 (461)
365 PRK12778 putative bifunctional 97.3 0.0043 9.3E-08 64.5 13.8 34 17-50 570-604 (752)
366 PRK12814 putative NADPH-depend 97.3 0.0062 1.4E-07 62.1 14.6 95 17-152 323-439 (652)
367 TIGR01789 lycopene_cycl lycope 97.3 0.00055 1.2E-08 64.7 6.6 31 182-212 2-34 (370)
368 PRK12810 gltD glutamate syntha 97.3 0.0021 4.5E-08 63.0 10.8 104 17-151 281-401 (471)
369 COG1206 Gid NAD(FAD)-utilizing 97.3 0.001 2.3E-08 59.3 7.5 36 18-53 4-39 (439)
370 PF06100 Strep_67kDa_ant: Stre 97.3 0.0053 1.1E-07 58.5 12.6 38 18-55 3-44 (500)
371 PLN02852 ferredoxin-NADP+ redu 97.2 0.00087 1.9E-08 65.1 7.5 36 177-212 24-61 (491)
372 KOG1399 Flavin-containing mono 97.2 0.0031 6.8E-08 60.4 11.0 35 178-212 5-39 (448)
373 KOG2960 Protein involved in th 97.2 0.00017 3.7E-09 60.0 2.1 129 17-146 76-232 (328)
374 TIGR03143 AhpF_homolog putativ 97.2 0.0024 5.1E-08 63.9 10.6 95 17-153 143-249 (555)
375 PLN02661 Putative thiazole syn 97.2 0.0088 1.9E-07 55.2 12.9 37 176-212 89-126 (357)
376 PRK08773 2-octaprenyl-3-methyl 97.2 0.00097 2.1E-08 63.8 7.1 33 180-212 7-39 (392)
377 TIGR01372 soxA sarcosine oxida 97.1 0.0027 5.9E-08 67.8 10.6 94 17-153 317-414 (985)
378 PRK06567 putative bifunctional 97.1 0.0012 2.5E-08 68.4 7.5 36 177-212 381-416 (1028)
379 COG0654 UbiH 2-polyprenyl-6-me 97.1 0.00084 1.8E-08 64.0 6.1 145 180-329 3-162 (387)
380 TIGR03315 Se_ygfK putative sel 97.1 0.001 2.2E-08 69.8 6.9 35 178-212 536-570 (1012)
381 PRK12775 putative trifunctiona 97.1 0.00085 1.9E-08 71.3 6.4 35 178-212 429-463 (1006)
382 PRK09126 hypothetical protein; 97.1 0.0021 4.7E-08 61.4 8.6 33 180-212 4-36 (392)
383 TIGR01318 gltD_gamma_fam gluta 97.1 0.0059 1.3E-07 59.7 11.6 95 17-151 282-399 (467)
384 PRK12769 putative oxidoreducta 97.1 0.0067 1.5E-07 62.0 12.4 95 17-151 468-585 (654)
385 PRK05192 tRNA uridine 5-carbox 97.1 0.0023 5E-08 63.4 8.4 32 181-212 6-37 (618)
386 PRK05868 hypothetical protein; 97.0 0.0033 7.1E-08 59.6 9.0 33 180-212 2-34 (372)
387 PRK07236 hypothetical protein; 96.9 0.0031 6.8E-08 60.1 8.2 35 178-212 5-39 (386)
388 PRK01438 murD UDP-N-acetylmura 96.9 0.0018 3.9E-08 63.7 6.5 36 177-212 14-49 (480)
389 PF13454 NAD_binding_9: FAD-NA 96.9 0.013 2.9E-07 47.9 10.3 30 183-212 1-35 (156)
390 PRK05714 2-octaprenyl-3-methyl 96.8 0.0059 1.3E-07 58.6 9.3 32 181-212 4-35 (405)
391 TIGR01790 carotene-cycl lycope 96.8 0.0052 1.1E-07 58.7 8.8 31 182-212 2-32 (388)
392 KOG0405 Pyridine nucleotide-di 96.8 0.005 1.1E-07 55.5 7.8 105 15-154 187-291 (478)
393 PRK08163 salicylate hydroxylas 96.8 0.0031 6.7E-08 60.4 7.1 34 179-212 4-37 (396)
394 KOG3923 D-aspartate oxidase [A 96.8 0.0027 6E-08 55.9 5.9 33 17-49 3-42 (342)
395 KOG1346 Programmed cell death 96.8 0.0055 1.2E-07 56.5 7.8 100 17-153 347-452 (659)
396 PF05834 Lycopene_cycl: Lycope 96.8 0.0025 5.3E-08 60.5 5.8 133 182-330 2-143 (374)
397 TIGR00275 flavoprotein, HI0933 96.8 0.0058 1.3E-07 58.5 8.3 30 183-212 1-30 (400)
398 TIGR01317 GOGAT_sm_gam glutama 96.7 0.0025 5.5E-08 62.5 5.9 35 178-212 142-176 (485)
399 PRK07608 ubiquinone biosynthes 96.7 0.0049 1.1E-07 58.8 7.6 32 181-212 7-38 (388)
400 PRK07333 2-octaprenyl-6-methox 96.7 0.0044 9.6E-08 59.4 7.1 146 181-331 3-169 (403)
401 COG2303 BetA Choline dehydroge 96.7 0.0016 3.5E-08 64.6 4.1 35 16-50 6-40 (542)
402 PRK08849 2-octaprenyl-3-methyl 96.6 0.0053 1.2E-07 58.5 7.3 32 181-212 5-36 (384)
403 TIGR01810 betA choline dehydro 96.6 0.0017 3.7E-08 64.7 3.9 32 19-50 1-33 (532)
404 PRK06753 hypothetical protein; 96.6 0.0073 1.6E-07 57.3 8.0 32 181-212 2-33 (373)
405 PRK08020 ubiF 2-octaprenyl-3-m 96.6 0.0068 1.5E-07 57.9 7.8 33 180-212 6-38 (391)
406 COG0492 TrxB Thioredoxin reduc 96.6 0.025 5.4E-07 51.6 10.9 94 17-152 143-240 (305)
407 PLN02785 Protein HOTHEAD 96.6 0.0025 5.4E-08 63.8 4.6 33 17-50 55-87 (587)
408 TIGR01988 Ubi-OHases Ubiquinon 96.6 0.0054 1.2E-07 58.4 6.7 31 182-212 2-32 (385)
409 PRK10157 putative oxidoreducta 96.6 0.0051 1.1E-07 59.5 6.5 32 181-212 7-38 (428)
410 PTZ00188 adrenodoxin reductase 96.6 0.008 1.7E-07 57.9 7.6 35 178-212 38-73 (506)
411 PRK08850 2-octaprenyl-6-methox 96.6 0.0075 1.6E-07 57.9 7.6 32 180-211 5-36 (405)
412 PRK07588 hypothetical protein; 96.5 0.0067 1.5E-07 58.0 7.0 32 181-212 2-33 (391)
413 PRK06184 hypothetical protein; 96.5 0.011 2.4E-07 58.6 8.7 33 180-212 4-36 (502)
414 COG2072 TrkA Predicted flavopr 96.5 0.037 8.1E-07 53.6 11.8 34 179-212 8-42 (443)
415 PRK09897 hypothetical protein; 96.5 0.013 2.9E-07 57.7 8.8 33 180-212 2-36 (534)
416 KOG4254 Phytoene desaturase [C 96.4 0.0029 6.2E-08 59.0 3.5 40 15-54 12-51 (561)
417 PRK07364 2-octaprenyl-6-methox 96.4 0.015 3.2E-07 56.1 8.6 34 179-212 18-51 (415)
418 PRK12809 putative oxidoreducta 96.4 0.039 8.4E-07 56.3 11.8 95 17-151 451-568 (639)
419 PRK07045 putative monooxygenas 96.3 0.017 3.6E-07 55.2 8.5 33 180-212 6-38 (388)
420 PF00743 FMO-like: Flavin-bind 96.3 0.0099 2.1E-07 58.8 7.0 34 179-212 1-34 (531)
421 TIGR01984 UbiH 2-polyprenyl-6- 96.3 0.012 2.5E-07 56.1 7.0 31 182-212 2-33 (382)
422 PRK08244 hypothetical protein; 96.2 0.013 2.8E-07 57.9 7.5 32 181-212 4-35 (493)
423 PRK14106 murD UDP-N-acetylmura 96.2 0.0072 1.6E-07 58.9 5.5 34 17-50 5-38 (450)
424 PRK13984 putative oxidoreducta 96.2 0.049 1.1E-06 55.3 11.5 31 17-47 418-454 (604)
425 TIGR03862 flavo_PP4765 unchara 96.2 0.023 5E-07 53.4 8.4 60 88-151 83-144 (376)
426 PLN02697 lycopene epsilon cycl 96.2 0.017 3.6E-07 57.1 7.8 132 180-329 109-248 (529)
427 TIGR00136 gidA glucose-inhibit 96.2 0.0077 1.7E-07 59.7 5.3 32 181-212 2-33 (617)
428 COG1251 NirB NAD(P)H-nitrite r 96.2 0.011 2.3E-07 58.8 6.1 101 17-153 145-246 (793)
429 PRK06617 2-octaprenyl-6-methox 96.1 0.007 1.5E-07 57.5 4.8 32 181-212 3-34 (374)
430 PRK08013 oxidoreductase; Provi 96.1 0.013 2.8E-07 56.2 6.6 33 180-212 4-36 (400)
431 TIGR01470 cysG_Nterm siroheme 96.1 0.01 2.2E-07 50.9 5.2 36 177-212 7-42 (205)
432 KOG3851 Sulfide:quinone oxidor 96.1 0.014 3.1E-07 52.0 6.0 38 300-338 114-153 (446)
433 PRK07190 hypothetical protein; 96.1 0.025 5.4E-07 55.6 8.5 33 180-212 6-38 (487)
434 TIGR03219 salicylate_mono sali 96.1 0.022 4.9E-07 54.8 8.0 32 181-212 2-34 (414)
435 COG0445 GidA Flavin-dependent 96.0 0.028 6E-07 54.1 8.1 32 181-212 6-37 (621)
436 KOG1238 Glucose dehydrogenase/ 96.0 0.0064 1.4E-07 59.6 3.9 38 15-52 55-93 (623)
437 PRK06183 mhpA 3-(3-hydroxyphen 96.0 0.02 4.4E-07 57.1 7.6 34 179-212 10-43 (538)
438 PLN00093 geranylgeranyl diphos 96.0 0.071 1.5E-06 51.8 11.1 34 179-212 39-72 (450)
439 TIGR02032 GG-red-SF geranylger 96.0 0.02 4.3E-07 52.1 6.9 32 181-212 2-33 (295)
440 PF01210 NAD_Gly3P_dh_N: NAD-d 95.9 0.0077 1.7E-07 49.4 3.4 32 19-50 1-32 (157)
441 KOG4716 Thioredoxin reductase 95.9 0.016 3.4E-07 52.2 5.4 100 18-154 199-304 (503)
442 TIGR02028 ChlP geranylgeranyl 95.9 0.036 7.7E-07 53.1 8.4 32 181-212 2-33 (398)
443 PRK10015 oxidoreductase; Provi 95.9 0.0091 2E-07 57.7 4.3 32 181-212 7-38 (429)
444 PRK05329 anaerobic glycerol-3- 95.9 0.067 1.4E-06 51.3 10.0 89 21-146 219-316 (422)
445 COG0493 GltD NADPH-dependent g 95.8 0.011 2.5E-07 56.9 4.7 37 176-212 120-156 (457)
446 PRK06475 salicylate hydroxylas 95.8 0.022 4.7E-07 54.7 6.6 33 180-212 3-35 (400)
447 PRK08401 L-aspartate oxidase; 95.8 0.088 1.9E-06 51.5 10.9 33 180-212 2-34 (466)
448 PRK11728 hydroxyglutarate oxid 95.8 0.023 4.9E-07 54.4 6.5 32 181-212 4-37 (393)
449 PRK12771 putative glutamate sy 95.8 0.16 3.4E-06 51.2 12.7 95 17-151 267-381 (564)
450 PRK07494 2-octaprenyl-6-methox 95.7 0.021 4.6E-07 54.4 6.2 33 180-212 8-40 (388)
451 KOG0404 Thioredoxin reductase 95.7 0.028 6.1E-07 47.6 6.0 109 179-331 8-126 (322)
452 TIGR02023 BchP-ChlP geranylger 95.7 0.058 1.3E-06 51.5 8.8 31 181-211 2-32 (388)
453 KOG0399 Glutamate synthase [Am 95.6 0.031 6.8E-07 58.0 6.9 38 175-212 1781-1818(2142)
454 PRK05562 precorrin-2 dehydroge 95.6 0.029 6.2E-07 48.4 5.8 35 176-210 22-56 (223)
455 KOG2755 Oxidoreductase [Genera 95.6 0.05 1.1E-06 47.3 7.0 26 306-331 81-106 (334)
456 COG0644 FixC Dehydrogenases (f 95.6 0.014 3.1E-07 55.7 4.3 33 181-213 5-37 (396)
457 PF00996 GDI: GDP dissociation 95.6 0.02 4.2E-07 54.8 5.1 44 17-60 4-47 (438)
458 PF12831 FAD_oxidored: FAD dep 95.5 0.008 1.7E-07 58.1 2.2 31 182-212 2-32 (428)
459 KOG2311 NAD/FAD-utilizing prot 95.5 0.075 1.6E-06 50.2 8.3 32 181-212 30-61 (679)
460 PRK06996 hypothetical protein; 95.4 0.02 4.4E-07 54.8 4.9 33 180-212 12-48 (398)
461 TIGR02352 thiamin_ThiO glycine 95.4 0.04 8.7E-07 51.3 6.7 64 86-151 132-196 (337)
462 PF02737 3HCDH_N: 3-hydroxyacy 95.4 0.019 4E-07 48.2 3.9 32 19-50 1-32 (180)
463 PRK08243 4-hydroxybenzoate 3-m 95.3 0.046 1E-06 52.2 6.9 33 180-212 3-35 (392)
464 COG3486 IucD Lysine/ornithine 95.3 0.26 5.7E-06 45.9 11.2 47 105-154 292-344 (436)
465 PRK05732 2-octaprenyl-6-methox 95.3 0.043 9.2E-07 52.5 6.7 32 180-211 4-38 (395)
466 PRK06126 hypothetical protein; 95.3 0.07 1.5E-06 53.5 8.3 34 179-212 7-40 (545)
467 TIGR03197 MnmC_Cterm tRNA U-34 95.3 0.041 8.8E-07 52.4 6.3 63 87-152 131-194 (381)
468 COG1148 HdrA Heterodisulfide r 95.2 0.035 7.6E-07 52.5 5.5 35 178-212 123-157 (622)
469 PRK06481 fumarate reductase fl 95.2 0.16 3.6E-06 50.2 10.7 33 180-212 62-94 (506)
470 PLN02927 antheraxanthin epoxid 95.2 0.07 1.5E-06 54.0 7.9 36 177-212 79-114 (668)
471 PF13450 NAD_binding_8: NAD(P) 95.2 0.017 3.8E-07 39.7 2.6 29 184-212 1-29 (68)
472 PRK08132 FAD-dependent oxidore 95.2 0.063 1.4E-06 53.8 7.6 34 179-212 23-56 (547)
473 PF04820 Trp_halogenase: Trypt 95.2 0.036 7.7E-07 54.0 5.6 50 282-331 157-213 (454)
474 PRK06718 precorrin-2 dehydroge 95.1 0.044 9.5E-07 46.9 5.5 35 176-210 7-41 (202)
475 COG0569 TrkA K+ transport syst 95.1 0.028 6E-07 49.1 4.3 32 19-50 2-33 (225)
476 TIGR01470 cysG_Nterm siroheme 95.1 0.033 7.1E-07 47.8 4.7 34 17-50 9-42 (205)
477 TIGR01989 COQ6 Ubiquinone bios 95.1 0.048 1E-06 53.0 6.3 32 181-212 2-37 (437)
478 PF02558 ApbA: Ketopantoate re 95.1 0.021 4.5E-07 46.4 3.3 31 182-212 1-31 (151)
479 PRK11445 putative oxidoreducta 95.1 0.036 7.9E-07 52.1 5.2 31 181-212 3-33 (351)
480 PRK06719 precorrin-2 dehydroge 95.0 0.035 7.5E-07 45.4 4.2 33 17-49 13-45 (157)
481 TIGR02360 pbenz_hydroxyl 4-hyd 94.9 0.064 1.4E-06 51.2 6.6 33 180-212 3-35 (390)
482 PRK07538 hypothetical protein; 94.9 0.09 1.9E-06 50.7 7.7 32 181-212 2-33 (413)
483 PRK07819 3-hydroxybutyryl-CoA 94.9 0.035 7.6E-07 50.4 4.5 34 17-50 5-38 (286)
484 PF13241 NAD_binding_7: Putati 94.9 0.018 3.8E-07 43.4 2.0 34 17-50 7-40 (103)
485 PF03721 UDPG_MGDP_dh_N: UDP-g 94.8 0.027 5.8E-07 47.5 3.2 33 19-51 2-34 (185)
486 PRK02705 murD UDP-N-acetylmura 94.8 0.032 7E-07 54.5 4.2 33 19-51 2-34 (459)
487 COG3634 AhpF Alkyl hydroperoxi 94.7 0.59 1.3E-05 42.6 11.3 96 17-153 354-455 (520)
488 COG4529 Uncharacterized protei 94.6 0.27 5.9E-06 46.9 9.6 33 180-212 2-37 (474)
489 PF13241 NAD_binding_7: Putati 94.6 0.025 5.5E-07 42.6 2.3 37 176-212 4-40 (103)
490 COG3380 Predicted NAD/FAD-depe 94.6 0.15 3.2E-06 44.8 7.2 32 181-212 3-34 (331)
491 PRK06718 precorrin-2 dehydroge 94.5 0.053 1.2E-06 46.4 4.5 33 17-49 10-42 (202)
492 PRK06129 3-hydroxyacyl-CoA deh 94.5 0.05 1.1E-06 50.1 4.5 33 18-50 3-35 (308)
493 PRK05335 tRNA (uracil-5-)-meth 94.4 0.037 8E-07 52.6 3.5 33 180-212 3-35 (436)
494 TIGR00551 nadB L-aspartate oxi 94.3 0.26 5.6E-06 48.6 9.4 31 181-212 4-34 (488)
495 PF00899 ThiF: ThiF family; I 94.3 0.056 1.2E-06 43.0 3.9 34 17-50 2-36 (135)
496 PF02558 ApbA: Ketopantoate re 94.3 0.067 1.5E-06 43.4 4.4 31 20-50 1-31 (151)
497 PRK09260 3-hydroxybutyryl-CoA 94.3 0.063 1.4E-06 48.9 4.7 33 18-50 2-34 (288)
498 PF01488 Shikimate_DH: Shikima 94.1 0.099 2.1E-06 41.6 4.9 35 16-50 11-46 (135)
499 PRK06249 2-dehydropantoate 2-r 94.1 0.075 1.6E-06 49.1 4.8 33 18-50 6-38 (313)
500 PRK08293 3-hydroxybutyryl-CoA 94.1 0.07 1.5E-06 48.6 4.6 34 17-50 3-36 (287)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=1.6e-43 Score=342.58 Aligned_cols=363 Identities=30% Similarity=0.531 Sum_probs=221.0
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCC---------CCCCCeeeecCCccccCCCCCCCCCCCCCC
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKH---------RTYDRLKLHLPKQFCELPLFGFPENFPKYP 88 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (412)
++|+|||||++||++|..|.+.|++++++|+++.+||.|+. ..|+.+..+.++..+.++.+|+|+.++.|+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 68999999999999999999999999999999999999974 358899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCc--ccccceEEEEEEcCC---CCcEEEEEcc----eEEEeCEEEEeeCCCCCCCCCC--CCC
Q 037065 89 TKRQFIAYIESYASHFKIQ--PKFKQAVQTALFDHA---SGFWRVQTQD----SEYISKWLVVATGENAEPVFPD--VVG 157 (412)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~---~~~~~v~~~~----~~~~~d~vIlAtG~~~~p~~p~--~~g 157 (412)
+..++.+|++.+++++++. ++++++|+++++.++ .++|+|++.+ .+..+|+||+|||..+.|.+|. +||
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G 161 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG 161 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence 9999999999999999886 589999999998764 2579998865 4567999999999999999995 999
Q ss_pred CCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHH--H----H
Q 037065 158 LDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIA--M----A 231 (412)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~--~----~ 231 (412)
++.|.+.++|+.++.....+.+|+|+|||+|.||+|+|..++...++|++..|++.|++|+.....-+.+.. . +
T Consensus 162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~ 241 (531)
T PF00743_consen 162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSF 241 (531)
T ss_dssp GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---------------------------
T ss_pred hhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999875322222221 1 1
Q ss_pred HHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcCceEEeCCeEEec
Q 037065 232 LLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGGVKEITKNGARFT 311 (412)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~i~~~~v~~~ 311 (412)
+...+|....+...+....... ..+.+++. | ......+.|..++.+...+..++|++..+|.++++++|++.
T Consensus 242 l~~~lp~~~~~~~~~~~l~~~~-~~~~~gl~-p------~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~v~F~ 313 (531)
T PF00743_consen 242 LQKNLPESLSNWLLEKKLNKRF-DHENYGLK-P------KHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENSVIFE 313 (531)
T ss_dssp -----------------------------------------------------------------EE-EEEE-SSEEEET
T ss_pred cccccccccccccccccccccc-cccccccc-c------ccccccccccccccccccccccccccccccccccccccccc
Confidence 2222333222222111100000 11222321 1 11233456888999999999999999888999999999999
Q ss_pred CCcEe-cccEEEEcCCCCCCCCCccccCccCCCCCCCCCCCCCCC-C--CCCCeEEEeeecCc---cccchhhHHHHHHH
Q 037065 312 DGQEK-EIDAIILATGYKSNVPTWLKECDFFTKDGMPKTPFPNGW-K--GENGLYTVGFTRRG---LQGTALDADKIAQD 384 (412)
Q Consensus 312 ~g~~~-~~D~vi~atG~~p~~~~~l~~~~~~~~~G~~~~~~~~~~-~--~~~~iya~Gd~~~~---~~~a~~~~~~~a~~ 384 (412)
||+.+ ++|.||+||||+.+.+ +|++.-+...++.+. -+...+ . ..|++.++|-+... ...+..||+.+|+-
T Consensus 314 DGs~~e~vD~II~~TGY~~~fp-FL~~~~~~~~~~~~~-LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a~v 391 (531)
T PF00743_consen 314 DGSTEEDVDVIIFCTGYKFSFP-FLDESLIKVDDNRVR-LYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAARV 391 (531)
T ss_dssp TSEEEEE-SEEEE---EE---T-TB-TTTT-S-SSSSS-EETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccc-ccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence 99875 7999999999999984 566543322233322 112222 1 35899999987642 22678888888887
Q ss_pred HHHhhc
Q 037065 385 ISEQWR 390 (412)
Q Consensus 385 i~~~~~ 390 (412)
+.+...
T Consensus 392 ~sG~~~ 397 (531)
T PF00743_consen 392 FSGRVK 397 (531)
T ss_dssp HTTSS-
T ss_pred cccccc
Confidence 776543
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=9.1e-38 Score=298.94 Aligned_cols=303 Identities=24% Similarity=0.463 Sum_probs=236.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCC--------------------CCCCeeeecCCccccCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHR--------------------TYDRLKLHLPKQFCELP 76 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~--------------------~~~~~~~~~~~~~~~~~ 76 (412)
.++|+|||||++||++|..|++.|++++|+|+++.+||.|... +|..++.+.|+..+.+.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 5799999999999999999999999999999999999999642 46777788888888888
Q ss_pred CCCCCCC-------CCCCCCHHHHHHHHHHHHHHcCCc--ccccceEEEEEEcCCCCcEEEEEcc-----eEEEeCEEEE
Q 037065 77 LFGFPEN-------FPKYPTKRQFIAYIESYASHFKIQ--PKFKQAVQTALFDHASGFWRVQTQD-----SEYISKWLVV 142 (412)
Q Consensus 77 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~v~~~~-----~~~~~d~vIl 142 (412)
.++++.. .+.||+..++.+|++++++++++. ++++++|++++..+ +.|+|++.+ .+..||+||+
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~~~~~~~~d~VIv 167 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGGFSKDEIFDAVVV 167 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCCceEEEEcCEEEE
Confidence 8877542 245889999999999999999988 78999999999865 789998753 2567999999
Q ss_pred eeCCCCCCCCCCCCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccC
Q 037065 143 ATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFG 222 (412)
Q Consensus 143 AtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~ 222 (412)
|||..+.|.+|.++|.+.+.+..+|+..+.....+++|+|+|||+|.+|+|+|..|...+.+|++++|+.. ... .
T Consensus 168 AtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~-~~~---~- 242 (461)
T PLN02172 168 CNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASE-SDT---Y- 242 (461)
T ss_pred eccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc-ccc---c-
Confidence 99988899999999999999999999999888888999999999999999999999999999999998761 000 0
Q ss_pred CChhhHHHHHHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcCceE
Q 037065 223 FSTFGIAMALLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGGVKE 302 (412)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~ 302 (412)
... .....++.+...|..
T Consensus 243 ----------------------------------~~~----------------------------~~~~~~v~~~~~I~~ 260 (461)
T PLN02172 243 ----------------------------------EKL----------------------------PVPQNNLWMHSEIDT 260 (461)
T ss_pred ----------------------------------ccC----------------------------cCCCCceEECCcccc
Confidence 000 001122333223444
Q ss_pred EeC-CeEEecCCcEecccEEEEcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCC-CC-CCCeEEEeeecCccc--cchh
Q 037065 303 ITK-NGARFTDGQEKEIDAIILATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGW-KG-ENGLYTVGFTRRGLQ--GTAL 376 (412)
Q Consensus 303 i~~-~~v~~~~g~~~~~D~vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~-~~-~~~iya~Gd~~~~~~--~a~~ 376 (412)
+.. +.|.+.||+.+++|.||+|||++++. .+|+..+. ..++..+..-+...+ .. .|+++++|-...... .+..
T Consensus 261 ~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~-pfL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~ 339 (461)
T PLN02172 261 AHEDGSIVFKNGKVVYADTIVHCTGYKYHF-PFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEI 339 (461)
T ss_pred eecCCeEEECCCCCccCCEEEECCcCCccc-cccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCchhHHH
Confidence 433 45889999999999999999999998 46665543 222333321222222 33 489999997653333 7788
Q ss_pred hHHHHHHHHHHhh
Q 037065 377 DADKIAQDISEQW 389 (412)
Q Consensus 377 ~~~~~a~~i~~~~ 389 (412)
||+.+|+.+.+.+
T Consensus 340 Qa~~~a~v~sG~~ 352 (461)
T PLN02172 340 QSKWVAAVLSGRV 352 (461)
T ss_pred HHHHHHHHHcCCC
Confidence 9999998887665
No 3
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-36 Score=268.58 Aligned_cols=288 Identities=22% Similarity=0.319 Sum_probs=226.7
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
.++||+||||||+||+||+.+.+.+++++||+.....|+..... ....++| .++.-....++.+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~-------------~~venyp---g~~~~~~g~~L~~ 65 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKT-------------TDVENYP---GFPGGILGPELME 65 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccc-------------eeecCCC---CCccCCchHHHHH
Confidence 37899999999999999999999999944444444444321110 0111222 2223356788999
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCCCC
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGS 175 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~ 175 (412)
.+++++..+++++.. ..|.+++..+ +.|.|.+.+.++++++||+||| ..+..|.+|+..++.++.+++|..|+.
T Consensus 66 ~~~~~a~~~~~~~~~-~~v~~v~~~~--~~F~v~t~~~~~~ak~vIiAtG--~~~~~~~~~~e~e~~g~gv~yc~~cdg- 139 (305)
T COG0492 66 QMKEQAEKFGVEIVE-DEVEKVELEG--GPFKVKTDKGTYEAKAVIIATG--AGARKLGVPGEEEFEGKGVSYCATCDG- 139 (305)
T ss_pred HHHHHHhhcCeEEEE-EEEEEEeecC--ceEEEEECCCeEEEeEEEECcC--CcccCCCCCcchhhcCCceEEeeecCc-
Confidence 999999999999875 5677777655 3899999998899999999999 777888877777888899999999988
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHHHHhhcC
Q 037065 176 EFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMANITLGN 255 (412)
Q Consensus 176 ~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (412)
.+++|+|+|||+|.+|+|.|..|.+.+.+|++++|++ .+-+..
T Consensus 140 ~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~-~~ra~~------------------------------------ 182 (305)
T COG0492 140 FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRD-EFRAEE------------------------------------ 182 (305)
T ss_pred cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCc-ccCcCH------------------------------------
Confidence 8889999999999999999999999999999999999 221111
Q ss_pred ccccCCCCCCCCCccccccCCCcccccchhhhhhccC-CEEEEcC--ceEEeC---CeEEecCCc----EecccEEEEcC
Q 037065 256 TDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSG-KIKVVGG--VKEITK---NGARFTDGQ----EKEIDAIILAT 325 (412)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~~--v~~i~~---~~v~~~~g~----~~~~D~vi~at 325 (412)
...+.+++. ++.++.+ |.++.. .++.+.+.+ .+.+|-++.++
T Consensus 183 ----------------------------~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~i 234 (305)
T COG0492 183 ----------------------------ILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAI 234 (305)
T ss_pred ----------------------------HHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEec
Confidence 012333333 6777766 888877 367776632 78999999999
Q ss_pred CCCCCCCCccccCccCCCCCCCCCCCCCCCCCCCCeEEEeeecCc----cccchhhHHHHHHHHHHhhccc
Q 037065 326 GYKSNVPTWLKECDFFTKDGMPKTPFPNGWKGENGLYTVGFTRRG----LQGTALDADKIAQDISEQWRKI 392 (412)
Q Consensus 326 G~~p~~~~~l~~~~~~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~----~~~a~~~~~~~a~~i~~~~~~~ 392 (412)
|..|+. .+++..+..++.|++.++. .++||+|||||+||++.. +..|..+|..+|.++.+++...
T Consensus 235 G~~p~~-~~~~~~~~~~~~g~I~v~~-~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 235 GHLPNT-ELLKGLGVLDENGYIVVDE-EMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESL 303 (305)
T ss_pred CCCCch-HHHhhccccCCCCcEEcCC-CcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhhc
Confidence 999998 7888887789999999995 489999999999999944 5589999999999999988654
No 4
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=4.1e-36 Score=283.07 Aligned_cols=299 Identities=20% Similarity=0.276 Sum_probs=217.7
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc-ccCCCCCCCeeeecCCcccc-CCC----CCCCCCCCCCCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS-LWKHRTYDRLKLHLPKQFCE-LPL----FGFPENFPKYPT 89 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~-~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~ 89 (412)
.+||++|||+||+|..+|.++++.|.++.++|+...+|| +.+..|.|...+......+. ... +-+..... ..+
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~-~id 81 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP-KID 81 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC-CcC
Confidence 479999999999999999999999999999999966666 56777777765443332221 110 10000000 122
Q ss_pred HHHHH-----------HHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc---eEEEeCEEEEeeCCCCCCCCCCC
Q 037065 90 KRQFI-----------AYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD---SEYISKWLVVATGENAEPVFPDV 155 (412)
Q Consensus 90 ~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~d~vIlAtG~~~~p~~p~~ 155 (412)
..++. ..++.+.+..+++++.+. ..-++ + .. |...+ ++++++++||||| ++|..|++
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~-a~f~~--~--~~--v~V~~~~~~~~~a~~iiIATG--S~p~~~~~ 152 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGE-ARFVD--P--HT--VEVTGEDKETITADNIIIATG--SRPRIPPG 152 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEE-EEECC--C--CE--EEEcCCCceEEEeCEEEEcCC--CCCcCCCC
Confidence 22222 233444555566654442 11111 1 22 44444 7899999999999 99999988
Q ss_pred CCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHh
Q 037065 156 VGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRW 235 (412)
Q Consensus 156 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (412)
++.+.. .++.+.+..... ..+++++|||+|.+|+|+|..++.+|.+||++.|++ ++||.++. +.+..+
T Consensus 153 ~~~~~~--~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~-~iLp~~D~-----ei~~~~--- 220 (454)
T COG1249 153 PGIDGA--RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD-RILPGEDP-----EISKEL--- 220 (454)
T ss_pred CCCCCC--eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCCcCCH-----HHHHHH---
Confidence 887752 244444434444 679999999999999999999999999999999999 89998765 433332
Q ss_pred cchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC----eEE
Q 037065 236 FPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN----GAR 309 (412)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~----~v~ 309 (412)
.+.+++.++++..+ +.++... .+.
T Consensus 221 --------------------------------------------------~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~ 250 (454)
T COG1249 221 --------------------------------------------------TKQLEKGGVKILLNTKVTAVEKKDDGVLVT 250 (454)
T ss_pred --------------------------------------------------HHHHHhCCeEEEccceEEEEEecCCeEEEE
Confidence 34445567888776 5555432 266
Q ss_pred ecCCc--EecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHH
Q 037065 310 FTDGQ--EKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIA 382 (412)
Q Consensus 310 ~~~g~--~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a 382 (412)
+.+|+ .+++|.|++|+|++||++.| |++.|+ .+++|++.+| .+++|++|+|||+||+..++. .|..||+.++
T Consensus 251 ~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa 329 (454)
T COG1249 251 LEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAA 329 (454)
T ss_pred EecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHHHHHHHH
Confidence 67776 68999999999999999766 899999 8888999999 788888999999999986654 8999999999
Q ss_pred HHHHH
Q 037065 383 QDISE 387 (412)
Q Consensus 383 ~~i~~ 387 (412)
++|.+
T Consensus 330 ~~i~g 334 (454)
T COG1249 330 ENIAG 334 (454)
T ss_pred HHHhC
Confidence 99998
No 5
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=4.4e-35 Score=269.68 Aligned_cols=282 Identities=25% Similarity=0.348 Sum_probs=211.3
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAYI 97 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
+||+|||||++|+++|..|++.|++|+|||+.. .||.|.... ....++.+ .......++..++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~------~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF------PEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC------CCCCChHHHHHHH
Confidence 589999999999999999999999999999876 555443210 00111111 1124556888999
Q ss_pred HHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCCCCC
Q 037065 98 ESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSE 176 (412)
Q Consensus 98 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~ 176 (412)
++.++++++++++ ++|++++..+ ..|.+.+.+ .++.||+||+||| ..|..|.+||...+....++.........
T Consensus 64 ~~~~~~~gv~~~~-~~v~~v~~~~--~~~~v~~~~~~~~~~d~liiAtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~ 138 (300)
T TIGR01292 64 KEQAVKFGAEIIY-EEVIKVDLSD--RPFKVKTGDGKEYTAKAVIIATG--ASARKLGIPGEDEFLGRGVSYCATCDGPF 138 (300)
T ss_pred HHHHHHcCCeEEE-EEEEEEEecC--CeeEEEeCCCCEEEeCEEEECCC--CCcccCCCCChhhcCCccEEEeeecChhh
Confidence 9999999999987 7899998866 667787766 6899999999999 77888888887655444454444444444
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHHHHhhcCc
Q 037065 177 FKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMANITLGNT 256 (412)
Q Consensus 177 ~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (412)
..+++++|||+|.+|+|+|..+.+.+.+|+++.+++. +...
T Consensus 139 ~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~-~~~~-------------------------------------- 179 (300)
T TIGR01292 139 FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK-FRAE-------------------------------------- 179 (300)
T ss_pred cCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc-cCcC--------------------------------------
Confidence 5688999999999999999999999999999999872 1100
Q ss_pred cccCCCCCCCCCccccccCCCcccccchhhhhhccC-CEEEEcC--ceEEeCCe----EEec---CC--cEecccEEEEc
Q 037065 257 DQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSG-KIKVVGG--VKEITKNG----ARFT---DG--QEKEIDAIILA 324 (412)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~~--v~~i~~~~----v~~~---~g--~~~~~D~vi~a 324 (412)
....+.+++. +++++.+ +.++..++ +.+. ++ .++++|.+++|
T Consensus 180 --------------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a 233 (300)
T TIGR01292 180 --------------------------KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIA 233 (300)
T ss_pred --------------------------HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEe
Confidence 0012334444 7777755 66766442 3332 23 47899999999
Q ss_pred CCCCCCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecC-c---cccchhhHHHHHHHHHHhh
Q 037065 325 TGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRR-G---LQGTALDADKIAQDISEQW 389 (412)
Q Consensus 325 tG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~-~---~~~a~~~~~~~a~~i~~~~ 389 (412)
+|++|+. .+++.. + .+++|++.++. ++++++|+||++|||+. . ...|+.||+.+|.+|.+++
T Consensus 234 ~G~~~~~-~~l~~~-~~~~~~g~i~v~~-~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 234 IGHEPNT-ELLKGL-LELDEGGYIVTDE-GMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred eCCCCCh-HHHHHh-heecCCCcEEECC-CCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 9999997 567766 5 57789998884 57799999999999996 2 3389999999999998764
No 6
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-34 Score=272.70 Aligned_cols=351 Identities=27% Similarity=0.425 Sum_probs=254.9
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCC-eEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLP-SLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQF 93 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~-v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
..++||+|||||++||++|.+|.+.|.. ++|+|++..+||.|+.++|+++.++.|+..+.+++.+++ +...++....+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~ 84 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEI 84 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCcccH
Confidence 3478999999999999999999999998 999999999999999999999999999999999999986 33445555557
Q ss_pred HHHHHHHHHHcCCc--ccccceEEEEEEcCCCCcEEEEEcce-E--EEeCEEEEeeCCCCCCCCCCCCCCCCCccceeec
Q 037065 94 IAYIESYASHFKIQ--PKFKQAVQTALFDHASGFWRVQTQDS-E--YISKWLVVATGENAEPVFPDVVGLDKFNGHVLHT 168 (412)
Q Consensus 94 ~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~v~~~~~-~--~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~ 168 (412)
.+|+..+++++++. +.+++.|..++++.+...|+|+++++ + +.+|+||+|||..+.|.+|.++|.+.|.+.++|+
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS 164 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHS 164 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEch
Confidence 77777777777655 46677787788888878999999882 2 6799999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHH
Q 037065 169 SKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLM 248 (412)
Q Consensus 169 ~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (412)
.++.....+++|+|+|||+|.||++++..|.+.+++|++++|++.+++|....+..... ...+.++++...........
T Consensus 165 ~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 243 (443)
T COG2072 165 ADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGG-RLALRRALPAGWALRRGRVL 243 (443)
T ss_pred hcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHH-HHHHhhhCccceehhhhhhh
Confidence 99999999999999999999999999999999999999999999999887775443332 22222223332211111111
Q ss_pred HH------------------------HhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC-ceEE
Q 037065 249 AN------------------------ITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG-VKEI 303 (412)
Q Consensus 249 ~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-v~~i 303 (412)
.. .........++ +....+.+ ....++...+...........+.+++. +..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~--~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~~~ 320 (443)
T COG2072 244 DALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGV-REDLGPDY--APGDGRLVPDGDLFEAGASGDVEVVTEIIDRF 320 (443)
T ss_pred hhhhhhhcccccCCCchHHHHHhhhhhhhccccccCh-HhhcCCCC--Cccccccccccchhhhhhhcccceeecccccc
Confidence 00 00000011111 00111110 122223455666677777788888777 6666
Q ss_pred eCCeEEecCCcEecccEEEEcCCCCCCCCCccccCccCC--CCCCCCCCCCCCCCCCCCeEEEeeecCc
Q 037065 304 TKNGARFTDGQEKEIDAIILATGYKSNVPTWLKECDFFT--KDGMPKTPFPNGWKGENGLYTVGFTRRG 370 (412)
Q Consensus 304 ~~~~v~~~~g~~~~~D~vi~atG~~p~~~~~l~~~~~~~--~~G~~~~~~~~~~~~~~~iya~Gd~~~~ 370 (412)
....+...++.+++.|.++.+||+..+.-..++..-..+ ..............+.||+|.++.....
T Consensus 321 ~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~pn~~~~~~~~~~ 389 (443)
T COG2072 321 TEGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDPWDKDAPLAYKGLALSGGPNLFLIGGPTKA 389 (443)
T ss_pred CCcceecCCCccccceEEEecCCCchhheeeeccccccccccccccceeccccccCCCceEEecCccCC
Confidence 666677777777999999999999996311111111111 1122222334456788999999977644
No 7
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=1e-34 Score=269.02 Aligned_cols=294 Identities=19% Similarity=0.269 Sum_probs=218.9
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFI 94 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
...+||+||||||+||++|..|++.|+++++||+. ..||.+... ...+.++.. .......++.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~----------~~~~~~~~~------~~~~~~~~~~ 66 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTT----------TEVENWPGD------PNDLTGPLLM 66 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecC----------ceECCCCCC------CCCCCHHHHH
Confidence 34789999999999999999999999999999964 455543221 001111111 1234567788
Q ss_pred HHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCCC
Q 037065 95 AYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSG 174 (412)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~ 174 (412)
+++.+....++.++..+ +|+.++... +.|++..+...+.||+||+||| +.|..|++||.+.+..+.++.+..++.
T Consensus 67 ~~~~~~~~~~~~~~~~~-~v~~v~~~~--~~~~v~~~~~~~~~d~vilAtG--~~~~~~~i~g~~~~~~~~v~~~~~~~~ 141 (321)
T PRK10262 67 ERMHEHATKFETEIIFD-HINKVDLQN--RPFRLTGDSGEYTCDALIIATG--ASARYLGLPSEEAFKGRGVSACATCDG 141 (321)
T ss_pred HHHHHHHHHCCCEEEee-EEEEEEecC--CeEEEEecCCEEEECEEEECCC--CCCCCCCCCCHHHcCCCcEEEeecCCH
Confidence 89999888888777654 577787765 6777776566899999999999 778888899877665566676666666
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHHHHhhc
Q 037065 175 SEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMANITLG 254 (412)
Q Consensus 175 ~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (412)
....+++++|||+|.+|+|+|..|.+.+.+|+++.|++. + +.+ . .
T Consensus 142 ~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~-~-~~~-~-----~--------------------------- 186 (321)
T PRK10262 142 FFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG-F-RAE-K-----I--------------------------- 186 (321)
T ss_pred HHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc-c-CCC-H-----H---------------------------
Confidence 667789999999999999999999999999999999872 2 100 0 0
Q ss_pred CccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC-----eEEecCC------cEecccEE
Q 037065 255 NTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN-----GARFTDG------QEKEIDAI 321 (412)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~-----~v~~~~g------~~~~~D~v 321 (412)
......+.++..+++++.+ |.++..+ ++++.++ +++++|.|
T Consensus 187 --------------------------~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~v 240 (321)
T PRK10262 187 --------------------------LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGL 240 (321)
T ss_pred --------------------------HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEE
Confidence 0011235566778888876 7888754 3555432 37999999
Q ss_pred EEcCCCCCCCCCccccCccCCCCCCCCCCC----CCCCCCCCCeEEEeeecCc----cccchhhHHHHHHHHHHhhcccc
Q 037065 322 ILATGYKSNVPTWLKECDFFTKDGMPKTPF----PNGWKGENGLYTVGFTRRG----LQGTALDADKIAQDISEQWRKIK 393 (412)
Q Consensus 322 i~atG~~p~~~~~l~~~~~~~~~G~~~~~~----~~~~~~~~~iya~Gd~~~~----~~~a~~~~~~~a~~i~~~~~~~~ 393 (412)
++++|++||. .+++. ++..+.|++.++. ++++|++|+|||+|||+.. ...|+.+|..+|..|.+++.+..
T Consensus 241 v~a~G~~p~~-~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~~~~ 318 (321)
T PRK10262 241 FVAIGHSPNT-AIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLA 318 (321)
T ss_pred EEEeCCccCh-hHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHHhcc
Confidence 9999999998 45443 4533568888774 1468999999999999954 34899999999999999997654
No 8
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=2e-34 Score=277.67 Aligned_cols=296 Identities=19% Similarity=0.274 Sum_probs=201.9
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc-cCCCCCCCeeeecCCcccc----CCCCCCCCCCCCCCCHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL-WKHRTYDRLKLHLPKQFCE----LPLFGFPENFPKYPTKR 91 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 91 (412)
.|||+||||||+|+++|..|++.|.+|+|||+. .+||+ .+..|.+...+......+. ...+.++..........
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 589999999999999999999999999999995 56774 4555655532211111100 01111100000001111
Q ss_pred H-----------HHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCC-CCCCCC
Q 037065 92 Q-----------FIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFP-DVVGLD 159 (412)
Q Consensus 92 ~-----------~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p-~~~g~~ 159 (412)
. +.+.++...++.+++++.++.+. . ++ . +|..++..+.||+||+||| ++|..| .+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~-~--~~--~--~v~v~~~~~~~d~vIiAtG--s~p~~p~~i~g~~ 151 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF-T--KD--G--TVEVNGRDYTAPHILIATG--GKPSFPENIPGAE 151 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-c--cC--C--EEEECCEEEEeCEEEEecC--CCCCCCCCCCCCc
Confidence 2 22234445556677777665331 1 11 2 2555556799999999999 888888 788764
Q ss_pred CCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchH
Q 037065 160 KFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLR 239 (412)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
. .....+.. .....+++++|||+|.+|+|+|..++..|.+|+++.+.+ ++++..+. +..
T Consensus 152 ~----~~~~~~~~-~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~il~~~d~-----~~~---------- 210 (450)
T TIGR01421 152 L----GTDSDGFF-ALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE-RVLRSFDS-----MIS---------- 210 (450)
T ss_pred e----eEcHHHhh-CccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCcccCH-----HHH----------
Confidence 2 11211221 122347899999999999999999999999999999988 55554332 111
Q ss_pred HHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC-----eEEecC
Q 037065 240 LVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN-----GARFTD 312 (412)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~-----~v~~~~ 312 (412)
....+.+++.+|+++.+ |.++..+ .+.+++
T Consensus 211 -------------------------------------------~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~ 247 (450)
T TIGR01421 211 -------------------------------------------ETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFED 247 (450)
T ss_pred -------------------------------------------HHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECC
Confidence 11234456678888876 6777532 255667
Q ss_pred C-cEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHHHH
Q 037065 313 G-QEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQDIS 386 (412)
Q Consensus 313 g-~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~i~ 386 (412)
| +++++|.|++|+|++||+..+ ++..++ .+++|++.+| ++++|+.|+|||+|||+.... .|..||+.+|++|.
T Consensus 248 g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 248 GKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVD-EYQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLF 326 (450)
T ss_pred CcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeC-CCCcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHh
Confidence 7 579999999999999998543 677788 7888999998 467899999999999996544 88999999999997
Q ss_pred H
Q 037065 387 E 387 (412)
Q Consensus 387 ~ 387 (412)
+
T Consensus 327 ~ 327 (450)
T TIGR01421 327 N 327 (450)
T ss_pred c
Confidence 4
No 9
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=5.5e-34 Score=277.07 Aligned_cols=304 Identities=14% Similarity=0.153 Sum_probs=207.1
Q ss_pred cccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCccc-CCCCCCCeeeecCCc-cccCCCCC-CCC-CCCCCCC
Q 037065 14 SVLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLW-KHRTYDRLKLHLPKQ-FCELPLFG-FPE-NFPKYPT 89 (412)
Q Consensus 14 ~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~-~~~~~~~ 89 (412)
++.+|||+|||||++|+++|..|++.|.+|+|||+.+.+||.| +..+.+...+..... +..+...+ +.. ......+
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRIT 81 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccC
Confidence 3457999999999999999999999999999999988888865 444544432211100 00000000 000 0011123
Q ss_pred HHHHHH-----------HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc---eEEEeCEEEEeeCCCCCCCCCCC
Q 037065 90 KRQFIA-----------YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD---SEYISKWLVVATGENAEPVFPDV 155 (412)
Q Consensus 90 ~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~d~vIlAtG~~~~p~~p~~ 155 (412)
..++.+ ++++..++.+++++.+ ++..++. ..+++...+ .++.||+||+||| ++|..|.+
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~----~~~~v~~~~g~~~~~~~d~lviATG--s~p~~p~~ 154 (461)
T PRK05249 82 FADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDP----HTVEVECPDGEVETLTADKIVIATG--SRPYRPPD 154 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecC----CEEEEEeCCCceEEEEcCEEEEcCC--CCCCCCCC
Confidence 333332 3444556667777655 3433332 455566544 3799999999999 88888876
Q ss_pred CCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHh
Q 037065 156 VGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRW 235 (412)
Q Consensus 156 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (412)
++... ..+++..+.. .....+++++|||+|.+|+|+|..+++.|.+|+++.+++ ++++..+. +...
T Consensus 155 ~~~~~--~~v~~~~~~~-~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~~~----- 220 (461)
T PRK05249 155 VDFDH--PRIYDSDSIL-SLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLLSFLDD-----EISD----- 220 (461)
T ss_pred CCCCC--CeEEcHHHhh-chhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCCcCCH-----HHHH-----
Confidence 55432 1233332222 233457899999999999999999999999999999988 55554322 1111
Q ss_pred cchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEe--CCe--EE
Q 037065 236 FPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEIT--KNG--AR 309 (412)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~--~~~--v~ 309 (412)
.+.+.+++.+++++.+ |.++. .++ +.
T Consensus 221 ------------------------------------------------~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~ 252 (461)
T PRK05249 221 ------------------------------------------------ALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVH 252 (461)
T ss_pred ------------------------------------------------HHHHHHHHcCCEEEECCEEEEEEEeCCeEEEE
Confidence 1234455567888765 77765 333 44
Q ss_pred ecCCcEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHH
Q 037065 310 FTDGQEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQD 384 (412)
Q Consensus 310 ~~~g~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~ 384 (412)
+.+|+++++|.|++|+|++||...+ ++..++ .+++|++.+| .+++|+.|+|||+|||+..+. .|..||+.+|.+
T Consensus 253 ~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~ 331 (461)
T PRK05249 253 LKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVN-ENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQH 331 (461)
T ss_pred ECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHH
Confidence 5678899999999999999998543 677787 6788999998 567899999999999996433 789999999999
Q ss_pred HHH
Q 037065 385 ISE 387 (412)
Q Consensus 385 i~~ 387 (412)
|.+
T Consensus 332 i~g 334 (461)
T PRK05249 332 AVG 334 (461)
T ss_pred HcC
Confidence 975
No 10
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=2.7e-33 Score=274.44 Aligned_cols=287 Identities=18% Similarity=0.261 Sum_probs=220.4
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFI 94 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
...+||+||||||+|+++|..|++.|++++|+++. +||.|.... .+++++ .+ .+....++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~-------------~~~~~~---~~-~~~~~~~l~ 269 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTM-------------GIENFI---SV-PETEGPKLA 269 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccC-------------cccccC---CC-CCCCHHHHH
Confidence 34789999999999999999999999999999874 777664310 111111 00 124667899
Q ss_pred HHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCC
Q 037065 95 AYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKS 173 (412)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~ 173 (412)
+++++.+++++++++++++|++++..+ +.|.+.+.+ ..+.||+||+||| .++..+.+||...+.+..++++..++
T Consensus 270 ~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~~~V~~~~g~~i~a~~vViAtG--~~~r~~~ipG~~~~~~~~v~~~~~~~ 345 (517)
T PRK15317 270 AALEEHVKEYDVDIMNLQRASKLEPAA--GLIEVELANGAVLKAKTVILATG--ARWRNMNVPGEDEYRNKGVAYCPHCD 345 (517)
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEECCCCEEEcCEEEECCC--CCcCCCCCCCHHHhcCceEEEeeccC
Confidence 999999999999999999999998865 677787766 6899999999999 67777888887666556666655555
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHHHHhh
Q 037065 174 GSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMANITL 253 (412)
Q Consensus 174 ~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (412)
.....+++|+|||+|.+|+|+|..|+..+.+|+++.+.+ .+....
T Consensus 346 ~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~-~l~~~~---------------------------------- 390 (517)
T PRK15317 346 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP-ELKADQ---------------------------------- 390 (517)
T ss_pred chhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc-cccccH----------------------------------
Confidence 555678999999999999999999999999999999887 211100
Q ss_pred cCccccCCCCCCCCCccccccCCCcccccchhhhhhcc-CCEEEEcC--ceEEeCC-----eEEec---CCc--EecccE
Q 037065 254 GNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKS-GKIKVVGG--VKEITKN-----GARFT---DGQ--EKEIDA 320 (412)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~--v~~i~~~-----~v~~~---~g~--~~~~D~ 320 (412)
...+.+.. .+|+++.+ +.++..+ .+.+. +|+ ++++|.
T Consensus 391 ------------------------------~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~ 440 (517)
T PRK15317 391 ------------------------------VLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEG 440 (517)
T ss_pred ------------------------------HHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCE
Confidence 00122322 47888776 6666554 24443 333 589999
Q ss_pred EEEcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCc----cccchhhHHHHHHHHHHhhccc
Q 037065 321 IILATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRG----LQGTALDADKIAQDISEQWRKI 392 (412)
Q Consensus 321 vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~----~~~a~~~~~~~a~~i~~~~~~~ 392 (412)
+++++|++||+ .|++.. + ++++|++.+| ++++|+.|+|||+||++.. +..|+.+|..+|.++.+++.+.
T Consensus 441 v~~~~G~~p~~-~~l~~~-v~~~~~g~i~vd-~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~~ 514 (517)
T PRK15317 441 VFVQIGLVPNT-EWLKGT-VELNRRGEIIVD-ARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIRN 514 (517)
T ss_pred EEEeECCccCc-hHHhhh-eeeCCCCcEEEC-cCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhhc
Confidence 99999999998 677766 5 6778999988 4677999999999999864 3499999999999999888764
No 11
>PLN02507 glutathione reductase
Probab=100.00 E-value=1.2e-33 Score=274.70 Aligned_cols=299 Identities=15% Similarity=0.144 Sum_probs=205.0
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEec---------CCCCCccc-CCCCCCCeeeecCCcccc----CC--CC
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILER---------SDCLASLW-KHRTYDRLKLHLPKQFCE----LP--LF 78 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~---------~~~~g~~~-~~~~~~~~~~~~~~~~~~----~~--~~ 78 (412)
...|||+||||||+|+.+|..|++.|.+|+|||+ ...+||++ +..|++...+.....+.. .. +.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 4469999999999999999999999999999996 35677754 556766654422211110 00 11
Q ss_pred CCCCCCCCCCCHHHHHH-----------HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc---eEEEeCEEEEee
Q 037065 79 GFPENFPKYPTKRQFIA-----------YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD---SEYISKWLVVAT 144 (412)
Q Consensus 79 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~d~vIlAt 144 (412)
..... .......+.+ .+++.....+++++.+ ++..++. ..++|+..+ .++.||+||+||
T Consensus 103 ~~~~~--~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~----~~v~V~~~~g~~~~~~~d~LIIAT 175 (499)
T PLN02507 103 EINEK--VDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGP----NEVEVTQLDGTKLRYTAKHILIAT 175 (499)
T ss_pred ccCCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEEeCCCcEEEEEcCEEEEec
Confidence 11100 0122223332 2334444456666544 4444433 455666655 258999999999
Q ss_pred CCCCCCCCCCCCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCC
Q 037065 145 GENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFS 224 (412)
Q Consensus 145 G~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~ 224 (412)
| ++|..|.+||.+. ..+..+.. .....+++++|||+|.+|+|+|..+...|.+|+++++.+ ++++..+.
T Consensus 176 G--s~p~~p~ipG~~~----~~~~~~~~-~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~--- 244 (499)
T PLN02507 176 G--SRAQRPNIPGKEL----AITSDEAL-SLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-LPLRGFDD--- 244 (499)
T ss_pred C--CCCCCCCCCCccc----eechHHhh-hhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC-CcCcccCH---
Confidence 9 8888888888642 12222111 122347899999999999999999999999999999988 44443221
Q ss_pred hhhHHHHHHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceE
Q 037065 225 TFGIAMALLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKE 302 (412)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~ 302 (412)
+.... ..+.+++.+++++.+ |.+
T Consensus 245 --~~~~~-----------------------------------------------------l~~~l~~~GI~i~~~~~V~~ 269 (499)
T PLN02507 245 --EMRAV-----------------------------------------------------VARNLEGRGINLHPRTNLTQ 269 (499)
T ss_pred --HHHHH-----------------------------------------------------HHHHHHhCCCEEEeCCEEEE
Confidence 11111 134455667888876 777
Q ss_pred EeC--Ce--EEecCCcEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---c
Q 037065 303 ITK--NG--ARFTDGQEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---G 373 (412)
Q Consensus 303 i~~--~~--v~~~~g~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~ 373 (412)
+.. ++ +.+.+|+++++|.|++++|++||...+ ++..++ .+++|++.+| ++++|+.|||||+|||+.... .
T Consensus 270 i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd-~~~~Ts~p~IyAiGDv~~~~~l~~~ 348 (499)
T PLN02507 270 LTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVD-EYSRTNIPSIWAIGDVTNRINLTPV 348 (499)
T ss_pred EEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecC-CCCcCCCCCEEEeeEcCCCCccHHH
Confidence 653 23 455678899999999999999998543 677788 7788999998 466899999999999996544 8
Q ss_pred chhhHHHHHHHHHH
Q 037065 374 TALDADKIAQDISE 387 (412)
Q Consensus 374 a~~~~~~~a~~i~~ 387 (412)
|..||+.+++||.+
T Consensus 349 A~~qg~~aa~ni~g 362 (499)
T PLN02507 349 ALMEGTCFAKTVFG 362 (499)
T ss_pred HHHHHHHHHHHHcC
Confidence 89999999999975
No 12
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=2.6e-33 Score=274.25 Aligned_cols=286 Identities=22% Similarity=0.308 Sum_probs=213.6
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFI 94 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
...+||+||||||+|+++|..|++.|++|+||++ .+||.+.... . ...+... ......++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~--~--------~~~~~~~-------~~~~~~~l~ 270 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTV--G--------IENLISV-------PYTTGSQLA 270 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCc--C--------ccccccc-------CCCCHHHHH
Confidence 4479999999999999999999999999999986 4676553210 0 0011111 113567788
Q ss_pred HHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCC
Q 037065 95 AYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKS 173 (412)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~ 173 (412)
+.+.+..++++++++.+++|++++... +.+.+.+.+ ..+.||+||+||| +.+..|.+||...+....++.+..++
T Consensus 271 ~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~~~v~~~~g~~i~~d~lIlAtG--a~~~~~~ipG~~~~~~~~v~~~~~~~ 346 (515)
T TIGR03140 271 ANLEEHIKQYPIDLMENQRAKKIETED--GLIVVTLESGEVLKAKSVIVATG--ARWRKLGVPGEKEYIGKGVAYCPHCD 346 (515)
T ss_pred HHHHHHHHHhCCeEEcCCEEEEEEecC--CeEEEEECCCCEEEeCEEEECCC--CCcCCCCCCCHHHcCCCeEEEeeccC
Confidence 888888888999999999999998765 567777765 6799999999999 66777888886544444444444444
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHHHHhh
Q 037065 174 GSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMANITL 253 (412)
Q Consensus 174 ~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (412)
.....+++++|||+|.+|+|+|..|+..+.+|+++.+.+ .+... .
T Consensus 347 ~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~-~l~~~-----------~----------------------- 391 (515)
T TIGR03140 347 GPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD-ELKAD-----------K----------------------- 391 (515)
T ss_pred hhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC-cCChh-----------H-----------------------
Confidence 334568899999999999999999999999999999877 22100 0
Q ss_pred cCccccCCCCCCCCCccccccCCCcccccchhhhhhcc-CCEEEEcC--ceEEeCC-----eEEecC---C--cEecccE
Q 037065 254 GNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKS-GKIKVVGG--VKEITKN-----GARFTD---G--QEKEIDA 320 (412)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~--v~~i~~~-----~v~~~~---g--~~~~~D~ 320 (412)
...+.++. .+|+++.+ |.++..+ ++.+.+ + +++++|.
T Consensus 392 ------------------------------~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~ 441 (515)
T TIGR03140 392 ------------------------------VLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDG 441 (515)
T ss_pred ------------------------------HHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCE
Confidence 01233333 47887765 6777544 255543 2 3689999
Q ss_pred EEEcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCc----cccchhhHHHHHHHHHHhhcc
Q 037065 321 IILATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRG----LQGTALDADKIAQDISEQWRK 391 (412)
Q Consensus 321 vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~----~~~a~~~~~~~a~~i~~~~~~ 391 (412)
|++|+|++||+ .+++.. + .+++|++.+| +.++|+.|+|||+|||+.. +..|+.+|..+|..|.+++.+
T Consensus 442 vi~a~G~~Pn~-~~l~~~-~~~~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 442 VFVQIGLVPNT-EWLKDA-VELNRRGEIVID-ERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred EEEEeCCcCCc-hHHhhh-cccCCCCeEEEC-CCCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHhh
Confidence 99999999998 566665 5 6778999988 4678999999999999864 349999999999999988753
No 13
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=6.6e-34 Score=274.44 Aligned_cols=297 Identities=14% Similarity=0.163 Sum_probs=205.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc-cCCCCCCCeeeecCCccc----cCCCCCCCCCCCCCCC--
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL-WKHRTYDRLKLHLPKQFC----ELPLFGFPENFPKYPT-- 89 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-- 89 (412)
.|||+||||||+|+++|..+++.|++|+|+|+. .+||. .+..|.|...+....... ..+.+..... .....
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG-KARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC-CCCcCHH
Confidence 589999999999999999999999999999995 67774 345565554322111110 0011100000 00011
Q ss_pred ---------HHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCC
Q 037065 90 ---------KRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDK 160 (412)
Q Consensus 90 ---------~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~ 160 (412)
...+.+++++..++.+++++.+ ++..++. ..+.+..++.++.||+||+||| ++|..|.+||.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~----~~v~v~~~g~~~~~d~lIiATG--s~p~~p~i~G~~~ 152 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP----NTVEVLQDGTTYTAKKILIAVG--GRPQKPNLPGHEL 152 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEecCCeEEEcCEEEEecC--CcCCCCCCCCccc
Confidence 1233455566667778887655 5655543 2333443446799999999999 8898888888642
Q ss_pred CccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHH
Q 037065 161 FNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRL 240 (412)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
.+...+.. .....+++++|||+|.+|+|+|..+...|.+|+++.+.+ .+++..+. +...
T Consensus 153 ----~~~~~~~~-~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~-----~~~~---------- 211 (446)
T TIGR01424 153 ----GITSNEAF-HLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE-LILRGFDD-----DMRA---------- 211 (446)
T ss_pred ----eechHHhh-cccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC-CCCcccCH-----HHHH----------
Confidence 12211111 122347899999999999999999999999999999988 44443221 1111
Q ss_pred HHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeC--Ce--EEecCCc
Q 037065 241 VDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITK--NG--ARFTDGQ 314 (412)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~--~~--v~~~~g~ 314 (412)
.+.+.+++.+++++.+ |.++.. ++ +.+.+|+
T Consensus 212 -------------------------------------------~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~ 248 (446)
T TIGR01424 212 -------------------------------------------LLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGE 248 (446)
T ss_pred -------------------------------------------HHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCc
Confidence 1134455667888766 777753 23 5556788
Q ss_pred EecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHHHHH
Q 037065 315 EKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQDISE 387 (412)
Q Consensus 315 ~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~i~~ 387 (412)
++++|.|++|+|++||...+ ++..++ .+++|++.+| ++++|+.|+|||+|||+.... .|..||+.++++|.+
T Consensus 249 ~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 249 EIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVD-EYSRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFG 325 (446)
T ss_pred EeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeC-CCCccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhc
Confidence 99999999999999998544 677788 7788999988 457899999999999996533 889999999999975
No 14
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=7.4e-34 Score=275.79 Aligned_cols=298 Identities=18% Similarity=0.198 Sum_probs=200.7
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc-ccCCCCCCCeeeecCCccc------cCCCCCCCCCCCCCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS-LWKHRTYDRLKLHLPKQFC------ELPLFGFPENFPKYP 88 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 88 (412)
.+|||+||||||+|+++|..|++.|.+|+|||+.. +|| +.+..|.+...+....... ...+++.+.. ...
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~--~~~ 80 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGP--VSV 80 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCcc--Ccc
Confidence 46999999999999999999999999999999964 555 3344444432211111000 0111111000 012
Q ss_pred CHHHHHHH-----------HHHHHHHc-CCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCC
Q 037065 89 TKRQFIAY-----------IESYASHF-KIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVV 156 (412)
Q Consensus 89 ~~~~~~~~-----------~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~ 156 (412)
....+.++ ++...++. +++++.++.+ .+ ++ . ++..++.++.||+||+||| ++|..|.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~-~~--~~--~--~v~v~~~~~~~d~lViATG--s~p~~p~i~ 151 (463)
T PRK06370 81 DFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR-FE--SP--N--TVRVGGETLRAKRIFINTG--ARAAIPPIP 151 (463)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE-Ec--cC--C--EEEECcEEEEeCEEEEcCC--CCCCCCCCC
Confidence 23333322 33334444 6666655433 11 11 2 2555557799999999999 889999999
Q ss_pred CCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhc
Q 037065 157 GLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWF 236 (412)
Q Consensus 157 g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (412)
|.+.. .++...+.. .....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ ++++..+. +...
T Consensus 152 G~~~~--~~~~~~~~~-~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~~~-----~~~~------ 216 (463)
T PRK06370 152 GLDEV--GYLTNETIF-SLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP-RLLPREDE-----DVAA------ 216 (463)
T ss_pred CCCcC--ceEcchHhh-CccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CCCcccCH-----HHHH------
Confidence 87642 233333322 223457899999999999999999999999999999988 55554321 1111
Q ss_pred chHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC--e--EEe
Q 037065 237 PLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN--G--ARF 310 (412)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~--~--v~~ 310 (412)
...+.++..+++++.+ |.++..+ + +.+
T Consensus 217 -----------------------------------------------~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~ 249 (463)
T PRK06370 217 -----------------------------------------------AVREILEREGIDVRLNAECIRVERDGDGIAVGL 249 (463)
T ss_pred -----------------------------------------------HHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEE
Confidence 1134455667888766 7777642 2 333
Q ss_pred c---CCcEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHH
Q 037065 311 T---DGQEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIA 382 (412)
Q Consensus 311 ~---~g~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a 382 (412)
. ++.++++|.||+|+|++||...+ ++..++ .+++|++.+| +.++|+.|+|||+|||+.... .|..||+.+|
T Consensus 250 ~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa 328 (463)
T PRK06370 250 DCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD-DQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVA 328 (463)
T ss_pred EeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeEC-cCCcCCCCCEEEeeecCCCcccHHHHHHHHHHHH
Confidence 2 34579999999999999998545 677788 7788999988 467899999999999996544 7899999999
Q ss_pred HHHHHh
Q 037065 383 QDISEQ 388 (412)
Q Consensus 383 ~~i~~~ 388 (412)
+||.+.
T Consensus 329 ~ni~~~ 334 (463)
T PRK06370 329 ANLLDG 334 (463)
T ss_pred HHHhCC
Confidence 999754
No 15
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=1.6e-33 Score=272.64 Aligned_cols=296 Identities=17% Similarity=0.227 Sum_probs=203.2
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCccc-CCCCCCCeeeecCCccc----c-CCCCCCCCCCCCCCCH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLW-KHRTYDRLKLHLPKQFC----E-LPLFGFPENFPKYPTK 90 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~-~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~ 90 (412)
.|||+||||||+|+++|..|++.|.+|+|||+. .+||++ +..|.+...+....... . ...+.+... ......
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 81 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVT-ENKFDW 81 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCC-CCCcCH
Confidence 689999999999999999999999999999996 677754 44555543221111100 0 000000000 001112
Q ss_pred HH-----------HHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCC
Q 037065 91 RQ-----------FIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLD 159 (412)
Q Consensus 91 ~~-----------~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~ 159 (412)
.. +.+.+++...+.+++++.+ +++.++. . ++++++.++.||+||+||| ++|..|.++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~~----~--~v~~~g~~~~~d~lViATG--s~p~~p~i~g~~ 152 (450)
T PRK06116 82 AKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVDA----H--TVEVNGERYTADHILIATG--GRPSIPDIPGAE 152 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccC----C--EEEECCEEEEeCEEEEecC--CCCCCCCCCCcc
Confidence 22 2233344455567777655 3444432 2 3555557899999999999 889999888864
Q ss_pred CCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchH
Q 037065 160 KFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLR 239 (412)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
. .++..+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.+++ ++++..+. +..
T Consensus 153 ~----~~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~-----~~~---------- 211 (450)
T PRK06116 153 Y----GITSDGFFA-LEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD-APLRGFDP-----DIR---------- 211 (450)
T ss_pred e----eEchhHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCccccCH-----HHH----------
Confidence 2 233322222 23346899999999999999999999999999999988 44433221 111
Q ss_pred HHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeC--Ce---EEecC
Q 037065 240 LVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITK--NG---ARFTD 312 (412)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~--~~---v~~~~ 312 (412)
..+.+.+++.+++++.+ |.++.. ++ +.+.+
T Consensus 212 -------------------------------------------~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~ 248 (450)
T PRK06116 212 -------------------------------------------ETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLED 248 (450)
T ss_pred -------------------------------------------HHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcC
Confidence 11234455678888876 777753 22 55678
Q ss_pred CcEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHHHHH
Q 037065 313 GQEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQDISE 387 (412)
Q Consensus 313 g~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~i~~ 387 (412)
|+++++|.|++|+|++|+...+ ++..++ .+++|++.+| ++++|++|+|||+|||+..+. .|..||+.+|++|.+
T Consensus 249 g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 249 GETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVD-EYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecC-CCCCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhC
Confidence 8899999999999999998544 667777 7788999998 467899999999999995433 889999999999975
Q ss_pred h
Q 037065 388 Q 388 (412)
Q Consensus 388 ~ 388 (412)
.
T Consensus 328 ~ 328 (450)
T PRK06116 328 N 328 (450)
T ss_pred C
Confidence 3
No 16
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=9.5e-34 Score=260.28 Aligned_cols=287 Identities=18% Similarity=0.236 Sum_probs=216.9
Q ss_pred ccCeEEECCChHHHHHHHHHHHcC--CCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQG--LPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFI 94 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
+++|||||||++|+.+|..|.++. .+|++||+++... ++.+ +++...+..+..++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-------~~pl---------------L~eva~g~l~~~~i~ 60 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-------FTPL---------------LYEVATGTLSESEIA 60 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-------cchh---------------hhhhhcCCCChhhee
Confidence 578999999999999999999975 8999999987432 1000 011122345566666
Q ss_pred HHHHHHHHHcC-CcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeecc---
Q 037065 95 AYIESYASHFK-IQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTS--- 169 (412)
Q Consensus 95 ~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~--- 169 (412)
-.++..+++.+ +++. ..+|++|+.+++. |.+++ ..+.||+||+|+| +.+..+.+||+.++........
T Consensus 61 ~p~~~~~~~~~~v~~~-~~~V~~ID~~~k~----V~~~~~~~i~YD~LVvalG--s~~~~fgi~G~~E~a~~lks~edA~ 133 (405)
T COG1252 61 IPLRALLRKSGNVQFV-QGEVTDIDRDAKK----VTLADLGEISYDYLVVALG--SETNYFGIPGAAEYAFGLKTLEDAL 133 (405)
T ss_pred ccHHHHhcccCceEEE-EEEEEEEcccCCE----EEeCCCccccccEEEEecC--CcCCcCCCCCHHHhCCCCCCHHHHH
Confidence 66777777555 7766 4589999998854 88888 8899999999999 9999999999766422111111
Q ss_pred ----------CCCCCCCC--CCCeEEEEcCCCCHHHHHHHHhhcC-------------CccEEEEeCCCccccccccCCC
Q 037065 170 ----------KYKSGSEF--KNQKVLVIGCGNSGMEVSLDLCRHN-------------AIPHMVARNSVHVLPREIFGFS 224 (412)
Q Consensus 170 ----------~~~~~~~~--~~~~v~vvG~G~~~~e~a~~l~~~g-------------~~v~~~~r~~~~~~~~~~~~~~ 224 (412)
+....... .-..++|+|+|++|+|+|..|.+.- .+|+++.+.+ ++||....
T Consensus 134 ~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p-~ILp~~~~--- 209 (405)
T COG1252 134 RLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP-RILPMFPP--- 209 (405)
T ss_pred HHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-hhccCCCH---
Confidence 11110111 1236999999999999999988752 2789999988 77777543
Q ss_pred hhhHHHHHHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceE
Q 037065 225 TFGIAMALLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKE 302 (412)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~ 302 (412)
+++..+ .+.+++.+|+++.+ |++
T Consensus 210 --~l~~~a-----------------------------------------------------~~~L~~~GV~v~l~~~Vt~ 234 (405)
T COG1252 210 --KLSKYA-----------------------------------------------------ERALEKLGVEVLLGTPVTE 234 (405)
T ss_pred --HHHHHH-----------------------------------------------------HHHHHHCCCEEEcCCceEE
Confidence 222222 34556778999887 999
Q ss_pred EeCCeEEecCCcE-ecccEEEEcCCCCCCCCCccccC-cc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCcc------c-
Q 037065 303 ITKNGARFTDGQE-KEIDAIILATGYKSNVPTWLKEC-DF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGL------Q- 372 (412)
Q Consensus 303 i~~~~v~~~~g~~-~~~D~vi~atG~~p~~~~~l~~~-~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~------~- 372 (412)
+++++|++.+|.+ +++|++||++|.+++ .+++.+ ++ .|..|++.++..++..++|+||++|||+..+ .
T Consensus 235 v~~~~v~~~~g~~~I~~~tvvWaaGv~a~--~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~t 312 (405)
T COG1252 235 VTPDGVTLKDGEEEIPADTVVWAAGVRAS--PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPT 312 (405)
T ss_pred ECCCcEEEccCCeeEecCEEEEcCCCcCC--hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCCh
Confidence 9999999999985 999999999999999 567774 66 5778999999878889999999999999332 2
Q ss_pred --cchhhHHHHHHHHHHhhcccc
Q 037065 373 --GTALDADKIAQDISEQWRKIK 393 (412)
Q Consensus 373 --~a~~~~~~~a~~i~~~~~~~~ 393 (412)
.|..||..+|+||.+.+.+.+
T Consensus 313 AQ~A~Qqg~~~a~ni~~~l~g~~ 335 (405)
T COG1252 313 AQAAHQQGEYAAKNIKARLKGKP 335 (405)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCC
Confidence 889999999999999999954
No 17
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=1.3e-32 Score=271.12 Aligned_cols=288 Identities=21% Similarity=0.286 Sum_probs=211.9
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
++||+|||||||||++|..|++.|++|+|||+. .+||.+.... ....++.. ......++.++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~----------~i~~~pg~-------~~~~~~~l~~~ 65 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITS----------EVVNYPGI-------LNTTGPELMQE 65 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecc----------ccccCCCC-------cCCCHHHHHHH
Confidence 689999999999999999999999999999996 5666432110 00011111 12456788899
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSE 176 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~ 176 (412)
+++.+++++++++ +++|+.++..+ ..+.+.+.+..+.+++||+||| ++|..|.++|...+....++++..++...
T Consensus 66 l~~~~~~~gv~~~-~~~V~~i~~~~--~~~~V~~~~g~~~a~~lVlATG--a~p~~~~ipG~~~~~~~~v~~~~~~~~~~ 140 (555)
T TIGR03143 66 MRQQAQDFGVKFL-QAEVLDVDFDG--DIKTIKTARGDYKTLAVLIATG--ASPRKLGFPGEEEFTGRGVAYCATCDGEF 140 (555)
T ss_pred HHHHHHHcCCEEe-ccEEEEEEecC--CEEEEEecCCEEEEeEEEECCC--CccCCCCCCCHHHhCCceEEEEeecChhh
Confidence 9988999998875 67898888755 4566777777899999999999 78888889887654445555555555455
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHHHHhhcCc
Q 037065 177 FKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMANITLGNT 256 (412)
Q Consensus 177 ~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (412)
..+++++|||+|.+|+|+|..|.+.|.+|+++.|.+ .+..... ..
T Consensus 141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~-~~~~~~~-------------------~~--------------- 185 (555)
T TIGR03143 141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP-DFTCAKL-------------------IA--------------- 185 (555)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC-ccccCHH-------------------HH---------------
Confidence 678999999999999999999999999999999987 2211000 00
Q ss_pred cccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCCe-E---E---ecCCcEe----cccE---
Q 037065 257 DQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKNG-A---R---FTDGQEK----EIDA--- 320 (412)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~~-v---~---~~~g~~~----~~D~--- 320 (412)
...+...+++++.+ |.++..++ + . ..+|+.. ++|.
T Consensus 186 -----------------------------~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~ 236 (555)
T TIGR03143 186 -----------------------------EKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTF 236 (555)
T ss_pred -----------------------------HHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccce
Confidence 01122347777765 77776542 2 2 2356533 3666
Q ss_pred -EEEcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecC----ccccchhhHHHHHHHHHHhhccccc
Q 037065 321 -IILATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRR----GLQGTALDADKIAQDISEQWRKIKD 394 (412)
Q Consensus 321 -vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~----~~~~a~~~~~~~a~~i~~~~~~~~~ 394 (412)
|++++|++||. .+++. ++ ++++|++.+| .+++|+.|+|||+|||+. .+..|..||+.+|.+|.+++.+...
T Consensus 237 ~Vi~a~G~~Pn~-~l~~~-~l~l~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l~~~~~ 313 (555)
T TIGR03143 237 GVFVFVGYAPSS-ELFKG-VVELDKRGYIPTN-EDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVKELKE 313 (555)
T ss_pred EEEEEeCCCCCh-hHHhh-hcccCCCCeEEeC-CccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHHHhhhh
Confidence 99999999998 56554 45 6778999988 467889999999999974 2448999999999999999876543
No 18
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=7e-33 Score=266.50 Aligned_cols=280 Identities=16% Similarity=0.192 Sum_probs=198.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHc--CCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCC-CCCHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQ--GLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPK-YPTKRQF 93 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 93 (412)
|.+|+|||||++|+.+|..|++. +.+|+|||+++.++- ..+ ..++ ...+ .....+.
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~-------~~~------------~lp~--~~~~~~~~~~~~ 59 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSF-------ANC------------ALPY--YIGEVVEDRKYA 59 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCccc-------ccC------------Ccch--hhcCccCCHHHc
Confidence 34899999999999999999987 579999999876541 100 0000 0001 1112222
Q ss_pred HHH-HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc----eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeec
Q 037065 94 IAY-IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD----SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHT 168 (412)
Q Consensus 94 ~~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~----~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~ 168 (412)
..+ .+.+.++.+++++.+++|++|+.++ ..+.+.... ..+.||+||+||| ++|..|.+++. ..+..
T Consensus 60 ~~~~~~~~~~~~~i~v~~~~~V~~Id~~~--~~v~~~~~~~~~~~~~~yd~lviAtG--s~~~~~~~~~~-----~~~~~ 130 (438)
T PRK13512 60 LAYTPEKFYDRKQITVKTYHEVIAINDER--QTVTVLNRKTNEQFEESYDKLILSPG--ASANSLGFESD-----ITFTL 130 (438)
T ss_pred ccCCHHHHHHhCCCEEEeCCEEEEEECCC--CEEEEEECCCCcEEeeecCEEEECCC--CCCCCCCCCCC-----CeEEe
Confidence 222 1344456789998889999999877 454444422 2478999999999 88877765321 12221
Q ss_pred cCCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHH
Q 037065 169 SKYKSG-------SEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLV 241 (412)
Q Consensus 169 ~~~~~~-------~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (412)
....+. ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ ++++..+. +..
T Consensus 131 ~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~~d~-----~~~------------ 192 (438)
T PRK13512 131 RNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD-KINKLMDA-----DMN------------ 192 (438)
T ss_pred cCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccchhcCH-----HHH------------
Confidence 111110 12246899999999999999999999999999999988 44443221 111
Q ss_pred HHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCCeEEecCCcEeccc
Q 037065 242 DKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKNGARFTDGQEKEID 319 (412)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~~v~~~~g~~~~~D 319 (412)
....+.+++.+++++.+ |.+++...+++.+|+++++|
T Consensus 193 -----------------------------------------~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D 231 (438)
T PRK13512 193 -----------------------------------------QPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYD 231 (438)
T ss_pred -----------------------------------------HHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeC
Confidence 11234556678888876 88888778888889999999
Q ss_pred EEEEcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCc-------------cccchhhHHHHHHHH
Q 037065 320 AIILATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRG-------------LQGTALDADKIAQDI 385 (412)
Q Consensus 320 ~vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~-------------~~~a~~~~~~~a~~i 385 (412)
.|++|+|++||. .+++..++ .+++|++.+|. +++|+.|+|||+|||+.. ...|..||+.+|+||
T Consensus 232 ~vl~a~G~~pn~-~~l~~~gl~~~~~G~i~Vd~-~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni 309 (438)
T PRK13512 232 MIIEGVGTHPNS-KFIESSNIKLDDKGFIPVND-KFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQI 309 (438)
T ss_pred EEEECcCCCcCh-HHHHhcCcccCCCCcEEECC-CcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHh
Confidence 999999999998 57888888 67889998884 567999999999999842 115678898899988
Q ss_pred HH
Q 037065 386 SE 387 (412)
Q Consensus 386 ~~ 387 (412)
.+
T Consensus 310 ~g 311 (438)
T PRK13512 310 AG 311 (438)
T ss_pred cC
Confidence 65
No 19
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=2.4e-33 Score=268.61 Aligned_cols=286 Identities=14% Similarity=0.156 Sum_probs=206.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
+++|||||||++|+.+|..|.+.+.+|+|||+++..- |..+ ++....+....+++...
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~---------------l~~~~~g~~~~~~~~~~ 67 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPL---------------LPQTTTGTLEFRSICEP 67 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhh---------------HHHhcccCCChHHhHHH
Confidence 6799999999999999999987788999999987421 1100 00011122334455555
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEE--------cc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceee
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQT--------QD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLH 167 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~--------~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~ 167 (412)
++..+...++++. ..+|++|+.++ ..+.+.. .+ .++.||+||+||| +.+..+.+||..+. .+.
T Consensus 68 ~~~~~~~~~~~~i-~~~V~~Id~~~--~~v~~~~~~~~~~~~~~g~~i~yD~LViAtG--s~~~~~~ipG~~e~---~~~ 139 (424)
T PTZ00318 68 VRPALAKLPNRYL-RAVVYDVDFEE--KRVKCGVVSKSNNANVNTFSVPYDKLVVAHG--ARPNTFNIPGVEER---AFF 139 (424)
T ss_pred HHHHhccCCeEEE-EEEEEEEEcCC--CEEEEecccccccccCCceEecCCEEEECCC--cccCCCCCCCHHHc---CCC
Confidence 6666666677765 56899999876 4444421 22 5799999999999 88888888887542 111
Q ss_pred ccCCCC----------------------CCCCCCCeEEEEcCCCCHHHHHHHHhhc--------------CCccEEEEeC
Q 037065 168 TSKYKS----------------------GSEFKNQKVLVIGCGNSGMEVSLDLCRH--------------NAIPHMVARN 211 (412)
Q Consensus 168 ~~~~~~----------------------~~~~~~~~v~vvG~G~~~~e~a~~l~~~--------------g~~v~~~~r~ 211 (412)
.....+ ......++++|||+|.+|+|+|..|.+. +.+|+++++.
T Consensus 140 ~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 219 (424)
T PTZ00318 140 LKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAG 219 (424)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCC
Confidence 111000 0011235899999999999999998862 6789999988
Q ss_pred CCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhcc
Q 037065 212 SVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKS 291 (412)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (412)
+ ++++..+. + ......+.+++
T Consensus 220 ~-~ll~~~~~-----~-----------------------------------------------------~~~~~~~~L~~ 240 (424)
T PTZ00318 220 S-EVLGSFDQ-----A-----------------------------------------------------LRKYGQRRLRR 240 (424)
T ss_pred C-cccccCCH-----H-----------------------------------------------------HHHHHHHHHHH
Confidence 7 55443211 1 11112455667
Q ss_pred CCEEEEcC--ceEEeCCeEEecCCcEecccEEEEcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeec
Q 037065 292 GKIKVVGG--VKEITKNGARFTDGQEKEIDAIILATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTR 368 (412)
Q Consensus 292 ~~v~v~~~--v~~i~~~~v~~~~g~~~~~D~vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~ 368 (412)
.+|+++.+ |.+++.+.+.+++|+++++|++|+++|.+|+ .+++.+++ .+++|++.+|..++.+++|||||+|||+
T Consensus 241 ~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~--~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a 318 (424)
T PTZ00318 241 LGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG--PLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCA 318 (424)
T ss_pred CCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc--chhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccc
Confidence 88999966 9999988999999999999999999999998 46777777 6788999999654447999999999999
Q ss_pred Cc-----c---ccchhhHHHHHHHHHHhhcccc
Q 037065 369 RG-----L---QGTALDADKIAQDISEQWRKIK 393 (412)
Q Consensus 369 ~~-----~---~~a~~~~~~~a~~i~~~~~~~~ 393 (412)
.. + ..|+.||+.+|+||.+.+.+..
T Consensus 319 ~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~~ 351 (424)
T PTZ00318 319 ANEERPLPTLAQVASQQGVYLAKEFNNELKGKP 351 (424)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCC
Confidence 52 1 2689999999999999997753
No 20
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-32 Score=267.98 Aligned_cols=299 Identities=22% Similarity=0.273 Sum_probs=200.8
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc-cCCCCCCCeeeecCCccccC----CCCCCCCCCCCCCCH
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL-WKHRTYDRLKLHLPKQFCEL----PLFGFPENFPKYPTK 90 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 90 (412)
..|||+||||||+|+++|..|++.|.+|+|+|+.. +||+ ++..+.+...+......+.. ..+.+... ......
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 80 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDF 80 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCH
Confidence 36899999999999999999999999999999977 7774 46666665433322221111 11111000 111234
Q ss_pred HHHHHH-----------HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEc--ceEEEeCEEEEeeCCCCCCCCCCCCC
Q 037065 91 RQFIAY-----------IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQ--DSEYISKWLVVATGENAEPVFPDVVG 157 (412)
Q Consensus 91 ~~~~~~-----------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~--~~~~~~d~vIlAtG~~~~p~~p~~~g 157 (412)
..+.+| ++...++.+++++.+ +++.++. ..+++... ..++.||+||+||| ++|..| ||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~----~~~~v~~~~~~~~~~~d~lViAtG--s~p~~~--pg 151 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDP----NTVRVMTEDGEQTYTAKNIILATG--SRPREL--PG 151 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccC----CEEEEecCCCcEEEEeCEEEEeCC--CCCCCC--CC
Confidence 444444 334455567777655 3444432 34445432 26799999999999 677654 44
Q ss_pred CCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcc
Q 037065 158 LDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFP 237 (412)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (412)
... .+..+++.+........+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ +++|..+. +...
T Consensus 152 ~~~-~~~~v~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~~~------- 217 (462)
T PRK06416 152 IEI-DGRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP-RILPGEDK-----EISK------- 217 (462)
T ss_pred CCC-CCCeEEcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CcCCcCCH-----HHHH-------
Confidence 432 122222222222223456899999999999999999999999999999988 55554321 1111
Q ss_pred hHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC--e--EEec
Q 037065 238 LRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN--G--ARFT 311 (412)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~--~--v~~~ 311 (412)
...+.+++.+++++.+ |.++..+ + +.+.
T Consensus 218 ----------------------------------------------~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~ 251 (462)
T PRK06416 218 ----------------------------------------------LAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLE 251 (462)
T ss_pred ----------------------------------------------HHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEE
Confidence 1134455667888876 7777643 3 3445
Q ss_pred CC---cEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHH
Q 037065 312 DG---QEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQ 383 (412)
Q Consensus 312 ~g---~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~ 383 (412)
++ +++++|.||+|+|.+|+...+ ++..++ .+ +|++.+| +.++|+.|+|||+|||+..+. .|..||+.+|.
T Consensus 252 ~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd-~~~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ 329 (462)
T PRK06416 252 DGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVD-EQLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAE 329 (462)
T ss_pred eCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeEC-CCCccCCCCEEEeeecCCCcchHHHHHHHHHHHHH
Confidence 55 679999999999999998443 467777 56 8999888 456799999999999986433 78999999999
Q ss_pred HHHH
Q 037065 384 DISE 387 (412)
Q Consensus 384 ~i~~ 387 (412)
+|.+
T Consensus 330 ni~~ 333 (462)
T PRK06416 330 AIAG 333 (462)
T ss_pred HHcC
Confidence 9986
No 21
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.3e-32 Score=265.61 Aligned_cols=295 Identities=16% Similarity=0.224 Sum_probs=199.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC-CCCccc-CCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD-CLASLW-KHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFI 94 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
.|||+|||||++|+++|..|+++|.+|+|||+.+ .+||+| +..+.+...+..... ....|. ......+.+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~----~~~~~~---~~~~~~~~~~ 75 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ----QHTDFV---RAIQRKNEVV 75 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhc----cCCCHH---HHHHHHHHHH
Confidence 5899999999999999999999999999999976 467765 333333321111000 000000 0000112222
Q ss_pred HHHH-----HHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc--eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceee
Q 037065 95 AYIE-----SYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD--SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLH 167 (412)
Q Consensus 95 ~~~~-----~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~--~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~ 167 (412)
++++ +..+..+++++.+ ++..++. ..+.+.+.+ .++.||+||+||| ++|..|.+||.+...+ +++
T Consensus 76 ~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~----~~~~v~~~~g~~~~~~d~lviATG--s~p~~p~i~G~~~~~~-v~~ 147 (441)
T PRK08010 76 NFLRNKNFHNLADMPNIDVIDG-QAEFINN----HSLRVHRPEGNLEIHGEKIFINTG--AQTVVPPIPGITTTPG-VYD 147 (441)
T ss_pred HHHHHhHHHHHhhcCCcEEEEE-EEEEecC----CEEEEEeCCCeEEEEeCEEEEcCC--CcCCCCCCCCccCCCC-EEC
Confidence 3332 2222336666544 4444432 455566555 3699999999999 8889999998765332 333
Q ss_pred ccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHH
Q 037065 168 TSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLL 247 (412)
Q Consensus 168 ~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (412)
..+.. .....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ +++|..+. +...
T Consensus 148 ~~~~~-~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~~~----------------- 203 (441)
T PRK08010 148 STGLL-NLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFLPREDR-----DIAD----------------- 203 (441)
T ss_pred hhHhh-cccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCCcCH-----HHHH-----------------
Confidence 32222 233457899999999999999999999999999999988 66665432 1111
Q ss_pred HHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC--eEEec-CCcEecccEEE
Q 037065 248 MANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN--GARFT-DGQEKEIDAII 322 (412)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~--~v~~~-~g~~~~~D~vi 322 (412)
...+.+++.+++++.+ |.++..+ .+.+. ++.++++|.|+
T Consensus 204 ------------------------------------~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl 247 (441)
T PRK08010 204 ------------------------------------NIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALL 247 (441)
T ss_pred ------------------------------------HHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEE
Confidence 1234556678888866 7777632 34332 23368999999
Q ss_pred EcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHHHHH
Q 037065 323 LATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQDISE 387 (412)
Q Consensus 323 ~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~i~~ 387 (412)
+|+|.+||...+ ++..++ ++++|++.+| ++++|+.|+|||+|||+.... .|..+|+.++++|.+
T Consensus 248 ~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 248 IASGRQPATASLHPENAGIAVNERGAIVVD-KYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLG 316 (441)
T ss_pred EeecCCcCCCCcCchhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcC
Confidence 999999998543 566777 6788999998 467899999999999997544 788899999999865
No 22
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=7.7e-33 Score=268.85 Aligned_cols=297 Identities=21% Similarity=0.248 Sum_probs=199.9
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCccc-CCCCCCCeeeecCCccccCC---CCCCCCCCCCCCCH---
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLW-KHRTYDRLKLHLPKQFCELP---LFGFPENFPKYPTK--- 90 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--- 90 (412)
|||+||||||+|+++|..|++.|.+|+|||+.. +||.| +..|.+...+.......... .+.+... ...+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~ 78 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAA-TVAVDFGEL 78 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccC-CCccCHHHH
Confidence 699999999999999999999999999999976 67655 44455543322111111110 0000000 001111
Q ss_pred ----HHHHHH-----HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc--eEEEeCEEEEeeCCCCCCCCCCCCCCC
Q 037065 91 ----RQFIAY-----IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD--SEYISKWLVVATGENAEPVFPDVVGLD 159 (412)
Q Consensus 91 ----~~~~~~-----~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~--~~~~~d~vIlAtG~~~~p~~p~~~g~~ 159 (412)
+++... ++...++.+++++.+. +..++ ..++...+ ..+.+|+||+||| ++|..|.+||.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~~~------~~~v~v~~g~~~~~~~~lIiATG--s~p~~p~i~G~~ 149 (463)
T TIGR02053 79 LEGKREVVEELRHEKYEDVLSSYGVDYLRGR-ARFKD------PKTVKVDLGREVRGAKRFLIATG--ARPAIPPIPGLK 149 (463)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEEcc------CCEEEEcCCeEEEEeCEEEEcCC--CCCCCCCCCCcc
Confidence 222222 2244555677766442 32222 12355544 4689999999999 889999998876
Q ss_pred CCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchH
Q 037065 160 KFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLR 239 (412)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
.. .+++..+... ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++|..+. +....
T Consensus 150 ~~--~~~~~~~~~~-~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~~~~-------- 212 (463)
T TIGR02053 150 EA--GYLTSEEALA-LDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD-RLLPREEP-----EISAA-------- 212 (463)
T ss_pred cC--ceECchhhhC-cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cCCCccCH-----HHHHH--------
Confidence 53 2333323222 22346899999999999999999999999999999988 56655322 11111
Q ss_pred HHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC--e--EEec--
Q 037065 240 LVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN--G--ARFT-- 311 (412)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~--~--v~~~-- 311 (412)
..+.++..+++++.+ |.++..+ . +.+.
T Consensus 213 ---------------------------------------------l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~ 247 (463)
T TIGR02053 213 ---------------------------------------------VEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKP 247 (463)
T ss_pred ---------------------------------------------HHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeC
Confidence 134445567887766 6666532 2 3332
Q ss_pred -CCcEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHHH
Q 037065 312 -DGQEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQDI 385 (412)
Q Consensus 312 -~g~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~i 385 (412)
+++++++|.|++|+|++||...+ ++..++ .+++|++.+| ++++|+.|+|||+|||+..+. .|..||+.+|.+|
T Consensus 248 ~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni 326 (463)
T TIGR02053 248 GGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVD-ETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENA 326 (463)
T ss_pred CCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeEC-CCccCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHh
Confidence 23579999999999999998645 777787 6789999998 567899999999999997643 8899999999999
Q ss_pred HHh
Q 037065 386 SEQ 388 (412)
Q Consensus 386 ~~~ 388 (412)
.+.
T Consensus 327 ~~~ 329 (463)
T TIGR02053 327 LGG 329 (463)
T ss_pred cCC
Confidence 753
No 23
>PLN02546 glutathione reductase
Probab=100.00 E-value=5e-33 Score=271.41 Aligned_cols=300 Identities=14% Similarity=0.195 Sum_probs=202.6
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecC---------CCCCc-ccCCCCCCCeeeecCCcccc-C---C--CC
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERS---------DCLAS-LWKHRTYDRLKLHLPKQFCE-L---P--LF 78 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~---------~~~g~-~~~~~~~~~~~~~~~~~~~~-~---~--~~ 78 (412)
...|||+|||+|++|+.+|..|++.|.+|+|+|+. ..+|| +.+..|.|...+........ + . ++
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 34689999999999999999999999999999962 34566 44555655544332211111 0 0 11
Q ss_pred CCC----CCCCCCC-----CHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCC
Q 037065 79 GFP----ENFPKYP-----TKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAE 149 (412)
Q Consensus 79 ~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~ 149 (412)
... -.|.... ....+.+++++..++.+++++.+ +++.++.. ++..++..+.||+||+||| ++
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~~------~V~v~G~~~~~D~LVIATG--s~ 227 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDPH------TVDVDGKLYTARNILIAVG--GR 227 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccCC------EEEECCEEEECCEEEEeCC--CC
Confidence 100 0000000 11223345555566667777654 34444431 2555567899999999999 89
Q ss_pred CCCCCCCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHH
Q 037065 150 PVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIA 229 (412)
Q Consensus 150 p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~ 229 (412)
|..|.+||.+. ++...+.. .....+++++|||+|.+|+|+|..+...+.+|+++.+.+ ++++..+. +..
T Consensus 228 p~~P~IpG~~~----v~~~~~~l-~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~il~~~d~-----~~~ 296 (558)
T PLN02546 228 PFIPDIPGIEH----AIDSDAAL-DLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-KVLRGFDE-----EVR 296 (558)
T ss_pred CCCCCCCChhh----ccCHHHHH-hccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-ccccccCH-----HHH
Confidence 99999888653 22222111 223357899999999999999999999999999999887 55543322 111
Q ss_pred HHHHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeC--
Q 037065 230 MALLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITK-- 305 (412)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~-- 305 (412)
.. ..+.+++.+|+++.+ +.++..
T Consensus 297 ~~-----------------------------------------------------l~~~L~~~GV~i~~~~~v~~i~~~~ 323 (558)
T PLN02546 297 DF-----------------------------------------------------VAEQMSLRGIEFHTEESPQAIIKSA 323 (558)
T ss_pred HH-----------------------------------------------------HHHHHHHCCcEEEeCCEEEEEEEcC
Confidence 11 134455678888876 666642
Q ss_pred -CeE--EecCCcEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhh
Q 037065 306 -NGA--RFTDGQEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALD 377 (412)
Q Consensus 306 -~~v--~~~~g~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~ 377 (412)
+.+ ...+++...+|.|++++|++||...+ ++..++ .+++|++.+| ++++|+.|+|||+|||+..+. .|..|
T Consensus 324 ~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD-~~l~Ts~p~IYAaGDv~~~~~l~~~A~~~ 402 (558)
T PLN02546 324 DGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVD-EYSRTSVPSIWAVGDVTDRINLTPVALME 402 (558)
T ss_pred CCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeEC-CCceeCCCCEEEeeccCCCcccHHHHHHH
Confidence 223 33444445689999999999998544 677888 7788999998 467899999999999996544 78899
Q ss_pred HHHHHHHHHHh
Q 037065 378 ADKIAQDISEQ 388 (412)
Q Consensus 378 ~~~~a~~i~~~ 388 (412)
|+.+|++|.+.
T Consensus 403 g~~~a~~i~g~ 413 (558)
T PLN02546 403 GGALAKTLFGN 413 (558)
T ss_pred HHHHHHHHcCC
Confidence 99999999753
No 24
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.1e-32 Score=265.22 Aligned_cols=298 Identities=16% Similarity=0.187 Sum_probs=196.3
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc-cCCCCCCCeeeecCCcccc----CC--CCCCCCCCCCCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL-WKHRTYDRLKLHLPKQFCE----LP--LFGFPENFPKYP 88 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~-~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~ 88 (412)
.+|||+|||||++|+++|..|++.|.+|+|||+.+.+||+ ++..|.|...+......+. .. +..+. ....
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~---~~~~ 79 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG---EPKI 79 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC---CCCc
Confidence 3699999999999999999999999999999998777774 4555666543221111000 00 11110 0012
Q ss_pred CHHHHHHHH-----------HHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc---eEEEeCEEEEeeCCCCCCC-CC
Q 037065 89 TKRQFIAYI-----------ESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD---SEYISKWLVVATGENAEPV-FP 153 (412)
Q Consensus 89 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~d~vIlAtG~~~~p~-~p 153 (412)
....+.++. ...+++.+++++.+. +..++ + ..+.+...+ .++.||+||+||| ++|. .|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~~--~--~~v~v~~~~g~~~~~~~d~lViATG--s~p~~~p 152 (471)
T PRK06467 80 DIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFTG--G--NTLEVTGEDGKTTVIEFDNAIIAAG--SRPIQLP 152 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc--C--CEEEEecCCCceEEEEcCEEEEeCC--CCCCCCC
Confidence 223333222 233455577776553 33222 2 344555433 4799999999999 7776 34
Q ss_pred CCCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHH
Q 037065 154 DVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALL 233 (412)
Q Consensus 154 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 233 (412)
.+++... .++...+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ +++|..+. +....+
T Consensus 153 ~~~~~~~---~v~~~~~~~~-~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il~~~d~-----~~~~~~- 221 (471)
T PRK06467 153 FIPHDDP---RIWDSTDALE-LKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVIPAADK-----DIVKVF- 221 (471)
T ss_pred CCCCCCC---cEEChHHhhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCCcCCH-----HHHHHH-
Confidence 4444322 2333333222 22346899999999999999999999999999999988 66665432 222211
Q ss_pred HhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEe--CCe--
Q 037065 234 RWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEIT--KNG-- 307 (412)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~--~~~-- 307 (412)
.+.++.. ++++.+ |.++. +++
T Consensus 222 ----------------------------------------------------~~~l~~~-v~i~~~~~v~~i~~~~~~~~ 248 (471)
T PRK06467 222 ----------------------------------------------------TKRIKKQ-FNIMLETKVTAVEAKEDGIY 248 (471)
T ss_pred ----------------------------------------------------HHHHhhc-eEEEcCCEEEEEEEcCCEEE
Confidence 2333333 666655 55554 233
Q ss_pred EEecC--C--cEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhH
Q 037065 308 ARFTD--G--QEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDA 378 (412)
Q Consensus 308 v~~~~--g--~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~ 378 (412)
+.+.+ + +++++|.||+|+|++||++.+ ++..++ ++++|++.+| ++++|+.|+|||+|||+..+. .|..||
T Consensus 249 v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd-~~~~t~~p~VyAiGDv~~~~~la~~A~~eG 327 (471)
T PRK06467 249 VTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVD-KQCRTNVPHIFAIGDIVGQPMLAHKGVHEG 327 (471)
T ss_pred EEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeC-CCcccCCCCEEEehhhcCCcccHHHHHHHH
Confidence 33333 2 369999999999999998543 566677 7889999998 467899999999999985433 889999
Q ss_pred HHHHHHHHHh
Q 037065 379 DKIAQDISEQ 388 (412)
Q Consensus 379 ~~~a~~i~~~ 388 (412)
+.+|.+|.+.
T Consensus 328 ~~aa~~i~g~ 337 (471)
T PRK06467 328 HVAAEVIAGK 337 (471)
T ss_pred HHHHHHHcCC
Confidence 9999999753
No 25
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.1e-32 Score=252.47 Aligned_cols=301 Identities=34% Similarity=0.551 Sum_probs=227.2
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCC--------C-CCCeeeecCCccccCCCCCCCCCCCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHR--------T-YDRLKLHLPKQFCELPLFGFPENFPKY 87 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (412)
.++|+|||||+|||++|..|.+.|++++++||.+++||+|... . |++++.+.|+..+.++.+||++..+.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 5799999999999999999999999999999999999999886 4 999999999999999999999885554
Q ss_pred -CCHHHHHHHHHHHHHHcCCc--ccccceEEEEEEcCCCCcEEEEEcc-----eEEEeCEEEEeeCCCCCCCCCCCCC--
Q 037065 88 -PTKRQFIAYIESYASHFKIQ--PKFKQAVQTALFDHASGFWRVQTQD-----SEYISKWLVVATGENAEPVFPDVVG-- 157 (412)
Q Consensus 88 -~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~v~~~~-----~~~~~d~vIlAtG~~~~p~~p~~~g-- 157 (412)
++..++.+||+.+++++++. +.++++|..++...+ +.|.|.+.+ ...-||.|++|||....|.+|.++|
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~ 164 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPG 164 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCc
Confidence 88899999999999999986 567777777776654 699998866 3678999999999876699999988
Q ss_pred CCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeC-CCccccccccCCChhhHHHHHHHhc
Q 037065 158 LDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARN-SVHVLPREIFGFSTFGIAMALLRWF 236 (412)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (412)
.+.|.++++|+.++.....+.+|+|+|||+|.||+|++..++....+|.+..+. .....+..
T Consensus 165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~----------------- 227 (448)
T KOG1399|consen 165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPE----------------- 227 (448)
T ss_pred hhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccccc-----------------
Confidence 668999999999999999999999999999999999999999998888887651 01111111
Q ss_pred chHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcCceEEeCCe-EEecCCcE
Q 037065 237 PLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGGVKEITKNG-ARFTDGQE 315 (412)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~i~~~~-v~~~~g~~ 315 (412)
....++..+..|.++++++ +...++..
T Consensus 228 ----------------------------------------------------~~~~~~~~~~~i~~~~e~~~~~~~~~~~ 255 (448)
T KOG1399|consen 228 ----------------------------------------------------ILGENLWQVPSIKSFTEDGSVFEKGGPV 255 (448)
T ss_pred ----------------------------------------------------eeecceEEccccccccCcceEEEcCcee
Confidence 1112444444467777777 44566778
Q ss_pred ecccEEEEcCCCCCCCCCccccCc--c-CCCCCCCCCCCCCCCCCCCCeEEEee-ec-CccccchhhHHHHHHHHHHh
Q 037065 316 KEIDAIILATGYKSNVPTWLKECD--F-FTKDGMPKTPFPNGWKGENGLYTVGF-TR-RGLQGTALDADKIAQDISEQ 388 (412)
Q Consensus 316 ~~~D~vi~atG~~p~~~~~l~~~~--~-~~~~G~~~~~~~~~~~~~~~iya~Gd-~~-~~~~~a~~~~~~~a~~i~~~ 388 (412)
..+|.||+||||.-..+ +++..+ . .++...+.-.+-..-...++...+|. .. ........|++.+++.+.+.
T Consensus 256 ~~~D~ii~ctgy~y~fP-fl~~~~~~~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~ 332 (448)
T KOG1399|consen 256 ERVDRIIFCTGYKYKFP-FLETLGLGTVRDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGR 332 (448)
T ss_pred EEeeeEEEeeeeEeecc-eeccCCceeeccCcccchheeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCC
Confidence 89999999999999874 444443 2 22221222110000001233333332 11 22336677888877777665
No 26
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=3.9e-32 Score=262.43 Aligned_cols=300 Identities=14% Similarity=0.176 Sum_probs=198.7
Q ss_pred cccCeEEECCChHHHHHHHHHHHc-CCCeEEEecC--------CCCCc-ccCCCCCCCeeeecCCcccc-C---CCCCCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQ-GLPSLILERS--------DCLAS-LWKHRTYDRLKLHLPKQFCE-L---PLFGFP 81 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~-g~~v~vie~~--------~~~g~-~~~~~~~~~~~~~~~~~~~~-~---~~~~~~ 81 (412)
+.|||+|||+|++|..+|..+++. |.+|+|||+. ..+|| +.+..|.|...+........ . ..+-+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 479999999999999999999997 8999999973 45777 45666666654432221111 0 011000
Q ss_pred -CCCCCCCCHHHHHHHHH-----------HHHHH-cCCcccccceEEEEEEcCCCCcEEEEEc-------ceEEEeCEEE
Q 037065 82 -ENFPKYPTKRQFIAYIE-----------SYASH-FKIQPKFKQAVQTALFDHASGFWRVQTQ-------DSEYISKWLV 141 (412)
Q Consensus 82 -~~~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~-------~~~~~~d~vI 141 (412)
...........+.++.+ +..+. .+++++.+. . .+.+. ..++|... ..++.||+||
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~-a---~f~~~-~~v~V~~~~~~~~~~~~~~~~d~lI 156 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW-G---ALEDK-NVVLVRESADPKSAVKERLQAEHIL 156 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE-E---EEccC-CEEEEeeccCCCCCcceEEECCEEE
Confidence 00000112222222222 22222 255554432 1 11111 33334321 1479999999
Q ss_pred EeeCCCCCCCCCCCCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhc---CCccEEEEeCCCccccc
Q 037065 142 VATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRH---NAIPHMVARNSVHVLPR 218 (412)
Q Consensus 142 lAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~---g~~v~~~~r~~~~~~~~ 218 (412)
+||| ++|..|+++|.+. .+.+.+.. .....+++++|||+|.+|+|+|..+..+ |.+|+++.+.+ +++|.
T Consensus 157 IATG--s~p~~p~i~G~~~----~~~~~~~~-~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~-~il~~ 228 (486)
T TIGR01423 157 LATG--SWPQMLGIPGIEH----CISSNEAF-YLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN-MILRG 228 (486)
T ss_pred EecC--CCCCCCCCCChhh----eechhhhh-ccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC-ccccc
Confidence 9999 8899898888653 22222222 1223578999999999999999876654 89999999988 55554
Q ss_pred cccCCChhhHHHHHHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEc
Q 037065 219 EIFGFSTFGIAMALLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVG 298 (412)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 298 (412)
.+. ++. ....+.+++.+++++.
T Consensus 229 ~d~-----~~~-----------------------------------------------------~~l~~~L~~~GI~i~~ 250 (486)
T TIGR01423 229 FDS-----TLR-----------------------------------------------------KELTKQLRANGINIMT 250 (486)
T ss_pred cCH-----HHH-----------------------------------------------------HHHHHHHHHcCCEEEc
Confidence 432 111 1123455667788887
Q ss_pred C--ceEEeC--C---eEEecCCcEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecC
Q 037065 299 G--VKEITK--N---GARFTDGQEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRR 369 (412)
Q Consensus 299 ~--v~~i~~--~---~v~~~~g~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~ 369 (412)
+ |.++.. + .+.+.+|+++++|.|++|+|++||...+ ++..++ .+++|++.+|. .++|+.|+|||+|||+.
T Consensus 251 ~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~-~l~Ts~~~IyA~GDv~~ 329 (486)
T TIGR01423 251 NENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDE-FSRTNVPNIYAIGDVTD 329 (486)
T ss_pred CCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCC-CCcCCCCCEEEeeecCC
Confidence 6 677752 2 3566788899999999999999998543 567788 67889999984 56799999999999997
Q ss_pred ccc---cchhhHHHHHHHHHH
Q 037065 370 GLQ---GTALDADKIAQDISE 387 (412)
Q Consensus 370 ~~~---~a~~~~~~~a~~i~~ 387 (412)
.+. .|..||+.++++|.+
T Consensus 330 ~~~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 330 RVMLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred CcccHHHHHHHHHHHHHHHhC
Confidence 544 889999999999975
No 27
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.2e-32 Score=264.63 Aligned_cols=305 Identities=19% Similarity=0.219 Sum_probs=194.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccC-CCCCCCeeeecCCccc----cCCCCCCCCCCCCCCCHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWK-HRTYDRLKLHLPKQFC----ELPLFGFPENFPKYPTKR 91 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 91 (412)
+|||+|||||++|+++|..|++.|.+|+|||+ +.+||.|. ..|.+...+......+ ..+.+.+... ....+..
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~~ 80 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDFK 80 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCHH
Confidence 58999999999999999999999999999999 67888764 3444432211111100 1111111100 1234566
Q ss_pred HHHHHHHHHHHHcCCcc----cccceEEEEEEcC-CCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCcccee
Q 037065 92 QFIAYIESYASHFKIQP----KFKQAVQTALFDH-ASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVL 166 (412)
Q Consensus 92 ~~~~~~~~~~~~~~~~~----~~~~~v~~i~~~~-~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~ 166 (412)
++.+++++....+.-.+ .....|.-+.-.. ..+.+++.++..++.||+||+||| ++ .|.+||.....+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~~~~~~d~lIiATG--s~--~p~ipg~~~~~~~~~ 156 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATG--SR--VPPIPGVWLILGDRL 156 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECcEEEEeCEEEEeCC--CC--CCCCCCCcccCCCcE
Confidence 66666665554432111 0001111111000 001123445557899999999999 55 444455432111222
Q ss_pred eccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHH
Q 037065 167 HTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILL 246 (412)
Q Consensus 167 ~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (412)
...+........+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ ++++..+. +....
T Consensus 157 ~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~~~~--------------- 215 (460)
T PRK06292 157 LTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLEDP-----EVSKQ--------------- 215 (460)
T ss_pred ECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcchhH-----HHHHH---------------
Confidence 2222222233457899999999999999999999999999999988 55554322 11111
Q ss_pred HHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC---eEEe--cCC--cEec
Q 037065 247 LMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN---GARF--TDG--QEKE 317 (412)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~---~v~~--~~g--~~~~ 317 (412)
+.+.+++. ++++.+ |.++..+ .+++ .++ ++++
T Consensus 216 --------------------------------------~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~ 256 (460)
T PRK06292 216 --------------------------------------AQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIE 256 (460)
T ss_pred --------------------------------------HHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEE
Confidence 12334445 777665 6666532 3443 233 4799
Q ss_pred ccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCcc---ccchhhHHHHHHHHHHh
Q 037065 318 IDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGL---QGTALDADKIAQDISEQ 388 (412)
Q Consensus 318 ~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~---~~a~~~~~~~a~~i~~~ 388 (412)
+|.|++|+|.+||.+.+ ++..++ .+++|++.+| ++++|+.|+|||+|||+..+ ..|..||+.+|.+|.+.
T Consensus 257 ~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd-~~~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 257 ADYVLVATGRRPNTDGLGLENTGIELDERGRPVVD-EHTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred eCEEEEccCCccCCCCCCcHhhCCEecCCCcEeEC-CCcccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 99999999999998543 567788 7788999888 46788999999999999653 38999999999999764
No 28
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=2.1e-32 Score=278.35 Aligned_cols=281 Identities=17% Similarity=0.221 Sum_probs=204.9
Q ss_pred cCeEEECCChHHHHHHHHHHHc----CCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQ----GLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQF 93 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~----g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
.+|+|||+|++|+.+|..|++. +++|+||++.+.++ |..+.+.. .+.. ...+++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~~--------------~~~~-~~~~~l 61 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLSS--------------YFSH-HTAEEL 61 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcchH--------------hHcC-CCHHHc
Confidence 4899999999999999999875 47999999998654 33222111 0001 122333
Q ss_pred HHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCC
Q 037065 94 IAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYK 172 (412)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~ 172 (412)
......+.++.+++++.++.|+.++.... .|.+.+ .++.||+||+||| ++|..|.+||.+.. .++.+....
T Consensus 62 ~~~~~~~~~~~gI~~~~g~~V~~Id~~~~----~V~~~~G~~i~yD~LVIATG--s~p~~p~ipG~~~~--~v~~~rt~~ 133 (847)
T PRK14989 62 SLVREGFYEKHGIKVLVGERAITINRQEK----VIHSSAGRTVFYDKLIMATG--SYPWIPPIKGSETQ--DCFVYRTIE 133 (847)
T ss_pred cCCCHHHHHhCCCEEEcCCEEEEEeCCCc----EEEECCCcEEECCEEEECCC--CCcCCCCCCCCCCC--CeEEECCHH
Confidence 33334556667999999999999987542 356555 6799999999999 88999999887642 222221211
Q ss_pred CC-----CCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHH
Q 037065 173 SG-----SEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLL 247 (412)
Q Consensus 173 ~~-----~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (412)
+. ....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ ++++....
T Consensus 134 d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~-~ll~~~ld-------------------------- 186 (847)
T PRK14989 134 DLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP-MLMAEQLD-------------------------- 186 (847)
T ss_pred HHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-cchhhhcC--------------------------
Confidence 11 12356899999999999999999999999999999988 55543211
Q ss_pred HHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC------eEEecCCcEeccc
Q 037065 248 MANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN------GARFTDGQEKEID 319 (412)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~------~v~~~~g~~~~~D 319 (412)
+.......+.+++.+|+++.+ +.++..+ .+.+.+|+++++|
T Consensus 187 -------------------------------~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D 235 (847)
T PRK14989 187 -------------------------------QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVD 235 (847)
T ss_pred -------------------------------HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcC
Confidence 011111245566678888876 7777532 3677899999999
Q ss_pred EEEEcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCc-------cccchhhHHHHHHHHHHh
Q 037065 320 AIILATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRG-------LQGTALDADKIAQDISEQ 388 (412)
Q Consensus 320 ~vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~-------~~~a~~~~~~~a~~i~~~ 388 (412)
.|++|+|++||. .+++..++ .+++|++.+| .+++|+.|+|||+|||+.. +..|..||+.+|++|.+.
T Consensus 236 ~Vv~A~G~rPn~-~L~~~~Gl~~~~~G~I~VD-~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~ 310 (847)
T PRK14989 236 FIVFSTGIRPQD-KLATQCGLAVAPRGGIVIN-DSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGS 310 (847)
T ss_pred EEEECCCcccCc-hHHhhcCccCCCCCcEEEC-CCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCC
Confidence 999999999998 57888888 7888999988 4678999999999999943 226788899999888764
No 29
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=8.9e-32 Score=261.21 Aligned_cols=304 Identities=17% Similarity=0.175 Sum_probs=199.9
Q ss_pred cccccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCC-CCCCCeeeecCCcccc-CCCCCCCCCC---CC
Q 037065 12 TKSVLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKH-RTYDRLKLHLPKQFCE-LPLFGFPENF---PK 86 (412)
Q Consensus 12 ~~~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~ 86 (412)
||..+.+||+|||||++|+++|..|++.|.+|+|||+. .+||+|.. .|.|...+........ ....++.... ..
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~ 79 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAP 79 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCC
Confidence 35567899999999999999999999999999999996 67887643 3333222111100000 0011100000 01
Q ss_pred CCCHHHHHHHHHHHHH------------Hc-CCcccccceEEEEEEcCCCCcEEEEEcc---eEEEeCEEEEeeCCCCCC
Q 037065 87 YPTKRQFIAYIESYAS------------HF-KIQPKFKQAVQTALFDHASGFWRVQTQD---SEYISKWLVVATGENAEP 150 (412)
Q Consensus 87 ~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~d~vIlAtG~~~~p 150 (412)
..+...+.++.++... .. +++++.+ +++.++. ..|+|++.+ .+++||+||+||| ++|
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~----~~~~V~~~~g~~~~~~~d~lViATG--s~p 152 (468)
T PRK14694 80 VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDE----RTLTVTLNDGGEQTVHFDRAFIGTG--ARP 152 (468)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecC----CEEEEEecCCCeEEEECCEEEEeCC--CCC
Confidence 1233444433333222 11 4444433 4555542 457777655 3799999999999 899
Q ss_pred CCCCCCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHH
Q 037065 151 VFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAM 230 (412)
Q Consensus 151 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~ 230 (412)
..|++||.+.. ..++..+.. .....+++++|||+|.+|+|+|..|.+.|.+|+++.+. ++++..+. +...
T Consensus 153 ~~p~i~G~~~~--~~~~~~~~~-~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~--~~l~~~~~-----~~~~ 222 (468)
T PRK14694 153 AEPPVPGLAET--PYLTSTSAL-ELDHIPERLLVIGASVVALELAQAFARLGSRVTVLARS--RVLSQEDP-----AVGE 222 (468)
T ss_pred CCCCCCCCCCC--ceEcchhhh-chhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC--CCCCCCCH-----HHHH
Confidence 99999987652 223322221 12234789999999999999999999999999999863 34443221 1111
Q ss_pred HHHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC--
Q 037065 231 ALLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN-- 306 (412)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~-- 306 (412)
...+.+++.+++++.+ |.++..+
T Consensus 223 -----------------------------------------------------~l~~~l~~~GI~v~~~~~v~~i~~~~~ 249 (468)
T PRK14694 223 -----------------------------------------------------AIEAAFRREGIEVLKQTQASEVDYNGR 249 (468)
T ss_pred -----------------------------------------------------HHHHHHHhCCCEEEeCCEEEEEEEcCC
Confidence 1234455567888765 6666532
Q ss_pred eEEe-cCCcEecccEEEEcCCCCCCCCCc-cccCccCCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHH
Q 037065 307 GARF-TDGQEKEIDAIILATGYKSNVPTW-LKECDFFTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKI 381 (412)
Q Consensus 307 ~v~~-~~g~~~~~D~vi~atG~~p~~~~~-l~~~~~~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~ 381 (412)
.+.+ .++.++++|.|++|+|.+||...+ ++..++..++|++.+| +.++|+.|+|||+|||+..+. .|..||+.+
T Consensus 250 ~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~a 328 (468)
T PRK14694 250 EFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRID-EHLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRA 328 (468)
T ss_pred EEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeC-CCcccCCCCEEEEeecCCCcccHHHHHHHHHHH
Confidence 2222 234479999999999999998433 4566775568999888 457899999999999996544 788999999
Q ss_pred HHHHHH
Q 037065 382 AQDISE 387 (412)
Q Consensus 382 a~~i~~ 387 (412)
|.+|.+
T Consensus 329 a~~i~~ 334 (468)
T PRK14694 329 AINMTG 334 (468)
T ss_pred HHHhcC
Confidence 999874
No 30
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=1.3e-31 Score=253.45 Aligned_cols=279 Identities=20% Similarity=0.311 Sum_probs=199.2
Q ss_pred cCeEEECCChHHHHHHHHHHHc--CCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQ--GLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
++|+|||||+||+++|..|++. +.+|+||++++... |....+ +..........++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~~l--------------~~~~~~~~~~~~~~~ 61 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKPDL--------------SHVFSQGQRADDLTR 61 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcCcC--------------cHHHhCCCCHHHhhc
Confidence 5899999999999999999886 46899999987432 111100 001111123344443
Q ss_pred -HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCC-
Q 037065 96 -YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKS- 173 (412)
Q Consensus 96 -~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~- 173 (412)
..++++++++++++.+++|++++.+.+ .+.+++..+.||+||+||| +.|..|+++|... .+......+
T Consensus 62 ~~~~~~~~~~gv~~~~~~~V~~id~~~~----~v~~~~~~~~yd~LVlATG--~~~~~p~i~G~~~----v~~~~~~~~~ 131 (377)
T PRK04965 62 QSAGEFAEQFNLRLFPHTWVTDIDAEAQ----VVKSQGNQWQYDKLVLATG--ASAFVPPIPGREL----MLTLNSQQEY 131 (377)
T ss_pred CCHHHHHHhCCCEEECCCEEEEEECCCC----EEEECCeEEeCCEEEECCC--CCCCCCCCCCCce----EEEECCHHHH
Confidence 345667778999998999999987552 3666678899999999999 7888888888653 222111111
Q ss_pred ----CCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHH
Q 037065 174 ----GSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMA 249 (412)
Q Consensus 174 ----~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (412)
.....+++++|||+|.+|+|+|..|.+.+.+|+++++.+ ++++... +....
T Consensus 132 ~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~-~~l~~~~----------------~~~~~-------- 186 (377)
T PRK04965 132 RAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA-SLLASLM----------------PPEVS-------- 186 (377)
T ss_pred HHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-cccchhC----------------CHHHH--------
Confidence 111346899999999999999999999999999999988 4433211 11111
Q ss_pred HHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC----eEEecCCcEecccEEEE
Q 037065 250 NITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN----GARFTDGQEKEIDAIIL 323 (412)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~----~v~~~~g~~~~~D~vi~ 323 (412)
..+.+.+++.+++++.+ |.++..+ .+.+.+|+++++|.||+
T Consensus 187 ---------------------------------~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~ 233 (377)
T PRK04965 187 ---------------------------------SRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIA 233 (377)
T ss_pred ---------------------------------HHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEE
Confidence 11234455667888765 7777653 26778899999999999
Q ss_pred cCCCCCCCCCccccCccCCCCCCCCCCCCCCCCCCCCeEEEeeecCc-------cccchhhHHHHHHHHHHh
Q 037065 324 ATGYKSNVPTWLKECDFFTKDGMPKTPFPNGWKGENGLYTVGFTRRG-------LQGTALDADKIAQDISEQ 388 (412)
Q Consensus 324 atG~~p~~~~~l~~~~~~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~-------~~~a~~~~~~~a~~i~~~ 388 (412)
|+|.+|+. .+++..++..+.| +.+| ++++|+.|+|||+|||+.. ...|..||+.+|.||.+.
T Consensus 234 a~G~~p~~-~l~~~~gl~~~~g-i~vd-~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~ 302 (377)
T PRK04965 234 AAGLRPNT-ALARRAGLAVNRG-IVVD-SYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQ 302 (377)
T ss_pred CcCCCcch-HHHHHCCCCcCCC-EEEC-CCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCC
Confidence 99999997 5777778844456 6777 4678899999999999843 226788999999999764
No 31
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.2e-31 Score=260.62 Aligned_cols=301 Identities=17% Similarity=0.167 Sum_probs=197.0
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccC-CCCCCCeeeecCCcccc----CCCCCCCCCCCCCCCH
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWK-HRTYDRLKLHLPKQFCE----LPLFGFPENFPKYPTK 90 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 90 (412)
..+|++|||+|++|+++|..|++.|.+|+++|+...+||+|. ..|.+...+..+..... .+.+.++...+ ....
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~ 93 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAP-SIDR 93 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCC-ccCH
Confidence 469999999999999999999999999999999888898774 44555544332211111 11111110000 1122
Q ss_pred HHHHHHHHHHH------------HHc-CCcccccceEEEEEEcCCCCcEEEEEcc---eEEEeCEEEEeeCCCCCCCCCC
Q 037065 91 RQFIAYIESYA------------SHF-KIQPKFKQAVQTALFDHASGFWRVQTQD---SEYISKWLVVATGENAEPVFPD 154 (412)
Q Consensus 91 ~~~~~~~~~~~------------~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~d~vIlAtG~~~~p~~p~ 154 (412)
..+..+..... +.. ++++..+. ..+.+. ..+.|...+ .++.||+||+||| ++|..|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~----a~f~~~-~~v~v~~~~g~~~~~~~d~lViATG--s~p~~p~ 166 (479)
T PRK14727 94 GLLLHQQQARVEELRHAKYQSILDGNPALTLLKGY----ARFKDG-NTLVVRLHDGGERVLAADRCLIATG--STPTIPP 166 (479)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE----EEEecC-CEEEEEeCCCceEEEEeCEEEEecC--CCCCCCC
Confidence 23322222211 111 33333221 122222 456666544 3699999999999 8899999
Q ss_pred CCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHH
Q 037065 155 VVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLR 234 (412)
Q Consensus 155 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 234 (412)
++|.... ..++..+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.+. .+++..+. +...
T Consensus 167 i~G~~~~--~~~~~~~~l~-~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~--~~l~~~d~-----~~~~---- 232 (479)
T PRK14727 167 IPGLMDT--PYWTSTEALF-SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS--TLLFREDP-----LLGE---- 232 (479)
T ss_pred CCCcCcc--ceecchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC--CCCCcchH-----HHHH----
Confidence 9887542 1222222221 2234689999999999999999999999999999874 34443221 1111
Q ss_pred hcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEe--CCeEEe
Q 037065 235 WFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEIT--KNGARF 310 (412)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~--~~~v~~ 310 (412)
...+.+++.+++++.+ |.++. .+++.+
T Consensus 233 -------------------------------------------------~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v 263 (479)
T PRK14727 233 -------------------------------------------------TLTACFEKEGIEVLNNTQASLVEHDDNGFVL 263 (479)
T ss_pred -------------------------------------------------HHHHHHHhCCCEEEcCcEEEEEEEeCCEEEE
Confidence 1134455567888765 66664 233332
Q ss_pred -cCCcEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHH
Q 037065 311 -TDGQEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQD 384 (412)
Q Consensus 311 -~~g~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~ 384 (412)
.++.++++|.|++|+|+.||+..+ ++..++ .+++|++.+|. .++|+.|+|||+|||+..+. .|..||+.+|.+
T Consensus 264 ~~~~g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~-~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~ 342 (479)
T PRK14727 264 TTGHGELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNP-AMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGIN 342 (479)
T ss_pred EEcCCeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECC-CeecCCCCEEEeeecCCcchhhhHHHHHHHHHHHH
Confidence 223468999999999999998543 566788 67889999984 57899999999999996544 788999999999
Q ss_pred HHHh
Q 037065 385 ISEQ 388 (412)
Q Consensus 385 i~~~ 388 (412)
|.+.
T Consensus 343 i~g~ 346 (479)
T PRK14727 343 MTGG 346 (479)
T ss_pred HcCC
Confidence 9753
No 32
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2e-31 Score=258.84 Aligned_cols=302 Identities=19% Similarity=0.203 Sum_probs=193.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc-ccCCCCCCCeeeecCCcccc-----CCCCCCCCCCCCCCCH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS-LWKHRTYDRLKLHLPKQFCE-----LPLFGFPENFPKYPTK 90 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 90 (412)
++||+||||||+|+++|..|++.|.+|+|||+. .+|| +.+..+.+...+........ ...+.... ......
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~--~~~~~~ 80 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG--EVTFDY 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc--CcccCH
Confidence 589999999999999999999999999999996 4555 44455554422211101100 00110000 011222
Q ss_pred HHHHHHHHHHHHHc--CCcccc-cceEEEEEEc---CCCCcEEEEEcc---eEEEeCEEEEeeCCCCCCCCCCCCCCCCC
Q 037065 91 RQFIAYIESYASHF--KIQPKF-KQAVQTALFD---HASGFWRVQTQD---SEYISKWLVVATGENAEPVFPDVVGLDKF 161 (412)
Q Consensus 91 ~~~~~~~~~~~~~~--~~~~~~-~~~v~~i~~~---~~~~~~~v~~~~---~~~~~d~vIlAtG~~~~p~~p~~~g~~~~ 161 (412)
..+..+.++..++. ++...+ ...|+.++.. -+...+.+...+ .++.||+||+||| ++|..| ||...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATG--s~p~~~--pg~~~- 155 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATG--SSTRLL--PGTSL- 155 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCC--CCCCCC--CCCCC-
Confidence 33333322221111 111111 1134433321 011344454433 4799999999999 777654 45431
Q ss_pred ccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHH
Q 037065 162 NGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLV 241 (412)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (412)
...++.+.+... ....+++++|||+|.+|+|+|..+++.|.+|+++.+.+ +++|..+. +....
T Consensus 156 ~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~-----~~~~~---------- 218 (466)
T PRK07818 156 SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD-RALPNEDA-----EVSKE---------- 218 (466)
T ss_pred CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CcCCccCH-----HHHHH----------
Confidence 123333332221 22357899999999999999999999999999999988 66665432 11111
Q ss_pred HHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC--e--EEec--CC
Q 037065 242 DKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN--G--ARFT--DG 313 (412)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~--~--v~~~--~g 313 (412)
..+.+++.+++++.+ |.++..+ . +.+. +|
T Consensus 219 -------------------------------------------l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g 255 (466)
T PRK07818 219 -------------------------------------------IAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDG 255 (466)
T ss_pred -------------------------------------------HHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCC
Confidence 234455668888876 7777543 2 3343 56
Q ss_pred c--EecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHHHH
Q 037065 314 Q--EKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQDIS 386 (412)
Q Consensus 314 ~--~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~i~ 386 (412)
+ ++++|.|++|+|++||+..+ ++..++ ++++|++.+| .+++|+.|+|||+|||+..+. .|..||+.+|.+|.
T Consensus 256 ~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd-~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~ 334 (466)
T PRK07818 256 KAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAID-DYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIA 334 (466)
T ss_pred CeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeC-CCcccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHc
Confidence 3 79999999999999998544 677788 6788999988 467899999999999986533 89999999999997
Q ss_pred H
Q 037065 387 E 387 (412)
Q Consensus 387 ~ 387 (412)
+
T Consensus 335 g 335 (466)
T PRK07818 335 G 335 (466)
T ss_pred C
Confidence 5
No 33
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=1.7e-31 Score=260.53 Aligned_cols=305 Identities=18% Similarity=0.253 Sum_probs=199.5
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc-ccCCCCCCCeeeecCCccccC----CCCCCCC----CCC
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS-LWKHRTYDRLKLHLPKQFCEL----PLFGFPE----NFP 85 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~ 85 (412)
...|||+|||||++|+++|..+++.|.+|+|||++ .+|| +.+..|.|...+......... ..+-+.. .+.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~ 124 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP 124 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence 35789999999999999999999999999999997 4565 556667666544433222110 0010100 000
Q ss_pred CCC-CHHHH----HHHHHHHHHHcCCcccccce-EEE---EEE-----------cCCCCcEEEE------Ecc-eEEEeC
Q 037065 86 KYP-TKRQF----IAYIESYASHFKIQPKFKQA-VQT---ALF-----------DHASGFWRVQ------TQD-SEYISK 138 (412)
Q Consensus 86 ~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~-v~~---i~~-----------~~~~~~~~v~------~~~-~~~~~d 138 (412)
... ..+.+ .+.+++..++.+++++.+.- +.+ +.. ..+.+..++. .++ .++.||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad 204 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGK 204 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECC
Confidence 000 11222 22233445556777755532 111 100 0001222232 223 579999
Q ss_pred EEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccc
Q 037065 139 WLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPR 218 (412)
Q Consensus 139 ~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~ 218 (412)
+||+||| ++|..|.++|.+. .+...++... . .+++++|||+|.+|+|+|..+...|.+|+++.+++ ++++.
T Consensus 205 ~lVIATG--S~P~~P~IpG~~~----v~ts~~~~~l-~-~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~-~il~~ 275 (561)
T PTZ00058 205 NILIAVG--NKPIFPDVKGKEF----TISSDDFFKI-K-EAKRIGIAGSGYIAVELINVVNRLGAESYIFARGN-RLLRK 275 (561)
T ss_pred EEEEecC--CCCCCCCCCCcee----EEEHHHHhhc-c-CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc-ccccc
Confidence 9999999 8999999888641 2333232221 1 27899999999999999999999999999999988 66554
Q ss_pred cccCCChhhHHHHHHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEc
Q 037065 219 EIFGFSTFGIAMALLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVG 298 (412)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 298 (412)
.+. +.. ....+.+++.+++++.
T Consensus 276 ~d~-----~i~-----------------------------------------------------~~l~~~L~~~GV~i~~ 297 (561)
T PTZ00058 276 FDE-----TII-----------------------------------------------------NELENDMKKNNINIIT 297 (561)
T ss_pred CCH-----HHH-----------------------------------------------------HHHHHHHHHCCCEEEe
Confidence 332 111 1123445566788877
Q ss_pred C--ceEEeCC---eE--EecCC-cEecccEEEEcCCCCCCCCCc-cccCccCCCCCCCCCCCCCCCCCCCCeEEEeeecC
Q 037065 299 G--VKEITKN---GA--RFTDG-QEKEIDAIILATGYKSNVPTW-LKECDFFTKDGMPKTPFPNGWKGENGLYTVGFTRR 369 (412)
Q Consensus 299 ~--v~~i~~~---~v--~~~~g-~~~~~D~vi~atG~~p~~~~~-l~~~~~~~~~G~~~~~~~~~~~~~~~iya~Gd~~~ 369 (412)
+ |.++..+ ++ .+.++ +++++|.|++|+|++||+..+ ++..++.+++|++.+| ++++|+.|+|||+|||+.
T Consensus 298 ~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VD-e~lqTs~p~IYA~GDv~~ 376 (561)
T PTZ00058 298 HANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVD-DNQRTSVKHIYAVGDCCM 376 (561)
T ss_pred CCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEEC-cCCccCCCCEEEeEeccC
Confidence 6 6677642 23 33344 479999999999999998433 3444555678999998 467899999999999987
Q ss_pred ----------------------------------ccc---cchhhHHHHHHHHHHh
Q 037065 370 ----------------------------------GLQ---GTALDADKIAQDISEQ 388 (412)
Q Consensus 370 ----------------------------------~~~---~a~~~~~~~a~~i~~~ 388 (412)
.+. .|..||+.+|++|.+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 377 VKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred ccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 222 7899999999999753
No 34
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.5e-31 Score=266.18 Aligned_cols=299 Identities=16% Similarity=0.166 Sum_probs=197.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCccc-CCCCCCCeeeecCCccc-cCCCCCCCCCC---CCCCCHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLW-KHRTYDRLKLHLPKQFC-ELPLFGFPENF---PKYPTKR 91 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~ 91 (412)
.|||+||||||+|+++|..|++.|.+|+|||+. .+||+| +..|.+...+....... .....++.... .......
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 589999999999999999999999999999997 788866 44555554332111110 00011110000 0112333
Q ss_pred HHHHHHHHH------------HHHc-CCcccccceEEEEEEcCCCCcEEEEEcc---eEEEeCEEEEeeCCCCCCCCCCC
Q 037065 92 QFIAYIESY------------ASHF-KIQPKFKQAVQTALFDHASGFWRVQTQD---SEYISKWLVVATGENAEPVFPDV 155 (412)
Q Consensus 92 ~~~~~~~~~------------~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~d~vIlAtG~~~~p~~p~~ 155 (412)
.+.++.++. .+.. +++++.+ ++..++ . ..+.|...+ .++.||+||+||| ++|..|.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~--~--~~~~v~~~~g~~~~~~~d~lviAtG--s~p~~p~i 249 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKD--D--QTLIVRLNDGGERVVAFDRCLIATG--ASPAVPPI 249 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEec--C--CEEEEEeCCCceEEEEcCEEEEcCC--CCCCCCCC
Confidence 343332222 2222 4454433 343332 2 455566544 3699999999999 88999999
Q ss_pred CCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHh
Q 037065 156 VGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRW 235 (412)
Q Consensus 156 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (412)
+|.... ..+...+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.+.. +++..+. +...
T Consensus 250 ~g~~~~--~~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~d~-----~~~~----- 314 (561)
T PRK13748 250 PGLKET--PYWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARST--LFFREDP-----AIGE----- 314 (561)
T ss_pred CCCCcc--ceEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--cccccCH-----HHHH-----
Confidence 887642 1222222111 22346899999999999999999999999999999753 3333221 1111
Q ss_pred cchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeC--CeEEec
Q 037065 236 FPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITK--NGARFT 311 (412)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~--~~v~~~ 311 (412)
...+.+++.+++++.+ |.++.. +.+.+.
T Consensus 315 ------------------------------------------------~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~ 346 (561)
T PRK13748 315 ------------------------------------------------AVTAAFRAEGIEVLEHTQASQVAHVDGEFVLT 346 (561)
T ss_pred ------------------------------------------------HHHHHHHHCCCEEEcCCEEEEEEecCCEEEEE
Confidence 1234455667888766 666653 233222
Q ss_pred -CCcEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHHH
Q 037065 312 -DGQEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQDI 385 (412)
Q Consensus 312 -~g~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~i 385 (412)
++.++++|.|++|+|++||...+ ++..++ .+++|++.+| ++++|+.|||||+|||+..+. .|..+|+.+|.+|
T Consensus 347 ~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i 425 (561)
T PRK13748 347 TGHGELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVID-QGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINM 425 (561)
T ss_pred ecCCeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHH
Confidence 23369999999999999998543 577788 7888999988 467899999999999986544 7899999999999
Q ss_pred HH
Q 037065 386 SE 387 (412)
Q Consensus 386 ~~ 387 (412)
.+
T Consensus 426 ~g 427 (561)
T PRK13748 426 TG 427 (561)
T ss_pred cC
Confidence 74
No 35
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.2e-31 Score=260.89 Aligned_cols=302 Identities=15% Similarity=0.195 Sum_probs=197.1
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC--------CCCcc-cCCCCCCCeeeecCCcccc-C----CCCCCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD--------CLASL-WKHRTYDRLKLHLPKQFCE-L----PLFGFP 81 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~--------~~g~~-~~~~~~~~~~~~~~~~~~~-~----~~~~~~ 81 (412)
.+|||+||||||+|+++|..|++.|.+|+|||+.. .+||+ .+..|++...+........ . ..+.+.
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~ 83 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK 83 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC
Confidence 47999999999999999999999999999999631 36774 4556666532221111100 0 011111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccce---EEEEEE---cCCCCcEEEEEcc--eEEEeCEEEEeeCCCCCCCCC
Q 037065 82 ENFPKYPTKRQFIAYIESYASHFKIQPKFKQA---VQTALF---DHASGFWRVQTQD--SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~i~~---~~~~~~~~v~~~~--~~~~~d~vIlAtG~~~~p~~p 153 (412)
. .......++.+++++..++++..+....+ |+-+.- ..+...+.+...+ ..+.||+||+||| ++|..|
T Consensus 84 ~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATG--s~p~~p 159 (499)
T PTZ00052 84 T--SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATG--GRPSIP 159 (499)
T ss_pred C--CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecC--CCCCCC
Confidence 0 11245677777777776665444432222 222210 0111222232222 5799999999999 888887
Q ss_pred C-CCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHH
Q 037065 154 D-VVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMAL 232 (412)
Q Consensus 154 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 232 (412)
. +||.... .+...+.. .....+++++|||+|.+|+|+|..|+..|.+|+++.+. .+++..+. +..
T Consensus 160 ~~i~G~~~~---~~~~~~~~-~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d~-----~~~--- 225 (499)
T PTZ00052 160 EDVPGAKEY---SITSDDIF-SLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRGFDR-----QCS--- 225 (499)
T ss_pred CCCCCccce---eecHHHHh-hhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--cccccCCH-----HHH---
Confidence 4 7876532 22222221 22234679999999999999999999999999999874 33333321 111
Q ss_pred HHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeC--C--
Q 037065 233 LRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITK--N-- 306 (412)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~--~-- 306 (412)
....+.+++.+++++.+ +.++.. +
T Consensus 226 --------------------------------------------------~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~ 255 (499)
T PTZ00052 226 --------------------------------------------------EKVVEYMKEQGTLFLEGVVPINIEKMDDKI 255 (499)
T ss_pred --------------------------------------------------HHHHHHHHHcCCEEEcCCeEEEEEEcCCeE
Confidence 11234455667888776 555542 2
Q ss_pred eEEecCCcEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCc-c---ccchhhHHH
Q 037065 307 GARFTDGQEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRG-L---QGTALDADK 380 (412)
Q Consensus 307 ~v~~~~g~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~-~---~~a~~~~~~ 380 (412)
.+.+.+|+++++|.|++|+|++||+..+ ++..++ ++++|++.++.. +|+.|+|||+|||+.. + ..|..||+.
T Consensus 256 ~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~ 333 (499)
T PTZ00052 256 KVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDVVEGRPELTPVAIKAGIL 333 (499)
T ss_pred EEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCCCCCEEEEEEecCCCcccHHHHHHHHHH
Confidence 2556788889999999999999998443 467777 778888655533 8999999999999842 2 278999999
Q ss_pred HHHHHHH
Q 037065 381 IAQDISE 387 (412)
Q Consensus 381 ~a~~i~~ 387 (412)
+|.+|.+
T Consensus 334 aa~ni~g 340 (499)
T PTZ00052 334 LARRLFK 340 (499)
T ss_pred HHHHHhC
Confidence 9999975
No 36
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=8.9e-32 Score=260.60 Aligned_cols=284 Identities=19% Similarity=0.252 Sum_probs=197.0
Q ss_pred CeEEECCChHHHHHHHHHHHcC--CCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 19 GPIIVGAGPSGLAVSACLSQQG--LPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g--~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
+|+|||||++|+++|..|++.+ .+|+|||+++.++. .. . ..+... ...+....++..+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~--~~-----~---------~~~~~~----~~~~~~~~~~~~~ 61 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSF--GA-----C---------GLPYFV----GGFFDDPNTMIAR 61 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCccee--ec-----C---------CCceEe----ccccCCHHHhhcC
Confidence 6999999999999999999975 58999999886431 00 0 000000 0011223344444
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEc--ceEEE--eCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQ--DSEYI--SKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYK 172 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~--~~~~~--~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~ 172 (412)
..+..++.+++++.+++|++++.++ ..+.+... +.++. ||+||+||| ++|..|.++|... ..+.+.....
T Consensus 62 ~~~~~~~~gv~~~~~~~V~~id~~~--~~v~~~~~~~~~~~~~~yd~lviAtG--~~~~~~~i~g~~~--~~v~~~~~~~ 135 (444)
T PRK09564 62 TPEEFIKSGIDVKTEHEVVKVDAKN--KTITVKNLKTGSIFNDTYDKLMIATG--ARPIIPPIKNINL--ENVYTLKSME 135 (444)
T ss_pred CHHHHHHCCCeEEecCEEEEEECCC--CEEEEEECCCCCEEEecCCEEEECCC--CCCCCCCCCCcCC--CCEEEECCHH
Confidence 4455666799988899999998866 44444431 24555 999999999 8888888888753 1233322221
Q ss_pred CC-------CCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHH
Q 037065 173 SG-------SEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKIL 245 (412)
Q Consensus 173 ~~-------~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (412)
+. ....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ ++++... ++...+
T Consensus 136 ~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~----------------~~~~~~--- 195 (444)
T PRK09564 136 DGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED-RILPDSF----------------DKEITD--- 195 (444)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc-ccCchhc----------------CHHHHH---
Confidence 11 12346899999999999999999999999999999877 4433211 111111
Q ss_pred HHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCCe---EEecCCcEecccE
Q 037065 246 LLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKNG---ARFTDGQEKEIDA 320 (412)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~~---v~~~~g~~~~~D~ 320 (412)
...+.+++.+++++.+ |.++..++ ....++.++++|.
T Consensus 196 --------------------------------------~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~ 237 (444)
T PRK09564 196 --------------------------------------VMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADV 237 (444)
T ss_pred --------------------------------------HHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCE
Confidence 1134455567787765 77776442 1223455799999
Q ss_pred EEEcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCc-------------cccchhhHHHHHHHHH
Q 037065 321 IILATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRG-------------LQGTALDADKIAQDIS 386 (412)
Q Consensus 321 vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~-------------~~~a~~~~~~~a~~i~ 386 (412)
+++|+|++||. .++++.++ .+++|++.+|. +++|+.|||||+|||+.. ...|..||+.+|+||.
T Consensus 238 vi~a~G~~p~~-~~l~~~gl~~~~~g~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~ 315 (444)
T PRK09564 238 VIVATGVKPNT-EFLEDTGLKTLKNGAIIVDE-YGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLA 315 (444)
T ss_pred EEECcCCCcCH-HHHHhcCccccCCCCEEECC-CcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhc
Confidence 99999999997 67888888 67889999884 567899999999999852 1278899999999998
Q ss_pred Hh
Q 037065 387 EQ 388 (412)
Q Consensus 387 ~~ 388 (412)
+.
T Consensus 316 g~ 317 (444)
T PRK09564 316 GR 317 (444)
T ss_pred CC
Confidence 63
No 37
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=3.2e-31 Score=256.83 Aligned_cols=304 Identities=17% Similarity=0.169 Sum_probs=202.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc-cCCCCCCCeeeecCCccc----cCC--CCCCCCCCCCCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL-WKHRTYDRLKLHLPKQFC----ELP--LFGFPENFPKYPT 89 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~-~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~ 89 (412)
|+||+|||+|++|+.+|..|++.|.+|++||+.. +||. .+..|.|...+....... ... +............
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 5689999999999999999999999999999975 5663 344555443322111000 000 1110000000011
Q ss_pred HHHH-----------HHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc---eEEEeCEEEEeeCCCCCCCCCCC
Q 037065 90 KRQF-----------IAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD---SEYISKWLVVATGENAEPVFPDV 155 (412)
Q Consensus 90 ~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~d~vIlAtG~~~~p~~p~~ 155 (412)
...+ .+.+++.+++++++++.+ ++..++...+...+.+...+ .++.||+||+||| ++|..|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATG--s~p~~~p~ 156 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATG--ASPRILPT 156 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCC--CCCCCCCC
Confidence 1222 233445556668887655 34443311112455565544 2799999999999 77776543
Q ss_pred CCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHh
Q 037065 156 VGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRW 235 (412)
Q Consensus 156 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (412)
++... ..+++..+... ....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ ++++..+. +....
T Consensus 157 ~~~~~--~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~~~~---- 223 (466)
T PRK07845 157 AEPDG--ERILTWRQLYD-LDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD-RVLPGEDA-----DAAEV---- 223 (466)
T ss_pred CCCCC--ceEEeehhhhc-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cCCCCCCH-----HHHHH----
Confidence 33221 12344333322 23346899999999999999999999999999999988 66665432 11111
Q ss_pred cchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEe--CCe--EE
Q 037065 236 FPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEIT--KNG--AR 309 (412)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~--~~~--v~ 309 (412)
..+.+++.+|+++.+ |.++. .++ +.
T Consensus 224 -------------------------------------------------l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~ 254 (466)
T PRK07845 224 -------------------------------------------------LEEVFARRGMTVLKRSRAESVERTGDGVVVT 254 (466)
T ss_pred -------------------------------------------------HHHHHHHCCcEEEcCCEEEEEEEeCCEEEEE
Confidence 134455668888866 77774 333 45
Q ss_pred ecCCcEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHH
Q 037065 310 FTDGQEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQD 384 (412)
Q Consensus 310 ~~~g~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~ 384 (412)
+.+|+++++|.|++++|++||...+ ++..++ ++++|++.+| ++++|+.|||||+|||+.... .|..||+.++.+
T Consensus 255 ~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~ 333 (466)
T PRK07845 255 LTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVD-RVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYH 333 (466)
T ss_pred ECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeEC-CCcccCCCCEEEEeeccCCccchhHHHHHHHHHHHH
Confidence 5688899999999999999998543 677788 6888999988 467899999999999996533 889999999999
Q ss_pred HHH
Q 037065 385 ISE 387 (412)
Q Consensus 385 i~~ 387 (412)
|.+
T Consensus 334 i~g 336 (466)
T PRK07845 334 ALG 336 (466)
T ss_pred HcC
Confidence 975
No 38
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-31 Score=257.89 Aligned_cols=276 Identities=21% Similarity=0.252 Sum_probs=190.3
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
..+||+||||||+|+++|..|+++|++|+|+|+.+.+||.+.. .++.+.+ ..+++..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~~~l--------~~~~~~~ 195 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY---------------GIPEFRL--------PKETVVK 195 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeee---------------cCCCccC--------CccHHHH
Confidence 4689999999999999999999999999999998888876532 1222211 1233555
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc--eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCC--
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD--SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKY-- 171 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~--~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~-- 171 (412)
+..+.++++++++++++.|.. . +..++ ..+.||+||+|||+ +.|..+.+||.+. . .++...++
T Consensus 196 ~~~~~~~~~gv~i~~~~~v~~--------~--v~~~~~~~~~~~d~viiAtGa-~~~~~l~ipG~~~-~-gV~~~~~~l~ 262 (464)
T PRK12831 196 KEIENIKKLGVKIETNVVVGK--------T--VTIDELLEEEGFDAVFIGSGA-GLPKFMGIPGENL-N-GVFSANEFLT 262 (464)
T ss_pred HHHHHHHHcCCEEEcCCEECC--------c--CCHHHHHhccCCCEEEEeCCC-CCCCCCCCCCcCC-c-CcEEHHHHHH
Confidence 556667778999988875510 0 22222 34579999999995 2577788888653 1 12221111
Q ss_pred -----------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHH
Q 037065 172 -----------KSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRL 240 (412)
Q Consensus 172 -----------~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
.......+++|+|||+|.+|+|+|..+.+.|.+|++++|++...+|....
T Consensus 263 ~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~------------------- 323 (464)
T PRK12831 263 RVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVE------------------- 323 (464)
T ss_pred HHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHH-------------------
Confidence 11123468999999999999999999999999999999877322222110
Q ss_pred HHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeC--Ce----EEe--
Q 037065 241 VDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITK--NG----ARF-- 310 (412)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~--~~----v~~-- 310 (412)
.++.++..+++++.. +.++.. ++ |.+
T Consensus 324 --------------------------------------------e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~ 359 (464)
T PRK12831 324 --------------------------------------------EVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIK 359 (464)
T ss_pred --------------------------------------------HHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEE
Confidence 011122234444332 333321 10 111
Q ss_pred ----------------cCCc--EecccEEEEcCCCCCCCCCcccc-Ccc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCc
Q 037065 311 ----------------TDGQ--EKEIDAIILATGYKSNVPTWLKE-CDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRG 370 (412)
Q Consensus 311 ----------------~~g~--~~~~D~vi~atG~~p~~~~~l~~-~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~ 370 (412)
.+|+ ++++|.||+|+|+.|+. .+++. .++ .+++|++.+|..+++|+.|+|||+||+..+
T Consensus 360 ~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~-~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g 438 (464)
T PRK12831 360 MELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNP-LISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTG 438 (464)
T ss_pred EEecCcCCCCCccceecCCceEEEECCEEEECCCCCCCh-hhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCC
Confidence 1232 68999999999999997 56665 577 677899988855589999999999999876
Q ss_pred cc---cchhhHHHHHHHHHHhhcc
Q 037065 371 LQ---GTALDADKIAQDISEQWRK 391 (412)
Q Consensus 371 ~~---~a~~~~~~~a~~i~~~~~~ 391 (412)
+. .|+.+|+.+|.+|.++|.+
T Consensus 439 ~~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 439 AATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcC
Confidence 54 8999999999999999865
No 39
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=1.5e-31 Score=232.01 Aligned_cols=303 Identities=17% Similarity=0.247 Sum_probs=208.6
Q ss_pred cccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCccc-CCCCCCCeeeecCC----ccccCCCCCCCCC-----
Q 037065 14 SVLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLW-KHRTYDRLKLHLPK----QFCELPLFGFPEN----- 83 (412)
Q Consensus 14 ~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~----- 83 (412)
..+.+|+++||||..|+++|.+++++|.++.|+|..-.+||+. ...|.|...+-..+ .+-+...+-|+..
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f 96 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF 96 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC
Confidence 3458999999999999999999999999999999986777732 33343332221110 1111112222211
Q ss_pred -CCC-CCCHHHHHHHHHHHHHH----cCCcccccceEEEEEEcCCCCcEEEEEcce---EEEeCEEEEeeCCCCCCCCCC
Q 037065 84 -FPK-YPTKRQFIAYIESYASH----FKIQPKFKQAVQTALFDHASGFWRVQTQDS---EYISKWLVVATGENAEPVFPD 154 (412)
Q Consensus 84 -~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~---~~~~d~vIlAtG~~~~p~~p~ 154 (412)
|.. ...++.+...|....++ ..++++.+. .. +.. ....+|+..+. .++++++++||| ++|.+|.
T Consensus 97 dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~-a~---f~~-~~~v~V~~~d~~~~~Ytak~iLIAtG--g~p~~Pn 169 (478)
T KOG0405|consen 97 DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGR-AR---FVS-PGEVEVEVNDGTKIVYTAKHILIATG--GRPIIPN 169 (478)
T ss_pred cHHHHHhhhhHHHHHHHHHHHhhccccceeEEeee-EE---EcC-CCceEEEecCCeeEEEecceEEEEeC--CccCCCC
Confidence 111 11233333333332222 233333221 11 111 14455666653 389999999999 9999999
Q ss_pred CCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHH
Q 037065 155 VVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLR 234 (412)
Q Consensus 155 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 234 (412)
+||.+. .+.+..+. ..+..+++++|||+|.+|+|+|.-++.+|.+++++.|.+ .+|..++.
T Consensus 170 IpG~E~----gidSDgff-~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~-kvLR~FD~------------- 230 (478)
T KOG0405|consen 170 IPGAEL----GIDSDGFF-DLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE-KVLRGFDE------------- 230 (478)
T ss_pred CCchhh----cccccccc-chhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-hhhcchhH-------------
Confidence 999874 34444444 345568999999999999999999999999999999988 44444332
Q ss_pred hcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC-----e
Q 037065 235 WFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN-----G 307 (412)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~-----~ 307 (412)
.+++...+.++..++++++. +.++... .
T Consensus 231 ---------------------------------------------~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~ 265 (478)
T KOG0405|consen 231 ---------------------------------------------MISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLEL 265 (478)
T ss_pred ---------------------------------------------HHHHHHHHHhhhcceeecccccceeeeecCCCceE
Confidence 34444567777788999887 5555432 2
Q ss_pred EEecCCcEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHH
Q 037065 308 ARFTDGQEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIA 382 (412)
Q Consensus 308 v~~~~g~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a 382 (412)
+..+.|....+|+++||+|.+||+..+ |+..|+ ++..|.+.+| +++.|++|+||++||.+..+. .|.+.|+.++
T Consensus 266 ~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivD-eYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la 344 (478)
T KOG0405|consen 266 VITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVD-EYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLA 344 (478)
T ss_pred EEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEe-ccccCCCCceEEeccccCcEecchHHHhhhhhHH
Confidence 455667666799999999999999766 888899 8899999999 688999999999999997654 8888888887
Q ss_pred HHHHHh
Q 037065 383 QDISEQ 388 (412)
Q Consensus 383 ~~i~~~ 388 (412)
+.+-+.
T Consensus 345 ~rlF~~ 350 (478)
T KOG0405|consen 345 NRLFGG 350 (478)
T ss_pred HHhhcC
Confidence 777654
No 40
>PRK07846 mycothione reductase; Reviewed
Probab=99.98 E-value=5.1e-31 Score=253.88 Aligned_cols=295 Identities=16% Similarity=0.173 Sum_probs=193.2
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCcccc-CC---CCCCCCCCCCCCCHHHH
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCE-LP---LFGFPENFPKYPTKRQF 93 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~ 93 (412)
||++|||+|++|..+|.. ..|.+|+|||+..-.|.+.+..|.|...+........ .. .+-.... .......++
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~~~ 78 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE-LDGVRWPDI 78 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC-CCcCCHHHH
Confidence 799999999999998876 4699999999865334355666666554332222111 00 0000000 011233444
Q ss_pred HHHHHHHHH-------------HcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCC
Q 037065 94 IAYIESYAS-------------HFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLD 159 (412)
Q Consensus 94 ~~~~~~~~~-------------~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~ 159 (412)
.++.+...+ +.+++++.+. ...+ + ..+|++.+ +++.||+||+||| ++|..|.++|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~----~~~V~v~~g~~~~~d~lViATG--s~p~~p~i~g~~ 149 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-ARFI--G----PKTLRTGDGEEITADQVVIAAG--SRPVIPPVIADS 149 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-EEEe--c----CCEEEECCCCEEEeCEEEEcCC--CCCCCCCCCCcC
Confidence 444332222 2344443332 2222 1 12355654 5799999999999 899999888864
Q ss_pred CCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchH
Q 037065 160 KFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLR 239 (412)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
.. .++..+........+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ ++++..+. +....
T Consensus 150 ~~---~~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~-----~~~~~-------- 212 (451)
T PRK07846 150 GV---RYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDD-----DISER-------- 212 (451)
T ss_pred Cc---cEEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCH-----HHHHH--------
Confidence 31 122222222223357899999999999999999999999999999988 55443322 11110
Q ss_pred HHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC--e--EEecCC
Q 037065 240 LVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN--G--ARFTDG 313 (412)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~--~--v~~~~g 313 (412)
+..+...+++++.+ |.+++.+ + +.+.+|
T Consensus 213 ----------------------------------------------l~~l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g 246 (451)
T PRK07846 213 ----------------------------------------------FTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDG 246 (451)
T ss_pred ----------------------------------------------HHHHHhcCeEEEeCCEEEEEEEcCCEEEEEECCC
Confidence 11112335777655 6676532 2 555688
Q ss_pred cEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHHHHHh
Q 037065 314 QEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQDISEQ 388 (412)
Q Consensus 314 ~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~i~~~ 388 (412)
+++++|.|++|+|++||.+.+ ++..++ ++++|++.+|. +++|+.|+|||+|||+.... .|..||+.+++||.+.
T Consensus 247 ~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~-~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 247 STVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE-YQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred cEeecCEEEEEECCccCccccCchhcCceECCCCcEeECC-CcccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 899999999999999998433 466788 67899999984 66799999999999996533 8899999999999753
No 41
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.98 E-value=5.6e-31 Score=255.07 Aligned_cols=301 Identities=19% Similarity=0.203 Sum_probs=191.2
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc-cCCCCCCCeeeecCCcccc-CCCCCCCC-C--CCCCCCHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL-WKHRTYDRLKLHLPKQFCE-LPLFGFPE-N--FPKYPTKR 91 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~--~~~~~~~~ 91 (412)
+|||+|||+||+|+++|..|++.|.+|+|||++..+||+ .+..|.|...+......+. ........ . ........
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 589999999999999999999999999999987778874 4555555544322222111 01000000 0 00011122
Q ss_pred HHHH-----------HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc---eEEEeCEEEEeeCCCCCCCCCCCCC
Q 037065 92 QFIA-----------YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD---SEYISKWLVVATGENAEPVFPDVVG 157 (412)
Q Consensus 92 ~~~~-----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~d~vIlAtG~~~~p~~p~~~g 157 (412)
++.+ -++...++.+++++.+. . ..... ..+.+...+ .++.||+|||||| ++|. .+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a---~~~~~-~~v~v~~~~g~~~~~~~d~lVIATG--s~p~--~ipg 153 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G---RLDGV-GKVVVKAEDGSETQLEAKDIVIATG--SEPT--PLPG 153 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E---EEccC-CEEEEEcCCCceEEEEeCEEEEeCC--CCCC--CCCC
Confidence 2221 12223333455554332 1 22221 345555444 3699999999999 6664 2455
Q ss_pred CCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcc
Q 037065 158 LDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFP 237 (412)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (412)
........++..+... ....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ +++|..+. +....
T Consensus 154 ~~~~~~~~~~~~~~~~-~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il~~~d~-----~~~~~------ 220 (466)
T PRK06115 154 VTIDNQRIIDSTGALS-LPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RICPGTDT-----ETAKT------ 220 (466)
T ss_pred CCCCCCeEECHHHHhC-CccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCCH-----HHHHH------
Confidence 4321112333322222 23357899999999999999999999999999999988 66654322 11111
Q ss_pred hHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeC--CeE--Eec
Q 037065 238 LRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITK--NGA--RFT 311 (412)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~--~~v--~~~ 311 (412)
..+.+++.+++++.+ |.++.. +++ .+.
T Consensus 221 -----------------------------------------------l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~ 253 (466)
T PRK06115 221 -----------------------------------------------LQKALTKQGMKFKLGSKVTGATAGADGVSLTLE 253 (466)
T ss_pred -----------------------------------------------HHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEE
Confidence 134455567888766 777753 233 222
Q ss_pred ---C--CcEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHH
Q 037065 312 ---D--GQEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKI 381 (412)
Q Consensus 312 ---~--g~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~ 381 (412)
+ ++++++|.|++|+|++||...+ ++..++ .+++|.+ ++ +.++|+.|+|||+|||+..+. .|..||+.+
T Consensus 254 ~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~-vd-~~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~a 331 (466)
T PRK06115 254 PAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGML-AN-DHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVAC 331 (466)
T ss_pred EcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEE-EC-CCeecCCCCEEEeeecCCCcccHHHHHHHHHHH
Confidence 2 3579999999999999998544 556677 5667754 45 367899999999999996544 889999999
Q ss_pred HHHHHHh
Q 037065 382 AQDISEQ 388 (412)
Q Consensus 382 a~~i~~~ 388 (412)
|++|.+.
T Consensus 332 a~~i~~~ 338 (466)
T PRK06115 332 IERIAGK 338 (466)
T ss_pred HHHHcCC
Confidence 9999753
No 42
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.98 E-value=4.1e-31 Score=254.42 Aligned_cols=272 Identities=18% Similarity=0.240 Sum_probs=188.2
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
..++|+|||+|++|+++|..|++.|++|+|+|+.+.+||.+.. .++.+ ....++.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~---------------gip~~---------~~~~~~~~ 187 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY---------------GIPEF---------RLPKEIVV 187 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeee---------------cCCCc---------cCCHHHHH
Confidence 3689999999999999999999999999999999888775432 11111 11134445
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCC---
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYK--- 172 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~--- 172 (412)
...+..++.+++++.+..+ +. .+.+.+....||+||+|||+ +.|..+.+||.+. .+ +++..++.
T Consensus 188 ~~~~~l~~~gv~~~~~~~v------~~----~v~~~~~~~~yd~viiAtGa-~~p~~~~ipG~~~-~g-v~~~~~~l~~~ 254 (449)
T TIGR01316 188 TEIKTLKKLGVTFRMNFLV------GK----TATLEELFSQYDAVFIGTGA-GLPKLMNIPGEEL-CG-VYSANDFLTRA 254 (449)
T ss_pred HHHHHHHhCCcEEEeCCcc------CC----cCCHHHHHhhCCEEEEeCCC-CCCCcCCCCCCCC-CC-cEEHHHHHHHH
Confidence 5555566778888877643 11 13333333479999999995 3688888888652 11 22211110
Q ss_pred -----------CCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHH
Q 037065 173 -----------SGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLV 241 (412)
Q Consensus 173 -----------~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (412)
......+++|+|||+|.+|+|+|..+.+.|.+|++++|++...++..
T Consensus 255 ~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~---------------------- 312 (449)
T TIGR01316 255 NLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTAR---------------------- 312 (449)
T ss_pred hhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC----------------------
Confidence 11124578999999999999999999999999999999872111110
Q ss_pred HHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeC--C----eEEec--
Q 037065 242 DKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITK--N----GARFT-- 311 (412)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~--~----~v~~~-- 311 (412)
....+.++..+|+++.. +.++.. + +|.+.
T Consensus 313 -----------------------------------------~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~ 351 (449)
T TIGR01316 313 -----------------------------------------VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKM 351 (449)
T ss_pred -----------------------------------------HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEE
Confidence 00123334445655543 444421 1 12221
Q ss_pred -------CC-----------cEecccEEEEcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc
Q 037065 312 -------DG-----------QEKEIDAIILATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ 372 (412)
Q Consensus 312 -------~g-----------~~~~~D~vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~ 372 (412)
+| .++++|.||+|+|+.|+. .+++..++ .+++|++.+| ..++|+.|+|||+||++.++.
T Consensus 352 ~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~-~~l~~~gl~~~~~G~i~vd-~~~~Ts~~~VfA~GD~~~g~~ 429 (449)
T TIGR01316 352 DCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNP-IMAETTRLKTSERGTIVVD-EDQRTSIPGVFAGGDIILGAA 429 (449)
T ss_pred EecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCc-hhhhccCcccCCCCeEEeC-CCCccCCCCEEEecCCCCCcH
Confidence 22 268999999999999997 67787788 6788999888 467899999999999996554
Q ss_pred ---cchhhHHHHHHHHHHhh
Q 037065 373 ---GTALDADKIAQDISEQW 389 (412)
Q Consensus 373 ---~a~~~~~~~a~~i~~~~ 389 (412)
.|+.+|+.+|.+|.++|
T Consensus 430 ~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 430 TVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 89999999999998764
No 43
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.98 E-value=7.3e-31 Score=253.22 Aligned_cols=294 Identities=20% Similarity=0.229 Sum_probs=193.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCC-CCcc-cCCCCCCCeeeecCCccccCCCCCCCCCCCCCC-CHHH-
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDC-LASL-WKHRTYDRLKLHLPKQFCELPLFGFPENFPKYP-TKRQ- 92 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 92 (412)
.|||+||||||+|+++|..|++.|.+|+|||+.+. +||+ .+..+.+...+..... ....+ .... ..+.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~----~~~~~----~~~~~~~~~~ 74 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAE----KNLSF----EQVMATKNTV 74 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhh----cCCCH----HHHHHHHHHH
Confidence 58999999999999999999999999999999864 5764 3443333222111100 00000 0000 0111
Q ss_pred ---HHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc--eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceee
Q 037065 93 ---FIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD--SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLH 167 (412)
Q Consensus 93 ---~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~--~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~ 167 (412)
+.....+...+.+++++.+. +..+ ++ ..+.+...+ .++.||+||+||| ++|..|.+||..+.. .++.
T Consensus 75 ~~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~--~~v~v~~~~~~~~~~~d~vViATG--s~~~~p~i~G~~~~~-~v~~ 146 (438)
T PRK07251 75 TSRLRGKNYAMLAGSGVDLYDAE-AHFV--SN--KVIEVQAGDEKIELTAETIVINTG--AVSNVLPIPGLADSK-HVYD 146 (438)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEE-EEEc--cC--CEEEEeeCCCcEEEEcCEEEEeCC--CCCCCCCCCCcCCCC-cEEc
Confidence 11112233444566655443 2222 12 333343322 5799999999999 788888888875432 2333
Q ss_pred ccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHH
Q 037065 168 TSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLL 247 (412)
Q Consensus 168 ~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (412)
..+. ......+++++|||+|.+|+|+|..+++.|.+|+++.+.+ ++++..+. +....
T Consensus 147 ~~~~-~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~~~~---------------- 203 (438)
T PRK07251 147 STGI-QSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS-TILPREEP-----SVAAL---------------- 203 (438)
T ss_pred hHHH-hcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-ccCCCCCH-----HHHHH----------------
Confidence 2222 2223457899999999999999999999999999999988 55554321 11111
Q ss_pred HHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC--eEE-ecCCcEecccEEE
Q 037065 248 MANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN--GAR-FTDGQEKEIDAII 322 (412)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~--~v~-~~~g~~~~~D~vi 322 (412)
..+.+++.+++++.+ |.+++.+ .+. ..+++++++|.++
T Consensus 204 -------------------------------------~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~vi 246 (438)
T PRK07251 204 -------------------------------------AKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALL 246 (438)
T ss_pred -------------------------------------HHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEE
Confidence 123445567888765 7777643 332 3467789999999
Q ss_pred EcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHHHHH
Q 037065 323 LATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQDISE 387 (412)
Q Consensus 323 ~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~i~~ 387 (412)
+|+|.+|+.+.+ ++..++ .+++|++.+| +.++|+.|+|||+|||+.... .|..+++.++.++.+
T Consensus 247 va~G~~p~~~~l~l~~~~~~~~~~g~i~vd-~~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~ 315 (438)
T PRK07251 247 YATGRKPNTEPLGLENTDIELTERGAIKVD-DYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTG 315 (438)
T ss_pred EeeCCCCCcccCCchhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 999999998543 455566 6778999888 467899999999999997644 777788888877764
No 44
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.98 E-value=6.2e-31 Score=255.82 Aligned_cols=300 Identities=16% Similarity=0.195 Sum_probs=198.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccC-CCCCCCeeeecCCcccc----CCCCCCCCCCCCCCCHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWK-HRTYDRLKLHLPKQFCE----LPLFGFPENFPKYPTKR 91 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 91 (412)
.|||+|||||++|+++|..|++.|.+|+|||+ +.+||.|. ..+++...+......+. ...+.+... ....+..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 78 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE-NVSVDWE 78 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC-CCcCCHH
Confidence 37999999999999999999999999999999 77888653 34554432221111111 001100000 0011222
Q ss_pred HHHHH-----------HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc--eEEEeCEEEEeeCCCCCCCCCCCC-C
Q 037065 92 QFIAY-----------IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD--SEYISKWLVVATGENAEPVFPDVV-G 157 (412)
Q Consensus 92 ~~~~~-----------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~--~~~~~d~vIlAtG~~~~p~~p~~~-g 157 (412)
.+.++ +.+..++.+++++.+. +..++ . ..+.+...+ .++.||+||+||| ++|..|+++ +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~--~--~~~~v~~~~g~~~~~~d~lVlAtG--~~p~~~~~~~~ 151 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGE-AKFLD--P--GTVLVTGENGEETLTAKNIIIATG--SRPRSLPGPFD 151 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc--C--CEEEEecCCCcEEEEeCEEEEcCC--CCCCCCCCCCC
Confidence 22222 2334445566665442 32222 2 445565544 5799999999999 788777665 2
Q ss_pred CCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcc
Q 037065 158 LDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFP 237 (412)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (412)
.. +..++..+........+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ +++|..+. +...
T Consensus 152 ~~---~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~~~------- 215 (461)
T TIGR01350 152 FD---GEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD-RILPGEDA-----EVSK------- 215 (461)
T ss_pred CC---CceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCCH-----HHHH-------
Confidence 22 12233332222223356899999999999999999999999999999988 55543221 1111
Q ss_pred hHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEe--CCeE--Eec
Q 037065 238 LRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEIT--KNGA--RFT 311 (412)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~--~~~v--~~~ 311 (412)
...+.+++.+++++.+ |.++. ++++ ...
T Consensus 216 ----------------------------------------------~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~ 249 (461)
T TIGR01350 216 ----------------------------------------------VVAKALKKKGVKILTNTKVTAVEKNDDQVVYENK 249 (461)
T ss_pred ----------------------------------------------HHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence 1134455567888766 77665 3344 334
Q ss_pred CC--cEecccEEEEcCCCCCCCCC-ccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHH
Q 037065 312 DG--QEKEIDAIILATGYKSNVPT-WLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQD 384 (412)
Q Consensus 312 ~g--~~~~~D~vi~atG~~p~~~~-~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~ 384 (412)
+| +++++|.+++|+|.+|+... +++..++ .+++|++.++ ++++++.|+||++|||+..+. .|..||+.+|++
T Consensus 250 ~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd-~~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~ 328 (461)
T TIGR01350 250 GGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVD-EYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAEN 328 (461)
T ss_pred CCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeC-CCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHH
Confidence 56 47999999999999999854 4677777 7788999988 567889999999999986533 889999999999
Q ss_pred HHHh
Q 037065 385 ISEQ 388 (412)
Q Consensus 385 i~~~ 388 (412)
|.+.
T Consensus 329 i~~~ 332 (461)
T TIGR01350 329 IAGK 332 (461)
T ss_pred HcCC
Confidence 9764
No 45
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.97 E-value=1.6e-30 Score=251.91 Aligned_cols=297 Identities=15% Similarity=0.164 Sum_probs=194.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC--------CCCcc-cCCCCCCCeeeecCCccccC----C--CCCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD--------CLASL-WKHRTYDRLKLHLPKQFCEL----P--LFGFP 81 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~--------~~g~~-~~~~~~~~~~~~~~~~~~~~----~--~~~~~ 81 (412)
.||++|||+|++|+.+|..+++.|.+|++||+.. .+||+ .+..|.|...+......... . ++.+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 5899999999999999999999999999999731 46774 45677776544332211110 0 11110
Q ss_pred CCCCCCCCHHHHHHHH-----------HHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc---eEEEeCEEEEeeCCC
Q 037065 82 ENFPKYPTKRQFIAYI-----------ESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD---SEYISKWLVVATGEN 147 (412)
Q Consensus 82 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~d~vIlAtG~~ 147 (412)
.. .......+.++. +...+..+++++.+. ..-++ + ..+.+...+ .++.||+||+|||
T Consensus 82 ~~--~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~-a~f~~--~--~~v~v~~~~g~~~~~~~d~lVIATG-- 152 (484)
T TIGR01438 82 ET--VKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAY-AEFVD--K--HRIKATNKKGKEKIYSAERFLIATG-- 152 (484)
T ss_pred CC--cccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEcC--C--CEEEEeccCCCceEEEeCEEEEecC--
Confidence 00 012222222222 223344456654332 22222 1 334443222 4799999999999
Q ss_pred CCCCCCCCCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhh
Q 037065 148 AEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFG 227 (412)
Q Consensus 148 ~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~ 227 (412)
++|..|++||..+. .+...+.. .....+++++|||+|.+|+|+|..+.+.|.+|+++.+ + .++|..+. +
T Consensus 153 s~p~~p~ipG~~~~---~~~~~~~~-~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~-~~l~~~d~-----~ 221 (484)
T TIGR01438 153 ERPRYPGIPGAKEL---CITSDDLF-SLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-S-ILLRGFDQ-----D 221 (484)
T ss_pred CCCCCCCCCCccce---eecHHHhh-cccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-c-ccccccCH-----H
Confidence 89999999887542 22222222 1223467899999999999999999999999999987 4 44444332 2
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeC
Q 037065 228 IAMALLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITK 305 (412)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~ 305 (412)
+.. ...+.+++.+++++.+ +.++..
T Consensus 222 ~~~-----------------------------------------------------~l~~~L~~~gV~i~~~~~v~~v~~ 248 (484)
T TIGR01438 222 CAN-----------------------------------------------------KVGEHMEEHGVKFKRQFVPIKVEQ 248 (484)
T ss_pred HHH-----------------------------------------------------HHHHHHHHcCCEEEeCceEEEEEE
Confidence 111 1234455668888776 455542
Q ss_pred --Ce--EEecCC---cEecccEEEEcCCCCCCCCCc-cccCcc-CCC-CCCCCCCCCCCCCCCCCeEEEeeecCc-c---
Q 037065 306 --NG--ARFTDG---QEKEIDAIILATGYKSNVPTW-LKECDF-FTK-DGMPKTPFPNGWKGENGLYTVGFTRRG-L--- 371 (412)
Q Consensus 306 --~~--v~~~~g---~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~-~G~~~~~~~~~~~~~~~iya~Gd~~~~-~--- 371 (412)
+. +.+.++ +++++|.|++|+|++||+..+ ++..++ .++ +|++.+| ++++|+.|+|||+|||+.. .
T Consensus 249 ~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd-~~~~Ts~p~IyA~GDv~~~~~~l~ 327 (484)
T TIGR01438 249 IEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPAD-EEEQTNVPYIYAVGDILEDKQELT 327 (484)
T ss_pred cCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecC-CCcccCCCCEEEEEEecCCCccch
Confidence 22 445555 379999999999999998543 567777 554 5889888 4678999999999999852 2
Q ss_pred ccchhhHHHHHHHHHH
Q 037065 372 QGTALDADKIAQDISE 387 (412)
Q Consensus 372 ~~a~~~~~~~a~~i~~ 387 (412)
..|..||+.+|++|..
T Consensus 328 ~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 328 PVAIQAGRLLAQRLFS 343 (484)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 2789999999999975
No 46
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=6.7e-31 Score=255.36 Aligned_cols=301 Identities=19% Similarity=0.219 Sum_probs=195.7
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEec------CCCCCccc-CCCCCCCeeeecCCccc-cC----C--CCCCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILER------SDCLASLW-KHRTYDRLKLHLPKQFC-EL----P--LFGFPE 82 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~------~~~~g~~~-~~~~~~~~~~~~~~~~~-~~----~--~~~~~~ 82 (412)
.||++|||||++|+++|..|++.|.+|+|||+ ...+||.| +..+.+...+....... .. . +....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~- 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD- 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC-
Confidence 68999999999999999999999999999998 35667755 33344432211110000 00 0 11100
Q ss_pred CCCCCCCHHHHH-----------HHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc---eEEEeCEEEEeeCCCC
Q 037065 83 NFPKYPTKRQFI-----------AYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD---SEYISKWLVVATGENA 148 (412)
Q Consensus 83 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~d~vIlAtG~~~ 148 (412)
. .......+. +.++...+..+++++.+ ++..++... ..++|.+.. .+++||+||+||| +
T Consensus 83 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~--~~~~v~v~~~~~~~~~~d~lViATG--s 155 (475)
T PRK06327 83 G--VKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTD--AGYEIKVTGEDETVITAKHVIIATG--S 155 (475)
T ss_pred C--CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCC--CCCEEEEecCCCeEEEeCEEEEeCC--C
Confidence 0 001112222 22334445557776644 355555433 345565532 4799999999999 7
Q ss_pred CCCCCCCCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhH
Q 037065 149 EPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGI 228 (412)
Q Consensus 149 ~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~ 228 (412)
+|..++ +.. ..+..++.++........+++++|||+|.+|+|+|..+.+.|.+|+++.+++ ++++..+. ++
T Consensus 156 ~p~~~p--~~~-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~~ 226 (475)
T PRK06327 156 EPRHLP--GVP-FDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AFLAAADE-----QV 226 (475)
T ss_pred CCCCCC--CCC-CCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-ccCCcCCH-----HH
Confidence 775432 221 1122233333222223457899999999999999999999999999999988 55544321 11
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC
Q 037065 229 AMALLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN 306 (412)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~ 306 (412)
.. ...+.+++.+++++.+ |.++..+
T Consensus 227 ~~-----------------------------------------------------~~~~~l~~~gi~i~~~~~v~~i~~~ 253 (475)
T PRK06327 227 AK-----------------------------------------------------EAAKAFTKQGLDIHLGVKIGEIKTG 253 (475)
T ss_pred HH-----------------------------------------------------HHHHHHHHcCcEEEeCcEEEEEEEc
Confidence 11 1134445567888866 7777533
Q ss_pred --e--EEecC--C--cEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---c
Q 037065 307 --G--ARFTD--G--QEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---G 373 (412)
Q Consensus 307 --~--v~~~~--g--~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~ 373 (412)
+ +.+.+ | +++++|.|++|+|++|+.+.+ ++..++ .+++|++.+|. .++|+.|+|||+|||+..+. .
T Consensus 254 ~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~-~~~Ts~~~VyA~GD~~~~~~~~~~ 332 (475)
T PRK06327 254 GKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDD-HCRTNVPNVYAIGDVVRGPMLAHK 332 (475)
T ss_pred CCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECC-CCccCCCCEEEEEeccCCcchHHH
Confidence 3 34344 3 468999999999999998543 456677 77889999884 56899999999999986543 7
Q ss_pred chhhHHHHHHHHHHh
Q 037065 374 TALDADKIAQDISEQ 388 (412)
Q Consensus 374 a~~~~~~~a~~i~~~ 388 (412)
|..||+.+|.+|.+.
T Consensus 333 A~~~G~~aa~~i~g~ 347 (475)
T PRK06327 333 AEEEGVAVAERIAGQ 347 (475)
T ss_pred HHHHHHHHHHHHcCC
Confidence 899999999999753
No 47
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.97 E-value=2.8e-31 Score=252.66 Aligned_cols=282 Identities=15% Similarity=0.166 Sum_probs=190.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCC--CeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGL--PSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFI 94 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~--~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
.++|+|||||++|+++|..|++.+. +|+|+++.+..+ |....+ ++.+..... ... .....
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~~l--~~~~~~~~~---~~~--~~~~~---- 64 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERPPL--SKSMLLEDS---PQL--QQVLP---- 64 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCCCC--CHHHHCCCC---ccc--cccCC----
Confidence 4689999999999999999999876 799999987543 111100 000000000 000 00000
Q ss_pred HHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCC
Q 037065 95 AYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKS 173 (412)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~ 173 (412)
.++..+.+++++.++.|+.++.... .+.+.+ .++.||+||+||| ++|..+++++... ..++......+
T Consensus 65 ---~~~~~~~~i~~~~g~~V~~id~~~~----~v~~~~g~~~~yd~LViATG--s~~~~~p~~~~~~--~~v~~~~~~~d 133 (396)
T PRK09754 65 ---ANWWQENNVHLHSGVTIKTLGRDTR----ELVLTNGESWHWDQLFIATG--AAARPLPLLDALG--ERCFTLRHAGD 133 (396)
T ss_pred ---HHHHHHCCCEEEcCCEEEEEECCCC----EEEECCCCEEEcCEEEEccC--CCCCCCCCCCcCC--CCEEecCCHHH
Confidence 1223456899998989999987552 255554 6899999999999 7776665444321 12222211111
Q ss_pred -----CCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHH
Q 037065 174 -----GSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLM 248 (412)
Q Consensus 174 -----~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (412)
.....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++++... +.
T Consensus 134 a~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~----------------~~--------- 187 (396)
T PRK09754 134 AARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA-TVMGRNAP----------------PP--------- 187 (396)
T ss_pred HHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-cchhhhcC----------------HH---------
Confidence 111247899999999999999999999999999999988 44433211 00
Q ss_pred HHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC---eEEecCCcEecccEEEE
Q 037065 249 ANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN---GARFTDGQEKEIDAIIL 323 (412)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~---~v~~~~g~~~~~D~vi~ 323 (412)
......+.+++.+++++.+ |.++..+ .+.+.+|+++++|.|++
T Consensus 188 --------------------------------~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~ 235 (396)
T PRK09754 188 --------------------------------VQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIY 235 (396)
T ss_pred --------------------------------HHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEE
Confidence 1111234455667888765 7777643 25678899999999999
Q ss_pred cCCCCCCCCCccccCccCCCCCCCCCCCCCCCCCCCCeEEEeeecCcc------------ccchhhHHHHHHHHHHh
Q 037065 324 ATGYKSNVPTWLKECDFFTKDGMPKTPFPNGWKGENGLYTVGFTRRGL------------QGTALDADKIAQDISEQ 388 (412)
Q Consensus 324 atG~~p~~~~~l~~~~~~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~------------~~a~~~~~~~a~~i~~~ 388 (412)
++|.+||. .+++..++..+ |.+.+| ++++|+.|+|||+|||+... ..|..||+.+|+||.+.
T Consensus 236 a~G~~pn~-~l~~~~gl~~~-~gi~vd-~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~ 309 (396)
T PRK09754 236 GIGISAND-QLAREANLDTA-NGIVID-EACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGL 309 (396)
T ss_pred CCCCChhh-HHHHhcCCCcC-CCEEEC-CCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCC
Confidence 99999997 57777777443 457777 46788999999999998421 26889999999999864
No 48
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=8.4e-31 Score=254.86 Aligned_cols=305 Identities=19% Similarity=0.217 Sum_probs=197.9
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCccc-CCCCCCCeeeecCCccccC------CCCCCCCCCCCCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLW-KHRTYDRLKLHLPKQFCEL------PLFGFPENFPKYP 88 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 88 (412)
..|||+||||||+|+++|..|++.|.+|+|||+. .+||++ +..|.+...+......+.. .+.........+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 3689999999999999999999999999999996 677765 4445554332221111110 0111000000000
Q ss_pred ----CHHHHHHH----HHHHHHHcCCcccccceEEEEEEc---CCCCcEEEEEcc---eEEEeCEEEEeeCCCCCCCCCC
Q 037065 89 ----TKRQFIAY----IESYASHFKIQPKFKQAVQTALFD---HASGFWRVQTQD---SEYISKWLVVATGENAEPVFPD 154 (412)
Q Consensus 89 ----~~~~~~~~----~~~~~~~~~~~~~~~~~v~~i~~~---~~~~~~~v~~~~---~~~~~d~vIlAtG~~~~p~~p~ 154 (412)
..+.+.+. ..+..++.+++++.+ +++.++.. +..+.+++.+.+ .++.||+||+||| ++|..+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATG--s~p~~~- 157 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATG--SRPVEL- 157 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCC--CCCCCC-
Confidence 11222222 234455668887765 46666543 111356666544 4799999999999 677543
Q ss_pred CCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHH
Q 037065 155 VVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLR 234 (412)
Q Consensus 155 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 234 (412)
|+.......+++..+... ....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ +++|..+. ++...
T Consensus 158 -p~~~~~~~~~~~~~~~~~-~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-~il~~~~~-----~~~~~--- 226 (472)
T PRK05976 158 -PGLPFDGEYVISSDEALS-LETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-RILPTEDA-----ELSKE--- 226 (472)
T ss_pred -CCCCCCCceEEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccCCcCCH-----HHHHH---
Confidence 222211111333332222 22346899999999999999999999999999999988 56655322 11111
Q ss_pred hcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEe---CCeE-
Q 037065 235 WFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEIT---KNGA- 308 (412)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~---~~~v- 308 (412)
..+.+++.+++++.+ |.++. .+++
T Consensus 227 --------------------------------------------------l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~ 256 (472)
T PRK05976 227 --------------------------------------------------VARLLKKLGVRVVTGAKVLGLTLKKDGGVL 256 (472)
T ss_pred --------------------------------------------------HHHHHHhcCCEEEeCcEEEEEEEecCCCEE
Confidence 134455668888876 77775 3332
Q ss_pred --EecCCc--EecccEEEEcCCCCCCCCCc-cccCccCCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHH
Q 037065 309 --RFTDGQ--EKEIDAIILATGYKSNVPTW-LKECDFFTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADK 380 (412)
Q Consensus 309 --~~~~g~--~~~~D~vi~atG~~p~~~~~-l~~~~~~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~ 380 (412)
...+|+ ++++|.|++|+|.+|+.+.+ ++..++..++|++.++ +.++++.|+|||+|||+..+. .|..+|+.
T Consensus 257 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd-~~l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~ 335 (472)
T PRK05976 257 IVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQID-DFCQTKERHIYAIGDVIGEPQLAHVAMAEGEM 335 (472)
T ss_pred EEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEEC-CCcccCCCCEEEeeecCCCcccHHHHHHHHHH
Confidence 234663 68999999999999998544 4555664457888888 466789999999999986533 88999999
Q ss_pred HHHHHHH
Q 037065 381 IAQDISE 387 (412)
Q Consensus 381 ~a~~i~~ 387 (412)
++.+|.+
T Consensus 336 aa~~i~g 342 (472)
T PRK05976 336 AAEHIAG 342 (472)
T ss_pred HHHHHcC
Confidence 9999864
No 49
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.97 E-value=6.2e-31 Score=254.58 Aligned_cols=276 Identities=18% Similarity=0.201 Sum_probs=192.1
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
..++|+|||||++|+++|..|++.|++|+|+|+.+.+||.+... ++. +....++..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------ip~---------~~~~~~~~~ 194 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------IPE---------FRLPKDIVD 194 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------CCC---------ccCCHHHHH
Confidence 46799999999999999999999999999999998887754321 111 112245566
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCC--
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKS-- 173 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~-- 173 (412)
+..+..++.+++++.++.+.. . +...+..+.||+||+|||+ ..+..+.++|.+. . .+++..++..
T Consensus 195 ~~~~~l~~~gv~~~~~~~v~~--------~--v~~~~~~~~~d~vvlAtGa-~~~~~~~i~G~~~-~-gv~~~~~~l~~~ 261 (457)
T PRK11749 195 REVERLLKLGVEIRTNTEVGR--------D--ITLDELRAGYDAVFIGTGA-GLPRFLGIPGENL-G-GVYSAVDFLTRV 261 (457)
T ss_pred HHHHHHHHcCCEEEeCCEECC--------c--cCHHHHHhhCCEEEEccCC-CCCCCCCCCCccC-C-CcEEHHHHHHHH
Confidence 666667778888887766511 0 2222333689999999995 2466667777643 1 1222211111
Q ss_pred ------CCCCCCCeEEEEcCCCCHHHHHHHHhhcCC-ccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHH
Q 037065 174 ------GSEFKNQKVLVIGCGNSGMEVSLDLCRHNA-IPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILL 246 (412)
Q Consensus 174 ------~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (412)
.....+++|+|||+|.+|+|+|..+.+.|. +|+++.+++...++....
T Consensus 262 ~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~------------------------- 316 (457)
T PRK11749 262 NQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE------------------------- 316 (457)
T ss_pred hhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-------------------------
Confidence 112368899999999999999999999987 899999977322222110
Q ss_pred HHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCCe-----EEec--------
Q 037065 247 LMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKNG-----ARFT-------- 311 (412)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~~-----v~~~-------- 311 (412)
..+.++..+|+++.+ +.++..++ |.+.
T Consensus 317 --------------------------------------~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~ 358 (457)
T PRK11749 317 --------------------------------------EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPD 358 (457)
T ss_pred --------------------------------------HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcC
Confidence 012333445665544 44543221 3321
Q ss_pred -----------CCcEecccEEEEcCCCCCCCCCccc-cCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCcc---ccch
Q 037065 312 -----------DGQEKEIDAIILATGYKSNVPTWLK-ECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGL---QGTA 375 (412)
Q Consensus 312 -----------~g~~~~~D~vi~atG~~p~~~~~l~-~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~---~~a~ 375 (412)
++.++++|.||+|+|++|+. .++. ..++ +++.|++.++..+++|+.|+|||+||++... ..|+
T Consensus 359 ~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~-~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~ 437 (457)
T PRK11749 359 ASGRRRVPIEGSEFTLPADLVIKAIGQTPNP-LILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAV 437 (457)
T ss_pred CCCCcccCCCCceEEEECCEEEECccCCCCc-hhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHH
Confidence 23479999999999999996 4544 4566 7788999988657889999999999999653 3899
Q ss_pred hhHHHHHHHHHHhhccc
Q 037065 376 LDADKIAQDISEQWRKI 392 (412)
Q Consensus 376 ~~~~~~a~~i~~~~~~~ 392 (412)
.+|+.+|.+|...+.+.
T Consensus 438 ~~G~~aA~~I~~~l~g~ 454 (457)
T PRK11749 438 GDGKDAAEAIHEYLEGA 454 (457)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998764
No 50
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.97 E-value=3e-30 Score=260.80 Aligned_cols=289 Identities=20% Similarity=0.265 Sum_probs=184.8
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
..++|+||||||||+++|..|+++|++|+|+|+.+.+||.+... ++.+. .. .++..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~---------------IP~~R--------lp-~evL~ 593 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI---------------IPQFR--------IP-AELIQ 593 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee---------------ccccc--------cc-HHHHH
Confidence 36799999999999999999999999999999999888765321 11111 11 23344
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCC--
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKS-- 173 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~-- 173 (412)
+..+...+.++++++++.+ .+..+. + ....||+||||||++ .+..+.++|... .+++..++..
T Consensus 594 ~die~l~~~GVe~~~gt~V-di~le~------L----~~~gYDaVILATGA~-~~~~l~IpG~~~---gV~saldfL~~~ 658 (1019)
T PRK09853 594 HDIEFVKAHGVKFEFGCSP-DLTVEQ------L----KNEGYDYVVVAIGAD-KNGGLKLEGGNQ---NVIKALPFLEEY 658 (1019)
T ss_pred HHHHHHHHcCCEEEeCcee-EEEhhh------h----eeccCCEEEECcCCC-CCCCCCCCCccC---CceehHHHHHHH
Confidence 4445566679999888766 232211 0 234699999999952 344456666542 1222222211
Q ss_pred ----CCCCCCCeEEEEcCCCCHHHHHHHHhhc-C-CccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHH
Q 037065 174 ----GSEFKNQKVLVIGCGNSGMEVSLDLCRH-N-AIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLL 247 (412)
Q Consensus 174 ----~~~~~~~~v~vvG~G~~~~e~a~~l~~~-g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (412)
.....+++|+|||+|.+|+|+|..+.+. | .+|++++|++...+|.... + +....
T Consensus 659 k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~e-----E-------------le~Al-- 718 (1019)
T PRK09853 659 KNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWRE-----E-------------YEEAL-- 718 (1019)
T ss_pred hhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHH-----H-------------HHHHH--
Confidence 1224589999999999999999998887 4 4899999987444443211 0 00000
Q ss_pred HHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhc-cCCEEEEcC-ceEEeCCe----EEecCCcEecccEE
Q 037065 248 MANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIK-SGKIKVVGG-VKEITKNG----ARFTDGQEKEIDAI 321 (412)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~-v~~i~~~~----v~~~~g~~~~~D~v 321 (412)
..|+..-.. .....+. .+.+.+..- +.+.+..+ +...++.++++|.|
T Consensus 719 ----------eeGVe~~~~-----------------~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~V 771 (1019)
T PRK09853 719 ----------EDGVEFKEL-----------------LNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTV 771 (1019)
T ss_pred ----------HcCCEEEeC-----------------CceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEE
Confidence 011110000 0000010 111111100 01111111 22234568999999
Q ss_pred EEcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHHHHHhhccc
Q 037065 322 ILATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQDISEQWRKI 392 (412)
Q Consensus 322 i~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~i~~~~~~~ 392 (412)
|+|+|.+|+. .+++..++ .++.|++.++ .+++|+.|+|||+||++.++. .|+.+|+.+|.+|.+.....
T Consensus 772 IvAIG~~Pnt-elle~~GL~ld~~G~I~VD-etlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~~~ 844 (1019)
T PRK09853 772 ITAIGEQVDT-ELLKANGIPLDKKGWPVVD-ANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREGIR 844 (1019)
T ss_pred EECCCCcCCh-hHHHhcCccccCCCCEEeC-CCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999998 67788888 7888999887 567899999999999986543 89999999999999876543
No 51
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.97 E-value=1.1e-30 Score=266.28 Aligned_cols=279 Identities=17% Similarity=0.167 Sum_probs=198.3
Q ss_pred eEEECCChHHHHHHHHHHHc---CCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 20 PIIVGAGPSGLAVSACLSQQ---GLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 20 vvIIG~G~aGl~~A~~l~~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
|+|||+|++|+++|..|++. +++|+|||+.+.++ |..+.+. ....+....+++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L~--------------~~l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILLS--------------SVLQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------ccccccc--------------HHHCCCCCHHHccCC
Confidence 69999999999999999885 46999999988654 2221110 011111223333333
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCC--
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKS-- 173 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~-- 173 (412)
..++.++.+++++.+++|+.|+...+ .|.+.+ .++.||+||+||| +.|..|++||.+.. .++......+
T Consensus 60 ~~~~~~~~gv~~~~g~~V~~Id~~~k----~V~~~~g~~~~yD~LVlATG--s~p~~p~ipG~~~~--~v~~~rt~~d~~ 131 (785)
T TIGR02374 60 SKDWYEKHGITLYTGETVIQIDTDQK----QVITDAGRTLSYDKLILATG--SYPFILPIPGADKK--GVYVFRTIEDLD 131 (785)
T ss_pred CHHHHHHCCCEEEcCCeEEEEECCCC----EEEECCCcEeeCCEEEECCC--CCcCCCCCCCCCCC--CEEEeCCHHHHH
Confidence 34455667999999999999987542 366665 6799999999999 88999999987642 1222221111
Q ss_pred ---CCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHHH
Q 037065 174 ---GSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMAN 250 (412)
Q Consensus 174 ---~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (412)
......++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++++... ..
T Consensus 132 ~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~-~ll~~~ld----------------~~----------- 183 (785)
T TIGR02374 132 AIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP-GLMAKQLD----------------QT----------- 183 (785)
T ss_pred HHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC-chhhhhcC----------------HH-----------
Confidence 011246899999999999999999999999999999888 44443211 00
Q ss_pred HhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC----eEEecCCcEecccEEEEc
Q 037065 251 ITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN----GARFTDGQEKEIDAIILA 324 (412)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~----~v~~~~g~~~~~D~vi~a 324 (412)
......+.+++.+|+++.+ +.++..+ .+.+.||+++++|+||++
T Consensus 184 ------------------------------~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a 233 (785)
T TIGR02374 184 ------------------------------AGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMA 233 (785)
T ss_pred ------------------------------HHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEEC
Confidence 0111134455668888876 6777543 477889999999999999
Q ss_pred CCCCCCCCCccccCccCCCCCCCCCCCCCCCCCCCCeEEEeeecCc-------cccchhhHHHHHHHHHHh
Q 037065 325 TGYKSNVPTWLKECDFFTKDGMPKTPFPNGWKGENGLYTVGFTRRG-------LQGTALDADKIAQDISEQ 388 (412)
Q Consensus 325 tG~~p~~~~~l~~~~~~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~-------~~~a~~~~~~~a~~i~~~ 388 (412)
+|++||. .+++..++... |.+.+| ++++|+.|+|||+|||+.. ...|..||+.+|.||.+.
T Consensus 234 ~G~~Pn~-~la~~~gl~~~-ggI~Vd-~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~ 301 (785)
T TIGR02374 234 AGIRPND-ELAVSAGIKVN-RGIIVN-DSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGV 301 (785)
T ss_pred CCCCcCc-HHHHhcCCccC-CCEEEC-CCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCC
Confidence 9999998 57777777333 556677 4678999999999999842 225789999999999764
No 52
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.97 E-value=1.6e-30 Score=245.51 Aligned_cols=283 Identities=17% Similarity=0.198 Sum_probs=198.8
Q ss_pred CeEEECCChHHHHHHHHHHHc---CCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 19 GPIIVGAGPSGLAVSACLSQQ---GLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
+|+|||||++|+.+|.+|+++ +.+|+|||+++... |... ++....+.....++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~---------------~~~~~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGM---------------LPGMIAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccch---------------hhHHHheeCCHHHhcc
Confidence 589999999999999999754 57999999987421 1100 0001111223445555
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeec---cC-
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHT---SK- 170 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~---~~- 170 (412)
.+++++++++++++.+ +|++++.+++ +|.+.+ +++.||+||+||| +.+..|.+||..+........ ..
T Consensus 59 ~~~~~~~~~gv~~~~~-~v~~id~~~~----~V~~~~g~~~~yD~LviAtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~ 131 (364)
T TIGR03169 59 DLRRLARQAGARFVIA-EATGIDPDRR----KVLLANRPPLSYDVLSLDVG--STTPLSGVEGAADLAVPVKPIENFLAR 131 (364)
T ss_pred cHHHHHHhcCCEEEEE-EEEEEecccC----EEEECCCCcccccEEEEccC--CCCCCCCCCcccccccccCCHHHHHHH
Confidence 6667777789998754 7999998663 266666 6799999999999 888888888854311000000 00
Q ss_pred ---CC--CCCCCCCCeEEEEcCCCCHHHHHHHHhhc----C--CccEEEEeCCCccccccccCCChhhHHHHHHHhcchH
Q 037065 171 ---YK--SGSEFKNQKVLVIGCGNSGMEVSLDLCRH----N--AIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLR 239 (412)
Q Consensus 171 ---~~--~~~~~~~~~v~vvG~G~~~~e~a~~l~~~----g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
.. .......++++|||+|.+|+|+|..|.+. + .+|+++ +.+ .+++.... +..
T Consensus 132 ~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~-~~l~~~~~-----~~~---------- 194 (364)
T TIGR03169 132 WEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA-SLLPGFPA-----KVR---------- 194 (364)
T ss_pred HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC-cccccCCH-----HHH----------
Confidence 00 00112357999999999999999999853 3 478888 444 33332111 111
Q ss_pred HHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCCeEEecCCcEec
Q 037065 240 LVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKNGARFTDGQEKE 317 (412)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~~v~~~~g~~~~ 317 (412)
....+.+++.+|+++.+ |.+++.+.+.+.+|++++
T Consensus 195 -------------------------------------------~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~~i~ 231 (364)
T TIGR03169 195 -------------------------------------------RLVLRLLARRGIEVHEGAPVTRGPDGALILADGRTLP 231 (364)
T ss_pred -------------------------------------------HHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCCEEe
Confidence 11234556678898876 888887788889999999
Q ss_pred ccEEEEcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCCC-CCCCeEEEeeecCc--------cccchhhHHHHHHHHHH
Q 037065 318 IDAIILATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWK-GENGLYTVGFTRRG--------LQGTALDADKIAQDISE 387 (412)
Q Consensus 318 ~D~vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~-~~~~iya~Gd~~~~--------~~~a~~~~~~~a~~i~~ 387 (412)
+|.+++|+|.+|+. ++...++ .++.|++.+|. ++++ +.|+|||+|||+.. ...|+.||+.+|+||..
T Consensus 232 ~D~vi~a~G~~p~~--~l~~~gl~~~~~g~i~vd~-~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 232 ADAILWATGARAPP--WLAESGLPLDEDGFLRVDP-TLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred cCEEEEccCCChhh--HHHHcCCCcCCCCeEEECC-ccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHH
Confidence 99999999999983 5666676 67789999985 4454 99999999999842 12689999999999999
Q ss_pred hhcccc
Q 037065 388 QWRKIK 393 (412)
Q Consensus 388 ~~~~~~ 393 (412)
.+.+..
T Consensus 309 ~l~g~~ 314 (364)
T TIGR03169 309 SLRGQP 314 (364)
T ss_pred HhcCCC
Confidence 987754
No 53
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.97 E-value=4.6e-30 Score=253.54 Aligned_cols=307 Identities=17% Similarity=0.198 Sum_probs=192.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecC-CCCCc-ccCCCCCCCeeeecCCcccc-CC------CCC-----CC-
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERS-DCLAS-LWKHRTYDRLKLHLPKQFCE-LP------LFG-----FP- 81 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~-~~~g~-~~~~~~~~~~~~~~~~~~~~-~~------~~~-----~~- 81 (412)
.|||+|||+|++|..+|..+++.|.+|+|||+. ..+|| +.+..|.|...+......+. .. .+- |+
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 689999999999999999999999999999974 35676 44555655544322211111 00 000 00
Q ss_pred ---------CC--CCCCCCHHHHHHHHHHHHHHcC--Cccc-------ccceEEEEEEcC----CCCcEEEEEcceEEEe
Q 037065 82 ---------EN--FPKYPTKRQFIAYIESYASHFK--IQPK-------FKQAVQTALFDH----ASGFWRVQTQDSEYIS 137 (412)
Q Consensus 82 ---------~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~v~~i~~~~----~~~~~~v~~~~~~~~~ 137 (412)
+. .........+.++.+....+.. +.-. ...+...+.... +....++..++.++.|
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i~a 275 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKV 275 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEEEC
Confidence 00 0111344455555544333321 1100 111122222211 0012222223367999
Q ss_pred CEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCcccc
Q 037065 138 KWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLP 217 (412)
Q Consensus 138 d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~ 217 (412)
|+|||||| ++|..|.+++... ..++.. +........+++++|||+|.+|+|+|..+...|.+|+++++.+ +++|
T Consensus 276 d~lIIATG--S~P~~P~~~~~~~--~~V~ts-~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~-~ll~ 349 (659)
T PTZ00153 276 KNIIIATG--STPNIPDNIEVDQ--KSVFTS-DTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP-QLLP 349 (659)
T ss_pred CEEEEcCC--CCCCCCCCCCCCC--CcEEeh-HHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccC-cccc
Confidence 99999999 8888886555432 123333 2222233457899999999999999999999999999999998 6665
Q ss_pred ccccCCChhhHHHHHHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhh-hccCCEEE
Q 037065 218 REIFGFSTFGIAMALLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQ-IKSGKIKV 296 (412)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v 296 (412)
..+. +....+ .+. +++.+|++
T Consensus 350 ~~d~-----eis~~l-----------------------------------------------------~~~ll~~~GV~I 371 (659)
T PTZ00153 350 LLDA-----DVAKYF-----------------------------------------------------ERVFLKSKPVRV 371 (659)
T ss_pred cCCH-----HHHHHH-----------------------------------------------------HHHHhhcCCcEE
Confidence 4322 222211 122 23457888
Q ss_pred EcC--ceEEeCCe----EEe--cC-------C--------cEecccEEEEcCCCCCCCCCc-cccCccCCCCCCCCCCCC
Q 037065 297 VGG--VKEITKNG----ARF--TD-------G--------QEKEIDAIILATGYKSNVPTW-LKECDFFTKDGMPKTPFP 352 (412)
Q Consensus 297 ~~~--v~~i~~~~----v~~--~~-------g--------~~~~~D~vi~atG~~p~~~~~-l~~~~~~~~~G~~~~~~~ 352 (412)
+.+ |.++..+. +.+ .+ + +++++|.|++|+|++||+..+ ++..++..++|++.+|.
T Consensus 372 ~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe- 450 (659)
T PTZ00153 372 HLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDE- 450 (659)
T ss_pred EcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECC-
Confidence 776 66665321 332 11 1 279999999999999998544 56777743459999884
Q ss_pred CCCCC------CCCeEEEeeecCccc---cchhhHHHHHHHHHHh
Q 037065 353 NGWKG------ENGLYTVGFTRRGLQ---GTALDADKIAQDISEQ 388 (412)
Q Consensus 353 ~~~~~------~~~iya~Gd~~~~~~---~a~~~~~~~a~~i~~~ 388 (412)
+++++ +|+|||+|||+..+. .|..||+.++++|.+.
T Consensus 451 ~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 451 HLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred CCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 56665 699999999996544 8899999999999763
No 54
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=3.4e-30 Score=249.48 Aligned_cols=297 Identities=18% Similarity=0.216 Sum_probs=192.1
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCcccc------CCCCCCCCCCCCCCCHHH
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCE------LPLFGFPENFPKYPTKRQ 92 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 92 (412)
+|+|||||++|+++|..|++.|.+|+|||+....|.+.+..|.+...+......+. .-+..+... ........
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNG-SISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCC-CCccCHHH
Confidence 79999999999999999999999999999976444455566665443321111100 001111100 00122233
Q ss_pred HHHHHH-----------HHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc--eEEEeCEEEEeeCCCCCCCCCCCCCCC
Q 037065 93 FIAYIE-----------SYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD--SEYISKWLVVATGENAEPVFPDVVGLD 159 (412)
Q Consensus 93 ~~~~~~-----------~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~--~~~~~d~vIlAtG~~~~p~~p~~~g~~ 159 (412)
+..+.+ ...++.++++..+ ++..++ + ..+.+..++ .++.||+||+||| ++|..|++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~--~--~~v~v~~~~~~~~~~~d~lviATG--s~p~~~p~~~~~ 153 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFET--D--HRVRVEYGDKEEVVDAEQFIIAAG--SEPTELPFAPFD 153 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcc--C--CEEEEeeCCCcEEEECCEEEEeCC--CCCCCCCCCCCC
Confidence 333322 2233335554433 232232 1 444555444 4799999999999 778766665543
Q ss_pred CCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchH
Q 037065 160 KFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLR 239 (412)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
. ..+++.. ........+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ ++++..+. ++...
T Consensus 154 ~--~~v~~~~-~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll~~~d~-----e~~~~-------- 216 (458)
T PRK06912 154 G--KWIINSK-HAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLLPGEDE-----DIAHI-------- 216 (458)
T ss_pred C--CeEEcch-HHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCccccH-----HHHHH--------
Confidence 2 1233332 222233447899999999999999999999999999999988 55554322 11111
Q ss_pred HHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC--eEEec-CC-
Q 037065 240 LVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN--GARFT-DG- 313 (412)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~--~v~~~-~g- 313 (412)
..+.+++.+++++.+ |.+++.+ .+.+. +|
T Consensus 217 ---------------------------------------------l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~ 251 (458)
T PRK06912 217 ---------------------------------------------LREKLENDGVKIFTGAALKGLNSYKKQALFEYEGS 251 (458)
T ss_pred ---------------------------------------------HHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCc
Confidence 134455567888876 7777643 24443 44
Q ss_pred -cEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHHHHH
Q 037065 314 -QEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQDISE 387 (412)
Q Consensus 314 -~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~i~~ 387 (412)
.++++|.|++|+|.+||.+.+ ++..++ .+++| +.+| .+++|+.|+|||+|||+..+. .|..||+.+|.+|.+
T Consensus 252 ~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd-~~~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g 329 (458)
T PRK06912 252 IQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVN-EHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASG 329 (458)
T ss_pred eEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeC-CCeecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcC
Confidence 368999999999999998543 566677 55666 7777 467799999999999996543 889999999999864
No 55
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.97 E-value=8.9e-30 Score=245.56 Aligned_cols=295 Identities=15% Similarity=0.170 Sum_probs=187.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc-ccCCCCCCCeeeecCCcccc-C---CCCCCCCCCCCCCCHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS-LWKHRTYDRLKLHLPKQFCE-L---PLFGFPENFPKYPTKR 91 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~-~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 91 (412)
.||++|||+|++|..+|.. ..|.+|++||+.. +|| +.+..|.|...+........ . ..+-+... ...+...
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE-IDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC-CCccCHH
Confidence 5899999999999998654 4699999999854 555 55666666654432221111 0 01111000 0012233
Q ss_pred HHHHHHHH-HH--------------HHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCC
Q 037065 92 QFIAYIES-YA--------------SHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDV 155 (412)
Q Consensus 92 ~~~~~~~~-~~--------------~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~ 155 (412)
.+.++... .. ++.+++++.+..+.. +.++|.+.+ .++.||+||+||| ++|..|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~-------~~~~V~~~~g~~~~~d~lIiATG--s~p~~p~~ 148 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV-------GPRTLRTGDGEEITGDQIVIAAG--SRPYIPPA 148 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe-------cCCEEEECCCcEEEeCEEEEEEC--CCCCCCCC
Confidence 33333221 11 113455444432211 223466644 6799999999999 88887754
Q ss_pred CCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHh
Q 037065 156 VGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRW 235 (412)
Q Consensus 156 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (412)
.+... .......+.. .....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ ++++..+. +....+
T Consensus 149 ~~~~~--~~~~~~~~~~-~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~-----~~~~~l--- 216 (452)
T TIGR03452 149 IADSG--VRYHTNEDIM-RLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHLDE-----DISDRF--- 216 (452)
T ss_pred CCCCC--CEEEcHHHHH-hhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC-ccccccCH-----HHHHHH---
Confidence 32211 1122222211 122347899999999999999999999999999999988 44443221 111100
Q ss_pred cchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeC--Ce--EE
Q 037065 236 FPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITK--NG--AR 309 (412)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~--~~--v~ 309 (412)
.+ +...+++++.+ |.++.. ++ +.
T Consensus 217 --------------------------------------------------~~-~~~~gI~i~~~~~V~~i~~~~~~v~v~ 245 (452)
T TIGR03452 217 --------------------------------------------------TE-IAKKKWDIRLGRNVTAVEQDGDGVTLT 245 (452)
T ss_pred --------------------------------------------------HH-HHhcCCEEEeCCEEEEEEEcCCeEEEE
Confidence 11 11235666655 666652 23 45
Q ss_pred ecCCcEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHH
Q 037065 310 FTDGQEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQD 384 (412)
Q Consensus 310 ~~~g~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~ 384 (412)
+.+|+++++|.|++|+|++||...+ ++..++ .+++|++.+|. +++|+.|+|||+|||+.... .|..||+.+|+|
T Consensus 246 ~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~-~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~n 324 (452)
T TIGR03452 246 LDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDE-YGRTSARGVWALGDVSSPYQLKHVANAEARVVKHN 324 (452)
T ss_pred EcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCC-CcccCCCCEEEeecccCcccChhHHHHHHHHHHHH
Confidence 5678899999999999999998433 456677 67889999984 56799999999999996533 789999999999
Q ss_pred HHHh
Q 037065 385 ISEQ 388 (412)
Q Consensus 385 i~~~ 388 (412)
|.+.
T Consensus 325 i~~~ 328 (452)
T TIGR03452 325 LLHP 328 (452)
T ss_pred hcCC
Confidence 9754
No 56
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=1.5e-29 Score=259.79 Aligned_cols=274 Identities=23% Similarity=0.259 Sum_probs=187.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||||||||++|..|++.|++|+|||+.+.+||.... .+|.+ -...++.+.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y---------------GIP~~---------rlp~~vi~~ 361 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY---------------GIPEF---------RLPNQLIDD 361 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc---------------cCCCC---------cChHHHHHH
Confidence 689999999999999999999999999999999999886543 22222 223455666
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCC---
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYK--- 172 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~--- 172 (412)
..+..+..|++++.+..+-. .++.++ ....||+||+|||+ ..|..+.+||.+. .+ +....++.
T Consensus 362 ~i~~l~~~Gv~f~~n~~vG~----------dit~~~l~~~~yDAV~LAtGA-~~pr~l~IpG~dl-~G-V~~a~dfL~~~ 428 (944)
T PRK12779 362 VVEKIKLLGGRFVKNFVVGK----------TATLEDLKAAGFWKIFVGTGA-GLPTFMNVPGEHL-LG-VMSANEFLTRV 428 (944)
T ss_pred HHHHHHhhcCeEEEeEEecc----------EEeHHHhccccCCEEEEeCCC-CCCCcCCCCCCcC-cC-cEEHHHHHHHH
Confidence 55667778999887765410 134443 34579999999995 3678888888653 11 22211111
Q ss_pred ------------CCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHH
Q 037065 173 ------------SGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRL 240 (412)
Q Consensus 173 ------------~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
......+++|+|||+|.+|+|+|..+.+.|++|++++|++...+|.... +
T Consensus 429 ~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~-----e------------- 490 (944)
T PRK12779 429 NLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVE-----E------------- 490 (944)
T ss_pred HhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHH-----H-------------
Confidence 0112367999999999999999999999999999999987322221100 0
Q ss_pred HHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEe--------------
Q 037065 241 VDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEIT-------------- 304 (412)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~-------------- 304 (412)
.. .....+++++.. +.++.
T Consensus 491 ~~---------------------------------------------~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~ 525 (944)
T PRK12779 491 LH---------------------------------------------HALEEGINLAVLRAPREFIGDDHTHFVTHALLD 525 (944)
T ss_pred HH---------------------------------------------HHHHCCCEEEeCcceEEEEecCCCCEEEEEEEE
Confidence 00 000112222211 11111
Q ss_pred --------CCe--EEecCC--cEecccEEEEcCCCCCCCCCcc-ccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCc
Q 037065 305 --------KNG--ARFTDG--QEKEIDAIILATGYKSNVPTWL-KECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRG 370 (412)
Q Consensus 305 --------~~~--v~~~~g--~~~~~D~vi~atG~~p~~~~~l-~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~ 370 (412)
.++ ....+| .++++|.||+|+|+.|+. .+. ...++ .+++|.+.++..+.+|+.|+|||+||++.+
T Consensus 526 ~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~-~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G 604 (944)
T PRK12779 526 VNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANP-IMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARG 604 (944)
T ss_pred EEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCCh-hhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCC
Confidence 111 111133 368999999999999986 332 23467 678899988865678999999999999977
Q ss_pred cc---cchhhHHHHHHHHHHhhcc
Q 037065 371 LQ---GTALDADKIAQDISEQWRK 391 (412)
Q Consensus 371 ~~---~a~~~~~~~a~~i~~~~~~ 391 (412)
.. .|+.+|+.+|.+|.+++.-
T Consensus 605 ~~~vv~Ai~eGr~AA~~I~~~L~~ 628 (944)
T PRK12779 605 GSTAIRAAGDGQAAAKEIVGEIPF 628 (944)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 54 8999999999999998765
No 57
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=1.3e-28 Score=230.62 Aligned_cols=283 Identities=16% Similarity=0.155 Sum_probs=185.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||+|++|+++|..|++.|++|+++|+.+.+++.+... ++.. ....+.+...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~---------------~~~~--------~~~~~~~~~~ 74 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG---------------IPEF--------RIPIERVREG 74 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec---------------Cccc--------ccCHHHHHHH
Confidence 5689999999999999999999999999999998877654221 0000 1123444445
Q ss_pred HHHHHHHcCCcccccceEEEEEE--cCCCCcEEEE---EcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeecc--
Q 037065 97 IESYASHFKIQPKFKQAVQTALF--DHASGFWRVQ---TQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTS-- 169 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~~v~---~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~-- 169 (412)
++++.+ .+++++.++.|..++. ......+... .++..+.||+||+|||+ ..+..|.+||.+.. .++...
T Consensus 75 ~~~l~~-~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs-~~~~~~~ipg~~~~--~v~~~~~~ 150 (352)
T PRK12770 75 VKELEE-AGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGT-WKSRKLGIPGEDLP--GVYSALEY 150 (352)
T ss_pred HHHHHh-CCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCC-CCCCcCCCCCcccc--CceeHHHH
Confidence 555444 4888888877755432 1111222211 12234799999999994 25777888876531 122110
Q ss_pred -----CC----CCC---CCCCCCeEEEEcCCCCHHHHHHHHhhcCCc-cEEEEeCCCccccccccCCChhhHHHHHHHhc
Q 037065 170 -----KY----KSG---SEFKNQKVLVIGCGNSGMEVSLDLCRHNAI-PHMVARNSVHVLPREIFGFSTFGIAMALLRWF 236 (412)
Q Consensus 170 -----~~----~~~---~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (412)
.. ... ....+++++|||+|.+|+|+|..+...|.+ |+++.+++....+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~----------------- 213 (352)
T PRK12770 151 LFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAG----------------- 213 (352)
T ss_pred HHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCC-----------------
Confidence 00 011 123468999999999999999999988886 999998762100000
Q ss_pred chHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC-e---EEe
Q 037065 237 PLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN-G---ARF 310 (412)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~-~---v~~ 310 (412)
....+.++..+++++.+ +.++..+ . +.+
T Consensus 214 ----------------------------------------------~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~ 247 (352)
T PRK12770 214 ----------------------------------------------KYEIERLIARGVEFLELVTPVRIIGEGRVEGVEL 247 (352)
T ss_pred ----------------------------------------------HHHHHHHHHcCCEEeeccCceeeecCCcEeEEEE
Confidence 00012233344555443 3343321 1 111
Q ss_pred --------------------cCCcEecccEEEEcCCCCCCCCCcccc-Ccc-CCCCCCCCCCCCCCCCCCCCeEEEeeec
Q 037065 311 --------------------TDGQEKEIDAIILATGYKSNVPTWLKE-CDF-FTKDGMPKTPFPNGWKGENGLYTVGFTR 368 (412)
Q Consensus 311 --------------------~~g~~~~~D~vi~atG~~p~~~~~l~~-~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~ 368 (412)
.+++++++|.||+++|++|+. .+..+ .++ ++++|++.++. ..+++.|+||++|||+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~-~l~~~~~g~~~~~~g~i~vd~-~~~t~~~~vyaiGD~~ 325 (352)
T PRK12770 248 AKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP-PFAKECLGIELNRKGEIVVDE-KHMTSREGVFAAGDVV 325 (352)
T ss_pred EEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc-hhhhcccCceecCCCcEeeCC-CcccCCCCEEEEcccc
Confidence 123479999999999999997 55555 677 67788898884 5678999999999998
Q ss_pred Cccc---cchhhHHHHHHHHHHhhcc
Q 037065 369 RGLQ---GTALDADKIAQDISEQWRK 391 (412)
Q Consensus 369 ~~~~---~a~~~~~~~a~~i~~~~~~ 391 (412)
..+. .|+.+|+.+|.+|.+.|..
T Consensus 326 ~~~~~~~~A~~~g~~aa~~i~~~l~~ 351 (352)
T PRK12770 326 TGPSKIGKAIKSGLRAAQSIHEWLDL 351 (352)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHhc
Confidence 7433 8899999999999988753
No 58
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=2.7e-29 Score=256.34 Aligned_cols=274 Identities=19% Similarity=0.250 Sum_probs=185.1
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
..++|+|||||||||++|..|+++|++|+|||+.+.+||.+.. .++.+.+ ..++.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~~rl---------p~~~~~ 485 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY---------------GIPEFRL---------PKKIVD 485 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee---------------cCCCCCC---------CHHHHH
Confidence 4679999999999999999999999999999998888876432 2222221 123444
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCC--
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYK-- 172 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~-- 172 (412)
...+.+++++++++.++.+ +.. +..++ ....||+||+|||+ +.|..+.+||.+. . .+++..++.
T Consensus 486 ~~~~~l~~~gv~~~~~~~v------~~~----v~~~~l~~~~ydavvlAtGa-~~~~~l~ipG~~~-~-gV~~~~~~l~~ 552 (752)
T PRK12778 486 VEIENLKKLGVKFETDVIV------GKT----ITIEELEEEGFKGIFIASGA-GLPNFMNIPGENS-N-GVMSSNEYLTR 552 (752)
T ss_pred HHHHHHHHCCCEEECCCEE------CCc----CCHHHHhhcCCCEEEEeCCC-CCCCCCCCCCCCC-C-CcEEHHHHHHH
Confidence 4445566779998877654 111 33333 35679999999995 3577778888653 1 122221111
Q ss_pred -----------CCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCc-cEEEEeCCCccccccccCCChhhHHHHHHHhcchHH
Q 037065 173 -----------SGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAI-PHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRL 240 (412)
Q Consensus 173 -----------~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
......+++|+|||+|.+|+|+|..+.+.|.+ |++++|++...+|.... +
T Consensus 553 ~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~-----e------------- 614 (752)
T PRK12778 553 VNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLE-----E------------- 614 (752)
T ss_pred HhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----H-------------
Confidence 11124578999999999999999999999987 99999987322222110 0
Q ss_pred HHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeC--C----eEEe--
Q 037065 241 VDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITK--N----GARF-- 310 (412)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~--~----~v~~-- 310 (412)
.+.++..+++++.. +.++.. + +|.+
T Consensus 615 ---------------------------------------------~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~ 649 (752)
T PRK12778 615 ---------------------------------------------VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQK 649 (752)
T ss_pred ---------------------------------------------HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEE
Confidence 01112223333322 222210 0 0111
Q ss_pred ----------------cCC--cEecccEEEEcCCCCCCCCCccccC-cc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCc
Q 037065 311 ----------------TDG--QEKEIDAIILATGYKSNVPTWLKEC-DF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRG 370 (412)
Q Consensus 311 ----------------~~g--~~~~~D~vi~atG~~p~~~~~l~~~-~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~ 370 (412)
.+| .++++|.||+|+|+.|+. .+++.. ++ .+++|++.+|. ..+|+.|+|||+||++.+
T Consensus 650 ~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~-~l~~~~~gl~~~~~G~i~vd~-~~~Ts~~gVfA~GD~~~g 727 (752)
T PRK12778 650 MELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNP-LVPSSIPGLELNRKGTIVVDE-EMQSSIPGIYAGGDIVRG 727 (752)
T ss_pred EEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCc-cccccccCceECCCCCEEeCC-CCCCCCCCEEEeCCccCC
Confidence 012 268999999999999997 455554 67 67789998884 458999999999999975
Q ss_pred cc---cchhhHHHHHHHHHHhhcc
Q 037065 371 LQ---GTALDADKIAQDISEQWRK 391 (412)
Q Consensus 371 ~~---~a~~~~~~~a~~i~~~~~~ 391 (412)
+. .|+.+|+.+|.+|.++|.+
T Consensus 728 ~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 728 GATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcc
Confidence 43 8999999999999998864
No 59
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=5.4e-29 Score=249.29 Aligned_cols=276 Identities=16% Similarity=0.209 Sum_probs=186.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||+|++|+++|..|++.|++|+|||+.+.+||.+... ++.+ ....++.++
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------ip~~---------~~~~~~~~~ 248 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------IPRF---------RLPESVIDA 248 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------CCCC---------CCCHHHHHH
Confidence 5799999999999999999999999999999999888866431 1111 112344455
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCC-----
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKY----- 171 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~----- 171 (412)
..+.+.++++++++++.+ .++ +...+....||+||+|||++ .+..+.+||.+. .+ ++...++
T Consensus 249 ~~~~l~~~Gv~i~~~~~v-~~d---------v~~~~~~~~~DaVilAtGa~-~~~~~~ipG~~~-~g-v~~~~~~l~~~~ 315 (652)
T PRK12814 249 DIAPLRAMGAEFRFNTVF-GRD---------ITLEELQKEFDAVLLAVGAQ-KASKMGIPGEEL-PG-VISGIDFLRNVA 315 (652)
T ss_pred HHHHHHHcCCEEEeCCcc-cCc---------cCHHHHHhhcCEEEEEcCCC-CCCCCCCCCcCc-CC-cEeHHHHHHHhh
Confidence 555667778888777643 111 22222223599999999942 234556777543 11 2221111
Q ss_pred CCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCC-ccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHHH
Q 037065 172 KSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNA-IPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMAN 250 (412)
Q Consensus 172 ~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (412)
.......+++|+|||+|.+|+|+|..+.+.|. +|++++|++...+|.... +.
T Consensus 316 ~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~-----ei---------------------- 368 (652)
T PRK12814 316 LGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRA-----EI---------------------- 368 (652)
T ss_pred cCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HH----------------------
Confidence 11224568999999999999999999999986 699999987333333211 00
Q ss_pred HhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEe-------------------CCe--
Q 037065 251 ITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEIT-------------------KNG-- 307 (412)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~-------------------~~~-- 307 (412)
......+++++.. +.++. .++
T Consensus 369 ------------------------------------~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~ 412 (652)
T PRK12814 369 ------------------------------------EEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRR 412 (652)
T ss_pred ------------------------------------HHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCC
Confidence 0000112222211 11111 011
Q ss_pred -EEecCCc--EecccEEEEcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHH
Q 037065 308 -ARFTDGQ--EKEIDAIILATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADK 380 (412)
Q Consensus 308 -v~~~~g~--~~~~D~vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~ 380 (412)
....+|+ .+++|.||+|+|+.|+. .+++..++ .+++|++.+|..+++|+.|+|||+||++..+. .|+.+|+.
T Consensus 413 ~~~~~~g~~~~i~~D~VI~AiG~~p~~-~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~ 491 (652)
T PRK12814 413 RPVPVEGSEFTLQADTVISAIGQQVDP-PIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKR 491 (652)
T ss_pred cceecCCceEEEECCEEEECCCCcCCc-ccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHH
Confidence 0111233 68999999999999997 67777777 67789999987678899999999999986544 79999999
Q ss_pred HHHHHHHhhcccc
Q 037065 381 IAQDISEQWRKIK 393 (412)
Q Consensus 381 ~a~~i~~~~~~~~ 393 (412)
+|.+|.+++.+..
T Consensus 492 AA~~I~~~L~g~~ 504 (652)
T PRK12814 492 AAHAIDLFLNGKP 504 (652)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999998754
No 60
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.96 E-value=6.4e-29 Score=252.49 Aligned_cols=286 Identities=19% Similarity=0.267 Sum_probs=177.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+||||||||+++|..|++.|++|+|+|+.+.+||..... ++.+. .. .+..++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~---------------IP~~r--------lp-~e~l~~ 592 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI---------------IPEFR--------IS-AESIQK 592 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec---------------ccccC--------CC-HHHHHH
Confidence 5799999999999999999999999999999999888754221 11111 12 233343
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCC---
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYK--- 172 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~--- 172 (412)
..+.....+++++++... . +.... ....||+||+|||++ .+..+.++|... ..+...++.
T Consensus 593 ~ie~l~~~GVe~~~g~~~-d-----------~~ve~l~~~gYDaVIIATGA~-~~~~l~I~G~~~---~v~~avefL~~~ 656 (1012)
T TIGR03315 593 DIELVKFHGVEFKYGCSP-D-----------LTVAELKNQGYKYVILAIGAW-KHGPLRLEGGGE---RVLKSLEFLRAF 656 (1012)
T ss_pred HHHHHHhcCcEEEEeccc-c-----------eEhhhhhcccccEEEECCCCC-CCCCCCcCCCCc---ceeeHHHHHHHh
Confidence 344555668887766321 0 11111 245699999999952 234445665432 122211111
Q ss_pred -C--CCCCCCCeEEEEcCCCCHHHHHHHHhhc-CC-ccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHH
Q 037065 173 -S--GSEFKNQKVLVIGCGNSGMEVSLDLCRH-NA-IPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLL 247 (412)
Q Consensus 173 -~--~~~~~~~~v~vvG~G~~~~e~a~~l~~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (412)
. .....+++|+|||+|.+|+|+|..+.+. |. +|++++|+....+|.... + .....
T Consensus 657 ~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~e-----E-------------l~~al-- 716 (1012)
T TIGR03315 657 KEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASRE-----E-------------LEEAL-- 716 (1012)
T ss_pred hccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHH-----H-------------HHHHH--
Confidence 1 1224589999999999999999998886 74 899999987433332211 0 00000
Q ss_pred HHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC-ceEEeCCe--EEecCCc--EecccEEE
Q 037065 248 MANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG-VKEITKNG--ARFTDGQ--EKEIDAII 322 (412)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-v~~i~~~~--v~~~~g~--~~~~D~vi 322 (412)
..|+.... ......+..+++++..- +.+.+.++ ..+.+|+ ++++|.||
T Consensus 717 ----------eeGVe~~~-----------------~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VI 769 (1012)
T TIGR03315 717 ----------EDGVDFKE-----------------LLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVI 769 (1012)
T ss_pred ----------HcCCEEEe-----------------CCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEE
Confidence 01111000 00000111112221100 00111111 1222344 68999999
Q ss_pred EcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHHHHHhhc
Q 037065 323 LATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQDISEQWR 390 (412)
Q Consensus 323 ~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~i~~~~~ 390 (412)
+|+|+.|+. .+++..++ .+++|++.+|..+.+|+.|+|||+|||+.++. .|+.+|+.+|.+|.+...
T Consensus 770 vAiG~~Pnt-~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~~ 840 (1012)
T TIGR03315 770 AAVGEQVDT-DLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSREG 840 (1012)
T ss_pred EecCCcCCh-HHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcccc
Confidence 999999997 67788888 68889999986567899999999999986544 899999999999986543
No 61
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.5e-29 Score=201.99 Aligned_cols=292 Identities=17% Similarity=0.221 Sum_probs=211.0
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
++.+|+|||+||++.++|+.+++..++-+++|-.- .++. -++=.+........+|++ ++-....++.+
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~-~~~i-----~pGGQLtTTT~veNfPGF------Pdgi~G~~l~d 74 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM-ANGI-----APGGQLTTTTDVENFPGF------PDGITGPELMD 74 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeee-ccCc-----CCCceeeeeeccccCCCC------CcccccHHHHH
Confidence 35689999999999999999999999999999642 1111 111111111222223322 33467899999
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCC--CCCccceeeccCCCC
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGL--DKFNGHVLHTSKYKS 173 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~--~~~~~~~~~~~~~~~ 173 (412)
.+++++.+++.++... .|.+++... ..|.+.++.+.+.+|.||+|||+..+ ...+||. ..|+.+.+..|..|+
T Consensus 75 ~mrkqs~r~Gt~i~tE-tVskv~~ss--kpF~l~td~~~v~~~avI~atGAsAk--Rl~~pg~ge~~fWqrGiSaCAVCD 149 (322)
T KOG0404|consen 75 KMRKQSERFGTEIITE-TVSKVDLSS--KPFKLWTDARPVTADAVILATGASAK--RLHLPGEGEGEFWQRGISACAVCD 149 (322)
T ss_pred HHHHHHHhhcceeeee-ehhhccccC--CCeEEEecCCceeeeeEEEeccccee--eeecCCCCcchHHhcccchhhccc
Confidence 9999999999988744 688898877 78999998899999999999996433 2233443 447778888898888
Q ss_pred CCC--CCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHHHH
Q 037065 174 GSE--FKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMANI 251 (412)
Q Consensus 174 ~~~--~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (412)
... +++|-.+|||||.+++|-|..|...+++|++++|+++ +-. +. .|
T Consensus 150 Gaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~-fRA-----------s~----~M--------------- 198 (322)
T KOG0404|consen 150 GAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDH-FRA-----------SK----IM--------------- 198 (322)
T ss_pred CcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhh-hhH-----------HH----HH---------------
Confidence 765 8899999999999999999999999999999999992 200 00 00
Q ss_pred hhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC-----eE-----EecCCcEeccc
Q 037065 252 TLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN-----GA-----RFTDGQEKEID 319 (412)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~-----~v-----~~~~g~~~~~D 319 (412)
..+..++.+|+++.+ +.+.-.+ ++ ...+.+.++++
T Consensus 199 ---------------------------------q~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~ 245 (322)
T KOG0404|consen 199 ---------------------------------QQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVS 245 (322)
T ss_pred ---------------------------------HHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccc
Confidence 012334456666655 2222111 12 22334579999
Q ss_pred EEEEcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCc----cccchhhHHHHHHHHHHhhc
Q 037065 320 AIILATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRG----LQGTALDADKIAQDISEQWR 390 (412)
Q Consensus 320 ~vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~----~~~a~~~~~~~a~~i~~~~~ 390 (412)
-++.++|-.|++ .+++. .+ +|++|++++.+....|++|++||+||.... ...|...|.++|-...++|.
T Consensus 246 GlFf~IGH~Pat-~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaaldAe~yL~ 319 (322)
T KOG0404|consen 246 GLFFAIGHSPAT-KFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAALDAERYLT 319 (322)
T ss_pred eeEEEecCCchh-hHhcC-ceeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccchhhhhhHHHHhh
Confidence 999999999998 77777 45 899999998877889999999999998844 33556666666666555554
No 62
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.96 E-value=1.1e-28 Score=239.27 Aligned_cols=286 Identities=19% Similarity=0.225 Sum_probs=187.8
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
..++|+|||+|++|+++|..|++.|++|+|||+.+.+||.+... ++. +....++..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip~---------~~~~~~~~~ 197 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------------IPD---------FKLEKEVID 197 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------------CCc---------ccCCHHHHH
Confidence 35799999999999999999999999999999999888754321 111 111233445
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCC----
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKY---- 171 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~---- 171 (412)
...+.+.++++++++++.+. .+ +........||+||+|||+ ..+..+.++|.+. .+ +.+..++
T Consensus 198 ~~~~~~~~~gv~~~~~~~v~-~~---------~~~~~~~~~~d~vvlAtGa-~~~~~l~ipG~~~-~g-V~~~~~~l~~~ 264 (471)
T PRK12810 198 RRIELMEAEGIEFRTNVEVG-KD---------ITAEELLAEYDAVFLGTGA-YKPRDLGIPGRDL-DG-VHFAMDFLIQN 264 (471)
T ss_pred HHHHHHHhCCcEEEeCCEEC-Cc---------CCHHHHHhhCCEEEEecCC-CCCCcCCCCCccC-CC-cEEHHHHHHHH
Confidence 55556677899988887552 11 1111123579999999994 2366667777543 11 2211100
Q ss_pred ---------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCC-ccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHH
Q 037065 172 ---------KSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNA-IPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLV 241 (412)
Q Consensus 172 ---------~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (412)
.......+++|+|||+|.+|+|+|..+...|. +|+.+.+.+ ++....... ..+
T Consensus 265 ~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~---~~~~~~~~~---------~~~----- 327 (471)
T PRK12810 265 TRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP---MPPSRRNKN---------NPW----- 327 (471)
T ss_pred HhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC---CCccccccc---------cCC-----
Confidence 11123468899999999999999999888886 677544332 111110000 000
Q ss_pred HHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccc-hhhhhhccCCEEEEcC--ceEEeC--Ce---EE----
Q 037065 242 DKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDV-GALSQIKSGKIKVVGG--VKEITK--NG---AR---- 309 (412)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~~~--v~~i~~--~~---v~---- 309 (412)
+.+.. ...+.++..+++++.. +.++.. +. |.
T Consensus 328 -------------------------------------~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~ 370 (471)
T PRK12810 328 -------------------------------------PYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRT 370 (471)
T ss_pred -------------------------------------cccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEE
Confidence 00000 0123334456666654 555542 11 21
Q ss_pred -ecCC---------cEecccEEEEcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cch
Q 037065 310 -FTDG---------QEKEIDAIILATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTA 375 (412)
Q Consensus 310 -~~~g---------~~~~~D~vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~ 375 (412)
..+| .++++|.||+|+|++|+...+++..++ .+++|++.++..+++|+.|+||++||++.... .|+
T Consensus 371 ~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~Av 450 (471)
T PRK12810 371 ELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAI 450 (471)
T ss_pred EecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHHH
Confidence 1122 478999999999999997568888888 77889988874567899999999999997543 799
Q ss_pred hhHHHHHHHHHHhhccc
Q 037065 376 LDADKIAQDISEQWRKI 392 (412)
Q Consensus 376 ~~~~~~a~~i~~~~~~~ 392 (412)
.+|+.+|.+|.+++.+.
T Consensus 451 ~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 451 AEGRQAARAIDAYLMGS 467 (471)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999998764
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.96 E-value=2e-28 Score=253.77 Aligned_cols=292 Identities=19% Similarity=0.192 Sum_probs=192.9
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+||||||+||++|..|+++|++|+|||+.+.+||.... .++. +....++.+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~---------------gip~---------~rl~~e~~~~ 485 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY---------------GIPS---------FRLPRDIIDR 485 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec---------------cCCc---------cCCCHHHHHH
Confidence 579999999999999999999999999999999888764332 1111 1222455566
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc--eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCC---
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD--SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKY--- 171 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~--~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~--- 171 (412)
..+..++++++++.+..+ ..+ +.... ....||+||||||+ ..|..+.+||.+. . .+++..++
T Consensus 486 ~~~~l~~~Gv~~~~~~~v-g~~---------~~~~~l~~~~~yDaViIATGa-~~pr~l~IpG~~l-~-gV~~a~~fL~~ 552 (1006)
T PRK12775 486 EVQRLVDIGVKIETNKVI-GKT---------FTVPQLMNDKGFDAVFLGVGA-GAPTFLGIPGEFA-G-QVYSANEFLTR 552 (1006)
T ss_pred HHHHHHHCCCEEEeCCcc-CCc---------cCHHHHhhccCCCEEEEecCC-CCCCCCCCCCcCC-C-CcEEHHHHHHH
Confidence 666677789998877543 111 22111 13469999999995 3577788888643 1 23332211
Q ss_pred -----------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCc-cEEEEeCCCccccccccCCChhhHHHHHHHhcchH
Q 037065 172 -----------KSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAI-PHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLR 239 (412)
Q Consensus 172 -----------~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
++.....+++|+|||+|.+|+|+|..+.++|.+ |+++.|+....+|....
T Consensus 553 ~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~------------------ 614 (1006)
T PRK12775 553 VNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIE------------------ 614 (1006)
T ss_pred HHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHH------------------
Confidence 112234689999999999999999999999874 78888876222221100
Q ss_pred HHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEe--CCe----EEe-
Q 037065 240 LVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEIT--KNG----ARF- 310 (412)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~--~~~----v~~- 310 (412)
.++.++..+|+++.. +.++. .++ |.+
T Consensus 615 ---------------------------------------------e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~ 649 (1006)
T PRK12775 615 ---------------------------------------------EIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVE 649 (1006)
T ss_pred ---------------------------------------------HHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEE
Confidence 011222234444332 23321 110 111
Q ss_pred ----------------cCC--cEecccEEEEcCCCCCCCCCcccc-Ccc-CCCCCCCCCCC----CCCCCCCCCeEEEee
Q 037065 311 ----------------TDG--QEKEIDAIILATGYKSNVPTWLKE-CDF-FTKDGMPKTPF----PNGWKGENGLYTVGF 366 (412)
Q Consensus 311 ----------------~~g--~~~~~D~vi~atG~~p~~~~~l~~-~~~-~~~~G~~~~~~----~~~~~~~~~iya~Gd 366 (412)
.+| .++++|.||+|+|+.|+. .++.. .++ +++.|.+.++. .+++|+.|+|||+||
T Consensus 650 ~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~-~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGD 728 (1006)
T PRK12775 650 EMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANP-IITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGD 728 (1006)
T ss_pred EEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCCh-hhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecC
Confidence 123 268999999999999997 45444 356 67788888774 367899999999999
Q ss_pred ecCccc---cchhhHHHHHHHHHHhhcccccccCCCCCccccCCCC
Q 037065 367 TRRGLQ---GTALDADKIAQDISEQWRKIKDLNNNNNNNYTSNSPS 409 (412)
Q Consensus 367 ~~~~~~---~a~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~ 409 (412)
++.++. .|+.+|+.+|.+|..++.+................|.
T Consensus 729 v~~G~~~vv~Ai~~Gr~AA~~I~~~L~~~~~~~~~~~~~~~~~~~~ 774 (1006)
T PRK12775 729 IVTGGATVILAMGAGRRAARSIATYLRLGKKWPITAEEAAAFQPGK 774 (1006)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccccccccc
Confidence 987654 8999999999999999987654433333333444443
No 64
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.96 E-value=5.1e-29 Score=215.76 Aligned_cols=188 Identities=30% Similarity=0.630 Sum_probs=137.2
Q ss_pred EEECCChHHHHHHHHHHHcCCC-eEEEecCCCCCcccCCCCCCCeeeecCCcc---ccCCCCC---CC-----CCCCCCC
Q 037065 21 IIVGAGPSGLAVSACLSQQGLP-SLILERSDCLASLWKHRTYDRLKLHLPKQF---CELPLFG---FP-----ENFPKYP 88 (412)
Q Consensus 21 vIIG~G~aGl~~A~~l~~~g~~-v~vie~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~-----~~~~~~~ 88 (412)
+|||||++||++|..|++.|.+ ++|||+++.+|+.|.. .+....+..|..+ +.++.+. +. .....++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR-YYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC-H-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE-eCCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 6999999999999999999998 9999999999999974 2223333333322 1122111 00 0123468
Q ss_pred CHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcce-EEEeCEEEEeeCCCCCCCCCCCCC-CCCCcccee
Q 037065 89 TKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDS-EYISKWLVVATGENAEPVFPDVVG-LDKFNGHVL 166 (412)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~-~~~~d~vIlAtG~~~~p~~p~~~g-~~~~~~~~~ 166 (412)
+..++.+|+++++++++++++++++|+++...+ +.|.|++.+. ++.||+||+|||..+.|..|.+++ ... ..+
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~---~~~ 154 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEIRFNTRVESVRRDG--DGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR---PII 154 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGEETS--EEEEEEET--TTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS---EEE
T ss_pred CHHHHHHHHHHHHhhcCcccccCCEEEEEEEec--cEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc---ceE
Confidence 899999999999999999999999999999987 6699999995 999999999999888999999998 322 678
Q ss_pred eccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCc
Q 037065 167 HTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVH 214 (412)
Q Consensus 167 ~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~ 214 (412)
|+.++.....+.+++|+|||+|.||+|+|..|++.+.+|++++|++.|
T Consensus 155 h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 155 HSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp EGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred ehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 998888878889999999999999999999999999999999999965
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=1.1e-27 Score=240.97 Aligned_cols=275 Identities=19% Similarity=0.233 Sum_probs=184.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||+||+||++|..|++.|++|+|+|+.+.+||.+... ++.+ ....++.+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------------ip~~---------~l~~~~~~~ 382 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------------IPAF---------KLDKSLLAR 382 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------------CCCc---------cCCHHHHHH
Confidence 5799999999999999999999999999999999888865431 1111 112344555
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeec--------
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHT-------- 168 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~-------- 168 (412)
..+.+++++++++.++.|.. + +........||.|++|||+ ..+..+.++|... .+ ++..
T Consensus 383 ~~~~~~~~Gv~~~~~~~v~~-~---------i~~~~~~~~~DavilAtGa-~~~~~l~i~g~~~-~G-v~~a~~~l~~~~ 449 (654)
T PRK12769 383 RREIFSAMGIEFELNCEVGK-D---------ISLESLLEDYDAVFVGVGT-YRSMKAGLPNEDA-PG-VYDALPFLIANT 449 (654)
T ss_pred HHHHHHHCCeEEECCCEeCC-c---------CCHHHHHhcCCEEEEeCCC-CCCCCCCCCCCCC-CC-eEEhHHHHHHHH
Confidence 55666778999888876521 0 1111212479999999996 2333445555543 11 1100
Q ss_pred ------cCCCC--CCCCCCCeEEEEcCCCCHHHHHHHHhhcCC-ccEEEEeCCCccccccccCCChhhHHHHHHHhcchH
Q 037065 169 ------SKYKS--GSEFKNQKVLVIGCGNSGMEVSLDLCRHNA-IPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLR 239 (412)
Q Consensus 169 ------~~~~~--~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
..... .....+++|+|||+|.+|+|.|..+.++|. +|++++|++...+|....
T Consensus 450 ~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~------------------ 511 (654)
T PRK12769 450 KQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKK------------------ 511 (654)
T ss_pred hhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHH------------------
Confidence 00000 112467899999999999999999999986 699999987332332211
Q ss_pred HHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEe--C-Ce---EEe-
Q 037065 240 LVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEIT--K-NG---ARF- 310 (412)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~--~-~~---v~~- 310 (412)
.++.++..+++++.. +.++. . +. |.+
T Consensus 512 ---------------------------------------------e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~ 546 (654)
T PRK12769 512 ---------------------------------------------EVKNAREEGANFEFNVQPVALELNEQGHVCGIRFL 546 (654)
T ss_pred ---------------------------------------------HHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEE
Confidence 011122233333322 23321 1 10 111
Q ss_pred -----------------cCCc--EecccEEEEcCCCCCCCCCccccCcc-CCCCCCCCCCCC---CCCCCCCCeEEEeee
Q 037065 311 -----------------TDGQ--EKEIDAIILATGYKSNVPTWLKECDF-FTKDGMPKTPFP---NGWKGENGLYTVGFT 367 (412)
Q Consensus 311 -----------------~~g~--~~~~D~vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~---~~~~~~~~iya~Gd~ 367 (412)
..|+ ++++|.||+|+|+.|+...+++..++ ++++|.+.++.. +++|+.|+|||+||+
T Consensus 547 ~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~ 626 (654)
T PRK12769 547 RTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDA 626 (654)
T ss_pred EEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCc
Confidence 1122 68999999999999996567888888 788899887732 368999999999999
Q ss_pred cCccc---cchhhHHHHHHHHHHhhcc
Q 037065 368 RRGLQ---GTALDADKIAQDISEQWRK 391 (412)
Q Consensus 368 ~~~~~---~a~~~~~~~a~~i~~~~~~ 391 (412)
..+.. .|+.+|+.+|.+|.++|..
T Consensus 627 ~~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 627 VRGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 97654 7999999999999998764
No 66
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.96 E-value=8.9e-28 Score=232.01 Aligned_cols=274 Identities=17% Similarity=0.227 Sum_probs=184.2
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
..++|+|||+|++|+++|..|++.|++|+|+|+.+.+||.+... ++.+ ....++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g---------------ip~~---------~~~~~~~~ 195 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG---------------IPSF---------KLDKAVLS 195 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec---------------Cccc---------cCCHHHHH
Confidence 35799999999999999999999999999999999888755321 1111 11234555
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCC-CCCCCCCCCCCccceeecc-----
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEP-VFPDVVGLDKFNGHVLHTS----- 169 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p-~~p~~~g~~~~~~~~~~~~----- 169 (412)
...+.+++++++++.++.|..- +...+....||.||+||| +.+ ..+.++|.+. .+ +.+..
T Consensus 196 ~~~~~~~~~Gv~~~~~~~v~~~----------~~~~~~~~~~D~vilAtG--a~~~~~~~i~g~~~-~g-V~~a~~~l~~ 261 (467)
T TIGR01318 196 RRREIFTAMGIEFHLNCEVGRD----------ISLDDLLEDYDAVFLGVG--TYRSMRGGLPGEDA-PG-VLQALPFLIA 261 (467)
T ss_pred HHHHHHHHCCCEEECCCEeCCc----------cCHHHHHhcCCEEEEEeC--CCCCCcCCCCCcCC-CC-cEEHHHHHHH
Confidence 6666777889999888766210 122222347999999999 443 3345666543 11 11100
Q ss_pred ------CCC-----CCCCCCCCeEEEEcCCCCHHHHHHHHhhcCC-ccEEEEeCCCccccccccCCChhhHHHHHHHhcc
Q 037065 170 ------KYK-----SGSEFKNQKVLVIGCGNSGMEVSLDLCRHNA-IPHMVARNSVHVLPREIFGFSTFGIAMALLRWFP 237 (412)
Q Consensus 170 ------~~~-----~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (412)
... ......+++++|+|+|.+|+|.|..+.++|. +|++++|++...+|.... +
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~-----e---------- 326 (467)
T TIGR01318 262 NTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRR-----E---------- 326 (467)
T ss_pred HHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHH-----H----------
Confidence 000 0012357899999999999999999999985 799999987333332211 0
Q ss_pred hHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeC--Ce----EE
Q 037065 238 LRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITK--NG----AR 309 (412)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~--~~----v~ 309 (412)
++.++..+++++.. +.++.. ++ |+
T Consensus 327 ------------------------------------------------~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~ 358 (467)
T TIGR01318 327 ------------------------------------------------VANAREEGVEFLFNVQPVYIECDEDGRVTGVG 358 (467)
T ss_pred ------------------------------------------------HHHHHhcCCEEEecCCcEEEEECCCCeEEEEE
Confidence 11122233443332 333321 00 11
Q ss_pred e--------------------cCCcEecccEEEEcCCCCCCCCCccccCcc-CCCCCCCCCCC---CCCCCCCCCeEEEe
Q 037065 310 F--------------------TDGQEKEIDAIILATGYKSNVPTWLKECDF-FTKDGMPKTPF---PNGWKGENGLYTVG 365 (412)
Q Consensus 310 ~--------------------~~g~~~~~D~vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~---~~~~~~~~~iya~G 365 (412)
+ .+..++++|.||+++|++|+...+++..++ .+++|++.++. .+++|+.++||++|
T Consensus 359 ~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~G 438 (467)
T TIGR01318 359 LVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGG 438 (467)
T ss_pred EEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEEC
Confidence 1 112368999999999999986567777777 67789888773 35678999999999
Q ss_pred eecCccc---cchhhHHHHHHHHHHhhc
Q 037065 366 FTRRGLQ---GTALDADKIAQDISEQWR 390 (412)
Q Consensus 366 d~~~~~~---~a~~~~~~~a~~i~~~~~ 390 (412)
|+..... .|+.+|+.+|.+|.++|.
T Consensus 439 D~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 439 DAVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CcCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 9997654 799999999999998763
No 67
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=7.7e-27 Score=233.78 Aligned_cols=277 Identities=17% Similarity=0.245 Sum_probs=185.2
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
..++|+|||+|++||++|..|++.|++|+|+|+.+.+||.|... ++.+. .. ..+.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g---------------ip~~~--------l~-~~~~~ 364 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG---------------IPPFK--------LD-KTVLS 364 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc---------------CCccc--------CC-HHHHH
Confidence 36899999999999999999999999999999999998876542 11111 11 34455
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeec-------
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHT------- 168 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~------- 168 (412)
...+.++..+++++++++|.. . +...+....||.|++|||+. .+..+.++|.+. .+ +++.
T Consensus 365 ~~~~~~~~~Gv~~~~~~~v~~------~----~~~~~l~~~~DaV~latGa~-~~~~~~i~g~~~-~g-v~~a~~~l~~~ 431 (639)
T PRK12809 365 QRREIFTAMGIDFHLNCEIGR------D----ITFSDLTSEYDAVFIGVGTY-GMMRADLPHEDA-PG-VIQALPFLTAH 431 (639)
T ss_pred HHHHHHHHCCeEEEcCCccCC------c----CCHHHHHhcCCEEEEeCCCC-CCCCCCCCCCcc-CC-cEeHHHHHHHH
Confidence 555667778999888876521 0 12222234799999999952 334455666543 11 1110
Q ss_pred ----cCCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhcCC-ccEEEEeCCCccccccccCCChhhHHHHHHHhcch
Q 037065 169 ----SKYKS-----GSEFKNQKVLVIGCGNSGMEVSLDLCRHNA-IPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPL 238 (412)
Q Consensus 169 ----~~~~~-----~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (412)
..... .....+++++|+|+|.+|+|.|..+.++|+ +|++++|++...+|.... +
T Consensus 432 ~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~-----e----------- 495 (639)
T PRK12809 432 TRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRK-----E----------- 495 (639)
T ss_pred HHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----H-----------
Confidence 00000 123457899999999999999999999985 799999987322222110 0
Q ss_pred HHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEe------------
Q 037065 239 RLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEIT------------ 304 (412)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~------------ 304 (412)
+...+..+++++.. +.++.
T Consensus 496 -----------------------------------------------~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~ 528 (639)
T PRK12809 496 -----------------------------------------------VVNAREEGVEFQFNVQPQYIACDEDGRLTAVGL 528 (639)
T ss_pred -----------------------------------------------HHHHHHcCCeEEeccCCEEEEECCCCeEEEEEE
Confidence 00111223333222 22221
Q ss_pred ---------CCe---EEecCC--cEecccEEEEcCCCCCCCCCccccCcc-CCCCCCCCCCC---CCCCCCCCCeEEEee
Q 037065 305 ---------KNG---ARFTDG--QEKEIDAIILATGYKSNVPTWLKECDF-FTKDGMPKTPF---PNGWKGENGLYTVGF 366 (412)
Q Consensus 305 ---------~~~---v~~~~g--~~~~~D~vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~---~~~~~~~~~iya~Gd 366 (412)
.++ .....| .++++|.||+|+|+.|+...+++..++ ++++|++.++. .+++|+.|+|||+||
T Consensus 529 ~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD 608 (639)
T PRK12809 529 IRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGD 608 (639)
T ss_pred EEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCC
Confidence 001 011112 368999999999999986567887888 77889887763 246899999999999
Q ss_pred ecCccc---cchhhHHHHHHHHHHhhccc
Q 037065 367 TRRGLQ---GTALDADKIAQDISEQWRKI 392 (412)
Q Consensus 367 ~~~~~~---~a~~~~~~~a~~i~~~~~~~ 392 (412)
+..+.. .|+.+|+.+|.+|..+|.+.
T Consensus 609 ~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 609 AVHGADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 997654 79999999999999998764
No 68
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.95 E-value=8.6e-27 Score=212.44 Aligned_cols=264 Identities=21% Similarity=0.273 Sum_probs=195.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCC--CeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGL--PSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFI 94 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~--~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
...++|||+|++|..|+..+++.+. +++++-+...++ |...++ +.... .....+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-------ydr~~L---------s~~~~-------~~~~~~a 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-------YDRARL---------SKFLL-------TVGEGLA 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-------ccchhc---------cccee-------ecccccc
Confidence 4679999999999999999999875 777777665433 222111 11110 0011222
Q ss_pred HHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCC
Q 037065 95 AYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKS 173 (412)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~ 173 (412)
....++.+.+++++++++.|+.++...+. +.+.+ ++++|++++|||| +.+..+++||.+. ..+....+..+
T Consensus 131 ~r~~e~Yke~gIe~~~~t~v~~~D~~~K~----l~~~~Ge~~kys~LilATG--s~~~~l~~pG~~~--~nv~~ireied 202 (478)
T KOG1336|consen 131 KRTPEFYKEKGIELILGTSVVKADLASKT----LVLGNGETLKYSKLIIATG--SSAKTLDIPGVEL--KNVFYLREIED 202 (478)
T ss_pred ccChhhHhhcCceEEEcceeEEeeccccE----EEeCCCceeecceEEEeec--CccccCCCCCccc--cceeeeccHHH
Confidence 22234566679999999999999987754 77766 8999999999999 7899999998873 22333333222
Q ss_pred C-----CCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHH
Q 037065 174 G-----SEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLM 248 (412)
Q Consensus 174 ~-----~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (412)
. .....++|+++|+|..|+|+|..|...+.+||++++.+ +.+|+...
T Consensus 203 a~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~lf~--------------------------- 254 (478)
T KOG1336|consen 203 ANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPRLFG--------------------------- 254 (478)
T ss_pred HHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhhhhh---------------------------
Confidence 1 11237789999999999999999999999999999998 76665221
Q ss_pred HHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC------eEEecCCcEecccE
Q 037065 249 ANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN------GARFTDGQEKEIDA 320 (412)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~------~v~~~~g~~~~~D~ 320 (412)
+.+...+...+++.++++..+ +.++... .|.+.||+++++|+
T Consensus 255 ------------------------------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adl 304 (478)
T KOG1336|consen 255 ------------------------------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADL 304 (478)
T ss_pred ------------------------------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCe
Confidence 122233356667788998876 6666543 27889999999999
Q ss_pred EEEcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc
Q 037065 321 IILATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ 372 (412)
Q Consensus 321 vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~ 372 (412)
|++.+|.+|++ .+++. ++ .++.|++.++ ..+++++|||||+||++..+.
T Consensus 305 vv~GiG~~p~t-~~~~~-g~~~~~~G~i~V~-~~f~t~~~~VyAiGDva~fp~ 354 (478)
T KOG1336|consen 305 VVVGIGIKPNT-SFLEK-GILLDSKGGIKVD-EFFQTSVPNVYAIGDVATFPL 354 (478)
T ss_pred EEEeecccccc-ccccc-cceecccCCEeeh-hceeeccCCcccccceeeccc
Confidence 99999999998 66776 66 7899999999 578899999999999996544
No 69
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.95 E-value=2.6e-26 Score=202.20 Aligned_cols=301 Identities=17% Similarity=0.150 Sum_probs=195.1
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc-cCCCCCCCeeeecCCccccCCCC-CCCC----CCCCCCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL-WKHRTYDRLKLHLPKQFCELPLF-GFPE----NFPKYPT 89 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~ 89 (412)
..+||+|||+||+|..+|+++++.|++..++|++..+||+ .+..+.|+..+...+.+|..... .+.. ..+....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 3699999999999999999999999999999999999984 45566666544333333332211 1100 0011123
Q ss_pred HHHHHHHHH-----------HHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc---eEEEeCEEEEeeCCCC-CCCCCC
Q 037065 90 KRQFIAYIE-----------SYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD---SEYISKWLVVATGENA-EPVFPD 154 (412)
Q Consensus 90 ~~~~~~~~~-----------~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~d~vIlAtG~~~-~p~~p~ 154 (412)
...+.+... ...++.+++...+. -.-+ ++ ..+.+...+ ..++++++|+||| + .+.+|
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~-gsf~--~p--~~V~v~k~dg~~~ii~aKnIiiATG--SeV~~~P- 189 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGF-GSFL--DP--NKVSVKKIDGEDQIIKAKNIIIATG--SEVTPFP- 189 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeee-Eeec--CC--ceEEEeccCCCceEEeeeeEEEEeC--CccCCCC-
Confidence 333333333 33334444432221 0011 11 223333333 7899999999999 5 44444
Q ss_pred CCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHH
Q 037065 155 VVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLR 234 (412)
Q Consensus 155 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 234 (412)
|..- ....+.+++-.-....-+++++|+|+|.+|+|+..-..++|++||++.-.+ .+.+.-+. +.+..+.
T Consensus 190 --GI~I-DekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~-~i~~~mD~-----Eisk~~q- 259 (506)
T KOG1335|consen 190 --GITI-DEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD-QIGGVMDG-----EISKAFQ- 259 (506)
T ss_pred --CeEe-cCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehh-hhccccCH-----HHHHHHH-
Confidence 4322 123444454454556679999999999999999999999999999999877 55444332 3333332
Q ss_pred hcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC---e--
Q 037065 235 WFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN---G-- 307 (412)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~---~-- 307 (412)
+.++..+++.+.+ |...+.+ .
T Consensus 260 ----------------------------------------------------r~L~kQgikF~l~tkv~~a~~~~dg~v~ 287 (506)
T KOG1335|consen 260 ----------------------------------------------------RVLQKQGIKFKLGTKVTSATRNGDGPVE 287 (506)
T ss_pred ----------------------------------------------------HHHHhcCceeEeccEEEEeeccCCCceE
Confidence 3334445555544 4444432 2
Q ss_pred EEe---cCC--cEecccEEEEcCCCCCCCCCc-cccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhh
Q 037065 308 ARF---TDG--QEKEIDAIILATGYKSNVPTW-LKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALD 377 (412)
Q Consensus 308 v~~---~~g--~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~ 377 (412)
|.+ .++ ++++||++++|+|.+|-+..+ |++.|+ .|++|++.++ ...+|.+|+||++||+..+++ -|..|
T Consensus 288 i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~-~~f~t~vP~i~~IGDv~~gpMLAhkAeee 366 (506)
T KOG1335|consen 288 IEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVN-TRFQTKVPHIYAIGDVTLGPMLAHKAEEE 366 (506)
T ss_pred EEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecc-ccccccCCceEEecccCCcchhhhhhhhh
Confidence 333 233 378999999999999998777 888888 8899999988 466899999999999999888 44555
Q ss_pred HHHHHHHHHH
Q 037065 378 ADKIAQDISE 387 (412)
Q Consensus 378 ~~~~a~~i~~ 387 (412)
|..+.+.|..
T Consensus 367 gI~~VE~i~g 376 (506)
T KOG1335|consen 367 GIAAVEGIAG 376 (506)
T ss_pred chhheeeecc
Confidence 5555554443
No 70
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.94 E-value=1.4e-26 Score=220.48 Aligned_cols=285 Identities=19% Similarity=0.178 Sum_probs=210.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHc---CCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQ---GLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQF 93 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
..+++|||.|++|..+...+++. -++|++|...+... |.++.+.. ...+.-+.+++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls~--------------vl~~~~~~edi 61 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLSS--------------VLAGEKTAEDI 61 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeecc--------------ccCCCccHHHH
Confidence 35799999999999999999983 46899999887643 55544332 11122344555
Q ss_pred HHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCC
Q 037065 94 IAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYK 172 (412)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~ 172 (412)
.-.-..+.++++++++.+.+|+.|+...+. |.++. .++.||.||+||| |.|+++++||...+. ++.+..+.
T Consensus 62 ~l~~~dwy~~~~i~L~~~~~v~~idr~~k~----V~t~~g~~~~YDkLilATG--S~pfi~PiPG~~~~~--v~~~R~i~ 133 (793)
T COG1251 62 SLNRNDWYEENGITLYTGEKVIQIDRANKV----VTTDAGRTVSYDKLIIATG--SYPFILPIPGSDLPG--VFVYRTID 133 (793)
T ss_pred hccchhhHHHcCcEEEcCCeeEEeccCcce----EEccCCcEeecceeEEecC--ccccccCCCCCCCCC--eeEEecHH
Confidence 555567788889999999999999987754 66666 7899999999999 999999999987632 33333332
Q ss_pred CC-----CCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHH
Q 037065 173 SG-----SEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLL 247 (412)
Q Consensus 173 ~~-----~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (412)
+. .....++.+|||+|..|+|+|..|.+.|.+++|++-.+ +++.+..+ .
T Consensus 134 D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~lMerQLD-----~-------------------- 187 (793)
T COG1251 134 DVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-TLMERQLD-----R-------------------- 187 (793)
T ss_pred HHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc-hHHHHhhh-----h--------------------
Confidence 21 12235568999999999999999999999999999888 55544433 1
Q ss_pred HHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEe----CCeEEecCCcEecccEE
Q 037065 248 MANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEIT----KNGARFTDGQEKEIDAI 321 (412)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~----~~~v~~~~g~~~~~D~v 321 (412)
.....+...+++.+++++.+ .+++. ..++.++||+.+++|.|
T Consensus 188 --------------------------------~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~V 235 (793)
T COG1251 188 --------------------------------TAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLV 235 (793)
T ss_pred --------------------------------HHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeE
Confidence 01111233444556666554 22222 24689999999999999
Q ss_pred EEcCCCCCCCCCccccCccCCCCCCCCCCCCCCCCCCCCeEEEeeec-------CccccchhhHHHHHHHHHHhhcc
Q 037065 322 ILATGYKSNVPTWLKECDFFTKDGMPKTPFPNGWKGENGLYTVGFTR-------RGLQGTALDADKIAQDISEQWRK 391 (412)
Q Consensus 322 i~atG~~p~~~~~l~~~~~~~~~G~~~~~~~~~~~~~~~iya~Gd~~-------~~~~~a~~~~~~~a~~i~~~~~~ 391 (412)
++|+|++||. ++....|+..++|.++++ +++|+.|+|||+|+|+ ..+..+..|++.+|+++.....+
T Consensus 236 V~a~GIrPn~-ela~~aGlavnrGIvvnd--~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~ 309 (793)
T COG1251 236 VMAVGIRPND-ELAKEAGLAVNRGIVVND--YMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAE 309 (793)
T ss_pred EEeccccccc-HhHHhcCcCcCCCeeecc--cccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCccc
Confidence 9999999998 788888994445777776 7899999999999999 23447888999999998876543
No 71
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.94 E-value=1.2e-25 Score=218.01 Aligned_cols=303 Identities=19% Similarity=0.209 Sum_probs=181.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||+|++|+++|..|++.|++|+|+|+.+.+||.... .++.+ ....++...
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~---------------gip~~---------~~~~~~~~~ 198 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY---------------GIPNM---------KLDKAIVDR 198 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec---------------cCCCc---------cCCHHHHHH
Confidence 479999999999999999999999999999999887764322 11111 112234444
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCC-----
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKY----- 171 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~----- 171 (412)
..+.+++.+++++.++.|. .+ +..+.....||.||+|||+. .|..+.++|.+. .+ +....++
T Consensus 199 ~~~~~~~~Gv~~~~~~~v~-~~---------~~~~~~~~~~d~VilAtGa~-~~~~l~i~G~~~-~g-V~~~~~~l~~~~ 265 (485)
T TIGR01317 199 RIDLLSAEGIDFVTNTEIG-VD---------ISADELKEQFDAVVLAGGAT-KPRDLPIPGREL-KG-IHYAMEFLPSAT 265 (485)
T ss_pred HHHHHHhCCCEEECCCEeC-Cc---------cCHHHHHhhCCEEEEccCCC-CCCcCCCCCcCC-CC-cEeHHHHHHHHh
Confidence 4556677899998887663 11 11111235799999999942 367777887643 11 1111000
Q ss_pred ---C-------CCCCCCCCeEEEEcCCCCHHHHHHHHhhcCC-ccEEEEeCCCccccccccCCChhhHHHHHHHhcchH-
Q 037065 172 ---K-------SGSEFKNQKVLVIGCGNSGMEVSLDLCRHNA-IPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLR- 239 (412)
Q Consensus 172 ---~-------~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 239 (412)
. ......+++|+|||+|.+|+|.|..+.+++. +|+++.+.+ +.+..... ...+|..
T Consensus 266 ~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~-~~~~~~~~-----------~~~~~~~~ 333 (485)
T TIGR01317 266 KALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP-KPPEARAK-----------DNPWPEWP 333 (485)
T ss_pred hhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC-CChhhccc-----------ccCCCccc
Confidence 0 0112468999999999999999988888874 799998776 22211100 0000000
Q ss_pred --H-HHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhcc---CCEEEEcCceEE----eCCe--
Q 037065 240 --L-VDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKS---GKIKVVGGVKEI----TKNG-- 307 (412)
Q Consensus 240 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~v~~~v~~i----~~~~-- 307 (412)
. .....+. .....|+.. ...... ...+.. +.+.-+. +.++ ++++
T Consensus 334 ~~~e~~~a~~e-------~~~~~gv~~---------------~~~~~~-~~~i~~~~~g~v~~v~-~~~~~~~~~~~Gr~ 389 (485)
T TIGR01317 334 RVYRVDYAHEE-------AAAHYGRDP---------------REYSIL-TKEFIGDDEGKVTALR-TVRVEWKKSQDGKW 389 (485)
T ss_pred hhhhhHHHHHh-------hhhhcCccc---------------eEEecC-cEEEEEcCCCeEEEEE-EEEEEeccCCCCCc
Confidence 0 0000000 000011100 000000 011100 0111000 0000 1111
Q ss_pred -EEecCC--cEecccEEEEcCCCC-CCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHH
Q 037065 308 -ARFTDG--QEKEIDAIILATGYK-SNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDAD 379 (412)
Q Consensus 308 -v~~~~g--~~~~~D~vi~atG~~-p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~ 379 (412)
.....| .++++|.||+|+|+. |+. .+++..++ .+++|++.++..+++|+.|+|||+||++.+.. .|+.+|+
T Consensus 390 ~p~~~~g~~~~i~~D~Vi~AiG~~~p~~-~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~ 468 (485)
T TIGR01317 390 QFVEIPGSEEVFEADLVLLAMGFVGPEQ-ILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGR 468 (485)
T ss_pred cceecCCceEEEECCEEEEccCcCCCcc-ccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHH
Confidence 111112 368999999999997 776 57888888 67789886554678899999999999987543 7999999
Q ss_pred HHHHHHHHhhcccc
Q 037065 380 KIAQDISEQWRKIK 393 (412)
Q Consensus 380 ~~a~~i~~~~~~~~ 393 (412)
.+|.+|.++|.+..
T Consensus 469 ~AA~~i~~~L~g~~ 482 (485)
T TIGR01317 469 KAAAAVDRYLMGSS 482 (485)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999997753
No 72
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.94 E-value=3.9e-26 Score=219.90 Aligned_cols=270 Identities=18% Similarity=0.240 Sum_probs=185.3
Q ss_pred HHHHHHHHc--CCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCC-CCHHHHHHH-HHHHHHHcCC
Q 037065 31 AVSACLSQQ--GLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKY-PTKRQFIAY-IESYASHFKI 106 (412)
Q Consensus 31 ~~A~~l~~~--g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~ 106 (412)
++|..|++. +.+|+|||+++.+... .+ .. +....+. ....++..+ .+++..++++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~-------~~------------~l--~~~~~g~~~~~~~~~~~~~~~~~~~~gv 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFA-------NC------------GL--PYVIGGVIDDRNKLLAYTPEVFIKKRGI 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEE-------cC------------CC--CeEeccccCCHHHcccCCHHHHHHhcCC
Confidence 478888886 4789999998854210 00 00 0000111 112233333 2445577799
Q ss_pred cccccceEEEEEEcCCCCcEEEEEcc--eEEE--eCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCCC-------C
Q 037065 107 QPKFKQAVQTALFDHASGFWRVQTQD--SEYI--SKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSG-------S 175 (412)
Q Consensus 107 ~~~~~~~v~~i~~~~~~~~~~v~~~~--~~~~--~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~-------~ 175 (412)
+++.+++|+.++..+ ..+.+...+ .++. ||+||+||| ++|..|.++|.+. ..++......+. .
T Consensus 60 ~~~~~~~V~~id~~~--~~v~~~~~~~~~~~~~~yd~lIiATG--~~p~~~~i~G~~~--~~v~~~~~~~~~~~~~~~l~ 133 (427)
T TIGR03385 60 DVKTNHEVIEVNDER--QTVVVRNNKTNETYEESYDYLILSPG--ASPIVPNIEGINL--DIVFTLRNLEDTDAIKQYID 133 (427)
T ss_pred eEEecCEEEEEECCC--CEEEEEECCCCCEEecCCCEEEECCC--CCCCCCCCCCcCC--CCEEEECCHHHHHHHHHHHh
Confidence 988899999998755 454454332 4677 999999999 7888888888652 112222211110 1
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccc-cccccCCChhhHHHHHHHhcchHHHHHHHHHHHHHhhc
Q 037065 176 EFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVL-PREIFGFSTFGIAMALLRWFPLRLVDKILLLMANITLG 254 (412)
Q Consensus 176 ~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (412)
...+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++ +.... +.
T Consensus 134 ~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~~~~~~~~-----~~-------------------------- 181 (427)
T TIGR03385 134 KNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE-RILNKLFDE-----EM-------------------------- 181 (427)
T ss_pred hcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccCccccCH-----HH--------------------------
Confidence 1356899999999999999999999999999999887 321 11110 00
Q ss_pred CccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCCe--EEecCCcEecccEEEEcCCCCCC
Q 037065 255 NTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKNG--ARFTDGQEKEIDAIILATGYKSN 330 (412)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~~--v~~~~g~~~~~D~vi~atG~~p~ 330 (412)
.....+.+++.+|+++.+ |.+++.++ +.+.+|+++++|.+++|+|.+|+
T Consensus 182 ---------------------------~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 182 ---------------------------NQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred ---------------------------HHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence 111234455668888865 77887654 36678889999999999999999
Q ss_pred CCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCc-------------cccchhhHHHHHHHHHHh
Q 037065 331 VPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRG-------------LQGTALDADKIAQDISEQ 388 (412)
Q Consensus 331 ~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~-------------~~~a~~~~~~~a~~i~~~ 388 (412)
. .+++..++ .+++|++.+|. +++|+.|+|||+|||+.. ...|..||+.+|+||.+.
T Consensus 235 ~-~~l~~~gl~~~~~G~i~vd~-~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 235 S-ELAKDSGLKLGETGAIWVNE-KFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred H-HHHHhcCcccCCCCCEEECC-CcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 8 57888888 67889999884 567899999999999842 227889999999999753
No 73
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.94 E-value=6.4e-26 Score=202.92 Aligned_cols=291 Identities=16% Similarity=0.146 Sum_probs=200.9
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFI 94 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
.+.++|+|+|+|++|++++..|-..-++|++|++++.+--+|. .|....+......+.
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL----------------------LpS~~vGTve~rSIv 110 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL----------------------LPSTTVGTVELRSIV 110 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeec----------------------cCCccccceeehhhh
Confidence 4578999999999999999999888899999999875321111 122223445667788
Q ss_pred HHHHHHHHHcCCcc-cccceEEEEEEcCCCCcEEEE--Ecc-----eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccc--
Q 037065 95 AYIESYASHFKIQP-KFKQAVQTALFDHASGFWRVQ--TQD-----SEYISKWLVVATGENAEPVFPDVVGLDKFNGH-- 164 (412)
Q Consensus 95 ~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~v~--~~~-----~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~-- 164 (412)
+.+...+++....+ .+..+.+.++++.+ ...+. +.+ ..+.|||||+|+| ..++.+.+||..+....
T Consensus 111 EPIr~i~r~k~~~~~y~eAec~~iDp~~k--~V~~~s~t~~~~~~e~~i~YDyLViA~G--A~~~TFgipGV~e~~~FLK 186 (491)
T KOG2495|consen 111 EPIRAIARKKNGEVKYLEAECTKIDPDNK--KVHCRSLTADSSDKEFVIGYDYLVIAVG--AEPNTFGIPGVEENAHFLK 186 (491)
T ss_pred hhHHHHhhccCCCceEEecccEeeccccc--EEEEeeeccCCCcceeeecccEEEEecc--CCCCCCCCCchhhchhhhh
Confidence 88888887764343 45667778887663 32222 111 5789999999999 88999999987653210
Q ss_pred -----------eeecc------CCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhc--------------CCccEEEEeCCC
Q 037065 165 -----------VLHTS------KYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRH--------------NAIPHMVARNSV 213 (412)
Q Consensus 165 -----------~~~~~------~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~--------------g~~v~~~~r~~~ 213 (412)
+++.. ...++...+--+++|||||++|+|+|.+|++. ..+|+++...+
T Consensus 187 Ev~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d- 265 (491)
T KOG2495|consen 187 EVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD- 265 (491)
T ss_pred hhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch-
Confidence 01110 01111122334799999999999999999874 12677777777
Q ss_pred ccccccccCCChhhHHHHHHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCC
Q 037065 214 HVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGK 293 (412)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (412)
.+|++.+. .+.+.. .+.+.+.+
T Consensus 266 ~iL~mFdk-----------------rl~~ya-----------------------------------------e~~f~~~~ 287 (491)
T KOG2495|consen 266 HILNMFDK-----------------RLVEYA-----------------------------------------ENQFVRDG 287 (491)
T ss_pred hHHHHHHH-----------------HHHHHH-----------------------------------------HHHhhhcc
Confidence 45444433 222111 35556778
Q ss_pred EEEEcC--ceEEeCCeEEecCC----cEecccEEEEcCCCCCCCCCccccCcc-CCCCC--CCCCCCCCCCCCCCCeEEE
Q 037065 294 IKVVGG--VKEITKNGARFTDG----QEKEIDAIILATGYKSNVPTWLKECDF-FTKDG--MPKTPFPNGWKGENGLYTV 364 (412)
Q Consensus 294 v~v~~~--v~~i~~~~v~~~~g----~~~~~D~vi~atG~~p~~~~~l~~~~~-~~~~G--~~~~~~~~~~~~~~~iya~ 364 (412)
|++..+ |..++++.++..++ +++++-+++|+||..|.+ +.+.+-. .++.| .+.+|+-++..+.+||||+
T Consensus 288 I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp--~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAi 365 (491)
T KOG2495|consen 288 IDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP--VIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAI 365 (491)
T ss_pred ceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch--hhhhHhhcCCccCceeeeeeceeeccCcCceEEe
Confidence 998887 88888888777655 589999999999999984 3444422 34444 6677766777899999999
Q ss_pred eeecCc------cccchhhHHHHHHHHHHhhccc
Q 037065 365 GFTRRG------LQGTALDADKIAQDISEQWRKI 392 (412)
Q Consensus 365 Gd~~~~------~~~a~~~~~~~a~~i~~~~~~~ 392 (412)
|||+.. ...|..||.++|+++-......
T Consensus 366 GDca~~~~~~~tAQVA~QqG~yLAk~fn~m~k~~ 399 (491)
T KOG2495|consen 366 GDCADQRGLKPTAQVAEQQGAYLAKNFNKMGKGG 399 (491)
T ss_pred ccccccccCccHHHHHHHHHHHHHHHHHHHhccc
Confidence 999922 2289999999999987765544
No 74
>PRK13984 putative oxidoreductase; Provisional
Probab=99.94 E-value=5.4e-26 Score=227.52 Aligned_cols=275 Identities=16% Similarity=0.181 Sum_probs=173.2
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
..++|+|||+|++|+++|..|++.|++|+|+|+.+..||.+... ++.. ....++..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i~~~---------~~~~~~~~ 337 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------IPSY---------RLPDEALD 337 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------CCcc---------cCCHHHHH
Confidence 46789999999999999999999999999999998887754321 1111 11133444
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCC--
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKS-- 173 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~-- 173 (412)
...+.+++++++++.++.|.. + +..+.....||+||+|||+ ..+..+.++|.+.. .+....++..
T Consensus 338 ~~~~~~~~~gv~~~~~~~v~~-~---------~~~~~~~~~yD~vilAtGa-~~~r~l~i~G~~~~--gv~~a~~~l~~~ 404 (604)
T PRK13984 338 KDIAFIEALGVKIHLNTRVGK-D---------IPLEELREKHDAVFLSTGF-TLGRSTRIPGTDHP--DVIQALPLLREI 404 (604)
T ss_pred HHHHHHHHCCcEEECCCEeCC-c---------CCHHHHHhcCCEEEEEcCc-CCCccCCCCCcCCc--CeEeHHHHHHHH
Confidence 444566777999888876621 1 1111223579999999995 23566777776431 1222111110
Q ss_pred --------CCCCCCCeEEEEcCCCCHHHHHHHHhhcCC------ccEEEEeC-CCccccccccCCChhhHHHHHHHhcch
Q 037065 174 --------GSEFKNQKVLVIGCGNSGMEVSLDLCRHNA------IPHMVARN-SVHVLPREIFGFSTFGIAMALLRWFPL 238 (412)
Q Consensus 174 --------~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~------~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (412)
.....+++|+|||||.+|+|+|..+.+++. +|+++... ....+|.... +
T Consensus 405 ~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~-----e----------- 468 (604)
T PRK13984 405 RDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADME-----E----------- 468 (604)
T ss_pred HhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHH-----H-----------
Confidence 011246899999999999999999998753 67776432 2111111100 0
Q ss_pred HHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEe------------
Q 037065 239 RLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEIT------------ 304 (412)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~------------ 304 (412)
. ..+...+++++.. +.++.
T Consensus 469 --~---------------------------------------------~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~ 501 (604)
T PRK13984 469 --I---------------------------------------------EEGLEEGVVIYPGWGPMEVVIENDKVKGVKFK 501 (604)
T ss_pred --H---------------------------------------------HHHHHcCCEEEeCCCCEEEEccCCEEEEEEEE
Confidence 0 0000112222211 11111
Q ss_pred -------CCe---EE--ecCCcEecccEEEEcCCCCCCCCCccccC--ccCCCCCCCCCCCCCCCCCCCCeEEEeeecCc
Q 037065 305 -------KNG---AR--FTDGQEKEIDAIILATGYKSNVPTWLKEC--DFFTKDGMPKTPFPNGWKGENGLYTVGFTRRG 370 (412)
Q Consensus 305 -------~~~---v~--~~~g~~~~~D~vi~atG~~p~~~~~l~~~--~~~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~ 370 (412)
.++ .. ..++.++++|.||+|+|++||...+.... ++..+.|.+.+| ..++|++|+|||+||++..
T Consensus 502 ~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd-~~~~Ts~~gVfAaGD~~~~ 580 (604)
T PRK13984 502 KCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTN-EYGQTSIPWLFAGGDIVHG 580 (604)
T ss_pred EEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeC-CCCccCCCCEEEecCcCCc
Confidence 111 00 11234799999999999999974332222 343357888888 4678999999999999966
Q ss_pred cc--cchhhHHHHHHHHHHhhcc
Q 037065 371 LQ--GTALDADKIAQDISEQWRK 391 (412)
Q Consensus 371 ~~--~a~~~~~~~a~~i~~~~~~ 391 (412)
.. .|+.+|+.+|.+|.++|.+
T Consensus 581 ~~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 581 PDIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Confidence 44 8899999999999998864
No 75
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.94 E-value=9.8e-26 Score=223.49 Aligned_cols=275 Identities=19% Similarity=0.220 Sum_probs=181.7
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||+||+||++|..|++.|++|+|+|+.+.+||.+.. .++.+. .. .++.+.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~~~--------~~-~~~~~~ 192 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRY---------------GIPAYR--------LP-REVLDA 192 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee---------------cCCCcc--------CC-HHHHHH
Confidence 578999999999999999999999999999999998886543 122221 11 233343
Q ss_pred HHHHHHHcCCcccccceE-EEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCC----
Q 037065 97 IESYASHFKIQPKFKQAV-QTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKY---- 171 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~---- 171 (412)
-.+.+.++++++..++.+ .++... .....||+||+|||.. .+....+++... .+ .+....+
T Consensus 193 ~l~~~~~~Gv~~~~~~~~~~~~~~~-----------~~~~~~D~Vi~AtG~~-~~~~~~i~g~~~-~g-v~~~~~~l~~~ 258 (564)
T PRK12771 193 EIQRILDLGVEVRLGVRVGEDITLE-----------QLEGEFDAVFVAIGAQ-LGKRLPIPGEDA-AG-VLDAVDFLRAV 258 (564)
T ss_pred HHHHHHHCCCEEEeCCEECCcCCHH-----------HHHhhCCEEEEeeCCC-CCCcCCCCCCcc-CC-cEEHHHHHHHh
Confidence 344566778887777654 222111 1123589999999952 223345555432 11 1111111
Q ss_pred -CCCCCCCCCeEEEEcCCCCHHHHHHHHhhcC-CccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHH
Q 037065 172 -KSGSEFKNQKVLVIGCGNSGMEVSLDLCRHN-AIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMA 249 (412)
Q Consensus 172 -~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (412)
.......+++++|+|+|.+|+|.+..+.+++ .+|++++|++...++.... +
T Consensus 259 ~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~-----~---------------------- 311 (564)
T PRK12771 259 GEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDE-----E---------------------- 311 (564)
T ss_pred hccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHH-----H----------------------
Confidence 1113345889999999999999999899888 6799999887322221110 0
Q ss_pred HHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCCe-----E---Ee------c--
Q 037065 250 NITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKNG-----A---RF------T-- 311 (412)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~~-----v---~~------~-- 311 (412)
++.....+++++.. +.++..+. + .+ .
T Consensus 312 ------------------------------------~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g 355 (564)
T PRK12771 312 ------------------------------------IEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDG 355 (564)
T ss_pred ------------------------------------HHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCC
Confidence 11112233444332 33332210 0 01 1
Q ss_pred -----CC--cEecccEEEEcCCCCCCCCCcccc-CccCCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHH
Q 037065 312 -----DG--QEKEIDAIILATGYKSNVPTWLKE-CDFFTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADK 380 (412)
Q Consensus 312 -----~g--~~~~~D~vi~atG~~p~~~~~l~~-~~~~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~ 380 (412)
+| .++++|.||+|+|+.|+. .+++. .++.+++|++.+|..+++|+.|+||++||+..++. .|+.+|+.
T Consensus 356 ~~~~~~g~~~~i~~D~Vi~A~G~~p~~-~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~ 434 (564)
T PRK12771 356 RPSPVTGEEETLEADLVVLAIGQDIDS-AGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKK 434 (564)
T ss_pred CeeecCCceEEEECCEEEECcCCCCch-hhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHH
Confidence 22 378999999999999987 56665 46667789999986678899999999999987543 89999999
Q ss_pred HHHHHHHhhcccc
Q 037065 381 IAQDISEQWRKIK 393 (412)
Q Consensus 381 ~a~~i~~~~~~~~ 393 (412)
+|.+|.+.+.+..
T Consensus 435 aA~~i~~~L~g~~ 447 (564)
T PRK12771 435 AARNIDAFLGGEP 447 (564)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999998753
No 76
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.8e-25 Score=193.22 Aligned_cols=287 Identities=17% Similarity=0.250 Sum_probs=207.5
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFI 94 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
...|||+||||||+|-++|+..+|+|.+.-++-. .+||.-... +.+.++. . -.+....++.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT-------------~~IENfI---s-v~~teGpkl~ 269 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDT-------------MGIENFI---S-VPETEGPKLA 269 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccc-------------cchhhee---c-cccccchHHH
Confidence 3469999999999999999999999997765543 234422110 1111111 0 1124567888
Q ss_pred HHHHHHHHHcCCcccccceEEEEEEcCCC-CcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCC
Q 037065 95 AYIESYASHFKIQPKFKQAVQTALFDHAS-GFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYK 172 (412)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~ 172 (412)
..+++..+++.+++.-..+.+++.+.... +.++|++.+ -.++++.+|+|||+.|+ --.+||.++|..+.+.+|..|
T Consensus 270 ~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWR--n~nvPGE~e~rnKGVayCPHC 347 (520)
T COG3634 270 AALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWR--NMNVPGEDEYRNKGVAYCPHC 347 (520)
T ss_pred HHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchh--cCCCCchHHHhhCCeeeCCCC
Confidence 99999999999998777778888875432 467788888 67899999999996544 446789999888999999999
Q ss_pred CCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHHHHh
Q 037065 173 SGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMANIT 252 (412)
Q Consensus 173 ~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
+...+.+|+|+|||||.||+|.|..|+-...+||++.=.+. + . .+..
T Consensus 348 DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e-L-----k-------------------AD~V-------- 394 (520)
T COG3634 348 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE-L-----K-------------------ADAV-------- 394 (520)
T ss_pred CCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchh-h-----h-------------------hHHH--------
Confidence 99999999999999999999999999999889998864430 0 0 0000
Q ss_pred hcCccccCCCCCCCCCccccccCCCcccccchhhhhhc-cCCEEEEcC--ceEEeCC-----eEEe---cCCc--Eeccc
Q 037065 253 LGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIK-SGKIKVVGG--VKEITKN-----GARF---TDGQ--EKEID 319 (412)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~--v~~i~~~-----~v~~---~~g~--~~~~D 319 (412)
+.+.+. -.|+++.++ -+++..+ +++. .+|+ .++-+
T Consensus 395 --------------------------------Lq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~Le 442 (520)
T COG3634 395 --------------------------------LQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELE 442 (520)
T ss_pred --------------------------------HHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEee
Confidence 011111 247777776 4556554 2443 2344 35667
Q ss_pred EEEEcCCCCCCCCCccccCccCCCCCCCCCCCCCCCCCCCCeEEEeeecCccc----cchhhHHHHHHHHHHhh
Q 037065 320 AIILATGYKSNVPTWLKECDFFTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ----GTALDADKIAQDISEQW 389 (412)
Q Consensus 320 ~vi~atG~~p~~~~~l~~~~~~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~----~a~~~~~~~a~~i~~~~ 389 (412)
-|++-+|..||+ +||+..--+++.|-+++| ....|+.|+|||+|||+..+. .++..|..++-..-.++
T Consensus 443 GvFVqIGL~PNT-~WLkg~vel~~rGEIivD-~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFDyL 514 (520)
T COG3634 443 GVFVQIGLLPNT-EWLKGAVELNRRGEIIVD-ARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFDYL 514 (520)
T ss_pred eeEEEEecccCh-hHhhchhhcCcCccEEEe-cCCCcCCCceeecCcccCCccceEEEEecCcchhhhhhhhhh
Confidence 899999999999 899998448899999999 467899999999999996644 55555555554444333
No 77
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.93 E-value=3.4e-24 Score=204.70 Aligned_cols=314 Identities=18% Similarity=0.208 Sum_probs=179.3
Q ss_pred ccCeEEECCChHHHHHHHHHHH--cCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQ--QGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFI 94 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~--~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
.++|+|||+|||||++|..|++ .|++|+|||+.+..||..+... .+.++....+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv-----------------------aP~~~~~k~v~ 82 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV-----------------------APDHPETKNVT 82 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc-----------------------CCCcchhHHHH
Confidence 5789999999999999999997 6999999999998887654321 01233445566
Q ss_pred HHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCC---
Q 037065 95 AYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKY--- 171 (412)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~--- 171 (412)
..+.++....+++++.+..+- . . +..++-...||+||+|||+. .+..+.+||.+. . .++...++
T Consensus 83 ~~~~~~~~~~~v~~~~nv~vg-----~-d----vtl~~L~~~yDaVIlAtGa~-~~~~l~IpG~d~-~-gV~~a~~fl~~ 149 (491)
T PLN02852 83 NQFSRVATDDRVSFFGNVTLG-----R-D----VSLSELRDLYHVVVLAYGAE-SDRRLGIPGEDL-P-GVLSAREFVWW 149 (491)
T ss_pred HHHHHHHHHCCeEEEcCEEEC-----c-c----ccHHHHhhhCCEEEEecCCC-CCCCCCCCCCCC-C-CeEEHHHHHHH
Confidence 666777777777776664441 1 0 33333234799999999942 235567777653 1 12221111
Q ss_pred -------CC--CCCCCCCeEEEEcCCCCHHHHHHHHhhc--------------------C-CccEEEEeCCCcccccccc
Q 037065 172 -------KS--GSEFKNQKVLVIGCGNSGMEVSLDLCRH--------------------N-AIPHMVARNSVHVLPREIF 221 (412)
Q Consensus 172 -------~~--~~~~~~~~v~vvG~G~~~~e~a~~l~~~--------------------g-~~v~~~~r~~~~~~~~~~~ 221 (412)
+. .....+++|+|||+|.+|+|+|..|.+. + .+|+++.||...-.+..
T Consensus 150 ~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft-- 227 (491)
T PLN02852 150 YNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACT-- 227 (491)
T ss_pred hhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCC--
Confidence 00 0123578999999999999999998765 4 46999999983221111
Q ss_pred CCChhhHHHHHHHhcchHHHHHHHHHHHHHhh--cCccccCCCCCCCCCccccccCCCcccccchhhhhh---------c
Q 037065 222 GFSTFGIAMALLRWFPLRLVDKILLLMANITL--GNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQI---------K 290 (412)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 290 (412)
..++.... . ++. +...... ..... ...+.....++. +. ..+.+.+.. .
T Consensus 228 ---~~Elrel~-~-l~~--~~~~~~~-~~~~~~~~~~~~~~~~r~~------------~r-~~~~l~~~a~~~~~~~~~~ 286 (491)
T PLN02852 228 ---AKELRELL-G-LKN--VRVRIKE-ADLTLSPEDEEELKASRPK------------RR-VYELLSKAAAAGKCAPSGG 286 (491)
T ss_pred ---HHHHHHHh-c-cCC--Cceeech-hhhccccchhhhhccchhh------------HH-HHHHHHHHHhhcccccCCC
Confidence 00111000 0 000 0000000 00000 000000000000 00 000000000 0
Q ss_pred cCCEEEEcC--ceEEeC-----C---eEEe-----------------cCCc--EecccEEEEcCCCC--CCCCCc-cc-c
Q 037065 291 SGKIKVVGG--VKEITK-----N---GARF-----------------TDGQ--EKEIDAIILATGYK--SNVPTW-LK-E 337 (412)
Q Consensus 291 ~~~v~v~~~--v~~i~~-----~---~v~~-----------------~~g~--~~~~D~vi~atG~~--p~~~~~-l~-~ 337 (412)
..++.++.. ..+|.. + ++.+ .+|+ .+++|.||.|+|++ |.. .+ +. .
T Consensus 287 ~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~-~l~f~~~ 365 (491)
T PLN02852 287 QRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVD-GLPFDHK 365 (491)
T ss_pred CceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCC-CCccccC
Confidence 012333221 222210 0 1111 1333 58999999999998 443 33 33 2
Q ss_pred Ccc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc----cchhhHHHHHHHHHHhhcc
Q 037065 338 CDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ----GTALDADKIAQDISEQWRK 391 (412)
Q Consensus 338 ~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~----~a~~~~~~~a~~i~~~~~~ 391 (412)
.++ .++.|++.++. ...|+.||+|++|||.+++. .++.+|+.+++.|..++..
T Consensus 366 ~gv~~n~~G~V~~d~-~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 366 RGVVPNVHGRVLSSA-SGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred cCeeECCCceEEeCC-CCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHHc
Confidence 355 67889998873 45789999999999997655 8899999999999999765
No 78
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.92 E-value=6.3e-24 Score=221.74 Aligned_cols=274 Identities=15% Similarity=0.181 Sum_probs=185.1
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
..+||+||||||+||++|..|++.|++|+|+|+.+.+||.+.... . .. .+ .+..++..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---~---------~~---------~g-~~~~~~~~ 219 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---E---------TI---------DG-KPAADWAA 219 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---c---------cc---------CC-ccHHHHHH
Confidence 368999999999999999999999999999999998888653310 0 00 01 22334433
Q ss_pred HHHHHHHHc-CCcccccceEEEEEEcCCCCcEEEE-------------Ecc--eEEEeCEEEEeeCCCCCCCCCCCCCCC
Q 037065 96 YIESYASHF-KIQPKFKQAVQTALFDHASGFWRVQ-------------TQD--SEYISKWLVVATGENAEPVFPDVVGLD 159 (412)
Q Consensus 96 ~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~-------------~~~--~~~~~d~vIlAtG~~~~p~~p~~~g~~ 159 (412)
.+.+.+... +++++.+++|..+..... ...+. ..+ ..+.+|.||+||| +.+..|.++|.+
T Consensus 220 ~~~~~l~~~~~v~v~~~t~V~~i~~~~~--v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATG--a~~r~~pipG~~ 295 (985)
T TIGR01372 220 ATVAELTAMPEVTLLPRTTAFGYYDHNT--VGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATG--AHERPLVFANND 295 (985)
T ss_pred HHHHHHhcCCCcEEEcCCEEEEEecCCe--EEEEEEeeeccccccCCccccceEEEEcCEEEEcCC--CCCcCCCCCCCC
Confidence 343334444 588888888887753210 00010 001 2689999999999 778888888865
Q ss_pred CCccceeecc---CCCC-CCCCCCCeEEEEcCCCCHHHHHHHHhhcCC-ccEEEEeCCCccccccccCCChhhHHHHHHH
Q 037065 160 KFNGHVLHTS---KYKS-GSEFKNQKVLVIGCGNSGMEVSLDLCRHNA-IPHMVARNSVHVLPREIFGFSTFGIAMALLR 234 (412)
Q Consensus 160 ~~~~~~~~~~---~~~~-~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 234 (412)
. ++ +.... .++. .....+++++|+|+|.+|+|+|..|.+.|. .|+++.+++ ...+
T Consensus 296 ~-pg-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~-~~~~----------------- 355 (985)
T TIGR01372 296 R-PG-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA-DVSP----------------- 355 (985)
T ss_pred C-CC-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc-chhH-----------------
Confidence 4 22 22111 1111 122357899999999999999999999995 467777655 1100
Q ss_pred hcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC----eE
Q 037065 235 WFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN----GA 308 (412)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~----~v 308 (412)
.+.+.+++.+|+++.+ |.++..+ +|
T Consensus 356 -------------------------------------------------~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V 386 (985)
T TIGR01372 356 -------------------------------------------------EARAEARELGIEVLTGHVVAATEGGKRVSGV 386 (985)
T ss_pred -------------------------------------------------HHHHHHHHcCCEEEcCCeEEEEecCCcEEEE
Confidence 0124455667888876 6676543 34
Q ss_pred Eec----CCcEecccEEEEcCCCCCCCCCccccCcc---CCCC--CCCCCCCCCCCCCCCCeEEEeeecCcc--ccchhh
Q 037065 309 RFT----DGQEKEIDAIILATGYKSNVPTWLKECDF---FTKD--GMPKTPFPNGWKGENGLYTVGFTRRGL--QGTALD 377 (412)
Q Consensus 309 ~~~----~g~~~~~D~vi~atG~~p~~~~~l~~~~~---~~~~--G~~~~~~~~~~~~~~~iya~Gd~~~~~--~~a~~~ 377 (412)
++. +++++++|.|++++|++||+ .++..++. .++. ++.. .++.|+||++||++... ..|..+
T Consensus 387 ~l~~~~g~~~~i~~D~V~va~G~~Pnt-~L~~~lg~~~~~~~~~~~~~~------~t~v~gVyaaGD~~g~~~~~~A~~e 459 (985)
T TIGR01372 387 AVARNGGAGQRLEADALAVSGGWTPVV-HLFSQRGGKLAWDAAIAAFLP------GDAVQGCILAGAANGLFGLAAALAD 459 (985)
T ss_pred EEEecCCceEEEECCEEEEcCCcCchh-HHHHhcCCCeeeccccCceec------CCCCCCeEEeeccCCccCHHHHHHH
Confidence 544 45689999999999999998 66666653 2221 2211 26689999999999554 479999
Q ss_pred HHHHHHHHHHhhcc
Q 037065 378 ADKIAQDISEQWRK 391 (412)
Q Consensus 378 ~~~~a~~i~~~~~~ 391 (412)
|+.+|..|+..+..
T Consensus 460 G~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 460 GAAAGAAAARAAGF 473 (985)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999888755
No 79
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.92 E-value=1.2e-25 Score=207.22 Aligned_cols=217 Identities=26% Similarity=0.403 Sum_probs=136.7
Q ss_pred ccCeEEECCChHHHHHHHHHHHcC-CCeEEEecCCCCCcccCCCC-CCCeeeecC--CccccC--CCCCCC---------
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQG-LPSLILERSDCLASLWKHRT-YDRLKLHLP--KQFCEL--PLFGFP--------- 81 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g-~~v~vie~~~~~g~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~--------- 81 (412)
.+|+++||.||++|++|+.|.+.+ .+++++|+++.. .|+.++ .++..+..+ ++.... |..+|.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 589999999999999999999986 899999998754 476543 333333222 111111 111110
Q ss_pred ------CCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCC--CcEEEEEc-----ceEEEeCEEEEeeCCCC
Q 037065 82 ------ENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHAS--GFWRVQTQ-----DSEYISKWLVVATGENA 148 (412)
Q Consensus 82 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~v~~~-----~~~~~~d~vIlAtG~~~ 148 (412)
.....+|++.++.+|++|.+++++..++++++|++|++.... ..|+|.+. .+++.++.||+|+| .
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G--~ 157 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATG--G 157 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE------
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcC--C
Confidence 001245899999999999999999779999999999998753 25899983 38999999999999 8
Q ss_pred CCCCCCCCCCCCCccceeeccCCCCCC--CCCCCeEEEEcCCCCHHHHHHHHhhcCC--ccEEEEeCCCccccccccCCC
Q 037065 149 EPVFPDVVGLDKFNGHVLHTSKYKSGS--EFKNQKVLVIGCGNSGMEVSLDLCRHNA--IPHMVARNSVHVLPREIFGFS 224 (412)
Q Consensus 149 ~p~~p~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~vvG~G~~~~e~a~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~ 224 (412)
.|.+|...........++|+.++.... ....++|+|||+|.||.|++..|.+.+. +|+|+.|++ .+.|.++.
T Consensus 158 ~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~-~~~~~d~s--- 233 (341)
T PF13434_consen 158 QPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP-GFFPMDDS--- 233 (341)
T ss_dssp EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS-S-EB-------
T ss_pred CCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC-ccCCCccc---
Confidence 999986532211124789998876543 5678899999999999999999999875 899999999 55555433
Q ss_pred hhhHHHHHHHhcchHHHHHHHH
Q 037065 225 TFGIAMALLRWFPLRLVDKILL 246 (412)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~ 246 (412)
.+..+++.++.++.+..
T Consensus 234 -----~f~ne~f~P~~v~~f~~ 250 (341)
T PF13434_consen 234 -----PFVNEIFSPEYVDYFYS 250 (341)
T ss_dssp -----CCHHGGGSHHHHHHHHT
T ss_pred -----cchhhhcCchhhhhhhc
Confidence 34455666665554443
No 80
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-23 Score=182.33 Aligned_cols=309 Identities=16% Similarity=0.176 Sum_probs=194.0
Q ss_pred ccccccCeEEECCChHHHHHHHHHHHcCCCeEEEecC--CCCCcccCC-------CCCCCeeeecCCccc------cCCC
Q 037065 13 KSVLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERS--DCLASLWKH-------RTYDRLKLHLPKQFC------ELPL 77 (412)
Q Consensus 13 ~~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~--~~~g~~~~~-------~~~~~~~~~~~~~~~------~~~~ 77 (412)
..+..||.+|||||.+||++|..++..|.+|.++|-- .-.|..|.- .+.+...+++.+-.- ..-+
T Consensus 15 ~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 15 FSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred cccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 3466899999999999999999999999999999943 224445543 233333333221110 1112
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHcC--Ccccc-cceEEEEEEcCC-CCcEEEEEcc-----eEEEeCEEEEeeCCCC
Q 037065 78 FGFPENFPKYPTKRQFIAYIESYASHFK--IQPKF-KQAVQTALFDHA-SGFWRVQTQD-----SEYISKWLVVATGENA 148 (412)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~v~~i~~~~~-~~~~~v~~~~-----~~~~~d~vIlAtG~~~ 148 (412)
+..++. ........+.+.+++..+..+ ..+.+ ..+|+.+..-+. .+.+++...+ ..+.++.+|+||| .
T Consensus 95 W~~~e~-~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG--~ 171 (503)
T KOG4716|consen 95 WNVDEQ-KIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATG--L 171 (503)
T ss_pred CCCccc-cccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEec--C
Confidence 222221 122334555666665554442 22211 223444432110 1222343332 5789999999999 9
Q ss_pred CCCCCCCCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhH
Q 037065 149 EPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGI 228 (412)
Q Consensus 149 ~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~ 228 (412)
+|+.|++||..++ .+.+.+. ......+.+.+|||+|..|+|+|..|+..|.+|++..|+- +|.-++. ++
T Consensus 172 RPrYp~IpG~~Ey---~ITSDDl-Fsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI--~LrGFDq-----dm 240 (503)
T KOG4716|consen 172 RPRYPDIPGAKEY---GITSDDL-FSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI--LLRGFDQ-----DM 240 (503)
T ss_pred CCCCCCCCCceee---eeccccc-ccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe--ecccccH-----HH
Confidence 9999999998763 4554443 3445567778999999999999999999999999999875 2222222 22
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC-----ceEE
Q 037065 229 AMALLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG-----VKEI 303 (412)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-----v~~i 303 (412)
+..+-..| +.. ++++... |+.+
T Consensus 241 ae~v~~~m--------------------~~~---------------------------------Gikf~~~~vp~~Veq~ 267 (503)
T KOG4716|consen 241 AELVAEHM--------------------EER---------------------------------GIKFLRKTVPERVEQI 267 (503)
T ss_pred HHHHHHHH--------------------HHh---------------------------------CCceeecccceeeeec
Confidence 22222222 222 3332211 3333
Q ss_pred eCCeEEe-------cCCcEecccEEEEcCCCCCCCCCc-cccCcc-CC-CCCCCCCCCCCCCCCCCCeEEEeeecCcc--
Q 037065 304 TKNGARF-------TDGQEKEIDAIILATGYKSNVPTW-LKECDF-FT-KDGMPKTPFPNGWKGENGLYTVGFTRRGL-- 371 (412)
Q Consensus 304 ~~~~v~~-------~~g~~~~~D~vi~atG~~p~~~~~-l~~~~~-~~-~~G~~~~~~~~~~~~~~~iya~Gd~~~~~-- 371 (412)
++..+.+ ..+-+-++|.|+||+|.++.+..+ |+..|. .| ..|.+.++ ...+|++|+|||+||.-..-
T Consensus 268 ~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~-~~e~t~vp~vyAvGDIl~~kpE 346 (503)
T KOG4716|consen 268 DDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVD-DEEATNVPYVYAVGDILEDKPE 346 (503)
T ss_pred cCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccC-hHHhcCCCceEEecceecCCcc
Confidence 3332111 122256899999999999998665 777788 44 57888877 46789999999999988442
Q ss_pred --ccchhhHHHHHHHHHHhh
Q 037065 372 --QGTALDADKIAQDISEQW 389 (412)
Q Consensus 372 --~~a~~~~~~~a~~i~~~~ 389 (412)
..|+..|+.+|++|...-
T Consensus 347 LTPvAIqsGrlLa~Rlf~gs 366 (503)
T KOG4716|consen 347 LTPVAIQSGRLLARRLFAGS 366 (503)
T ss_pred cchhhhhhchHHHHHHhcCc
Confidence 288998999988886543
No 81
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=7e-23 Score=183.26 Aligned_cols=327 Identities=24% Similarity=0.297 Sum_probs=210.1
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcC-CCeEEEecCCCCCcccCCCCC-CCeeee-----------cCCccccCCCC---
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQG-LPSLILERSDCLASLWKHRTY-DRLKLH-----------LPKQFCELPLF--- 78 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g-~~v~vie~~~~~g~~~~~~~~-~~~~~~-----------~~~~~~~~~~~--- 78 (412)
+..+|++.||-||+-|+.|+.|.+.+ .++.++|+.+.. .|+.++. ++..+. .|..-+.+-++
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHH
Confidence 34789999999999999999999975 789999998864 4655431 111111 11111111100
Q ss_pred -----CCCCCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEE--EEE-cceEEEeCEEEEeeCCCCCC
Q 037065 79 -----GFPENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWR--VQT-QDSEYISKWLVVATGENAEP 150 (412)
Q Consensus 79 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~--v~~-~~~~~~~d~vIlAtG~~~~p 150 (412)
.|-.....++.+.++.+|++|.++++ -.++++++|+.|.......... +.+ .+..+.|+.||+++| .+|
T Consensus 81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G--~~P 157 (436)
T COG3486 81 HGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVG--TQP 157 (436)
T ss_pred cchHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccC--CCc
Confidence 01111134689999999999999998 6789999999664333222322 333 337999999999999 999
Q ss_pred CCCCC-CCCCCCccceeeccCCCCCC-CCCCC-eEEEEcCCCCHHHHHHHHhhc----CCccEEEEeCCCccccccccCC
Q 037065 151 VFPDV-VGLDKFNGHVLHTSKYKSGS-EFKNQ-KVLVIGCGNSGMEVSLDLCRH----NAIPHMVARNSVHVLPREIFGF 223 (412)
Q Consensus 151 ~~p~~-~g~~~~~~~~~~~~~~~~~~-~~~~~-~v~vvG~G~~~~e~a~~l~~~----g~~v~~~~r~~~~~~~~~~~~~ 223 (412)
.+|+. ..+. ..+++|+.++.... ....+ +|.|||+|+||.|+...|... ..++.|+.|++ -++|.
T Consensus 158 ~IP~~f~~l~--~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~-gf~p~----- 229 (436)
T COG3486 158 YIPPCFRSLI--GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSS-GFLPM----- 229 (436)
T ss_pred CCChHHhCcC--ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccC-CCCcc-----
Confidence 99953 2222 13789998886432 23344 499999999999999998865 34689999999 55565
Q ss_pred ChhhHHHHHHHhcchHHHHHHHHHHHHHhhc-----CccccCCCCCCCCCccccccCCCcccccchhhhhhc--cCCEEE
Q 037065 224 STFGIAMALLRWFPLRLVDKILLLMANITLG-----NTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIK--SGKIKV 296 (412)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v 296 (412)
+.+++..++|.++.++.+.......... .+...|++...+...+.. -+.+.+. ..++++
T Consensus 230 ---d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~-----------lY~~~l~~~~~~v~l 295 (436)
T COG3486 230 ---DYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDL-----------LYEQSLGGRKPDVRL 295 (436)
T ss_pred ---ccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHH-----------HHHHHhcCCCCCeee
Confidence 4456667788888877776653222111 233344433222222111 1122221 235555
Q ss_pred EcC--ceEEeCCe---EEe-------cCCcEecccEEEEcCCCCCCCCCccccCc--c-CCCCCCCCCCCCCCC--C--C
Q 037065 297 VGG--VKEITKNG---ARF-------TDGQEKEIDAIILATGYKSNVPTWLKECD--F-FTKDGMPKTPFPNGW--K--G 357 (412)
Q Consensus 297 ~~~--v~~i~~~~---v~~-------~~g~~~~~D~vi~atG~~p~~~~~l~~~~--~-~~~~G~~~~~~~~~~--~--~ 357 (412)
... |+.+.+.+ +.+ ...+++++|.||+||||+...+.||+.+. + .+++|...++.++.. . .
T Consensus 296 ~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~ 375 (436)
T COG3486 296 LSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPG 375 (436)
T ss_pred ccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCC
Confidence 554 66665543 322 12347899999999999988888888773 3 788888877654433 2 2
Q ss_pred CCCeEEEeeec
Q 037065 358 ENGLYTVGFTR 368 (412)
Q Consensus 358 ~~~iya~Gd~~ 368 (412)
...||+.|-..
T Consensus 376 ~~~ifvqn~e~ 386 (436)
T COG3486 376 KGRIFVQNAEL 386 (436)
T ss_pred cceEEEecccc
Confidence 34799999655
No 82
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.84 E-value=6.7e-21 Score=186.75 Aligned_cols=309 Identities=19% Similarity=0.206 Sum_probs=188.4
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
-++|+|||+||+||++|.+|.+.|+.|+|+||.+..||...+. +|++. ....+.+.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg---------------ipnmk---------ldk~vv~r 1840 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG---------------IPNMK---------LDKFVVQR 1840 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec---------------CCccc---------hhHHHHHH
Confidence 5899999999999999999999999999999999999876542 22221 11224444
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeec-cCCC---
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHT-SKYK--- 172 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~-~~~~--- 172 (412)
--++..+-|+++..++++-+- +..+.-.-..|.+|+|+|+ ..|+-.++||-+. +.+|. +++.
T Consensus 1841 rv~ll~~egi~f~tn~eigk~----------vs~d~l~~~~daiv~a~gs-t~prdlpv~grd~---kgv~fame~l~~n 1906 (2142)
T KOG0399|consen 1841 RVDLLEQEGIRFVTNTEIGKH----------VSLDELKKENDAIVLATGS-TTPRDLPVPGRDL---KGVHFAMEFLEKN 1906 (2142)
T ss_pred HHHHHHhhCceEEeecccccc----------ccHHHHhhccCeEEEEeCC-CCCcCCCCCCccc---cccHHHHHHHHHh
Confidence 445556668888777665111 2222223478999999996 4566666776543 11111 1111
Q ss_pred -----------CCCCCCCCeEEEEcCCCCHHHHHHHHhhcCCc-cEEEEeCCCccccccccCCChhhHHHHHHHhcchHH
Q 037065 173 -----------SGSEFKNQKVLVIGCGNSGMEVSLDLCRHNAI-PHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRL 240 (412)
Q Consensus 173 -----------~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
......+|+|+|||||.+|-++...-.+.|.+ |.-+ .+||.....+ ...+++++|-...-
T Consensus 1907 tk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~-----ellp~pp~~r---a~~npwpqwprvfr 1978 (2142)
T KOG0399|consen 1907 TKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNF-----ELLPQPPPER---APDNPWPQWPRVFR 1978 (2142)
T ss_pred HHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecce-----eecCCCCccc---CCCCCCccCceEEE
Confidence 11234689999999999999998877777753 3222 2222211100 11222233321111
Q ss_pred HHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcCceEEe----CCe----EEec-
Q 037065 241 VDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGGVKEIT----KNG----ARFT- 311 (412)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~i~----~~~----v~~~- 311 (412)
++.-......++-.+...+.+...++ +-+ .+++++=.. ..++. ..+ +...
T Consensus 1979 vdygh~e~~~~~g~dpr~y~vltk~f-------------~~~-------~~g~v~gl~-~vrvew~k~~~g~w~~~ei~~ 2037 (2142)
T KOG0399|consen 1979 VDYGHAEAKEHYGSDPRTYSVLTKRF-------------IGD-------DNGNVTGLE-TVRVEWEKDDKGRWQMKEINN 2037 (2142)
T ss_pred eecchHHHHHHhCCCcceeeeeeeee-------------ecc-------CCCceeeEE-EEEEEEEecCCCceEEEEcCC
Confidence 22222223334444444444321111 000 011221110 11111 111 1222
Q ss_pred CCcEecccEEEEcCCCCCCCCCccccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHHHHHH
Q 037065 312 DGQEKEIDAIILATGYKSNVPTWLKECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQDISE 387 (412)
Q Consensus 312 ~g~~~~~D~vi~atG~~p~~~~~l~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~~i~~ 387 (412)
+.+.+++|+||+|.||...-....+++++ .|.++.+.+......++++++||+|||+++.. .|+.+|+.+|+.+..
T Consensus 2038 see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2038 SEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred cceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHHHH
Confidence 33468999999999999886667888888 78888888776677789999999999998755 899999999999987
Q ss_pred hhccc
Q 037065 388 QWRKI 392 (412)
Q Consensus 388 ~~~~~ 392 (412)
.+.+.
T Consensus 2118 ~~~~~ 2122 (2142)
T KOG0399|consen 2118 LMGGT 2122 (2142)
T ss_pred HhCCc
Confidence 65543
No 83
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.81 E-value=8.8e-20 Score=162.67 Aligned_cols=275 Identities=17% Similarity=0.193 Sum_probs=174.8
Q ss_pred cccCeEEECCChHHHHHHHHHHHc--CCCeEEEecCCCCCc--------ccCCCCCCCeeeecCCccccCCCCC------
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQ--GLPSLILERSDCLAS--------LWKHRTYDRLKLHLPKQFCELPLFG------ 79 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~------ 79 (412)
++.-.+|||+|.+..+++...... +.++.+|...+.++. .|......... -+.|..+.
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k------~lrfkqwsGkeRsi 250 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAK------KLRFKQWSGKERSI 250 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhh------heeecccCCcccee
Confidence 356799999999988876666554 568888888776653 44432211110 00111111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCC-CCCC
Q 037065 80 FPENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFP-DVVG 157 (412)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p-~~~g 157 (412)
|-+-...|++.+++-+.... |+-+..+.+|..|+..++. |++++ .+|.||.++|||| .+|.-. .+..
T Consensus 251 ffepd~FfvspeDLp~~~nG-----GvAvl~G~kvvkid~~d~~----V~LnDG~~I~YdkcLIATG--~~Pk~l~~~~~ 319 (659)
T KOG1346|consen 251 FFEPDGFFVSPEDLPKAVNG-----GVAVLRGRKVVKIDEEDKK----VILNDGTTIGYDKCLIATG--VRPKKLQVFEE 319 (659)
T ss_pred EecCCcceeChhHCcccccC-----ceEEEeccceEEeecccCe----EEecCCcEeehhheeeecC--cCcccchhhhh
Confidence 00001124455554443333 7778888899999987643 77776 8899999999999 777654 3332
Q ss_pred CCCCccceeeccCCCCC------CCCCCCeEEEEcCCCCHHHHHHHHhhc----CCccEEEEeCCCccccccccCCChhh
Q 037065 158 LDKFNGHVLHTSKYKSG------SEFKNQKVLVIGCGNSGMEVSLDLCRH----NAIPHMVARNSVHVLPREIFGFSTFG 227 (412)
Q Consensus 158 ~~~~~~~~~~~~~~~~~------~~~~~~~v~vvG~G~~~~e~a~~l~~~----g~~v~~~~r~~~~~~~~~~~~~~~~~ 227 (412)
..+--...+.+..+..+ .....++|.|||+|.+|.|+|-.|.+. |.+|+.+...+
T Consensus 320 A~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek--------------- 384 (659)
T KOG1346|consen 320 ASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK--------------- 384 (659)
T ss_pred cCHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc---------------
Confidence 22111111222222221 112347899999999999999998875 55676665443
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeC
Q 037065 228 IAMALLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITK 305 (412)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~ 305 (412)
..+..++|..+.+.. .+.+++++++++++ |.++..
T Consensus 385 --~nm~kiLPeyls~wt-----------------------------------------~ekir~~GV~V~pna~v~sv~~ 421 (659)
T KOG1346|consen 385 --YNMEKILPEYLSQWT-----------------------------------------IEKIRKGGVDVRPNAKVESVRK 421 (659)
T ss_pred --CChhhhhHHHHHHHH-----------------------------------------HHHHHhcCceeccchhhhhhhh
Confidence 112233433333332 46778889999887 555543
Q ss_pred C----eEEecCCcEecccEEEEcCCCCCCCCCccccCcc-CC-CCCCCCCCCCCCCCCCCCeEEEeeec
Q 037065 306 N----GARFTDGQEKEIDAIILATGYKSNVPTWLKECDF-FT-KDGMPKTPFPNGWKGENGLYTVGFTR 368 (412)
Q Consensus 306 ~----~v~~~~g~~~~~D~vi~atG~~p~~~~~l~~~~~-~~-~~G~~~~~~~~~~~~~~~iya~Gd~~ 368 (412)
. -+.++||.++..|+|++|+|-.||. ++.+..++ .| ..|...++..+ .-..|||++||++
T Consensus 422 ~~~nl~lkL~dG~~l~tD~vVvavG~ePN~-ela~~sgLeiD~~lGGfrvnaeL--~ar~NvwvAGdaa 487 (659)
T KOG1346|consen 422 CCKNLVLKLSDGSELRTDLVVVAVGEEPNS-ELAEASGLEIDEKLGGFRVNAEL--KARENVWVAGDAA 487 (659)
T ss_pred hccceEEEecCCCeeeeeeEEEEecCCCch-hhcccccceeecccCcEEeehee--ecccceeeecchh
Confidence 2 3778999999999999999999998 78888888 66 35666666433 3347999999988
No 84
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.80 E-value=1e-18 Score=168.29 Aligned_cols=276 Identities=17% Similarity=0.182 Sum_probs=178.5
Q ss_pred eEEECCChHHHHHHHHHHHc--CCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCC-CCCCCHHHHHHH
Q 037065 20 PIIVGAGPSGLAVSACLSQQ--GLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENF-PKYPTKRQFIAY 96 (412)
Q Consensus 20 vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 96 (412)
++|||+|++|+.+|..|++. +.+++++.+....... .. +.+... ........+...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~-------~~--------------~~~~~~~~~~~~~~~~~~~ 59 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYY-------RC--------------PLSLYVGGGIASLEDLRYP 59 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCC-------CC--------------ccchHHhcccCCHHHhccc
Confidence 58999999999999999885 4588888877543210 00 000000 001111222211
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCCCCCC-
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGS- 175 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~- 175 (412)
.. ...+.++.++.+++|+.++..... +.+.+..+.||++|+||| .+|..+. +.. ...........+..
T Consensus 60 ~~-~~~~~~i~~~~~~~v~~id~~~~~----v~~~~g~~~yd~LvlatG--a~~~~~~--~~~--~~~~~~~~~~~~~~~ 128 (415)
T COG0446 60 PR-FNRATGIDVRTGTEVTSIDPENKV----VLLDDGEIEYDYLVLATG--ARPRPPP--ISD--WEGVVTLRLREDAEA 128 (415)
T ss_pred ch-hHHhhCCEEeeCCEEEEecCCCCE----EEECCCcccccEEEEcCC--CcccCCC--ccc--cCceEEECCHHHHHH
Confidence 11 224558888889999999986643 666666899999999999 7777664 111 11111211111110
Q ss_pred ----CCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHHHH
Q 037065 176 ----EFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMANI 251 (412)
Q Consensus 176 ----~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (412)
....++++|+|+|..|+++|..+.+.|.+|+++...+ ++++.... .+.
T Consensus 129 ~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~-~~~~~~~~----~~~----------------------- 180 (415)
T COG0446 129 LKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD-RLGGQLLD----PEV----------------------- 180 (415)
T ss_pred HHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc-ccchhhhh----HHH-----------------------
Confidence 1115799999999999999999999999999999988 44433210 011
Q ss_pred hhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCCe-------EEecCCcEecccEEE
Q 037065 252 TLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKNG-------ARFTDGQEKEIDAII 322 (412)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~~-------v~~~~g~~~~~D~vi 322 (412)
...+.+.++..+++++.+ +.++.... +...++..+++|+++
T Consensus 181 ------------------------------~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~ 230 (415)
T COG0446 181 ------------------------------AEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVI 230 (415)
T ss_pred ------------------------------HHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEE
Confidence 111234455566777655 67776542 567788899999999
Q ss_pred EcCCCCCCCCCccccCc--cCCCCCCCCCCCCCCCCC-CCCeEEEeeecCccc-------------cchhhHHHHHHHHH
Q 037065 323 LATGYKSNVPTWLKECD--FFTKDGMPKTPFPNGWKG-ENGLYTVGFTRRGLQ-------------GTALDADKIAQDIS 386 (412)
Q Consensus 323 ~atG~~p~~~~~l~~~~--~~~~~G~~~~~~~~~~~~-~~~iya~Gd~~~~~~-------------~a~~~~~~~a~~i~ 386 (412)
+++|.+||. .+.++.+ .....|++.++. ..+++ .+++|++||++.... .+..+++.++.++.
T Consensus 231 ~~~g~~p~~-~l~~~~~~~~~~~~g~i~v~~-~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~ 308 (415)
T COG0446 231 IGPGERPNV-VLANDALPGLALAGGAVLVDE-RGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIA 308 (415)
T ss_pred EeecccccH-HHHhhCccceeccCCCEEEcc-ccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhc
Confidence 999999995 5666664 566788898884 45565 999999999883321 44555666666655
Q ss_pred H
Q 037065 387 E 387 (412)
Q Consensus 387 ~ 387 (412)
.
T Consensus 309 ~ 309 (415)
T COG0446 309 G 309 (415)
T ss_pred c
Confidence 3
No 85
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.80 E-value=4.3e-19 Score=168.07 Aligned_cols=295 Identities=20% Similarity=0.218 Sum_probs=180.4
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||+||+||++|..|++.|+.|+++|+.+..||..... +| .+-...++.+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG---------------IP---------~~kl~k~i~d~ 178 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG---------------IP---------DFKLPKDILDR 178 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec---------------Cc---------hhhccchHHHH
Confidence 4899999999999999999999999999999999998865442 22 22233566777
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCC-----
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKY----- 171 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~----- 171 (412)
..++.++.+++++.+.++- . .++.+.-.-.+|+|++|+|. ..|...+++|.+. .+ +....++
T Consensus 179 ~i~~l~~~Gv~~~~~~~vG---------~-~it~~~L~~e~Dav~l~~G~-~~~~~l~i~g~d~-~g-v~~A~dfL~~~~ 245 (457)
T COG0493 179 RLELLERSGVEFKLNVRVG---------R-DITLEELLKEYDAVFLATGA-GKPRPLDIPGEDA-KG-VAFALDFLTRLN 245 (457)
T ss_pred HHHHHHHcCeEEEEcceEC---------C-cCCHHHHHHhhCEEEEeccc-cCCCCCCCCCcCC-Cc-chHHHHHHHHHH
Confidence 7777888898888887662 1 13333323355999999997 5677777777652 11 1111111
Q ss_pred -------C--CCCCCCCCeEEEEcCCCCHHHHHHHHhhcCC-ccEEEEeCCCc-cccccccCCChhhHHHHHHHhcchHH
Q 037065 172 -------K--SGSEFKNQKVLVIGCGNSGMEVSLDLCRHNA-IPHMVARNSVH-VLPREIFGFSTFGIAMALLRWFPLRL 240 (412)
Q Consensus 172 -------~--~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~-~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
. ......+++++|||+|.+++|++.....+|+ +|+.+.+.... -..... .
T Consensus 246 ~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~-------------------~ 306 (457)
T COG0493 246 KEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWP-------------------T 306 (457)
T ss_pred HHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCccc-------------------c
Confidence 1 1112245999999999999999999999987 67777633311 000000 0
Q ss_pred HHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhh--ccCCEEEEcC--ceEE---eC----CeEE
Q 037065 241 VDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQI--KSGKIKVVGG--VKEI---TK----NGAR 309 (412)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~--v~~i---~~----~~v~ 309 (412)
+.+... .......++. ........+.+ ++++++-... +..- +. ..+-
T Consensus 307 ~~~~~~------~~~a~eeg~~----------------~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~ 364 (457)
T COG0493 307 WAAQLE------VRSAGEEGVE----------------RLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVG 364 (457)
T ss_pred cchhhh------hhhhhhcCCc----------------ccccCCceeEeecCCCcEeeeecccccccCcccccccccCcc
Confidence 000000 0000111110 00111111112 1222221111 1000 00 0111
Q ss_pred ecC-CcEecccEEEEcCCCCCCCCCcc-ccCcc-CCCCCCCCCCCCCCCCCCCCeEEEeeecCccc---cchhhHHHHHH
Q 037065 310 FTD-GQEKEIDAIILATGYKSNVPTWL-KECDF-FTKDGMPKTPFPNGWKGENGLYTVGFTRRGLQ---GTALDADKIAQ 383 (412)
Q Consensus 310 ~~~-g~~~~~D~vi~atG~~p~~~~~l-~~~~~-~~~~G~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~~~~~~a~ 383 (412)
... ...+++|.|+.|+|+.++..... ...++ .+..|.+.++....+|+.+++|+.||+.++.. .|+.+|+.+|+
T Consensus 365 v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak 444 (457)
T COG0493 365 VIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAK 444 (457)
T ss_pred ccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchHHHH
Confidence 111 23679999999999999864432 23255 67889999885545899999999999998533 89999999999
Q ss_pred HHHHhh
Q 037065 384 DISEQW 389 (412)
Q Consensus 384 ~i~~~~ 389 (412)
.|..++
T Consensus 445 ~i~~~~ 450 (457)
T COG0493 445 AIDKEL 450 (457)
T ss_pred hhhHHH
Confidence 998443
No 86
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.75 E-value=9.3e-17 Score=142.24 Aligned_cols=148 Identities=21% Similarity=0.260 Sum_probs=102.0
Q ss_pred cccCeEEECCChHHHHHHHHHHHc--CCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQ--GLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQF 93 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
...+|+|||+||||+++|..|.++ +.+|+|+|+.+...|..+.. ..++++.-...
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG-----------------------VAPDHpEvKnv 75 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG-----------------------VAPDHPEVKNV 75 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec-----------------------cCCCCcchhhH
Confidence 356999999999999999999995 58999999999877765443 12344555556
Q ss_pred HHHHHHHHHHcCCcccccceE-EEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceeeccCC-
Q 037065 94 IAYIESYASHFKIQPKFKQAV-QTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLHTSKY- 171 (412)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~- 171 (412)
..-+.+.+++....+..+.+| .. +....-+-.||.||||.|+ ..++..+|||.+. .+ ++...++
T Consensus 76 intFt~~aE~~rfsf~gNv~vG~d-----------vsl~eL~~~ydavvLaYGa-~~dR~L~IPGe~l-~~-V~Sarefv 141 (468)
T KOG1800|consen 76 INTFTKTAEHERFSFFGNVKVGRD-----------VSLKELTDNYDAVVLAYGA-DGDRRLDIPGEEL-SG-VISAREFV 141 (468)
T ss_pred HHHHHHHhhccceEEEecceeccc-----------ccHHHHhhcccEEEEEecC-CCCcccCCCCccc-cc-ceehhhhh
Confidence 666667777766666656544 22 2222234589999999997 4566778888762 11 1111111
Q ss_pred ----------CCCCCCCCCeEEEEcCCCCHHHHHHHHhh
Q 037065 172 ----------KSGSEFKNQKVLVIGCGNSGMEVSLDLCR 200 (412)
Q Consensus 172 ----------~~~~~~~~~~v~vvG~G~~~~e~a~~l~~ 200 (412)
....+....+|+|||.|..++|+|+.|..
T Consensus 142 ~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls 180 (468)
T KOG1800|consen 142 GWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLS 180 (468)
T ss_pred hhccCCCcccccCcccccceEEEEccCchhhhhhhhhhC
Confidence 11233457899999999999999988763
No 87
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.73 E-value=9.7e-16 Score=144.41 Aligned_cols=162 Identities=19% Similarity=0.169 Sum_probs=99.3
Q ss_pred ccCeEEECCChHHHHHHHHHH-HcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLS-QQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~-~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
.++|+|||||||||++|..|+ +.|++|+|+|+.+..+|.++.... +..+....+.+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVa-----------------------Pdh~~~k~v~~ 95 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVA-----------------------PDHIHVKNTYK 95 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCC-----------------------CCCccHHHHHH
Confidence 568999999999999999876 569999999999999987765311 12244456666
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCC--------CC-CCCC---Ccc
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPD--------VV-GLDK---FNG 163 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~--------~~-g~~~---~~~ 163 (412)
.+...+...++++..+.+| .. .+..+.-.-.||.||+|+|+. ...+|- +. |.+. ..+
T Consensus 96 ~f~~~~~~~~v~f~gnv~V-----G~-----Dvt~eeL~~~YDAVIlAtGA~-~l~ipi~~~~~~~~~~GGe~~~~~l~G 164 (506)
T PTZ00188 96 TFDPVFLSPNYRFFGNVHV-----GV-----DLKMEELRNHYNCVIFCCGAS-EVSIPIGQQDEDKAVSGGETNPRKQNG 164 (506)
T ss_pred HHHHHHhhCCeEEEeeeEe-----cC-----ccCHHHHHhcCCEEEEEcCCC-CCCCCcccccceeeeccccccccccCc
Confidence 6666555556555433222 11 022333223899999999963 222220 00 2210 011
Q ss_pred ----ceeecc--CCCCC----CC------C-CCCeEEEEcCCCCHHHHHHHHhh--------------------c-CCcc
Q 037065 164 ----HVLHTS--KYKSG----SE------F-KNQKVLVIGCGNSGMEVSLDLCR--------------------H-NAIP 205 (412)
Q Consensus 164 ----~~~~~~--~~~~~----~~------~-~~~~v~vvG~G~~~~e~a~~l~~--------------------~-g~~v 205 (412)
..+..+ ...+. .. + ..++++|||.|.+|+|+|+.|+. . -.+|
T Consensus 165 vf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V 244 (506)
T PTZ00188 165 IFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHI 244 (506)
T ss_pred EEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEE
Confidence 111111 01100 01 1 45789999999999999997542 1 2379
Q ss_pred EEEEeCC
Q 037065 206 HMVARNS 212 (412)
Q Consensus 206 ~~~~r~~ 212 (412)
+++.|+.
T Consensus 245 ~ivgRRG 251 (506)
T PTZ00188 245 YIVGRRG 251 (506)
T ss_pred EEEEecC
Confidence 9999998
No 88
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.72 E-value=2.3e-16 Score=158.65 Aligned_cols=327 Identities=13% Similarity=0.117 Sum_probs=163.5
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccC--C-----CCCCCeeee-cCCccccCCCCCCCCCCCCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWK--H-----RTYDRLKLH-LPKQFCELPLFGFPENFPKY 87 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~--~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 87 (412)
..++|+|||+||||+++|..|++.|++|+++|+.+..|+... . ..|..+... .+...-....+..+ +
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp-----~ 456 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGIT-----V 456 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcc-----c
Confidence 468999999999999999999999999999999765433211 0 001111000 00000000000001 0
Q ss_pred CCHHHHHHHHHHHHHH-cCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccce
Q 037065 88 PTKRQFIAYIESYASH-FKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHV 165 (412)
Q Consensus 88 ~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~ 165 (412)
-......+.++...+. .++.++.+.++ ..+ ++.++ ....||+|++|||+ +.|..+.+||.+. ..+
T Consensus 457 R~~k~~l~~i~~il~~g~~v~~~~gv~l-G~d---------it~edl~~~gyDAV~IATGA-~kpr~L~IPGeda--~GV 523 (1028)
T PRK06567 457 RWDKNNLDILRLILERNNNFKYYDGVAL-DFN---------ITKEQAFDLGFDHIAFCIGA-GQPKVLDIENFEA--KGV 523 (1028)
T ss_pred cchHHHHHHHHHHHhcCCceEEECCeEE-Ccc---------CCHHHHhhcCCCEEEEeCCC-CCCCCCCCCCccC--CCe
Confidence 0111222222222221 12333334321 000 22222 34679999999994 3688888888764 122
Q ss_pred eeccCCCCC-------------CCCCCCeEEEEcCCCCHHHHHHHHhh---cCCccEEEEeCCCccccccccCCChhhHH
Q 037065 166 LHTSKYKSG-------------SEFKNQKVLVIGCGNSGMEVSLDLCR---HNAIPHMVARNSVHVLPREIFGFSTFGIA 229 (412)
Q Consensus 166 ~~~~~~~~~-------------~~~~~~~v~vvG~G~~~~e~a~~l~~---~g~~v~~~~r~~~~~~~~~~~~~~~~~~~ 229 (412)
....++... ....+++|+|||||.+|+|+|..... .+.++++....+ +.+|.++. +.+
T Consensus 524 ~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~-~~~~~~d~-----eia 597 (1028)
T PRK06567 524 KTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIE-KDLTEEDK-----EIA 597 (1028)
T ss_pred EEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhh-hhcccccH-----HHH
Confidence 222221111 01135789999999999999996554 244444444444 44455544 555
Q ss_pred HHHHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccc--cchhhhhhccCCEEEEcC--ceEEeC
Q 037065 230 MALLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVL--DVGALSQIKSGKIKVVGG--VKEITK 305 (412)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~v~~~--v~~i~~ 305 (412)
..+...+......+... ....-..+.|- ..-.+.+.. ...|.. +...++.....||+++.. ..++..
T Consensus 598 ~~f~~h~r~~g~~~~~~----~v~~l~~~~G~----VtIvYRr~~-~empA~~~~~eEv~~A~eEGV~f~~~~~P~~i~~ 668 (1028)
T PRK06567 598 EEFIAHAKLFKEAKNNE----ELRKVFNKLGG----ATVYYRGRL-QDSPAYKLNHEELIYALALGVDFKENMQPLRINV 668 (1028)
T ss_pred HHHHHHHHhhcchhccc----hhhhhhccCCc----eEEEecCCh-hhCCCCCCCHHHHHHHHHcCcEEEecCCcEEEEe
Confidence 55555542111000000 00000000110 000000000 001111 122333444556666543 333321
Q ss_pred C------eEEe---------------c---------------CCcEecccEEEEcCCCCCCCCCccccCccCCCCCCCCC
Q 037065 306 N------GARF---------------T---------------DGQEKEIDAIILATGYKSNVPTWLKECDFFTKDGMPKT 349 (412)
Q Consensus 306 ~------~v~~---------------~---------------~g~~~~~D~vi~atG~~p~~~~~l~~~~~~~~~G~~~~ 349 (412)
+ ++.+ + ...+++||.||+|+|..||+. +. ..
T Consensus 669 d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~-~~------------~~ 735 (1028)
T PRK06567 669 DKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQ-FD------------ED 735 (1028)
T ss_pred cCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccc-cc------------cc
Confidence 1 1111 1 113689999999999999983 31 11
Q ss_pred CCCCCCCCCCCeEEEeeecCccccchhhHHHHHHHHHHhhccccc
Q 037065 350 PFPNGWKGENGLYTVGFTRRGLQGTALDADKIAQDISEQWRKIKD 394 (412)
Q Consensus 350 ~~~~~~~~~~~iya~Gd~~~~~~~a~~~~~~~a~~i~~~~~~~~~ 394 (412)
+ ....++.+++|+- ++-.|+.+|+..+.+|.+.+.....
T Consensus 736 ~-~s~~~d~~~~f~G-----tvv~A~as~k~~~~~i~~~l~~~~~ 774 (1028)
T PRK06567 736 K-YSYFGDCNPKYSG-----SVVKALASSKEGYDAINKKLINNNP 774 (1028)
T ss_pred c-cccccCCCCcccc-----HHHHHHHHHHhHHHHHHHHHhhCCC
Confidence 1 1344555666654 5558999999999999998877644
No 89
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.69 E-value=9.1e-16 Score=132.87 Aligned_cols=299 Identities=18% Similarity=0.189 Sum_probs=171.2
Q ss_pred ccccCeEEECCChHHHHHHHHHHHc-CC-CeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHH
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQ-GL-PSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQ 92 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~-g~-~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
..+++|+|||||.+|+..|..+.++ +. +|.|+|+.+.. + |+..-........++....-+ .....|..
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H---y----YQPgfTLvGgGl~~l~~srr~-~a~liP~~-- 106 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH---Y----YQPGFTLVGGGLKSLDSSRRK-QASLIPKG-- 106 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc---c----cCcceEEeccchhhhhhccCc-ccccccCC--
Confidence 4579999999999999999999886 43 89999987641 1 111000000000011000000 00001111
Q ss_pred HHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCC---ccceeec
Q 037065 93 FIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKF---NGHVLHT 168 (412)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~---~~~~~~~ 168 (412)
..++++ +|++.+++++. |.+.+ ++|+|||+|+|+| .+.....|+|+.+. ++-+..+
T Consensus 107 -a~wi~e-------------kv~~f~P~~N~----v~t~gg~eIsYdylviA~G--iql~y~~IkGl~Eal~tP~VcSnY 166 (446)
T KOG3851|consen 107 -ATWIKE-------------KVKEFNPDKNT----VVTRGGEEISYDYLVIAMG--IQLDYGKIKGLVEALDTPGVCSNY 166 (446)
T ss_pred -cHHHHH-------------HHHhcCCCcCe----EEccCCcEEeeeeEeeeee--ceeccchhcChHhhccCCCccccc
Confidence 122333 34444444432 55555 7899999999999 66666666665331 1111111
Q ss_pred cCC--------CC-------CCCCCCCeEEEEcCCCCHHHHHHHHhhc-CC--ccEEEEeCCCccccccccCCChhhHHH
Q 037065 169 SKY--------KS-------GSEFKNQKVLVIGCGNSGMEVSLDLCRH-NA--IPHMVARNSVHVLPREIFGFSTFGIAM 230 (412)
Q Consensus 169 ~~~--------~~-------~~~~~~~~v~vvG~G~~~~e~a~~l~~~-g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~ 230 (412)
+.. .. ...++...+-..|+-+-.+-++....++ |. ++.++.... ||.
T Consensus 167 Spkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Ts---l~~------------ 231 (446)
T KOG3851|consen 167 SPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTS---LPT------------ 231 (446)
T ss_pred ChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecC---ccc------------
Confidence 110 00 0011222334456655566666665544 42 456666554 111
Q ss_pred HHHHhcchHHHHHHHHHHHHHhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC-e
Q 037065 231 ALLRWFPLRLVDKILLLMANITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN-G 307 (412)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~-~ 307 (412)
+|..+ -..+.+.+.++..+|++... ..|+..+ .
T Consensus 232 ----iFgVk----------------------------------------~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~ 267 (446)
T KOG3851|consen 232 ----IFGVK----------------------------------------HYADALEKVIQERNITVNYKRNLIEVRTNDR 267 (446)
T ss_pred ----eecHH----------------------------------------HHHHHHHHHHHhcceEeeeccceEEEeccch
Confidence 11111 11222345566677777643 4444432 2
Q ss_pred -EEe----cCCc--EecccEEEEcCCCCCCCCCccccCccCCCCCCCCCCCCCCC-CCCCCeEEEeeecCccc-----cc
Q 037065 308 -ARF----TDGQ--EKEIDAIILATGYKSNVPTWLKECDFFTKDGMPKTPFPNGW-KGENGLYTVGFTRRGLQ-----GT 374 (412)
Q Consensus 308 -v~~----~~g~--~~~~D~vi~atG~~p~~~~~l~~~~~~~~~G~~~~~~~~~~-~~~~~iya~Gd~~~~~~-----~a 374 (412)
..+ ..|. +++++++-+....++. +.+..+.+.|..||+.+|..++| +.+||+|++|||++.+. ..
T Consensus 268 ~AvFe~L~kPG~t~ei~yslLHv~Ppms~p--e~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAv 345 (446)
T KOG3851|consen 268 KAVFENLDKPGVTEEIEYSLLHVTPPMSTP--EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAV 345 (446)
T ss_pred hhHHHhcCCCCceeEEeeeeeeccCCCCCh--hhhhcCcccCcccceecChhhhccccCCCceeeccccCCCchhhHHHH
Confidence 111 2243 6899999888888876 67888889999999999966555 78999999999998876 44
Q ss_pred hhhHHHHHHHHHHhhcccccccCCCCCccccC
Q 037065 375 ALDADKIAQDISEQWRKIKDLNNNNNNNYTSN 406 (412)
Q Consensus 375 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~ 406 (412)
..|+..+-.||...+++... .....+|+++
T Consensus 346 aaq~~vv~~nl~~~m~g~~p--t~~ydGYtSC 375 (446)
T KOG3851|consen 346 AAQSPVVDKNLTQVMQGKRP--TMKYDGYTSC 375 (446)
T ss_pred HhcCchhhhhHHHHhcCCCc--ceeecCcccC
Confidence 66778888999999888643 5556666654
No 90
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.68 E-value=5.1e-15 Score=135.20 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=56.7
Q ss_pred EecccEEEEcCCCCCCCC--CccccCcc-CCCCCCCCCCCCCCC---CCCCCeEEEeeecCccc--cchhhHHHHHHHHH
Q 037065 315 EKEIDAIILATGYKSNVP--TWLKECDF-FTKDGMPKTPFPNGW---KGENGLYTVGFTRRGLQ--GTALDADKIAQDIS 386 (412)
Q Consensus 315 ~~~~D~vi~atG~~p~~~--~~l~~~~~-~~~~G~~~~~~~~~~---~~~~~iya~Gd~~~~~~--~a~~~~~~~a~~i~ 386 (412)
++++|+|++++|+.|... .+-+-+|+ .+++||+.-.++.+. ++.+|||.+|-+..+.. .+..||.-+|...+
T Consensus 462 e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkdI~~siaqa~aAA~kA~ 541 (622)
T COG1148 462 EIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKDIADSIAQAKAAAAKAA 541 (622)
T ss_pred ecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCccHHHHHHHhHHHHHHHH
Confidence 789999999999999652 24445588 889999987766555 67899999998886633 56666666665555
Q ss_pred Hhhcc
Q 037065 387 EQWRK 391 (412)
Q Consensus 387 ~~~~~ 391 (412)
..+..
T Consensus 542 ~~l~~ 546 (622)
T COG1148 542 QLLGR 546 (622)
T ss_pred HHhhc
Confidence 55544
No 91
>PRK09897 hypothetical protein; Provisional
Probab=99.67 E-value=1.3e-14 Score=140.83 Aligned_cols=189 Identities=15% Similarity=0.129 Sum_probs=113.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcC--CCeEEEecCCCCC-c-ccCCCC-CCCeeeecC--------CccccCCC------
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQG--LPSLILERSDCLA-S-LWKHRT-YDRLKLHLP--------KQFCELPL------ 77 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~vie~~~~~g-~-~~~~~~-~~~~~~~~~--------~~~~~~~~------ 77 (412)
|++|+|||||++|+++|.+|.+.+ .+|+|||++..+| | .|.... ...+.++.+ ..+.+...
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 468999999999999999999864 5899999987776 3 344311 111111111 01111000
Q ss_pred -----CCC-CCCCCCCCCHHHHHHHHHHHHHH-------cC--CcccccceEEEEEEcCCCCcEEEEEcc--eEEEeCEE
Q 037065 78 -----FGF-PENFPKYPTKRQFIAYIESYASH-------FK--IQPKFKQAVQTALFDHASGFWRVQTQD--SEYISKWL 140 (412)
Q Consensus 78 -----~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~v~~i~~~~~~~~~~v~~~~--~~~~~d~v 140 (412)
... ......|+++..+.+|+++..+. .+ +.++.+++|++++..+ +.|.+.+.+ ..+.+|+|
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~gg~~i~aD~V 158 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQDLPSETFDLA 158 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCCCeEEEcCEE
Confidence 000 00012466666666666553332 23 4566788999998876 678888754 57899999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCccceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcC------------------
Q 037065 141 VVATGENAEPVFPDVVGLDKFNGHVLHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHN------------------ 202 (412)
Q Consensus 141 IlAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g------------------ 202 (412)
|+|||.. .|..+ ++...+ +...+.........+.+|+|+|.|.+++|.+..|...+
T Consensus 159 VLAtGh~-~p~~~--~~~~~y---i~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~s 232 (534)
T PRK09897 159 VIATGHV-WPDEE--EATRTY---FPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNA 232 (534)
T ss_pred EECCCCC-CCCCC--hhhccc---cCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcceeeecCC
Confidence 9999952 22222 111111 00001111111234689999999999999999988552
Q ss_pred ---CccEEEEeCCC
Q 037065 203 ---AIPHMVARNSV 213 (412)
Q Consensus 203 ---~~v~~~~r~~~ 213 (412)
.+++.+.|+..
T Consensus 233 g~~~~I~a~SRrGl 246 (534)
T PRK09897 233 SEKLNITLMSRTGI 246 (534)
T ss_pred CCCceEEEEeCCCC
Confidence 26788888773
No 92
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.66 E-value=4.2e-14 Score=130.93 Aligned_cols=193 Identities=19% Similarity=0.251 Sum_probs=121.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHcC---CCeEEEecCCCCCc-ccCCCCCCCeeeecCCccccCC--CCC-----------
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQG---LPSLILERSDCLAS-LWKHRTYDRLKLHLPKQFCELP--LFG----------- 79 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g---~~v~vie~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~----------- 79 (412)
+++|+|||+|++|++.|.+|.+.- ..|.|+|+.+.+|. ......-+.-.++.+...+... ..+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 478999999999999999999962 24999999988764 3333323333444443322221 100
Q ss_pred --------CCCCCCCCCCHHHHHHHHHHHHHHc----CCc-c-cccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEee
Q 037065 80 --------FPENFPKYPTKRQFIAYIESYASHF----KIQ-P-KFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVAT 144 (412)
Q Consensus 80 --------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~-~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAt 144 (412)
+..+...|+++..+-+|+.+....+ .-. + +...+++++....+.+.+.+...+ ....||-+|+||
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 1122345788888888887765554 211 2 335567777776544677777777 667999999999
Q ss_pred CCCCCCCCCCCCCCCCCccceeecc-CCCC---CCCCCCCeEEEEcCCCCHHHHHHHHhhcCC--ccEEEEeCC
Q 037065 145 GENAEPVFPDVVGLDKFNGHVLHTS-KYKS---GSEFKNQKVLVIGCGNSGMEVSLDLCRHNA--IPHMVARNS 212 (412)
Q Consensus 145 G~~~~p~~p~~~g~~~~~~~~~~~~-~~~~---~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~--~v~~~~r~~ 212 (412)
|.. .|..+.. ...+.+...+.. .+.. .......+|+|+|+|.+-+|....+...|. +++.+.|+.
T Consensus 161 gh~-~~~~~~~--~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 161 GHS-APPADPA--ARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred cCC-CCCcchh--hhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 952 2222211 111111111111 1111 112234569999999999999999999874 789999998
No 93
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.66 E-value=1e-16 Score=138.46 Aligned_cols=119 Identities=23% Similarity=0.312 Sum_probs=74.5
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH---
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA--- 95 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 95 (412)
||+|||||++|+++|..|++.+.+++|+|+.+..+..... . +... ..........+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~--~--------------~~~~---~~~~~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGC--I--------------PSPL---LVEIAPHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSH--H--------------HHHH---HHHHHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccc--c--------------cccc---cccccccccccccccc
Confidence 6999999999999999999999999999887632210000 0 0000 0000000011110
Q ss_pred -HHHHHHHHcCCcccccceEEEEEEcCCC---CcEEEE---E-cceEEEeCEEEEeeCCCCCCCCCCCCCC
Q 037065 96 -YIESYASHFKIQPKFKQAVQTALFDHAS---GFWRVQ---T-QDSEYISKWLVVATGENAEPVFPDVVGL 158 (412)
Q Consensus 96 -~~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~~~v~---~-~~~~~~~d~vIlAtG~~~~p~~p~~~g~ 158 (412)
.+.+.....+++++.+++|.+++..... ..+.+. . +..++.||+||+||| +.|..|.+||.
T Consensus 62 ~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG--~~~~~~~i~g~ 130 (201)
T PF07992_consen 62 FKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATG--SRPRTPNIPGE 130 (201)
T ss_dssp GHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEEST--EEEEEESSTTT
T ss_pred cccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCc--cccceeecCCC
Confidence 2222234568888778999999887731 112221 1 227899999999999 78888888876
No 94
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.54 E-value=1.6e-13 Score=115.80 Aligned_cols=296 Identities=18% Similarity=0.145 Sum_probs=148.2
Q ss_pred CeEEECCChHHHHHHHHHHHc--CCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 19 GPIIVGAGPSGLAVSACLSQQ--GLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
+.+|||||+||.++|.+|+.+ ..+|+++-..+.+-.. .....+.+|
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksv--------------------------------tn~~~i~~y 48 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV--------------------------------TNYQKIGQY 48 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH--------------------------------hhHHHHHHH
Confidence 468999999999999999986 4588888887643211 112333333
Q ss_pred HHHHH------HHcCCcc--cccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCCCCCCCccceee
Q 037065 97 IESYA------SHFKIQP--KFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVVGLDKFNGHVLH 167 (412)
Q Consensus 97 ~~~~~------~~~~~~~--~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~ 167 (412)
++++- ..++..+ ..+ .|..++. ....+++.+ .++.|++|++|+| .+|.... ++..+ +++.
T Consensus 49 lekfdv~eq~~~elg~~f~~~~~-~v~~~~s----~ehci~t~~g~~~ky~kKOG~tg--~kPklq~-E~~n~---~Iv~ 117 (334)
T KOG2755|consen 49 LEKFDVKEQNCHELGPDFRRFLN-DVVTWDS----SEHCIHTQNGEKLKYFKLCLCTG--YKPKLQV-EGINP---KIVG 117 (334)
T ss_pred HHhcCccccchhhhcccHHHHHH-hhhhhcc----ccceEEecCCceeeEEEEEEecC--CCcceee-cCCCc---eEEE
Confidence 33221 1111111 011 1222222 223366665 7899999999999 7776542 22221 3444
Q ss_pred ccCCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHH
Q 037065 168 TSKYKSG-----SEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVD 242 (412)
Q Consensus 168 ~~~~~~~-----~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (412)
..+.... .....|.|.|+|.|-+++|++..+... +|+|....+ ++...+..- ....++.-.+..+-..
T Consensus 118 irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~--nv~w~ikd~-~IsaTFfdp----Gaaef~~i~l~a~~s~ 190 (334)
T KOG2755|consen 118 IRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKIL--NVTWKIKDE-GISATFFDP----GAAEFYDINLRADRST 190 (334)
T ss_pred EecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcc--eeEEEecch-hhhhcccCc----cHHHHhHhhhhccccc
Confidence 4333222 223678999999999999999988765 789998877 443222110 1112222112000001
Q ss_pred HHHHHHHHHhhc-Cccc-cCCCCCCCCCcccccc--CCCcccccchhhhhhccCCEEEEcCceEEeCCeEEecC---C--
Q 037065 243 KILLLMANITLG-NTDQ-LGLRRPKTGPIELKNI--TGKTPVLDVGALSQIKSGKIKVVGGVKEITKNGARFTD---G-- 313 (412)
Q Consensus 243 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~v~~~v~~i~~~~v~~~~---g-- 313 (412)
+........+.. ..+. -...-+.+++.+-... .+... ..+..+..++.--+.+... -+...++..+ +
T Consensus 191 ~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~e-seer~l~~l~~~~~~~~d~---~d~~sv~~~~~ek~~~ 266 (334)
T KOG2755|consen 191 RIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISE-SENRSLTYLRNCVITSTDT---SDNLSVHYMDKEKMAD 266 (334)
T ss_pred chhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchh-hhhhhhHHhhhheeeeccc---hhhccccccccccccc
Confidence 111111111110 0000 0000111111111110 00000 1111111111111111000 0001122211 1
Q ss_pred cEecccEEEEcCCCCCCCCCccccCccCCCCCCCCCCCCCCCCCCCCeEEEeeecC
Q 037065 314 QEKEIDAIILATGYKSNVPTWLKECDFFTKDGMPKTPFPNGWKGENGLYTVGFTRR 369 (412)
Q Consensus 314 ~~~~~D~vi~atG~~p~~~~~l~~~~~~~~~G~~~~~~~~~~~~~~~iya~Gd~~~ 369 (412)
..+.+|.++.|||..||.+-++..+-...++|.+.+++ .+.|+-|++||+||...
T Consensus 267 ~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd-~m~tslpdvFa~gDvct 321 (334)
T KOG2755|consen 267 NQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDD-AMETSLPDVFAAGDVCT 321 (334)
T ss_pred ceeeeeEEEeccccCcCceEEecChhhhccccCeeehh-hccccccceeeecceec
Confidence 25779999999999999963344443367888888883 67889999999999775
No 95
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.50 E-value=6e-14 Score=126.69 Aligned_cols=134 Identities=18% Similarity=0.285 Sum_probs=97.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCccc-----------CCCCCCCeeeecC---Ccc----ccCCC-
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLW-----------KHRTYDRLKLHLP---KQF----CELPL- 77 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~-----------~~~~~~~~~~~~~---~~~----~~~~~- 77 (412)
++||+|||||+|||.||..+++.|.+|+|||+.+.+|... +...+..+..+.| .+. .+|..
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 6899999999999999999999999999999998776411 1111222222333 111 11111
Q ss_pred ----------CCCCC-----CCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcce-EEEeCEEE
Q 037065 78 ----------FGFPE-----NFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDS-EYISKWLV 141 (412)
Q Consensus 78 ----------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~-~~~~d~vI 141 (412)
..+.. -++.-.....+.+.+...+++.+++++.+++|.+++.++ ..|.+.+.+. ++++|.+|
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~li 160 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLI 160 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEE
Confidence 01000 012224578899999999999999999999999999987 7888999996 79999999
Q ss_pred EeeCCCCCCCC
Q 037065 142 VATGENAEPVF 152 (412)
Q Consensus 142 lAtG~~~~p~~ 152 (412)
+|||..|.|..
T Consensus 161 lAtGG~S~P~l 171 (408)
T COG2081 161 LATGGKSWPKL 171 (408)
T ss_pred EecCCcCCCCC
Confidence 99998777743
No 96
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.40 E-value=1.8e-12 Score=122.27 Aligned_cols=133 Identities=21% Similarity=0.307 Sum_probs=76.8
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCccc-----------C-CCCCCCeeee---cCCccc----cC---
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLW-----------K-HRTYDRLKLH---LPKQFC----EL--- 75 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~-----------~-~~~~~~~~~~---~~~~~~----~~--- 75 (412)
|||+|||||+|||.||+.|++.|.+|+|+|+++.+|... + ...+..+... .+.... .+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 799999999999999999999999999999998776411 0 0001111111 000000 00
Q ss_pred --------CCCCCC--CC---CCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEE-cceEEEeCEEE
Q 037065 76 --------PLFGFP--EN---FPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQT-QDSEYISKWLV 141 (412)
Q Consensus 76 --------~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~-~~~~~~~d~vI 141 (412)
.+.++. .. ++.......+.+.+...+++.+++++++++|.++...++ +.|.|.+ .+.++.+|.||
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~~f~v~~~~~~~~~a~~vI 159 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-GVFGVKTKNGGEYEADAVI 159 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-EEEEEEETTTEEEEESEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-ceeEeeccCcccccCCEEE
Confidence 011110 00 112235788889999999999999999999999998762 3489999 66999999999
Q ss_pred EeeCCCCCCC
Q 037065 142 VATGENAEPV 151 (412)
Q Consensus 142 lAtG~~~~p~ 151 (412)
+|||..+.|.
T Consensus 160 LAtGG~S~p~ 169 (409)
T PF03486_consen 160 LATGGKSYPK 169 (409)
T ss_dssp E----SSSGG
T ss_pred EecCCCCccc
Confidence 9999765554
No 97
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.33 E-value=2.2e-11 Score=100.03 Aligned_cols=124 Identities=25% Similarity=0.296 Sum_probs=89.7
Q ss_pred EEECCChHHHHHHHHHHHc-----CCCeEEEecCCCC-CcccCCCCCCCeeeecCCccccCCCC----CC----------
Q 037065 21 IIVGAGPSGLAVSACLSQQ-----GLPSLILERSDCL-ASLWKHRTYDRLKLHLPKQFCELPLF----GF---------- 80 (412)
Q Consensus 21 vIIG~G~aGl~~A~~l~~~-----g~~v~vie~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~----~~---------- 80 (412)
+|||+|++|++++.+|.+. ..+|+|||+.+.. |+.|.....+...++.+...+..... .|
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 6999999999999999987 3589999997664 45776654555666666554443211 11
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHc------CCcc-cccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCC
Q 037065 81 ---PENFPKYPTKRQFIAYIESYASHF------KIQP-KFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGE 146 (412)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~ 146 (412)
......|+++..+-+|+++..+.. ++++ +...+|++++..+ +.|.+.+.+ ..+.+|.||+|||.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~--~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD--DGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC--CcEEEEECCCCEEEeCEEEECCCC
Confidence 112245889999999998776664 3333 4466899999887 567777766 78999999999993
No 98
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.31 E-value=1.3e-11 Score=113.09 Aligned_cols=129 Identities=17% Similarity=0.193 Sum_probs=84.9
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCC-----CCCeee-------e-cCCccccCC----CCCC
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRT-----YDRLKL-------H-LPKQFCELP----LFGF 80 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~-----~~~~~~-------~-~~~~~~~~~----~~~~ 80 (412)
+||+|||||++|+++|+.|++.|.+|+|+|+....+..+.... ...+.. . ....+.... ....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 6999999999999999999999999999999876543222110 000000 0 000000000 0011
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEc--ceEEEeCEEEEeeCCCC
Q 037065 81 PENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQ--DSEYISKWLVVATGENA 148 (412)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~--~~~~~~d~vIlAtG~~~ 148 (412)
+........+..+.+.+.+.+.+.+++++++++|+++..++ +.+.+... ..++++|+||+|+|.++
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEEEEEcCccEEEEeCEEEECCCcch
Confidence 11111235678888999998988999999999999998776 44444433 36899999999999644
No 99
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.29 E-value=8.2e-11 Score=111.44 Aligned_cols=34 Identities=15% Similarity=0.404 Sum_probs=32.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
++||+|||+|++|+++|+.|++.|.+|++||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5799999999999999999999999999999864
No 100
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.27 E-value=5.9e-11 Score=105.51 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=85.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc-ccCCCC-CCCeeeecC-CccccCCCCCCCCCCC--CCCCHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS-LWKHRT-YDRLKLHLP-KQFCELPLFGFPENFP--KYPTKR 91 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~-~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~ 91 (412)
.+||+|||||++|+++|+.|++.|++|+|+|+...+|+ .|.... ++.+....+ ..+..-.+.++..... ....+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 68999999999999999999999999999999987765 443321 111111100 0001111112111111 124567
Q ss_pred HHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEE------------cceEEEeCEEEEeeCCCC
Q 037065 92 QFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQT------------QDSEYISKWLVVATGENA 148 (412)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~------------~~~~~~~d~vIlAtG~~~ 148 (412)
++...+.+.+.+.+++++.+++|+++..+++....-+.. +..++.+++||+|||+++
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 888888888889999999999999987655311111211 115799999999999533
No 101
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.27 E-value=9.5e-11 Score=112.74 Aligned_cols=130 Identities=21% Similarity=0.245 Sum_probs=84.8
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc-------cCC---CCCCCeeeecC---------------C
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL-------WKH---RTYDRLKLHLP---------------K 70 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~-------~~~---~~~~~~~~~~~---------------~ 70 (412)
.++||+||||||+|+++|+.|++.|++|+|+|+.+..+.. +.. ..++.+....+ .
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEK 83 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence 3699999999999999999999999999999998654321 100 00110000000 0
Q ss_pred ccccCCCC--CC--CCCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEE-EEEcceEEEeCEEEEeeC
Q 037065 71 QFCELPLF--GF--PENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWR-VQTQDSEYISKWLVVATG 145 (412)
Q Consensus 71 ~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~d~vIlAtG 145 (412)
....+... .. +....-...+..+.+++.+.+++.+++++.+++|+++..++ +.+. +.+++.++.+|.||+|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g~~i~A~~VI~A~G 161 (428)
T PRK10157 84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADGDVIEAKTVILADG 161 (428)
T ss_pred CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCCcEEECCEEEEEeC
Confidence 00000000 00 00001124688899999999999999999999999988655 4443 444457899999999999
Q ss_pred CC
Q 037065 146 EN 147 (412)
Q Consensus 146 ~~ 147 (412)
.+
T Consensus 162 ~~ 163 (428)
T PRK10157 162 VN 163 (428)
T ss_pred CC
Confidence 53
No 102
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.26 E-value=7.1e-11 Score=112.51 Aligned_cols=128 Identities=16% Similarity=0.240 Sum_probs=83.0
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecC-C----CCCcccC-------------CCCCCCeeeecCCccccCCCCC
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERS-D----CLASLWK-------------HRTYDRLKLHLPKQFCELPLFG 79 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~-~----~~g~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 79 (412)
|||+||||||+|+++|+.|++.|++|+|+|+. + |.++... ...+.++.+..+.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 69999999999999999999999999999997 2 1111100 0111222222222100000001
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc---------eEEEeCEEEEeeCCCC
Q 037065 80 FPENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD---------SEYISKWLVVATGENA 148 (412)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---------~~~~~d~vIlAtG~~~ 148 (412)
....+.....+..+.+++.+.+.+.+++++.+ +|+++...+ +.+.++..+ .++.+|+||.|+|.++
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~--~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDR--DGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcC--CeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 01111113688899999999888889998654 688887766 566665542 4799999999999655
No 103
>PRK10015 oxidoreductase; Provisional
Probab=99.22 E-value=1.9e-10 Score=110.55 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=84.4
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCccc------CCC----CCCCeeeecC------CccccC----
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLW------KHR----TYDRLKLHLP------KQFCEL---- 75 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~------~~~----~~~~~~~~~~------~~~~~~---- 75 (412)
.++||+||||||+|+++|+.|++.|++|+|||+.+..|... ... ..+.+....+ ...+.+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE 83 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence 46899999999999999999999999999999986543210 000 0111100000 000000
Q ss_pred --CCCCCC-------CCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEE-EEEcceEEEeCEEEEeeC
Q 037065 76 --PLFGFP-------ENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWR-VQTQDSEYISKWLVVATG 145 (412)
Q Consensus 76 --~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~d~vIlAtG 145 (412)
....+. ........+..+.+++.+.+++.+++++.+++|+.+..++ +.+. +.+.+.++.+|.||+|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~~~i~A~~VI~AdG 161 (429)
T PRK10015 84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGDDILEANVVILADG 161 (429)
T ss_pred CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCCeEEECCEEEEccC
Confidence 000110 0001124678888999998999999999999999988755 4443 444557899999999999
Q ss_pred CC
Q 037065 146 EN 147 (412)
Q Consensus 146 ~~ 147 (412)
..
T Consensus 162 ~~ 163 (429)
T PRK10015 162 VN 163 (429)
T ss_pred cc
Confidence 53
No 104
>PRK06847 hypothetical protein; Provisional
Probab=99.21 E-value=3.7e-10 Score=107.25 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=87.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc------cCC--------C----------CCCCeeeecCC--
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL------WKH--------R----------TYDRLKLHLPK-- 70 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~------~~~--------~----------~~~~~~~~~~~-- 70 (412)
++||+|||||++|+++|+.|++.|++|+|+|+.+..... +.. . ....+....+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 679999999999999999999999999999998642210 000 0 01111111110
Q ss_pred ccccCCCCCCC-CCC--CCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCC
Q 037065 71 QFCELPLFGFP-ENF--PKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGE 146 (412)
Q Consensus 71 ~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~ 146 (412)
....++...+. ..+ .....+.++.+.+.+.+.+.+++++++++|++++..+ +.+.+.+.+ .++.+|.||.|+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD--DGVTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEEEEEcCCCEEEcCEEEECcCC
Confidence 00011100000 000 1235678888999988888899999999999998766 557777655 67999999999997
Q ss_pred CCC
Q 037065 147 NAE 149 (412)
Q Consensus 147 ~~~ 149 (412)
++.
T Consensus 162 ~s~ 164 (375)
T PRK06847 162 YSK 164 (375)
T ss_pred Ccc
Confidence 553
No 105
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.21 E-value=2.1e-10 Score=101.65 Aligned_cols=131 Identities=23% Similarity=0.260 Sum_probs=87.0
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC-cccCCCC-CCCeeeecC-CccccCCCCCCCCCCCC--CCCH
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA-SLWKHRT-YDRLKLHLP-KQFCELPLFGFPENFPK--YPTK 90 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g-~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~ 90 (412)
..+||+|||||++|+++|+.|++.|.+|+|+|++..+| +.|.... ++.+....+ ..+....+.++...... ...+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~ 99 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS 99 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence 36899999999999999999999999999999998875 4664321 222111111 11111122222211111 2356
Q ss_pred HHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcE-EEEEc------------ceEEEeCEEEEeeCC
Q 037065 91 RQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFW-RVQTQ------------DSEYISKWLVVATGE 146 (412)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~------------~~~~~~d~vIlAtG~ 146 (412)
.++.+.+...+.+.+++++.++.|+++..+++.... -+.+. ..+++++.||.|||.
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 788888888888899999999999998876531111 12221 157899999999994
No 106
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.21 E-value=1.1e-10 Score=111.33 Aligned_cols=128 Identities=18% Similarity=0.131 Sum_probs=86.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCC--CCC--------CCee----eecCCccccCCCCC---
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKH--RTY--------DRLK----LHLPKQFCELPLFG--- 79 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~--~~~--------~~~~----~~~~~~~~~~~~~~--- 79 (412)
++||+||||||||++||+.|++.|++|+|+|+....|..-.. ..+ +... -........++...
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~ 82 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAI 82 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEE
Confidence 689999999999999999999999999999998766641111 000 0000 00000001111000
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc--eEEEeCEEEEeeCC
Q 037065 80 -FPENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD--SEYISKWLVVATGE 146 (412)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~--~~~~~d~vIlAtG~ 146 (412)
.+....-...+..+.++|...+.+.+.+++.+++++.+..+++ .+.+.... .++++++||.|+|.
T Consensus 83 ~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~--~~~~~~~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 83 EVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDD--GVVVGVRAGDDEVRAKVVIDADGV 150 (396)
T ss_pred ecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCC--cEEEEEEcCCEEEEcCEEEECCCc
Confidence 0000011246889999999999999999999999999998773 33333333 69999999999995
No 107
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.9e-10 Score=95.25 Aligned_cols=130 Identities=22% Similarity=0.263 Sum_probs=86.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC-cccCCCC-CCCeeeecCCc-cccCCCCCCCCCCCCC--CCHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA-SLWKHRT-YDRLKLHLPKQ-FCELPLFGFPENFPKY--PTKR 91 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g-~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~ 91 (412)
..||+|||+||+||+||+.|++.|.+|+|+|++-.+| |.|...+ ++.+....|.. +.+--+.++.+.-.++ ....
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 4699999999999999999999999999999987775 4886653 44444444422 1122223332221212 2455
Q ss_pred HHHHHHHHHHHHcCCcccccceEEEEEEcCCC--CcEEEEE----------cceEEEeCEEEEeeCC
Q 037065 92 QFIAYIESYASHFKIQPKFKQAVQTALFDHAS--GFWRVQT----------QDSEYISKWLVVATGE 146 (412)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~v~~----------~~~~~~~d~vIlAtG~ 146 (412)
++..-+-..+-+.+++++....|+++-..++. ....+.. +--++++++||-|||+
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 66666666666678898888999998876642 1111111 1157899999999994
No 108
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.19 E-value=3.3e-10 Score=108.26 Aligned_cols=133 Identities=16% Similarity=0.170 Sum_probs=86.3
Q ss_pred cccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC----c--------------------ccCCC------CCCC
Q 037065 14 SVLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA----S--------------------LWKHR------TYDR 63 (412)
Q Consensus 14 ~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g----~--------------------~~~~~------~~~~ 63 (412)
+..++||+|||||++|+++|+.|+++|++|+|+|+.+... + .|..- .+..
T Consensus 3 ~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (392)
T PRK08773 3 RRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRR 82 (392)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccE
Confidence 3457899999999999999999999999999999975321 0 01000 0111
Q ss_pred eeeecCC--ccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCE
Q 037065 64 LKLHLPK--QFCELPLFGFP-ENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKW 139 (412)
Q Consensus 64 ~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~ 139 (412)
+...... ....+....+. ........+..+.+.+.+.+++.+++++++++|+++..++ +.+++++.+ .++.+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~a~~ 160 (392)
T PRK08773 83 MRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA--DRVRLRLDDGRRLEAAL 160 (392)
T ss_pred EEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEEEEECCCCEEEeCE
Confidence 1000000 00001000000 0001124567788888888888899999999999998766 567777665 6899999
Q ss_pred EEEeeCCCC
Q 037065 140 LVVATGENA 148 (412)
Q Consensus 140 vIlAtG~~~ 148 (412)
||.|+|.++
T Consensus 161 vV~AdG~~S 169 (392)
T PRK08773 161 AIAADGAAS 169 (392)
T ss_pred EEEecCCCc
Confidence 999999655
No 109
>PRK08244 hypothetical protein; Provisional
Probab=99.19 E-value=4e-10 Score=110.83 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=83.2
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc------ccCC--------C----------CCCCeeeecCCcc
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS------LWKH--------R----------TYDRLKLHLPKQF 72 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~------~~~~--------~----------~~~~~~~~~~~~~ 72 (412)
.+||+||||||+|+++|+.|++.|++|+|||+.+.... .+.. . .............
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 47999999999999999999999999999999864311 0000 0 0000100000000
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEc--c--eEEEeCEEEEeeCCCC
Q 037065 73 CELPLFGFPENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQ--D--SEYISKWLVVATGENA 148 (412)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~--~--~~~~~d~vIlAtG~~~ 148 (412)
..+........+.....+..+.+.+.+.+++.+++++++++|+++..++ +.++++.. + .++++|+||.|+|.++
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVEVVVRGPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence 0000000000011124567788888888888899999999999998766 44555543 2 4799999999999765
No 110
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.19 E-value=1.4e-10 Score=98.99 Aligned_cols=121 Identities=19% Similarity=0.255 Sum_probs=85.5
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCC------------------
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFG------------------ 79 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 79 (412)
.+|+|||+|++|+++|..|+..|.+|+|+||...+||.....+.+.-.++...+++.-..-.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 47999999999999999999999999999999999986655444444443333332211100
Q ss_pred -----C------CCC----CCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc--eEEEeCEEEE
Q 037065 80 -----F------PEN----FPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD--SEYISKWLVV 142 (412)
Q Consensus 80 -----~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~--~~~~~d~vIl 142 (412)
+ +.. +.+.+.-..+.+++-. ++++.++++|+.+...+ ..|++++++ +...+|.|||
T Consensus 82 ~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAt-----dL~V~~~~rVt~v~~~~--~~W~l~~~~g~~~~~~d~vvl 154 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLAT-----DLTVVLETRVTEVARTD--NDWTLHTDDGTRHTQFDDVVL 154 (331)
T ss_pred ccccccccCCCCCCCCCCccccCcchHHHHHHHhc-----cchhhhhhhhhhheecC--CeeEEEecCCCcccccceEEE
Confidence 0 000 1122333444454444 78888999999999886 789999966 7789999999
Q ss_pred eeC
Q 037065 143 ATG 145 (412)
Q Consensus 143 AtG 145 (412)
|.-
T Consensus 155 a~P 157 (331)
T COG3380 155 AIP 157 (331)
T ss_pred ecC
Confidence 876
No 111
>PLN02463 lycopene beta cyclase
Probab=99.17 E-value=3.1e-10 Score=108.78 Aligned_cols=129 Identities=19% Similarity=0.229 Sum_probs=84.5
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC-----cccCCCCCCCeee------ecCCccccCC--CCCCCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA-----SLWKHRTYDRLKL------HLPKQFCELP--LFGFPE 82 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g-----~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~ 82 (412)
..+||+||||||+|+++|..|++.|++|+|+|+.+... +.|... +..+.+ .-+.....+. ......
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~-l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~ 105 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDE-FEALGLLDCLDTTWPGAVVYIDDGKKKDLD 105 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHH-HHHCCcHHHHHhhCCCcEEEEeCCCCcccc
Confidence 36899999999999999999999999999999975321 222210 000000 0000000000 000000
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCC
Q 037065 83 NFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENA 148 (412)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~ 148 (412)
..-....+..+.+++.+.+...+++++ ..+|+++...+ +.+.|++++ .++.+|+||.|+|..+
T Consensus 106 ~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 106 RPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE--SKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred CcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC--CeEEEEECCCCEEEcCEEEECcCCCc
Confidence 001235788888989888888888886 56899998766 567788777 5899999999999643
No 112
>PRK08013 oxidoreductase; Provisional
Probab=99.17 E-value=4.1e-10 Score=107.73 Aligned_cols=131 Identities=18% Similarity=0.174 Sum_probs=84.2
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc-------------------------ccCCC------CCCCee
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS-------------------------LWKHR------TYDRLK 65 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~-------------------------~~~~~------~~~~~~ 65 (412)
.+||+||||||+|+++|+.|++.|++|+|+|+.+.... .|..- .+..+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 47999999999999999999999999999999864211 11100 011111
Q ss_pred eecCCcc--ccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEE
Q 037065 66 LHLPKQF--CELPLFGFPE-NFPKYPTKRQFIAYIESYASHF-KIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWL 140 (412)
Q Consensus 66 ~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~v 140 (412)
...+... ..+....... .......+..+.+.+.+.+... +++++++++|++++.++ +.+.++..+ .++++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~g~~i~a~lv 160 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE--NEAFLTLKDGSMLTARLV 160 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeEEEEEcCCCEEEeeEE
Confidence 1111000 0000000000 0001245777888887777775 78999999999998766 455666655 78999999
Q ss_pred EEeeCCCCC
Q 037065 141 VVATGENAE 149 (412)
Q Consensus 141 IlAtG~~~~ 149 (412)
|.|+|.+|.
T Consensus 161 VgADG~~S~ 169 (400)
T PRK08013 161 VGADGANSW 169 (400)
T ss_pred EEeCCCCcH
Confidence 999997553
No 113
>PRK06834 hypothetical protein; Provisional
Probab=99.17 E-value=7.1e-10 Score=108.26 Aligned_cols=130 Identities=21% Similarity=0.275 Sum_probs=85.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC-------cccCC--------CCCCCeeeec-C---Ccc--ccC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA-------SLWKH--------RTYDRLKLHL-P---KQF--CEL 75 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g-------~~~~~--------~~~~~~~~~~-~---~~~--~~~ 75 (412)
.+||+||||||+|+++|+.|++.|++|+|+|+.+... +.+.. ..++.+.-.. . ..+ ..+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 5799999999999999999999999999999976421 11110 0001100000 0 000 001
Q ss_pred CCCCCCC--CCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCC
Q 037065 76 PLFGFPE--NFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENA 148 (412)
Q Consensus 76 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~ 148 (412)
....++. .+.....+..+.+.+.+.+++.+++++++++|+++..++ +.+.++..+ .++.+|+||.|+|.++
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD--TGVDVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEEEEECCCCEEEeCEEEEecCCCC
Confidence 0001111 111224566778888888888899999999999998876 566676655 5899999999999755
No 114
>PRK07190 hypothetical protein; Provisional
Probab=99.16 E-value=5.9e-10 Score=108.67 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=84.1
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCC--------------CCCCC----------eeeecCC
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKH--------------RTYDR----------LKLHLPK 70 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~--------------~~~~~----------~~~~~~~ 70 (412)
...+||+||||||+|+++|+.|++.|++|+|||+.+.....-+. ..++. .......
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g 82 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANG 82 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCC
Confidence 34589999999999999999999999999999998643211000 00000 0000000
Q ss_pred ccccCCCC---CCCCC-C--CCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEe
Q 037065 71 QFCELPLF---GFPEN-F--PKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVA 143 (412)
Q Consensus 71 ~~~~~~~~---~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlA 143 (412)
.+...... ..... . .....+..+...+.+.+++.+++++++++|+++..++ +.+.+.+.+ +++.+++||.|
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~--~~v~v~~~~g~~v~a~~vVgA 160 (487)
T PRK07190 83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ--AGCLTTLSNGERIQSRYVIGA 160 (487)
T ss_pred ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeeEEEECCCcEEEeCEEEEC
Confidence 00000000 00000 0 0123456677788887888899999999999998876 455555544 68999999999
Q ss_pred eCCCC
Q 037065 144 TGENA 148 (412)
Q Consensus 144 tG~~~ 148 (412)
+|.++
T Consensus 161 DG~~S 165 (487)
T PRK07190 161 DGSRS 165 (487)
T ss_pred CCCCH
Confidence 99755
No 115
>PRK06184 hypothetical protein; Provisional
Probab=99.15 E-value=7.8e-10 Score=108.98 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=83.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc------ccCC------------------CCCCCeeeecCCc-
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS------LWKH------------------RTYDRLKLHLPKQ- 71 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~------~~~~------------------~~~~~~~~~~~~~- 71 (412)
++||+||||||+|+++|+.|++.|++|+|||+.+.... .+.. ..++.+.......
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 57999999999999999999999999999999864321 1100 0011111111000
Q ss_pred cccCC---------CCCCCCCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEE---cc-eEEEeC
Q 037065 72 FCELP---------LFGFPENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQT---QD-SEYISK 138 (412)
Q Consensus 72 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~---~~-~~~~~d 138 (412)
..... ..+++ ......+..+.+.+.+.+.+.+++++++++|++++.++ +.++++. .+ .++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~--~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~~~~~~~i~a~ 158 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYP--LPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA--DGVTARVAGPAGEETVRAR 158 (502)
T ss_pred EEEeeccccccCCCCCCCC--cceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC--CcEEEEEEeCCCeEEEEeC
Confidence 00000 00000 01123466677788888888899999999999998776 4555554 33 689999
Q ss_pred EEEEeeCCCC
Q 037065 139 WLVVATGENA 148 (412)
Q Consensus 139 ~vIlAtG~~~ 148 (412)
+||.|+|.+|
T Consensus 159 ~vVgADG~~S 168 (502)
T PRK06184 159 YLVGADGGRS 168 (502)
T ss_pred EEEECCCCch
Confidence 9999999766
No 116
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.15 E-value=4.8e-10 Score=106.28 Aligned_cols=130 Identities=15% Similarity=0.255 Sum_probs=85.4
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCC--------Cc---------------ccCC-----CCCCCeeeec
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCL--------AS---------------LWKH-----RTYDRLKLHL 68 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~--------g~---------------~~~~-----~~~~~~~~~~ 68 (412)
|+||+|||||++|+++|+.|++.|++|+|+|+.+.. .+ .|.. ..+..+....
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVD 80 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEE
Confidence 579999999999999999999999999999986311 10 1110 0111111111
Q ss_pred CCc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcC-CcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeC
Q 037065 69 PKQ--FCELPLFGFPENFPKYPTKRQFIAYIESYASHFK-IQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATG 145 (412)
Q Consensus 69 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG 145 (412)
... ...+.... .....-.+.+.++.+.+.+.+.+.+ ++++++++++++..++ +.+++..++.++.+|.||.|+|
T Consensus 81 ~~g~~~~~~~~~~-~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~~~~~adlvIgADG 157 (374)
T PRK06617 81 NKASEILDLRNDA-DAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN--DYSIIKFDDKQIKCNLLIICDG 157 (374)
T ss_pred CCCceEEEecCCC-CCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEEEEEcCCEEeeCEEEEeCC
Confidence 110 01111100 0001112568888888888777764 7788899999998766 5677777778999999999999
Q ss_pred CCCC
Q 037065 146 ENAE 149 (412)
Q Consensus 146 ~~~~ 149 (412)
.+|.
T Consensus 158 ~~S~ 161 (374)
T PRK06617 158 ANSK 161 (374)
T ss_pred CCch
Confidence 7654
No 117
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.14 E-value=6.3e-10 Score=106.80 Aligned_cols=130 Identities=20% Similarity=0.186 Sum_probs=85.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHcC--CCeEEEecCCCCCc--------ccCC--------CC----------CCCeeeec
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQG--LPSLILERSDCLAS--------LWKH--------RT----------YDRLKLHL 68 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~vie~~~~~g~--------~~~~--------~~----------~~~~~~~~ 68 (412)
++||+|||||++|+++|+.|++.| ++|+|+|+.+.... .+.. .. ...+....
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 579999999999999999999985 99999999764210 0000 00 01111100
Q ss_pred CCc-------cccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCE
Q 037065 69 PKQ-------FCELPLFG-FPENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKW 139 (412)
Q Consensus 69 ~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~ 139 (412)
... ...+.... ....+.....+..+.+.+.+.+.+.+++++++++|++++.++ +.+.+++.+ .++.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~ 158 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD--EGVTVTLSDGSVLEARL 158 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEEEEECCCCEEEeCE
Confidence 000 00000000 000011135678888999888888899999999999998766 566777655 6799999
Q ss_pred EEEeeCCCC
Q 037065 140 LVVATGENA 148 (412)
Q Consensus 140 vIlAtG~~~ 148 (412)
||.|+|.++
T Consensus 159 vI~AdG~~S 167 (403)
T PRK07333 159 LVAADGARS 167 (403)
T ss_pred EEEcCCCCh
Confidence 999999654
No 118
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.13 E-value=4.1e-10 Score=108.08 Aligned_cols=131 Identities=18% Similarity=0.175 Sum_probs=83.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC--------------cccCC--------CCCCCe----------
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA--------------SLWKH--------RTYDRL---------- 64 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g--------------~~~~~--------~~~~~~---------- 64 (412)
.+||+|||||++|+++|+.|++.|++|+|+|+.+... ..+.. ..++.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 4799999999999999999999999999999976210 00000 001111
Q ss_pred -eeecCCcc--ccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCE
Q 037065 65 -KLHLPKQF--CELPLFGFP-ENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKW 139 (412)
Q Consensus 65 -~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~ 139 (412)
........ ..+...... ........+..+.+.+.+.+.+.+++++++++|++++..+ +.+++++.+ .++.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~g~~~~a~~ 159 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSG--DDWLLTLADGRQLRAPL 159 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEEEEECCCCEEEeCE
Confidence 11000000 000000000 0001123456677777776777789999999999998766 567777766 6899999
Q ss_pred EEEeeCCCCC
Q 037065 140 LVVATGENAE 149 (412)
Q Consensus 140 vIlAtG~~~~ 149 (412)
||.|+|.++.
T Consensus 160 vVgAdG~~S~ 169 (405)
T PRK05714 160 VVAADGANSA 169 (405)
T ss_pred EEEecCCCch
Confidence 9999997653
No 119
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.12 E-value=7.6e-10 Score=105.35 Aligned_cols=130 Identities=21% Similarity=0.231 Sum_probs=86.2
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecC-CCCCcccCC-------------------------CCCCCeeeecCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERS-DCLASLWKH-------------------------RTYDRLKLHLPK 70 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~-~~~g~~~~~-------------------------~~~~~~~~~~~~ 70 (412)
++||+|||||++|+++|+.|++.|++|+|||+. ..+-..-+. ..+.........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 579999999999999999999999999999997 211100000 001111111111
Q ss_pred -ccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcC-CcccccceEEEEEEcCCCCcEEEEEc-c-eEEEeCEEEEeeC
Q 037065 71 -QFCELPLFGFPE-NFPKYPTKRQFIAYIESYASHFK-IQPKFKQAVQTALFDHASGFWRVQTQ-D-SEYISKWLVVATG 145 (412)
Q Consensus 71 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~-~-~~~~~d~vIlAtG 145 (412)
....+....... .......+..+.+.+.+.+...+ ++++++++|+.++.++ +.+.++.. + +++.+|+||.|.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVTVTLSFDGETLDADLLVGADG 159 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceEEEEcCCCcEEecCEEEECCC
Confidence 011111111111 11122568888899988888775 8999999999999988 45556665 5 7899999999999
Q ss_pred CCC
Q 037065 146 ENA 148 (412)
Q Consensus 146 ~~~ 148 (412)
.+|
T Consensus 160 ~~S 162 (387)
T COG0654 160 ANS 162 (387)
T ss_pred Cch
Confidence 765
No 120
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.11 E-value=7e-10 Score=105.98 Aligned_cols=133 Identities=19% Similarity=0.249 Sum_probs=84.1
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC-------------------------cccCCC------CCCC
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA-------------------------SLWKHR------TYDR 63 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g-------------------------~~~~~~------~~~~ 63 (412)
...+||+|||||++|+++|+.|++.|++|+|+|+.+... |.|... .+..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRR 82 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccce
Confidence 346899999999999999999999999999999875211 011110 0001
Q ss_pred eeee-cCCccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCE
Q 037065 64 LKLH-LPKQFCELPLFGFPE-NFPKYPTKRQFIAYIESYASHF-KIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKW 139 (412)
Q Consensus 64 ~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~ 139 (412)
+... .......+....... .......+..+.+.+.+.+... +++++++++|+++...+ +.+.+.+.+ .++++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g~~~~a~~ 160 (391)
T PRK08020 83 LETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDD--DGWELTLADGEEIQAKL 160 (391)
T ss_pred EEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--CeEEEEECCCCEEEeCE
Confidence 1000 000000000000000 0011245677777777766666 88888899999998766 567777766 5899999
Q ss_pred EEEeeCCCCC
Q 037065 140 LVVATGENAE 149 (412)
Q Consensus 140 vIlAtG~~~~ 149 (412)
||.|+|.++.
T Consensus 161 vI~AdG~~S~ 170 (391)
T PRK08020 161 VIGADGANSQ 170 (391)
T ss_pred EEEeCCCCch
Confidence 9999997553
No 121
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.11 E-value=6.6e-10 Score=92.75 Aligned_cols=129 Identities=18% Similarity=0.194 Sum_probs=78.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc-ccCCC-CCCCeeeecCCcc-ccCCCCCCCCCCCC--CCCHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS-LWKHR-TYDRLKLHLPKQF-CELPLFGFPENFPK--YPTKR 91 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~ 91 (412)
.+||+||||||+||++|..|++.|++|++||++..+|| .|... .++.+....+... .+--+.++.+...+ .....
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 68999999999999999999999999999999987765 77654 4566666655322 11112222211111 13566
Q ss_pred HHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcE---EEEEc----------ceEEEeCEEEEeeCC
Q 037065 92 QFIAYIESYASHFKIQPKFKQAVQTALFDHASGFW---RVQTQ----------DSEYISKWLVVATGE 146 (412)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~---~v~~~----------~~~~~~d~vIlAtG~ 146 (412)
++...|-..+-+.+++++-...|+++-..++ .++ .+... --++++++||-|||+
T Consensus 97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 7777776666668999988888998877663 222 22221 158999999999994
No 122
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.11 E-value=8.5e-10 Score=105.30 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=83.8
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCC----Ceee-----ecCCc--cccCCCCCCCCCCC-C
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYD----RLKL-----HLPKQ--FCELPLFGFPENFP-K 86 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~----~~~~-----~~~~~--~~~~~~~~~~~~~~-~ 86 (412)
||+|||||++|+++|..|++.|++|+|+|+.+..++......+. .+.+ +.-.. .+..+......... .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 79999999999999999999999999999988766522111111 1100 00000 00001110000001 1
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCC
Q 037065 87 YPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENA 148 (412)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~ 148 (412)
...+..+.+++.+.+.+.+++++ ..+|+.+..... +.+.+++++ .++++++||.|+|.++
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~-~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGV-ALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCC-ceeEEEeCCCCEEEeCEEEECCCCch
Confidence 25678889999888888888875 557888876532 567777776 5899999999999654
No 123
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.11 E-value=9.3e-10 Score=105.03 Aligned_cols=134 Identities=17% Similarity=0.250 Sum_probs=83.9
Q ss_pred ccccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc------------------ccCCC-----CCCCeeeecC
Q 037065 13 KSVLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS------------------LWKHR-----TYDRLKLHLP 69 (412)
Q Consensus 13 ~~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~------------------~~~~~-----~~~~~~~~~~ 69 (412)
|.+..+||+|||||++|+++|+.|++.|++|+|||+.+.... .|..- .+..+.....
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 82 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDA 82 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeC
Confidence 344468999999999999999999999999999999864321 11100 0111111111
Q ss_pred Cc-cccCCCCCCC-----C-CCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEE
Q 037065 70 KQ-FCELPLFGFP-----E-NFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLV 141 (412)
Q Consensus 70 ~~-~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vI 141 (412)
.. ....+...+. . .+.-...+..+.+.+.+.+.+++...+++++|+++..++ +.+.+++++ .++.+|.||
T Consensus 83 ~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~~~g~~~~a~~vI 160 (388)
T PRK07494 83 TGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPRE--DEVTVTLADGTTLSARLVV 160 (388)
T ss_pred CCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeEEEEECCCCEEEEeEEE
Confidence 00 0000000000 0 001124567777888777776643337799999998766 667777766 679999999
Q ss_pred EeeCCCC
Q 037065 142 VATGENA 148 (412)
Q Consensus 142 lAtG~~~ 148 (412)
.|+|.++
T Consensus 161 ~AdG~~S 167 (388)
T PRK07494 161 GADGRNS 167 (388)
T ss_pred EecCCCc
Confidence 9999654
No 124
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.11 E-value=2.4e-09 Score=106.40 Aligned_cols=132 Identities=22% Similarity=0.257 Sum_probs=84.8
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCC--------------C----------CCCCeeeecCC-
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKH--------------R----------TYDRLKLHLPK- 70 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~--------------~----------~~~~~~~~~~~- 70 (412)
..+||+||||||+|+++|+.|++.|++|+|+|+.+......+. . ....+......
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence 3689999999999999999999999999999998654321100 0 01111111110
Q ss_pred -ccccCCC-CCCCCCCC--CCCCHHHHHHHHHHHHHHc-CCcccccceEEEEEEcCCCCcEEEEEc---c--eEEEeCEE
Q 037065 71 -QFCELPL-FGFPENFP--KYPTKRQFIAYIESYASHF-KIQPKFKQAVQTALFDHASGFWRVQTQ---D--SEYISKWL 140 (412)
Q Consensus 71 -~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~---~--~~~~~d~v 140 (412)
....+.. ......++ ....+..+.+.+.+.+.+. +++++++++|++++.++ +.++++.. + .++++|+|
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~--~~v~v~~~~~~G~~~~i~ad~v 166 (538)
T PRK06183 89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD--DGVTVTLTDADGQRETVRARYV 166 (538)
T ss_pred CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC--CeEEEEEEcCCCCEEEEEEEEE
Confidence 0111110 00000111 1235566777777777665 89999999999999877 55666654 2 57999999
Q ss_pred EEeeCCCCC
Q 037065 141 VVATGENAE 149 (412)
Q Consensus 141 IlAtG~~~~ 149 (412)
|.|+|.+|.
T Consensus 167 VgADG~~S~ 175 (538)
T PRK06183 167 VGCDGANSF 175 (538)
T ss_pred EecCCCchh
Confidence 999997653
No 125
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.09 E-value=2.4e-09 Score=103.21 Aligned_cols=132 Identities=18% Similarity=0.246 Sum_probs=80.5
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc--------ccCC--------CCCCCe----------eeecC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS--------LWKH--------RTYDRL----------KLHLP 69 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~--------~~~~--------~~~~~~----------~~~~~ 69 (412)
..+||+|||||++|+++|+.|++.|++|+|+|+.+.... .+.. ..++.+ .....
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 368999999999999999999999999999999865321 0000 000000 00000
Q ss_pred C--ccccCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHc-CCcccccceEEEEEEcCCCCcEEEEEc--c--eEEEeCEEE
Q 037065 70 K--QFCELPLFGFPENFPKY-PTKRQFIAYIESYASHF-KIQPKFKQAVQTALFDHASGFWRVQTQ--D--SEYISKWLV 141 (412)
Q Consensus 70 ~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~--~--~~~~~d~vI 141 (412)
. ....+...........+ .....+.+.+.+.+.+. +++++++++|++++.++ +.+.++.. + .++.+|+||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~v~~~~~~~~~~i~adlvI 174 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAATVTLEIEGKQQTLQSKLVV 174 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeeEEEEccCCcceEEeeeEEE
Confidence 0 00001100000000011 22345667776666654 68889999999998766 55666654 2 469999999
Q ss_pred EeeCCCCC
Q 037065 142 VATGENAE 149 (412)
Q Consensus 142 lAtG~~~~ 149 (412)
.|+|.++.
T Consensus 175 gADG~~S~ 182 (415)
T PRK07364 175 AADGARSP 182 (415)
T ss_pred EeCCCCch
Confidence 99997553
No 126
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.08 E-value=4.2e-10 Score=105.95 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=79.3
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCC----------------------CC--CC--CeeeecC--
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKH----------------------RT--YD--RLKLHLP-- 69 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~----------------------~~--~~--~~~~~~~-- 69 (412)
+||+|||||++|+++|+.|+++|++|+|||+.+........ .. .. .......
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 68999999999999999999999999999998643211000 00 00 0000000
Q ss_pred ---------CccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc----eEEE
Q 037065 70 ---------KQFCELPLFGFPENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD----SEYI 136 (412)
Q Consensus 70 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~----~~~~ 136 (412)
.....+. ............+..+.+.|.+.+++.++++.++++|+++..+.+.....+.... .+++
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ 160 (356)
T PF01494_consen 82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIE 160 (356)
T ss_dssp TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEE
T ss_pred Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEE
Confidence 0000000 0000000112457889999999999889999999999999887732222233221 4799
Q ss_pred eCEEEEeeCCCC
Q 037065 137 SKWLVVATGENA 148 (412)
Q Consensus 137 ~d~vIlAtG~~~ 148 (412)
+|.||.|.|.+|
T Consensus 161 adlvVgADG~~S 172 (356)
T PF01494_consen 161 ADLVVGADGAHS 172 (356)
T ss_dssp ESEEEE-SGTT-
T ss_pred EeeeecccCccc
Confidence 999999999755
No 127
>PRK07045 putative monooxygenase; Reviewed
Probab=99.08 E-value=2.3e-09 Score=102.33 Aligned_cols=131 Identities=17% Similarity=0.199 Sum_probs=83.5
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC---c---ccCC--------CCC-----------CCeeeecCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA---S---LWKH--------RTY-----------DRLKLHLPK 70 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g---~---~~~~--------~~~-----------~~~~~~~~~ 70 (412)
..+||+||||||+|+++|+.|++.|++|+|+|+.+... + .+.. ... ..+......
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 35799999999999999999999999999999987541 1 1111 000 001110000
Q ss_pred ccccCCCCCCCC----CCCCCCCHHHHHHHHHHHHH-HcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEee
Q 037065 71 QFCELPLFGFPE----NFPKYPTKRQFIAYIESYAS-HFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVAT 144 (412)
Q Consensus 71 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAt 144 (412)
.. ....++.. .+.....+..+.+.+.+.+. ..+++++++++|+++...++...+.++..+ .++.+|+||.|+
T Consensus 84 ~~--~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgAD 161 (388)
T PRK07045 84 EL--IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGAD 161 (388)
T ss_pred cE--EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECC
Confidence 00 00011111 11112356777787776654 457889999999999887643334566655 689999999999
Q ss_pred CCCC
Q 037065 145 GENA 148 (412)
Q Consensus 145 G~~~ 148 (412)
|.++
T Consensus 162 G~~S 165 (388)
T PRK07045 162 GARS 165 (388)
T ss_pred CCCh
Confidence 9755
No 128
>PRK06185 hypothetical protein; Provisional
Probab=99.08 E-value=1.6e-09 Score=104.06 Aligned_cols=134 Identities=19% Similarity=0.328 Sum_probs=83.0
Q ss_pred ccccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC-----c--------------ccCCC---C---CCCeeee
Q 037065 13 KSVLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA-----S--------------LWKHR---T---YDRLKLH 67 (412)
Q Consensus 13 ~~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g-----~--------------~~~~~---~---~~~~~~~ 67 (412)
|....+||+|||||++|+++|+.|++.|++|+|+|+.+... . .|..- . ...+...
T Consensus 2 ~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~ 81 (407)
T PRK06185 2 AEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFE 81 (407)
T ss_pred CccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEE
Confidence 33457899999999999999999999999999999975421 1 11110 0 0011110
Q ss_pred cCCc-c--ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCcccccceEEEEEEcCCCCcE---EEEEcc--eEEEeC
Q 037065 68 LPKQ-F--CELPLFGFPENFPKYPTKRQFIAYIESYASHF-KIQPKFKQAVQTALFDHASGFW---RVQTQD--SEYISK 138 (412)
Q Consensus 68 ~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~---~v~~~~--~~~~~d 138 (412)
.... . ..+.....+..+........+.+.+.+.+.+. +++++++++|+++..++ +.+ .+...+ .++.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~a~ 159 (407)
T PRK06185 82 IGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIRAD 159 (407)
T ss_pred ECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEEeC
Confidence 0000 0 01111111111112356677888887777664 78999999999998765 332 233323 479999
Q ss_pred EEEEeeCCCC
Q 037065 139 WLVVATGENA 148 (412)
Q Consensus 139 ~vIlAtG~~~ 148 (412)
.||.|+|.++
T Consensus 160 ~vI~AdG~~S 169 (407)
T PRK06185 160 LVVGADGRHS 169 (407)
T ss_pred EEEECCCCch
Confidence 9999999765
No 129
>PLN02697 lycopene epsilon cyclase
Probab=99.06 E-value=1.9e-09 Score=105.03 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=82.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC---cccCCCCCCCeeeec------CCccccCCCC-CC-CCCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA---SLWKHRTYDRLKLHL------PKQFCELPLF-GF-PENFP 85 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g---~~~~~~~~~~~~~~~------~~~~~~~~~~-~~-~~~~~ 85 (412)
++||+||||||+|+++|..|++.|++|+++|+....+ |.|... +..+.+.. +.....++.. .. ....-
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 6899999999999999999999999999999864332 344321 11111100 0000000000 00 00001
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEE-EEEc-ceEEEeCEEEEeeCCCC
Q 037065 86 KYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWR-VQTQ-DSEYISKWLVVATGENA 148 (412)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~-~~~~~~d~vIlAtG~~~ 148 (412)
..+.+..+.+.+.+.+.+.++++ ++++|+.+...+ +.+. +.+. +.++.++.||+|+|.++
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~--~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS--DGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC--CcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 12678888899988888888887 577899988765 3333 2333 47899999999999766
No 130
>PRK11445 putative oxidoreductase; Provisional
Probab=99.05 E-value=2.9e-09 Score=99.92 Aligned_cols=128 Identities=15% Similarity=0.236 Sum_probs=80.4
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC---------c-ccCC--------CCC-CCeeeecCCccccCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA---------S-LWKH--------RTY-DRLKLHLPKQFCELPL 77 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g---------~-~~~~--------~~~-~~~~~~~~~~~~~~~~ 77 (412)
|+||+||||||+|+++|..|++. ++|+|+|+.+..+ + .+.. ... +......+. .+....
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~-~~~~~~ 78 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQ-IFAVKT 78 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccc-cceeeE
Confidence 57999999999999999999999 9999999886321 1 1110 000 000000000 000000
Q ss_pred CCCC----CCC--CC-CCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEE-cc---eEEEeCEEEEeeCC
Q 037065 78 FGFP----ENF--PK-YPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQT-QD---SEYISKWLVVATGE 146 (412)
Q Consensus 78 ~~~~----~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~-~~---~~~~~d~vIlAtG~ 146 (412)
..+. ..+ .. ...+.++.+.+.+. ...++++++++.|+.+...+ +.|.+.. .+ .++++|+||.|+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~~g~~~~i~a~~vV~AdG~ 155 (351)
T PRK11445 79 IDLANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWRED--DGYHVIFRADGWEQHITARYLVGADGA 155 (351)
T ss_pred ecccccchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcC--CEEEEEEecCCcEEEEEeCEEEECCCC
Confidence 0000 000 11 26688888888774 45678899999999998766 5677765 23 37899999999996
Q ss_pred CCC
Q 037065 147 NAE 149 (412)
Q Consensus 147 ~~~ 149 (412)
.+.
T Consensus 156 ~S~ 158 (351)
T PRK11445 156 NSM 158 (351)
T ss_pred CcH
Confidence 553
No 131
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.05 E-value=1.3e-09 Score=104.45 Aligned_cols=132 Identities=18% Similarity=0.215 Sum_probs=83.7
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc------cCC--------CCCC----------CeeeecC---
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL------WKH--------RTYD----------RLKLHLP--- 69 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~------~~~--------~~~~----------~~~~~~~--- 69 (412)
..||+|||||++|+++|..|++.|++|+|+|+.+..+.. +.. ...+ .+.....
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 468999999999999999999999999999998754321 100 0000 0000000
Q ss_pred CccccCCCC-CCCCCC--C-CCCCHHHHHHHHHHHHHHc-CCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEe
Q 037065 70 KQFCELPLF-GFPENF--P-KYPTKRQFIAYIESYASHF-KIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVA 143 (412)
Q Consensus 70 ~~~~~~~~~-~~~~~~--~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlA 143 (412)
.....++.. .+...+ + ....+.++.+.+.+.+.+. +++++++++|+++..++ +.+.+...+ .++.+|.||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~vV~A 161 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVTVFDQQGNRWTGDALIGC 161 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceEEEEcCCCEEecCEEEEC
Confidence 000000000 000000 0 1246777888887777665 48889999999998765 556677665 67999999999
Q ss_pred eCCCCCC
Q 037065 144 TGENAEP 150 (412)
Q Consensus 144 tG~~~~p 150 (412)
+|.++..
T Consensus 162 dG~~S~~ 168 (396)
T PRK08163 162 DGVKSVV 168 (396)
T ss_pred CCcChHH
Confidence 9976543
No 132
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.05 E-value=3.1e-09 Score=102.44 Aligned_cols=133 Identities=13% Similarity=0.166 Sum_probs=82.0
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCC-----CCcccCC-------------CCCCCeeeecCCcc-ccC
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDC-----LASLWKH-------------RTYDRLKLHLPKQF-CEL 75 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~-----~g~~~~~-------------~~~~~~~~~~~~~~-~~~ 75 (412)
..++||+||||||+|+++|..|++.|++|+|+|+... .++.... .....+.+..+... ..+
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~ 116 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDI 116 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEe
Confidence 3478999999999999999999999999999998742 1211000 00111111111110 000
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCC-CCcEEEEEc--------c--eEEEeCEEEEee
Q 037065 76 PLFGFPENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHA-SGFWRVQTQ--------D--SEYISKWLVVAT 144 (412)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~v~~~--------~--~~~~~d~vIlAt 144 (412)
.....+..+-....+..+.+++.+.+.+.+++++.+ .+++++...+ .+.+.+++. + .++.+|.||.|+
T Consensus 117 ~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgAD 195 (450)
T PLN00093 117 GKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGAD 195 (450)
T ss_pred cccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcC
Confidence 000000000112688999999999999999998755 5777765322 234555542 2 579999999999
Q ss_pred CCCC
Q 037065 145 GENA 148 (412)
Q Consensus 145 G~~~ 148 (412)
|..+
T Consensus 196 G~~S 199 (450)
T PLN00093 196 GANS 199 (450)
T ss_pred Ccch
Confidence 9644
No 133
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.04 E-value=2.4e-09 Score=102.12 Aligned_cols=128 Identities=20% Similarity=0.267 Sum_probs=85.6
Q ss_pred EEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCC-----------CCCeeeec---CCc----cccC-------
Q 037065 21 IIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRT-----------YDRLKLHL---PKQ----FCEL------- 75 (412)
Q Consensus 21 vIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~-----------~~~~~~~~---~~~----~~~~------- 75 (412)
+|||||++|+++|+.|++.|.+|+|+|+.+.+|+.+...- ...+.... +.. +..+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 5999999999999999999999999999987775321100 00000000 000 0000
Q ss_pred ----CCCCCC--C---CCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCC
Q 037065 76 ----PLFGFP--E---NFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGE 146 (412)
Q Consensus 76 ----~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~ 146 (412)
.+.++. . .++.......+.+.+.+.+++.++++++++.|+++...+ +.|.+++++.++.+|+||+|+|.
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~~v~~~~~~i~ad~VIlAtG~ 158 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NGFGVETSGGEYEADKVILATGG 158 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--CeEEEEECCcEEEcCEEEECCCC
Confidence 000000 0 011112457788888888999999999999999997755 56777776678999999999997
Q ss_pred CCCC
Q 037065 147 NAEP 150 (412)
Q Consensus 147 ~~~p 150 (412)
.+.|
T Consensus 159 ~s~p 162 (400)
T TIGR00275 159 LSYP 162 (400)
T ss_pred cccC
Confidence 6654
No 134
>PRK06753 hypothetical protein; Provisional
Probab=99.04 E-value=2.9e-09 Score=101.06 Aligned_cols=125 Identities=18% Similarity=0.188 Sum_probs=79.9
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc------cCC------------------CCCCCeeeecCCcccc
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL------WKH------------------RTYDRLKLHLPKQFCE 74 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~------~~~------------------~~~~~~~~~~~~~~~~ 74 (412)
||+|||||++|+++|+.|++.|++|+|+|+.+..... +.. .....+....+... .
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~-~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT-L 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-E
Confidence 7999999999999999999999999999998753211 000 00111111111000 0
Q ss_pred CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCC
Q 037065 75 LPLFGFPEN-FPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENA 148 (412)
Q Consensus 75 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~ 148 (412)
+...++... ......+..+.+.+.+.+. ..+++++++|++++.++ +.+++++++ .++.+|.||.|.|.++
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENET--DKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecC--CcEEEEECCCCEEecCEEEECCCcch
Confidence 000111100 0112567777777776554 34678899999998765 667777766 6789999999999655
No 135
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.04 E-value=2.7e-09 Score=100.92 Aligned_cols=125 Identities=22% Similarity=0.236 Sum_probs=80.6
Q ss_pred CeEEECCChHHHHHHHHH--HHcCCCeEEEecCCCC--Cc--ccCCCC-----CCCeeeec-CCccccCCCCCC-CCCCC
Q 037065 19 GPIIVGAGPSGLAVSACL--SQQGLPSLILERSDCL--AS--LWKHRT-----YDRLKLHL-PKQFCELPLFGF-PENFP 85 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l--~~~g~~v~vie~~~~~--g~--~~~~~~-----~~~~~~~~-~~~~~~~~~~~~-~~~~~ 85 (412)
||+|||||+||+++|.+| ++.|.+|+|||+.... +. +|.... +..+.... +.....++.... ....+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 6679999999998766 22 332210 00000000 000000111100 00001
Q ss_pred -CCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCC
Q 037065 86 -KYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGE 146 (412)
Q Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~ 146 (412)
..+.+..+.+++.+.+...+ ..+.+++|++|+..+ ..+.+.+++ .+++++.||.|+|.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~--~~~~v~~~~g~~i~a~~VvDa~g~ 140 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETG--DGVLVVLADGRTIRARVVVDARGP 140 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecC--ceEEEEECCCCEEEeeEEEECCCc
Confidence 13678889999988887444 556788999999877 455566666 68999999999994
No 136
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.04 E-value=2.9e-09 Score=101.69 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=82.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc---ccCC----------------CCCCCeeee--cCCccccC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS---LWKH----------------RTYDRLKLH--LPKQFCEL 75 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~---~~~~----------------~~~~~~~~~--~~~~~~~~ 75 (412)
.+||+|||||++|+++|+.|++.|++|+|+|+.+.... .|.. ...+.+... .+.....+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 57999999999999999999999999999999865421 1211 000000000 00000000
Q ss_pred -----CCCCCC---CCCC---CCCCHHHHHHHHHHHHHHcC-CcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEE
Q 037065 76 -----PLFGFP---ENFP---KYPTKRQFIAYIESYASHFK-IQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVV 142 (412)
Q Consensus 76 -----~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIl 142 (412)
....+. ...+ ....+..+.+.+.+.+++.+ ++++ +.+|+++...+ +.+.+++.+ .++.+|+||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~v~~~~g~~~~a~~vI~ 161 (388)
T PRK07608 85 FGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDP--DAATLTLADGQVLRADLVVG 161 (388)
T ss_pred EECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeEEEEECCCCEEEeeEEEE
Confidence 000000 0001 01346778888877777776 7777 88899988766 567777766 5799999999
Q ss_pred eeCCCCC
Q 037065 143 ATGENAE 149 (412)
Q Consensus 143 AtG~~~~ 149 (412)
|+|.++.
T Consensus 162 adG~~S~ 168 (388)
T PRK07608 162 ADGAHSW 168 (388)
T ss_pred eCCCCch
Confidence 9997553
No 137
>PRK05868 hypothetical protein; Validated
Probab=99.03 E-value=5.7e-09 Score=98.71 Aligned_cols=130 Identities=13% Similarity=0.102 Sum_probs=79.4
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc------ccCC------------------CCCCCeeeecCCcc
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS------LWKH------------------RTYDRLKLHLPKQF 72 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~------~~~~------------------~~~~~~~~~~~~~~ 72 (412)
|.||+|||||++|+++|+.|++.|++|+|+|+.+.... .+.. .....+....+...
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 80 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN 80 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC
Confidence 46899999999999999999999999999999864421 0000 00111111111100
Q ss_pred --ccCCC-CCCCCCC--CC-CCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeC
Q 037065 73 --CELPL-FGFPENF--PK-YPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATG 145 (412)
Q Consensus 73 --~~~~~-~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG 145 (412)
..... .+..... .. ...+.++.+.+.+. ...+++++++++|++++.++ +.++++..+ .++.+|.||.|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~-~~~~v~i~~~~~v~~i~~~~--~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGA-TQPSVEYLFDDSISTLQDDG--DSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHHh-ccCCcEEEeCCEEEEEEecC--CeEEEEECCCCeEEeCEEEECCC
Confidence 00000 0000000 00 12345555555442 23578899999999998765 566777766 7899999999999
Q ss_pred CCCC
Q 037065 146 ENAE 149 (412)
Q Consensus 146 ~~~~ 149 (412)
.+|.
T Consensus 158 ~~S~ 161 (372)
T PRK05868 158 LHSN 161 (372)
T ss_pred CCch
Confidence 7663
No 138
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.03 E-value=9.6e-10 Score=103.56 Aligned_cols=61 Identities=21% Similarity=0.220 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEE-EEEcceEEEeCEEEEeeCCCCCC
Q 037065 88 PTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWR-VQTQDSEYISKWLVVATGENAEP 150 (412)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~~d~vIlAtG~~~~p 150 (412)
.....+.+.+.+.+++.|++++.+++|+++..++ +.|+ |.+.++.+.+|+||+|+|.++..
T Consensus 144 i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~g~i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTSDGEIRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEETTEEEEECEEEE--GGGHHH
T ss_pred ccccchhhhhHHHHHHhhhhccccccccchhhcc--cccccccccccccccceeEeccccccee
Confidence 4578889999999999999999999999999988 7787 99999889999999999975533
No 139
>PRK06126 hypothetical protein; Provisional
Probab=99.02 E-value=5.8e-09 Score=103.96 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=82.0
Q ss_pred cccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCC--------------CCCCCe--------------e
Q 037065 14 SVLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKH--------------RTYDRL--------------K 65 (412)
Q Consensus 14 ~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~--------------~~~~~~--------------~ 65 (412)
....+||+|||||++|+++|+.|+++|++|+|+|+.+.....-.. ...+.+ .
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~ 83 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAY 83 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceE
Confidence 344689999999999999999999999999999998632210000 000000 0
Q ss_pred eec--CCccccCCCCC------C--------CC-CCCCCCCHHHHHHHHHHHHHHc-CCcccccceEEEEEEcCCCCcEE
Q 037065 66 LHL--PKQFCELPLFG------F--------PE-NFPKYPTKRQFIAYIESYASHF-KIQPKFKQAVQTALFDHASGFWR 127 (412)
Q Consensus 66 ~~~--~~~~~~~~~~~------~--------~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~ 127 (412)
... ......+.... + .. ......++..+.+.+.+.+.+. +++++++++|++++.++ +.++
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~ 161 (545)
T PRK06126 84 FTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DGVT 161 (545)
T ss_pred EecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECC--CeEE
Confidence 000 00000000000 0 00 0011245667777887777654 78999999999998876 4444
Q ss_pred EEEcc------eEEEeCEEEEeeCCCC
Q 037065 128 VQTQD------SEYISKWLVVATGENA 148 (412)
Q Consensus 128 v~~~~------~~~~~d~vIlAtG~~~ 148 (412)
++..+ .++.+|+||.|+|.++
T Consensus 162 v~~~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 162 ATVEDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred EEEEECCCCcEEEEEEEEEEecCCcch
Confidence 44322 4789999999999765
No 140
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.02 E-value=2.7e-09 Score=101.78 Aligned_cols=128 Identities=17% Similarity=0.181 Sum_probs=83.0
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc-----------ccCC--------CCCCCee-----------eec
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS-----------LWKH--------RTYDRLK-----------LHL 68 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~-----------~~~~--------~~~~~~~-----------~~~ 68 (412)
||+|||||++|+++|..|+++|++|+|+|+.+..+. .+.. ..++.+. ...
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 799999999999999999999999999999975321 0000 0011110 000
Q ss_pred CCc--cccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcC-CcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEe
Q 037065 69 PKQ--FCELPLFGFPE-NFPKYPTKRQFIAYIESYASHFK-IQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVA 143 (412)
Q Consensus 69 ~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlA 143 (412)
... ...+....... .....+.+..+.+.+.+.+.+.+ ++++++++|++++..+ +.+.+++.+ .++.+|.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS--DHVELTLDDGQQLRARLLVGA 158 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeEEEECCCCEEEeeEEEEe
Confidence 000 00000000000 00112456778888888887777 8899999999998766 566777666 67999999999
Q ss_pred eCCCC
Q 037065 144 TGENA 148 (412)
Q Consensus 144 tG~~~ 148 (412)
+|.++
T Consensus 159 dG~~S 163 (385)
T TIGR01988 159 DGANS 163 (385)
T ss_pred CCCCC
Confidence 99755
No 141
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.02 E-value=5.2e-09 Score=99.84 Aligned_cols=129 Identities=16% Similarity=0.212 Sum_probs=79.9
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc----ccCCC--------------CCCCeeeecCCccc-cCCCC
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS----LWKHR--------------TYDRLKLHLPKQFC-ELPLF 78 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~----~~~~~--------------~~~~~~~~~~~~~~-~~~~~ 78 (412)
+||+||||||+|+++|..|++.|++|+|+|+....+. ..... ....+.+..|.... .+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~- 79 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGR- 79 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEecc-
Confidence 4899999999999999999999999999998754321 11000 11111122221100 0000
Q ss_pred CCCC-CCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcC-CCCcEEEEEc--------c--eEEEeCEEEEeeCC
Q 037065 79 GFPE-NFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDH-ASGFWRVQTQ--------D--SEYISKWLVVATGE 146 (412)
Q Consensus 79 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~~v~~~--------~--~~~~~d~vIlAtG~ 146 (412)
..+. .+.....+..+.+++.+.+.+.+++++.+ +++++.... ..+.+.++.. + .++++|+||.|+|.
T Consensus 80 ~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~ 158 (398)
T TIGR02028 80 TLKEHEYIGMLRREVLDSFLRRRAADAGATLING-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGA 158 (398)
T ss_pred CCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcc-eEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCc
Confidence 0011 11113678999999999999999999766 476665322 1234555431 1 47999999999995
Q ss_pred CC
Q 037065 147 NA 148 (412)
Q Consensus 147 ~~ 148 (412)
.+
T Consensus 159 ~S 160 (398)
T TIGR02028 159 NS 160 (398)
T ss_pred ch
Confidence 44
No 142
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.01 E-value=4e-09 Score=100.23 Aligned_cols=64 Identities=23% Similarity=0.172 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCC
Q 037065 88 PTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p 153 (412)
.....+...+.+.+.+.+++++.+++|+++...+ +.+.+++++.++.+|+||+|+|.++....+
T Consensus 146 v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g~~~a~~vV~A~G~~~~~l~~ 209 (376)
T PRK11259 146 LRPELAIKAHLRLAREAGAELLFNEPVTAIEADG--DGVTVTTADGTYEAKKLVVSAGAWVKDLLP 209 (376)
T ss_pred EcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeC--CeEEEEeCCCEEEeeEEEEecCcchhhhcc
Confidence 4456666767677778899999999999998866 567788877889999999999986655444
No 143
>PRK07588 hypothetical protein; Provisional
Probab=99.01 E-value=3.6e-09 Score=101.06 Aligned_cols=128 Identities=17% Similarity=0.185 Sum_probs=81.2
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC--c----ccCCC------------------CCCCeeeecCCc--c
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA--S----LWKHR------------------TYDRLKLHLPKQ--F 72 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g--~----~~~~~------------------~~~~~~~~~~~~--~ 72 (412)
||+|||||++|+++|+.|++.|++|+|+|+.+... + .|... ....+....... .
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 79999999999999999999999999999986432 1 11110 011111111100 0
Q ss_pred ccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCC
Q 037065 73 CELPLFGFPENFP---KYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENA 148 (412)
Q Consensus 73 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~ 148 (412)
..++...+..... ...++..+.+.+.+... .+++++++++|++++..+ +.+++++++ .++.+|.||.|+|.+|
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHR--DGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECC--CeEEEEECCCCEEEeCEEEECCCCCc
Confidence 0111000111111 12456777776665443 368899999999998766 567777766 6789999999999755
Q ss_pred C
Q 037065 149 E 149 (412)
Q Consensus 149 ~ 149 (412)
.
T Consensus 159 ~ 159 (391)
T PRK07588 159 H 159 (391)
T ss_pred c
Confidence 4
No 144
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.01 E-value=2.9e-09 Score=101.45 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=82.2
Q ss_pred CeEEECCChHHHHHHHHHHHcC-CCeEEEecCCCCCc----------ccCC--------CCCCCe----------eeecC
Q 037065 19 GPIIVGAGPSGLAVSACLSQQG-LPSLILERSDCLAS----------LWKH--------RTYDRL----------KLHLP 69 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g-~~v~vie~~~~~g~----------~~~~--------~~~~~~----------~~~~~ 69 (412)
||+||||||+|+++|+.|++.| ++|+|+|+.+.... .+.. ..++.+ .....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 99999999753211 0000 000000 00000
Q ss_pred Cc--cccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHH-cCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEee
Q 037065 70 KQ--FCELPLFGFPENFPK-YPTKRQFIAYIESYASH-FKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVAT 144 (412)
Q Consensus 70 ~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAt 144 (412)
.. ...+....+...... ...+..+.+.+.+.+.. .+++++++++|+++...+ +.+++++.+ .++.+|+||.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEEEEECCCCEEEeeEEEEec
Confidence 00 000000000000001 14567788888887777 489999999999998766 567777765 679999999999
Q ss_pred CCCC
Q 037065 145 GENA 148 (412)
Q Consensus 145 G~~~ 148 (412)
|.++
T Consensus 159 G~~S 162 (382)
T TIGR01984 159 GANS 162 (382)
T ss_pred CCCh
Confidence 9755
No 145
>PRK09126 hypothetical protein; Provisional
Probab=99.00 E-value=6.4e-09 Score=99.41 Aligned_cols=130 Identities=18% Similarity=0.177 Sum_probs=79.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCC--------Cc---ccCC--------CCCCCeeee--cCCcc---
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCL--------AS---LWKH--------RTYDRLKLH--LPKQF--- 72 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~--------g~---~~~~--------~~~~~~~~~--~~~~~--- 72 (412)
.+||+||||||+|+++|..|++.|++|+|+|+.+.. |. .+.. ..++.+... .+...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 589999999999999999999999999999998642 10 0000 001111000 00000
Q ss_pred ccC---CCCCCCC------CCCCCCCHHHHHHHHHHHH-HHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEE
Q 037065 73 CEL---PLFGFPE------NFPKYPTKRQFIAYIESYA-SHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLV 141 (412)
Q Consensus 73 ~~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vI 141 (412)
..- ....++. ......++..+.+.+.+.+ +..+++++++++|++++..+ +.+.+++++ .++.+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~~v~~~~g~~~~a~~vI 160 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGAQVTLANGRRLTARLLV 160 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeEEEEEcCCCEEEeCEEE
Confidence 000 0001110 0001134455655554444 34589999999999998765 556676655 689999999
Q ss_pred EeeCCCC
Q 037065 142 VATGENA 148 (412)
Q Consensus 142 lAtG~~~ 148 (412)
.|+|..+
T Consensus 161 ~AdG~~S 167 (392)
T PRK09126 161 AADSRFS 167 (392)
T ss_pred EeCCCCc
Confidence 9999544
No 146
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.00 E-value=4.7e-09 Score=99.94 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCC
Q 037065 88 PTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPV 151 (412)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~ 151 (412)
.....+...+.+.++..+++++.+++|+++..++ +.+.+.+.++++.+|+||+|+|.+....
T Consensus 142 i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~~v~~~~~~i~a~~vV~aaG~~~~~l 203 (380)
T TIGR01377 142 LYAEKALRALQELAEAHGATVRDGTKVVEIEPTE--LLVTVKTTKGSYQANKLVVTAGAWTSKL 203 (380)
T ss_pred EcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeEEEEeCCCEEEeCEEEEecCcchHHH
Confidence 3556777888888888899999999999998765 5677877778899999999999765433
No 147
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.98 E-value=5.4e-09 Score=99.86 Aligned_cols=58 Identities=14% Similarity=0.037 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCC
Q 037065 89 TKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENA 148 (412)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~ 148 (412)
....+.+.+.+.+++.+++++++++|..+...+ +.+.|.+.++++.+|+||+|+|.++
T Consensus 147 d~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~~V~~~~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 147 DYRAVAEAMAELIQARGGEIRLGAEVTALDEHA--NGVVVRTTQGEYEARTLINCAGLMS 204 (393)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeEEEEECCCEEEeCEEEECCCcch
Confidence 456777888888888899999999999998765 5677887778899999999999765
No 148
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.98 E-value=6.6e-09 Score=98.94 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=78.7
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCC--C---C--c-----ccCC--------CCCCCeee----------
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDC--L---A--S-----LWKH--------RTYDRLKL---------- 66 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~--~---g--~-----~~~~--------~~~~~~~~---------- 66 (412)
++||+|||||++|+++|+.|++.|++|+|||+.+. . + + .+.. ..++.+..
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 47999999999999999999999999999998641 1 0 0 0100 01111110
Q ss_pred --ecCCccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHH-cCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEE
Q 037065 67 --HLPKQFCELPLFGFPE-NFPKYPTKRQFIAYIESYASH-FKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLV 141 (412)
Q Consensus 67 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vI 141 (412)
........+....+.. ..........+...+.+.+.. .+++++++++|++++.++ +.+++++.+ .++++|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~--~~~~v~~~~g~~~~~~lvI 160 (384)
T PRK08849 83 TWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSA--EGNRVTLESGAEIEAKWVI 160 (384)
T ss_pred EEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcC--CeEEEEECCCCEEEeeEEE
Confidence 0000000000000000 000112234455555444444 468899999999998876 556677766 689999999
Q ss_pred EeeCCCCC
Q 037065 142 VATGENAE 149 (412)
Q Consensus 142 lAtG~~~~ 149 (412)
.|+|.+|.
T Consensus 161 gADG~~S~ 168 (384)
T PRK08849 161 GADGANSQ 168 (384)
T ss_pred EecCCCch
Confidence 99996553
No 149
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.98 E-value=1.3e-08 Score=101.38 Aligned_cols=131 Identities=24% Similarity=0.378 Sum_probs=82.5
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc------cCC--------CCCCCe----------eee-cCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL------WKH--------RTYDRL----------KLH-LPK 70 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~------~~~--------~~~~~~----------~~~-~~~ 70 (412)
.++||+||||||+|+++|+.|++.|++|+|||+.+..... +.. ...+.+ ... ...
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 101 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDE 101 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCC
Confidence 4689999999999999999999999999999998754221 100 000000 000 000
Q ss_pred ccccCCCCCCC-CCCCC--CCCHHHHHHHHHHHHHHc-CCcccccceEEEEEEcCCCCcEEEEEc--c--eEEEeCEEEE
Q 037065 71 QFCELPLFGFP-ENFPK--YPTKRQFIAYIESYASHF-KIQPKFKQAVQTALFDHASGFWRVQTQ--D--SEYISKWLVV 142 (412)
Q Consensus 71 ~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~--~--~~~~~d~vIl 142 (412)
....+...+.. ..++. ...+..+.+++.+.+.+. +++++++++|+++..++ +.++++.. + .++.+|+||.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~v~~~~~~g~~~i~ad~vVg 179 (547)
T PRK08132 102 EVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVTLTVETPDGPYTLEADWVIA 179 (547)
T ss_pred eEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEEEEEECCCCcEEEEeCEEEE
Confidence 01111100000 00111 145667778887777765 68899999999998876 45555442 2 3799999999
Q ss_pred eeCCCC
Q 037065 143 ATGENA 148 (412)
Q Consensus 143 AtG~~~ 148 (412)
|+|.++
T Consensus 180 ADG~~S 185 (547)
T PRK08132 180 CDGARS 185 (547)
T ss_pred CCCCCc
Confidence 999755
No 150
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.98 E-value=5.1e-09 Score=101.31 Aligned_cols=132 Identities=18% Similarity=0.269 Sum_probs=81.2
Q ss_pred cCeEEECCChHHHHHHHHHHH----cCCCeEEEecCC--CCC--------cccCC----------------CCCCCe---
Q 037065 18 HGPIIVGAGPSGLAVSACLSQ----QGLPSLILERSD--CLA--------SLWKH----------------RTYDRL--- 64 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~----~g~~v~vie~~~--~~g--------~~~~~----------------~~~~~~--- 64 (412)
+||+|||||++|+++|+.|++ .|++|+|||+++ ... +.+.. ..++.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 689999999999999999998 799999999943 211 00000 011111
Q ss_pred --------eeecCCc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcC---CcccccceEEEEEEc-----CCCCcE
Q 037065 65 --------KLHLPKQ--FCELPLFGFPENFPKYPTKRQFIAYIESYASHFK---IQPKFKQAVQTALFD-----HASGFW 126 (412)
Q Consensus 65 --------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~i~~~-----~~~~~~ 126 (412)
....... ...+.............++..+.+.+.+.+.+.+ ++++++++|++++.. ++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 0000000 0011110000000112456778888877777664 889999999999753 222456
Q ss_pred EEEEcc-eEEEeCEEEEeeCCCCC
Q 037065 127 RVQTQD-SEYISKWLVVATGENAE 149 (412)
Q Consensus 127 ~v~~~~-~~~~~d~vIlAtG~~~~ 149 (412)
+++..+ +++++|+||.|.|.+|.
T Consensus 161 ~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 161 HITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred EEEEcCCCEEEeeEEEEecCCCCh
Confidence 677666 78999999999997653
No 151
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.98 E-value=6.5e-09 Score=99.26 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=78.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCC---C---c--ccCC------------------CCCCCeeeecCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCL---A---S--LWKH------------------RTYDRLKLHLPK 70 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~---g---~--~~~~------------------~~~~~~~~~~~~ 70 (412)
.+||+||||||+|+++|+.|++.|++|+|+|+.+.. + . .+.. .....+......
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 468999999999999999999999999999998631 1 0 0000 001111111111
Q ss_pred ccccCCCCCCCCCC--C--CCCCHHHHHHHHHHHHHHcCCcccccceEEEEEE-cCCCCcEEEEE--cc--eEEEeCEEE
Q 037065 71 QFCELPLFGFPENF--P--KYPTKRQFIAYIESYASHFKIQPKFKQAVQTALF-DHASGFWRVQT--QD--SEYISKWLV 141 (412)
Q Consensus 71 ~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~~~v~~--~~--~~~~~d~vI 141 (412)
.... .+++... . ....+..+.+.+.+.+...+++++++++|+++.. ++ +...|+. ++ .++++|+||
T Consensus 82 ~~~~---~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~--~~~~V~~~~~G~~~~i~ad~vV 156 (392)
T PRK08243 82 RRHR---IDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDS--DRPYVTYEKDGEEHRLDCDFIA 156 (392)
T ss_pred EEEE---eccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCC--CceEEEEEcCCeEEEEEeCEEE
Confidence 1111 1111110 0 0123455666666666677899999999998876 33 2333444 22 478999999
Q ss_pred EeeCCCCC
Q 037065 142 VATGENAE 149 (412)
Q Consensus 142 lAtG~~~~ 149 (412)
.|.|.+|.
T Consensus 157 gADG~~S~ 164 (392)
T PRK08243 157 GCDGFHGV 164 (392)
T ss_pred ECCCCCCc
Confidence 99997663
No 152
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.98 E-value=7.1e-09 Score=99.45 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=79.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecC-CC--CCc--------ccCC--------CCCCCee-----------e
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERS-DC--LAS--------LWKH--------RTYDRLK-----------L 66 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~-~~--~g~--------~~~~--------~~~~~~~-----------~ 66 (412)
.+||+|||||++|+++|+.|++.|++|+|+|+. +. ++. .+.. ..++.+. .
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 579999999999999999999999999999985 21 110 0000 0111111 1
Q ss_pred ecCCc--cccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEE
Q 037065 67 HLPKQ--FCELPLFGFPE-NFPKYPTKRQFIAYIESYASHF-KIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLV 141 (412)
Q Consensus 67 ~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vI 141 (412)
..... ...+....... .+........+.+.+.+.+.+. +++++++++|+++..++ +.+.++..+ +++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEAWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeEEEEECCCCEEEeCEEE
Confidence 00000 00000000000 0011133555666666655554 68899999999998766 456677665 689999999
Q ss_pred EeeCCCC
Q 037065 142 VATGENA 148 (412)
Q Consensus 142 lAtG~~~ 148 (412)
.|+|.++
T Consensus 162 gADG~~S 168 (405)
T PRK08850 162 GADGANS 168 (405)
T ss_pred EeCCCCC
Confidence 9999654
No 153
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.97 E-value=7.4e-09 Score=99.11 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=79.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHc---CCCeEEEecCCCCC-----------cccCC--------CCCCCeee--------
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQ---GLPSLILERSDCLA-----------SLWKH--------RTYDRLKL-------- 66 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~---g~~v~vie~~~~~g-----------~~~~~--------~~~~~~~~-------- 66 (412)
++||+|||||++|+++|+.|++. |++|+|+|+..... +.+.. ..++.+..
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 68999999999999999999998 99999999952110 01000 01111100
Q ss_pred --ecCCcc--ccCCCCCCCCCC-CCCCCHHHHHHHHHHHHHH-cCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCE
Q 037065 67 --HLPKQF--CELPLFGFPENF-PKYPTKRQFIAYIESYASH-FKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKW 139 (412)
Q Consensus 67 --~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~ 139 (412)
...... ..+....+.... .....+..+.+.+.+.+.. .+++++++++|+++...+ +.+.+++.+ .++.+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~~v~~~~g~~~~a~~ 160 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQ--GSVRVTLDDGETLTGRL 160 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeEEEEECCCCEEEeCE
Confidence 000000 000000000000 0113455666676665555 478888899999998765 567777766 5799999
Q ss_pred EEEeeCCCC
Q 037065 140 LVVATGENA 148 (412)
Q Consensus 140 vIlAtG~~~ 148 (412)
||.|+|.++
T Consensus 161 vI~AdG~~S 169 (395)
T PRK05732 161 LVAADGSHS 169 (395)
T ss_pred EEEecCCCh
Confidence 999999654
No 154
>PRK07236 hypothetical protein; Provisional
Probab=98.94 E-value=2.1e-08 Score=95.64 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=76.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCC----C-cc--cCC--------CCCCCeeeecCC---ccccCCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCL----A-SL--WKH--------RTYDRLKLHLPK---QFCELPLF 78 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~----g-~~--~~~--------~~~~~~~~~~~~---~~~~~~~~ 78 (412)
..+|+|||||++|+++|+.|++.|++|+|+|+.+.. | +. +.. ...+......+. .+....+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 579999999999999999999999999999998632 1 10 100 000000000000 00000000
Q ss_pred CCCC-CC-CCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCC
Q 037065 79 GFPE-NF-PKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAE 149 (412)
Q Consensus 79 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~ 149 (412)
.+.. .. ........+.+.+.+.. ....++++++|+++..++ +.++++..+ .++.+|.||.|.|.+|.
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDG--DRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecC--CeEEEEECCCCEEEeCEEEECCCCCch
Confidence 0000 00 01123444444443321 235688899999998766 567777776 78999999999997664
No 155
>PRK06996 hypothetical protein; Provisional
Probab=98.91 E-value=1.3e-08 Score=97.33 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=85.2
Q ss_pred ccccccCeEEECCChHHHHHHHHHHHcC----CCeEEEecCCCCC---------------------cccCCCCCC--Cee
Q 037065 13 KSVLVHGPIIVGAGPSGLAVSACLSQQG----LPSLILERSDCLA---------------------SLWKHRTYD--RLK 65 (412)
Q Consensus 13 ~~~~~~~vvIIG~G~aGl~~A~~l~~~g----~~v~vie~~~~~g---------------------~~~~~~~~~--~~~ 65 (412)
|....+||+||||||+|+++|+.|++.| ++|+|+|+.+... |.|.....+ .+.
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~ 86 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIH 86 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEE
Confidence 5566789999999999999999999987 4699999974211 012111111 111
Q ss_pred eecCCc----cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc----eEEEe
Q 037065 66 LHLPKQ----FCELPLFGFPENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD----SEYIS 137 (412)
Q Consensus 66 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~----~~~~~ 137 (412)
...... .+.......+. ....+.+..+.+.|.+.+...++++.+++++++++... +.++++..+ +++++
T Consensus 87 ~~~~~~~g~~~~~~~~~~~~~-~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~--~~v~v~~~~~~g~~~i~a 163 (398)
T PRK06996 87 VSQRGHFGRTLIDRDDHDVPA-LGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA--DGVTLALGTPQGARTLRA 163 (398)
T ss_pred EecCCCCceEEecccccCCCc-CEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC--CeEEEEECCCCcceEEee
Confidence 110000 00011111110 01125678888999888888899999999999987766 567777653 48999
Q ss_pred CEEEEeeCC
Q 037065 138 KWLVVATGE 146 (412)
Q Consensus 138 d~vIlAtG~ 146 (412)
|+||.|+|.
T Consensus 164 ~lvIgADG~ 172 (398)
T PRK06996 164 RIAVQAEGG 172 (398)
T ss_pred eEEEECCCC
Confidence 999999995
No 156
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.91 E-value=2.8e-08 Score=92.59 Aligned_cols=129 Identities=17% Similarity=0.229 Sum_probs=78.8
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC--cccCCCCCCC-------eeeecCCcc------c----------
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA--SLWKHRTYDR-------LKLHLPKQF------C---------- 73 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g--~~~~~~~~~~-------~~~~~~~~~------~---------- 73 (412)
||+|||+|.+||++|+.|.+. ++|+|+-|.+.-. ..|.+.-... ..++..+.+ +
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999988 9999999976432 2444421000 000000000 0
Q ss_pred ---------cCCCCCCCCCC-------------------CCCCCHHHHHHHHHHHHHH-cCCcccccceEEEEEEcCCCC
Q 037065 74 ---------ELPLFGFPENF-------------------PKYPTKRQFIAYIESYASH-FKIQPKFKQAVQTALFDHASG 124 (412)
Q Consensus 74 ---------~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~ 124 (412)
.-.+.+|.... ..-.++..+...|...+++ .+++++.+..+..+..+++..
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 00112222111 0115788899999887776 689988887777776655311
Q ss_pred cEEEEE--c---ceEEEeCEEEEeeCCCC
Q 037065 125 FWRVQT--Q---DSEYISKWLVVATGENA 148 (412)
Q Consensus 125 ~~~v~~--~---~~~~~~d~vIlAtG~~~ 148 (412)
.--+.+ . -.++.++.||+|||..+
T Consensus 168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~g 196 (518)
T COG0029 168 VAGVLVLNRNGELGTFRAKAVVLATGGLG 196 (518)
T ss_pred EeEEEEecCCCeEEEEecCeEEEecCCCc
Confidence 101222 1 16788999999999533
No 157
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.90 E-value=1.5e-08 Score=98.78 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCC
Q 037065 88 PTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p 153 (412)
.+...+...+.+.+++.+++++.++.|+.++. + +.+.|.+.++++.+|+||+|+|.++....+
T Consensus 180 i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~~~~v~t~~g~v~A~~VV~Atga~s~~l~~ 242 (460)
T TIGR03329 180 VQPGLLVRGLRRVALELGVEIHENTPMTGLEE-G--QPAVVRTPDGQVTADKVVLALNAWMASHFP 242 (460)
T ss_pred ECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-C--CceEEEeCCcEEECCEEEEcccccccccCh
Confidence 34566677777888888999999999999975 3 456788887889999999999987654443
No 158
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.90 E-value=2e-08 Score=95.68 Aligned_cols=128 Identities=15% Similarity=0.105 Sum_probs=75.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCC------Cc--ccCC--------C----------CCCCeeeecCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCL------AS--LWKH--------R----------TYDRLKLHLPK 70 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~------g~--~~~~--------~----------~~~~~~~~~~~ 70 (412)
.+||+|||||++|+++|+.|++.|++|+|+|+.+.. +. .+.. . ....+......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 469999999999999999999999999999998741 11 1100 0 00111110000
Q ss_pred ccccCCCCCCCCCCCC----CCCHHHHHHHHHHHHHHcCCcccccceEEEEEE-cCCCCcEEEEEc-c---eEEEeCEEE
Q 037065 71 QFCELPLFGFPENFPK----YPTKRQFIAYIESYASHFKIQPKFKQAVQTALF-DHASGFWRVQTQ-D---SEYISKWLV 141 (412)
Q Consensus 71 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~~~v~~~-~---~~~~~d~vI 141 (412)
.... .++...... ......+...+.+.+...++.++++.+++.+.. +++ ...|+.. + .++.+|.||
T Consensus 82 ~~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~--~~~V~~~~~g~~~~i~adlvI 156 (390)
T TIGR02360 82 QRFR---IDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGD--RPYVTFERDGERHRLDCDFIA 156 (390)
T ss_pred EEEE---EeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCC--ccEEEEEECCeEEEEEeCEEE
Confidence 0000 111111000 012345556666666667888888887776654 332 2234443 3 378999999
Q ss_pred EeeCCCCC
Q 037065 142 VATGENAE 149 (412)
Q Consensus 142 lAtG~~~~ 149 (412)
.|.|.+|.
T Consensus 157 GADG~~S~ 164 (390)
T TIGR02360 157 GCDGFHGV 164 (390)
T ss_pred ECCCCchh
Confidence 99997663
No 159
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.89 E-value=1.8e-08 Score=96.52 Aligned_cols=130 Identities=17% Similarity=0.183 Sum_probs=81.0
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc------ccCC--------CCCCCe----------eeecCCcc-
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS------LWKH--------RTYDRL----------KLHLPKQF- 72 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~------~~~~--------~~~~~~----------~~~~~~~~- 72 (412)
.+|+|||||++|+++|+.|++.|++|+|+|+.+.... .+.. ..++.+ ........
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 6899999999999999999999999999999864321 1110 000000 00000000
Q ss_pred --ccCCCCCCC-C-CCCC--CCCHHHHHHHHHHHHHH-cCCcccccceEEEEEEcCCCCcEEEEEc---c-eEEEeCEEE
Q 037065 73 --CELPLFGFP-E-NFPK--YPTKRQFIAYIESYASH-FKIQPKFKQAVQTALFDHASGFWRVQTQ---D-SEYISKWLV 141 (412)
Q Consensus 73 --~~~~~~~~~-~-~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~---~-~~~~~d~vI 141 (412)
......... . .... ...+..+.+.|.+.+.+ .+++++++++|+++..++ +.++++.. + .++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~--~~v~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTG--NSITATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC--CceEEEEEeCCCCcEEecCEEE
Confidence 000000000 0 0011 14677888888776655 478899999999998765 45555542 2 578999999
Q ss_pred EeeCCCCC
Q 037065 142 VATGENAE 149 (412)
Q Consensus 142 lAtG~~~~ 149 (412)
.|.|.+|.
T Consensus 161 gADG~~S~ 168 (400)
T PRK06475 161 ACDGVWSM 168 (400)
T ss_pred ECCCccHh
Confidence 99997663
No 160
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.87 E-value=1.3e-08 Score=98.68 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHH----cC--CcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCC
Q 037065 88 PTKRQFIAYIESYASH----FK--IQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEP 150 (412)
Q Consensus 88 ~~~~~~~~~~~~~~~~----~~--~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p 150 (412)
.....+...+.+.+++ .+ ++++++++|+++...++ +.|.|++.++++.+|+||+|+|.|+.+
T Consensus 208 Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~-~~~~V~T~~G~i~A~~VVvaAG~~S~~ 275 (497)
T PTZ00383 208 VDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSND-SLYKIHTNRGEIRARFVVVSACGYSLL 275 (497)
T ss_pred ECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC-CeEEEEECCCEEEeCEEEECcChhHHH
Confidence 3456677777777777 66 67889999999998642 568888888899999999999986643
No 161
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.87 E-value=2.7e-08 Score=95.82 Aligned_cols=127 Identities=15% Similarity=0.156 Sum_probs=77.8
Q ss_pred CeEEECCChHHHHHHHHHHHcC-CCeEEEecCCCCCcc------cCC--------CCCCCeee--e-cCC----ccccC-
Q 037065 19 GPIIVGAGPSGLAVSACLSQQG-LPSLILERSDCLASL------WKH--------RTYDRLKL--H-LPK----QFCEL- 75 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g-~~v~vie~~~~~g~~------~~~--------~~~~~~~~--~-~~~----~~~~~- 75 (412)
+|+|||||++||++|+.|++.| ++|+|+|+.+..+.. +.. ...+.+.. . .+. ..+..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 599999998764321 111 00000000 0 000 00000
Q ss_pred C-------CCCCCCCCC-CCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCC
Q 037065 76 P-------LFGFPENFP-KYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGE 146 (412)
Q Consensus 76 ~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~ 146 (412)
. ...+..... ....+..+.+.+.+.+. ...++++++|++++..+ +.|++...+ .++.+|.||+|+|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~--~~~~v~~~~g~~~~ad~vVgADG~ 157 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQA--EEVQVLFTDGTEYRCDLLIGADGI 157 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecC--CcEEEEEcCCCEEEeeEEEECCCc
Confidence 0 000000001 12456677776665442 23467899999998766 568887766 67999999999997
Q ss_pred CCC
Q 037065 147 NAE 149 (412)
Q Consensus 147 ~~~ 149 (412)
++.
T Consensus 158 ~S~ 160 (414)
T TIGR03219 158 KSA 160 (414)
T ss_pred cHH
Confidence 663
No 162
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.86 E-value=1.4e-09 Score=104.69 Aligned_cols=127 Identities=17% Similarity=0.245 Sum_probs=34.9
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeec-----C----Cccc-cCCC---CCCC--CC
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHL-----P----KQFC-ELPL---FGFP--EN 83 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~-----~----~~~~-~~~~---~~~~--~~ 83 (412)
||||||||++|++||+.+++.|.+|+|||+.+.+||.........+.... . ..+. .... .+.+ ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 79999999999999999999999999999999999865442211110000 0 0000 0000 0000 00
Q ss_pred C--CCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEc----ceEEEeCEEEEeeCC
Q 037065 84 F--PKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQ----DSEYISKWLVVATGE 146 (412)
Q Consensus 84 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~----~~~~~~d~vIlAtG~ 146 (412)
+ ........+...+.+.+.+.++++++++.|.++..++. ....|.+. ..++.++.+|.|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~-~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGG-RITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 0 01234455566777777888999999999999988763 22334443 278999999999993
No 163
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.86 E-value=6e-08 Score=97.59 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=80.3
Q ss_pred cccCeEEECCChHHHHHHHHHHHc-CCCeEEEecCCCCCc------ccCC-----------------C-CCCCeeeecCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQ-GLPSLILERSDCLAS------LWKH-----------------R-TYDRLKLHLPK 70 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~-g~~v~vie~~~~~g~------~~~~-----------------~-~~~~~~~~~~~ 70 (412)
..+||+||||||+||++|+.|++. |++|+|||+.+.... .+.. . ....+....+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 378999999999999999999995 999999999853211 0100 0 00011111000
Q ss_pred -----ccccCCC-CCCCCC---CC-CCCCHHHHHHHHHHHHHHcC--CcccccceEEEEEEcCCC-CcEEEEEc------
Q 037065 71 -----QFCELPL-FGFPEN---FP-KYPTKRQFIAYIESYASHFK--IQPKFKQAVQTALFDHAS-GFWRVQTQ------ 131 (412)
Q Consensus 71 -----~~~~~~~-~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~i~~~~~~-~~~~v~~~------ 131 (412)
....... ...... ++ ...++..+.+.+.+.+.+.+ +.+.++++++++..++.. ..+++++.
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~ 190 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH 190 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence 0000000 000000 01 12456677788877777765 466889999999876422 23555543
Q ss_pred -c--eEEEeCEEEEeeCCCC
Q 037065 132 -D--SEYISKWLVVATGENA 148 (412)
Q Consensus 132 -~--~~~~~d~vIlAtG~~~ 148 (412)
+ +++++|+||.|.|.+|
T Consensus 191 ~g~~~tv~A~~lVGaDGa~S 210 (634)
T PRK08294 191 EGEEETVRAKYVVGCDGARS 210 (634)
T ss_pred CCceEEEEeCEEEECCCCch
Confidence 2 5899999999999765
No 164
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.85 E-value=3.6e-08 Score=96.98 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-----eEEEeCEEEEeeCCCCCCC
Q 037065 89 TKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-----SEYISKWLVVATGENAEPV 151 (412)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-----~~~~~d~vIlAtG~~~~p~ 151 (412)
....+...+...+.+.|++++.+++|+++...+ +.|.+.+.+ .++.+++||.|+|.|+...
T Consensus 153 d~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l 218 (502)
T PRK13369 153 DDARLVVLNALDAAERGATILTRTRCVSARREG--GLWRVETRDADGETRTVRARALVNAAGPWVTDV 218 (502)
T ss_pred cHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CEEEEEEEeCCCCEEEEEecEEEECCCccHHHH
Confidence 345555566667888899999999999998765 567776654 3699999999999866443
No 165
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.85 E-value=2.6e-08 Score=94.20 Aligned_cols=61 Identities=20% Similarity=0.351 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHH-cCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCC
Q 037065 88 PTKRQFIAYIESYASH-FKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPD 154 (412)
Q Consensus 88 ~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~ 154 (412)
.....+...+.+.+.+ .+++++.+++|++++.. .|.+.++++.+|+||+|+|.++....+.
T Consensus 142 v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~------~v~t~~g~i~a~~VV~A~G~~s~~l~~~ 203 (365)
T TIGR03364 142 VEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG------TVRTSRGDVHADQVFVCPGADFETLFPE 203 (365)
T ss_pred ECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC------eEEeCCCcEEeCEEEECCCCChhhhCcc
Confidence 3455666777666655 49999989999998642 3777777789999999999876555443
No 166
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.84 E-value=1.5e-08 Score=99.16 Aligned_cols=126 Identities=16% Similarity=0.183 Sum_probs=76.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC-CCCcccCCCCCCCeeeec----------CC---------ccccCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD-CLASLWKHRTYDRLKLHL----------PK---------QFCELP 76 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~-~~g~~~~~~~~~~~~~~~----------~~---------~~~~~~ 76 (412)
.+||+|||||+||+.||..+++.|.+|+++|++. .+|..-. .+.+.... .. ...++.
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~C---npsiGG~akg~lvrEidalGg~~g~~~d~~giq~r 80 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSC---NPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFR 80 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCC---ccccccchhhHHHHHHHhcCCHHHHHHhhccCcee
Confidence 6899999999999999999999999999999984 4442111 11110000 00 000010
Q ss_pred CCCC---CCCC--CCCCCHHHHHHHHHHHHHHc-CCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCC
Q 037065 77 LFGF---PENF--PKYPTKRQFIAYIESYASHF-KIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGEN 147 (412)
Q Consensus 77 ~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~ 147 (412)
.... +..+ ..-..+..+...+.+.+.+. ++++. ...|+.+..++. ....|.+.+ ..+.++.||+|||.+
T Consensus 81 ~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~g-rV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 81 MLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENG-RVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred ecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCC-EEEEEEECCCCEEECCEEEEeeCcc
Confidence 0000 1000 01234566677777767655 67764 667888876552 222255555 689999999999953
No 167
>PRK07538 hypothetical protein; Provisional
Probab=98.84 E-value=7.6e-08 Score=92.60 Aligned_cols=128 Identities=17% Similarity=0.205 Sum_probs=78.1
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc----c--cCC--------CCC----------CCeeeecCCc--c
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS----L--WKH--------RTY----------DRLKLHLPKQ--F 72 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~----~--~~~--------~~~----------~~~~~~~~~~--~ 72 (412)
||+|||||++|+++|+.|++.|++|+|+|+.+.... . +.. ..+ ..+....+.. .
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 799999999999999999999999999999864321 0 000 000 1111110000 0
Q ss_pred ccCCCCCCCCC--CCC-CCCHHHHHHHHHHHHHH-cCC-cccccceEEEEEEcCCCCcEEEEEcc------eEEEeCEEE
Q 037065 73 CELPLFGFPEN--FPK-YPTKRQFIAYIESYASH-FKI-QPKFKQAVQTALFDHASGFWRVQTQD------SEYISKWLV 141 (412)
Q Consensus 73 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~-~~~-~~~~~~~v~~i~~~~~~~~~~v~~~~------~~~~~d~vI 141 (412)
...+. ..... ++. .+.+..+.+.+.+.+.+ .+. .++++++|+++..+++ ...+...+ .++++|.||
T Consensus 82 ~~~~~-~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~--~~~~~~~~~~~g~~~~~~adlvI 158 (413)
T PRK07538 82 WSEPR-GLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD--VTVVFLGDRAGGDLVSVRGDVLI 158 (413)
T ss_pred eeccC-CcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC--ceEEEEeccCCCccceEEeeEEE
Confidence 00000 00000 011 24677888877666544 454 5889999999987663 33344322 489999999
Q ss_pred EeeCCCCC
Q 037065 142 VATGENAE 149 (412)
Q Consensus 142 lAtG~~~~ 149 (412)
.|+|.+|.
T Consensus 159 gADG~~S~ 166 (413)
T PRK07538 159 GADGIHSA 166 (413)
T ss_pred ECCCCCHH
Confidence 99997663
No 168
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.83 E-value=3.8e-08 Score=94.66 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc------eEEEeCEEEEeeCCCCC
Q 037065 89 TKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD------SEYISKWLVVATGENAE 149 (412)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~------~~~~~d~vIlAtG~~~~ 149 (412)
....+...+.+.+++.+++++.+++|+++...+ +.+.+.+.+ .++.+|+||+|+|.++.
T Consensus 195 ~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 195 DIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 345666777788888899999999999998755 556655433 26899999999998653
No 169
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.83 E-value=1e-07 Score=93.77 Aligned_cols=131 Identities=18% Similarity=0.163 Sum_probs=81.1
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc--cCCCCC----CCee-----eecCCccc-----------
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL--WKHRTY----DRLK-----LHLPKQFC----------- 73 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~--~~~~~~----~~~~-----~~~~~~~~----------- 73 (412)
..+||||||+|.+|+++|+.+++.|.+|+||||.+..||. +..... .... .+.+..++
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 139 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN 139 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 4789999999999999999999999999999999877652 111000 0000 00000000
Q ss_pred -------------------cCCCCCCC-----CC------C-C--CCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEc
Q 037065 74 -------------------ELPLFGFP-----EN------F-P--KYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFD 120 (412)
Q Consensus 74 -------------------~~~~~~~~-----~~------~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 120 (412)
.-.+.++. .. . + .......+.+.+.+.+++.++++++++.|+.+..+
T Consensus 140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~ 219 (506)
T PRK06481 140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK 219 (506)
T ss_pred CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec
Confidence 00001110 00 0 0 11123457777888888889999999999999764
Q ss_pred CCCCc---EEEEEcc---eEEEeCEEEEeeCCCC
Q 037065 121 HASGF---WRVQTQD---SEYISKWLVVATGENA 148 (412)
Q Consensus 121 ~~~~~---~~v~~~~---~~~~~d~vIlAtG~~~ 148 (412)
+ +. +.+...+ .++.+|.||+|||.+.
T Consensus 220 ~--g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 220 D--GKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred C--CEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 4 32 2333333 4689999999999644
No 170
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.83 E-value=8.7e-08 Score=92.95 Aligned_cols=130 Identities=17% Similarity=0.183 Sum_probs=80.9
Q ss_pred CeEEECCChHHHHHHHHHHHcC-CCeEEEecCCCCCcc--------cCCCCC--------CCee-------------ee-
Q 037065 19 GPIIVGAGPSGLAVSACLSQQG-LPSLILERSDCLASL--------WKHRTY--------DRLK-------------LH- 67 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g-~~v~vie~~~~~g~~--------~~~~~~--------~~~~-------------~~- 67 (412)
||+|||+|.+|+++|+.|++.| .+|+|+||.+..|+. |..... .... .+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 999999998776542 111000 0000 00
Q ss_pred ---------cCC--ccccCCCCCC-------------CCC-C--CCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEc
Q 037065 68 ---------LPK--QFCELPLFGF-------------PEN-F--PKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFD 120 (412)
Q Consensus 68 ---------~~~--~~~~~~~~~~-------------~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 120 (412)
.+. .+.. ....+ +.. . ........+.+.+.+.+++.+++++++++|+++..+
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~ 159 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQD 159 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEEC
Confidence 000 0000 00000 000 0 011345678888888899999999999999999875
Q ss_pred CCCCcEEEEE--cc---eEEEeCEEEEeeCCCCC
Q 037065 121 HASGFWRVQT--QD---SEYISKWLVVATGENAE 149 (412)
Q Consensus 121 ~~~~~~~v~~--~~---~~~~~d~vIlAtG~~~~ 149 (412)
++...+.+.. .+ ..+.++.||+|||.++.
T Consensus 160 ~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 160 DQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 4322222333 23 24788999999997554
No 171
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.82 E-value=5.3e-08 Score=70.13 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=64.5
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAYIE 98 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. ....++..+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~---------------------------------~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP---------------------------------GFDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST---------------------------------TSSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh---------------------------------hcCHHHHHHHH
Confidence 489999999999999999999999999999875321 12356778888
Q ss_pred HHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc
Q 037065 99 SYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD 132 (412)
Q Consensus 99 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~ 132 (412)
+..++.++++++++.++++..+++ .++|++++
T Consensus 48 ~~l~~~gV~v~~~~~v~~i~~~~~--~~~V~~~~ 79 (80)
T PF00070_consen 48 EYLRKRGVEVHTNTKVKEIEKDGD--GVEVTLED 79 (80)
T ss_dssp HHHHHTTEEEEESEEEEEEEEETT--SEEEEEET
T ss_pred HHHHHCCCEEEeCCEEEEEEEeCC--EEEEEEec
Confidence 888888999999999999998884 34465543
No 172
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.82 E-value=5.1e-08 Score=93.69 Aligned_cols=61 Identities=11% Similarity=-0.085 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCC
Q 037065 88 PTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENA 148 (412)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~ 148 (412)
.....+...+.+.+.+.+++++.+++|+++...++...+.+.+.+.++.+++||+|+|.++
T Consensus 180 v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 180 ARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGHS 240 (407)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChhh
Confidence 3344556666677888899999999999997643223345777778899999999999754
No 173
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.81 E-value=3.5e-08 Score=89.43 Aligned_cols=133 Identities=23% Similarity=0.308 Sum_probs=87.2
Q ss_pred cccCeEEECCChHHHHHHHHHHHc------CCCeEEEecCCCCCcc------------------cCCC--------CCCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQ------GLPSLILERSDCLASL------------------WKHR--------TYDR 63 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~------g~~v~vie~~~~~g~~------------------~~~~--------~~~~ 63 (412)
..+||+||||||+||++|++|.+. .++|+|+|+...+|+. |.+. ..+.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~ 154 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDK 154 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccc
Confidence 468999999999999999999874 4689999999888873 2211 0111
Q ss_pred eeeecCCccccCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc----------
Q 037065 64 LKLHLPKQFCELPLF-GFPENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD---------- 132 (412)
Q Consensus 64 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---------- 132 (412)
+.....+.-+.+|.. ++.+...-.++..++.+|+-+.++.+++++.-+-.+..+-++++....-|.+++
T Consensus 155 ~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pK 234 (621)
T KOG2415|consen 155 FKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPK 234 (621)
T ss_pred eeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCcc
Confidence 111122222222221 122221223578899999999999999998766666666666654333344443
Q ss_pred ------eEEEeCEEEEeeCCCC
Q 037065 133 ------SEYISKWLVVATGENA 148 (412)
Q Consensus 133 ------~~~~~d~vIlAtG~~~ 148 (412)
-.+.++..|+|-|++.
T Consensus 235 d~FerGme~hak~TifAEGc~G 256 (621)
T KOG2415|consen 235 DTFERGMEFHAKVTIFAEGCHG 256 (621)
T ss_pred ccccccceecceeEEEeccccc
Confidence 3689999999999743
No 174
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.80 E-value=6e-08 Score=91.04 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcce-E-EEeCEEEEeeCCCCCC
Q 037065 88 PTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDS-E-YISKWLVVATGENAEP 150 (412)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~-~-~~~d~vIlAtG~~~~p 150 (412)
+...++...+.+.+.+.+.+++++++|+.|....+. .+.+.+.+. + +++++||.|.|..+.+
T Consensus 150 V~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 150 VDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred EcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 456677777777788889999999999999998842 555666663 3 9999999999975533
No 175
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.79 E-value=5.5e-08 Score=85.97 Aligned_cols=140 Identities=24% Similarity=0.302 Sum_probs=95.2
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCC---Cc--------------------------ccCCCC-CCCe
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCL---AS--------------------------LWKHRT-YDRL 64 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~---g~--------------------------~~~~~~-~~~~ 64 (412)
.+..+|+|||+|..|+++|++|+++|.++.++|+-+-. |+ .|++.. ..+.
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~ 84 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGV 84 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhce
Confidence 34689999999999999999999999999999986411 10 121100 0000
Q ss_pred eee--------cCC--------------------------ccccCC-CCCCCCCC-------CCCCCHHHHHHHHHHHHH
Q 037065 65 KLH--------LPK--------------------------QFCELP-LFGFPENF-------PKYPTKRQFIAYIESYAS 102 (412)
Q Consensus 65 ~~~--------~~~--------------------------~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 102 (412)
.+. .+. ---.+| ..++++++ .++....+-++.++..++
T Consensus 85 ~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~ 164 (399)
T KOG2820|consen 85 KLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKAR 164 (399)
T ss_pred eecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHH
Confidence 000 000 001233 44555544 345678888999999999
Q ss_pred HcCCcccccceEEEEEEcCCCC-cEEEEEcc-eEEEeCEEEEeeCCCCCCCCCC
Q 037065 103 HFKIQPKFKQAVQTALFDHASG-FWRVQTQD-SEYISKWLVVATGENAEPVFPD 154 (412)
Q Consensus 103 ~~~~~~~~~~~v~~i~~~~~~~-~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~ 154 (412)
++|+.++.+.+|+.+....+.+ ...|.+.+ ..+.++.+|+++|+|....+|.
T Consensus 165 ~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 165 ELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCc
Confidence 9999999999999888654332 34566666 4599999999999987776663
No 176
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.79 E-value=8.9e-09 Score=71.21 Aligned_cols=47 Identities=30% Similarity=0.450 Sum_probs=39.8
Q ss_pred EECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeec
Q 037065 22 IVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHL 68 (412)
Q Consensus 22 IIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~ 68 (412)
|||||++||++|..|++.|++|+|+|+++.+||.+....+++...+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~ 47 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDL 47 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEET
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEee
Confidence 89999999999999999999999999999999988776555544443
No 177
>PLN02985 squalene monooxygenase
Probab=98.78 E-value=6.9e-08 Score=94.72 Aligned_cols=135 Identities=17% Similarity=0.206 Sum_probs=76.9
Q ss_pred ccccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc----ccCC----------C-----------CCCCeeee
Q 037065 13 KSVLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS----LWKH----------R-----------TYDRLKLH 67 (412)
Q Consensus 13 ~~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~----~~~~----------~-----------~~~~~~~~ 67 (412)
+....+||+|||||++|+++|..|++.|++|+|+|+...... .+-. . ...++...
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~ 118 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVY 118 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEE
Confidence 345578999999999999999999999999999999743221 1100 0 01111110
Q ss_pred cCCc--cccCCCCC--CCCCC-CCCCCHHHHHHHHHHHHHHc-CCcccccceEEEEEEcCCCCcEEEEE--cc---eEEE
Q 037065 68 LPKQ--FCELPLFG--FPENF-PKYPTKRQFIAYIESYASHF-KIQPKFKQAVQTALFDHASGFWRVQT--QD---SEYI 136 (412)
Q Consensus 68 ~~~~--~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~--~~---~~~~ 136 (412)
.... ...++... ++... .....+..+.+.+.+.+.+. ++++..+ +|+++..++. ....|+. .+ .++.
T Consensus 119 ~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~-~v~gV~~~~~dG~~~~~~ 196 (514)
T PLN02985 119 KDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKG-VIKGVTYKNSAGEETTAL 196 (514)
T ss_pred ECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCC-EEEEEEEEcCCCCEEEEE
Confidence 0000 00111000 00000 01245677888888777665 5777654 5666655432 1112333 22 3467
Q ss_pred eCEEEEeeCCCCC
Q 037065 137 SKWLVVATGENAE 149 (412)
Q Consensus 137 ~d~vIlAtG~~~~ 149 (412)
+|.||.|+|.+|.
T Consensus 197 AdLVVgADG~~S~ 209 (514)
T PLN02985 197 APLTVVCDGCYSN 209 (514)
T ss_pred CCEEEECCCCchH
Confidence 8999999997663
No 178
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.77 E-value=7.7e-08 Score=94.63 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc------eEEEeCEEEEeeCCCCCCC
Q 037065 91 RQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD------SEYISKWLVVATGENAEPV 151 (412)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~------~~~~~d~vIlAtG~~~~p~ 151 (412)
..+...+...+.+.|++++.+++|+++..++ +.|.+++.+ .++.++.||+|+|.|+...
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l 219 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARREN--GLWHVTLEDTATGKRYTVRARALVNAAGPWVKQF 219 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHH
Confidence 4444555566788899999999999998765 567666543 4799999999999866433
No 179
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.77 E-value=6.7e-08 Score=91.09 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=71.9
Q ss_pred CeEEECCChHHHHHHHHHHHc--CCCeEEEecCCCCCc--ccCC---CCCCCe--------eeecCCccccCCCCC--CC
Q 037065 19 GPIIVGAGPSGLAVSACLSQQ--GLPSLILERSDCLAS--LWKH---RTYDRL--------KLHLPKQFCELPLFG--FP 81 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~g~--~~~~---~~~~~~--------~~~~~~~~~~~~~~~--~~ 81 (412)
||+|||||++|+++|..|++. |++|+++|+.+..++ +|.. ..-+.. ...-+.....++... +.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999887765 3322 110000 000000000000000 00
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCC
Q 037065 82 ENFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGEN 147 (412)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~ 147 (412)
..-..+.+.++.+++.+.+ +..++++.+|+.++ . +.+++ .++.++.+|.||.|.|..
T Consensus 81 -~~Y~~I~r~~f~~~l~~~l---~~~i~~~~~V~~v~--~--~~v~l-~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 81 -TAYRSMTSTRFHEGLLQAF---PEGVILGRKAVGLD--A--DGVDL-APGTRINARSVIDCRGFK 137 (370)
T ss_pred -CCceEEEHHHHHHHHHHhh---cccEEecCEEEEEe--C--CEEEE-CCCCEEEeeEEEECCCCC
Confidence 0011245677777765543 22366688888883 2 33444 344789999999999954
No 180
>PLN02661 Putative thiazole synthesis
Probab=98.77 E-value=5e-08 Score=89.06 Aligned_cols=129 Identities=20% Similarity=0.278 Sum_probs=77.4
Q ss_pred ccCeEEECCChHHHHHHHHHHHc-CCCeEEEecCCCCCc-ccCCCC-CCCeeeecC-CccccCCCCCCCCCCCCC---CC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQ-GLPSLILERSDCLAS-LWKHRT-YDRLKLHLP-KQFCELPLFGFPENFPKY---PT 89 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~-g~~v~vie~~~~~g~-~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~ 89 (412)
.+||+|||||++|+++|+.|++. |.+|+|||+....|| .|.... +..+....+ ..+..--+.++... .++ ..
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~-dgy~vv~h 170 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQ-ENYVVIKH 170 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccC-CCeeEecc
Confidence 58999999999999999999986 899999999887755 554322 111111111 01111112232211 111 13
Q ss_pred HHHHHHHHHH-HHHHcCCcccccceEEEEEEcCCCC-c----EEEEE-c-------c-eEEEeCEEEEeeCC
Q 037065 90 KRQFIAYIES-YASHFKIQPKFKQAVQTALFDHASG-F----WRVQT-Q-------D-SEYISKWLVVATGE 146 (412)
Q Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~-~----~~v~~-~-------~-~~~~~d~vIlAtG~ 146 (412)
...+.+.+.+ ..++.+++++.++.|+++..+++.. . |.+.. + + ..+.+++||+|||+
T Consensus 171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 3444455554 3445689999899998888755210 0 21111 1 1 36899999999994
No 181
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.76 E-value=1.3e-07 Score=91.56 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHHH-cCCcccccceEEEEEEcCCCCcEEEEE---cce---EEEeCEEEEeeCCCCCCC
Q 037065 88 PTKRQFIAYIESYASH-FKIQPKFKQAVQTALFDHASGFWRVQT---QDS---EYISKWLVVATGENAEPV 151 (412)
Q Consensus 88 ~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~---~~~---~~~~d~vIlAtG~~~~p~ 151 (412)
+....+.+.+.+.+.+ .+++++++++|+.+...++ +.|++.. .++ ++.+|+||+|+|.++...
T Consensus 181 VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~L 250 (497)
T PRK13339 181 VNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPL 250 (497)
T ss_pred cCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CCEEEEEEecCCCceEEEEcCEEEECCCcchHHH
Confidence 3445556666555543 4899999999999987632 5788763 333 689999999999877433
No 182
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.75 E-value=1.4e-07 Score=98.96 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=33.9
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCC
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDC 51 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~ 51 (412)
...+||+|||+|.+||++|+.+++.|.+|+|+||...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3468999999999999999999999999999999764
No 183
>PRK07121 hypothetical protein; Validated
Probab=98.75 E-value=2.9e-07 Score=90.49 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=36.4
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
...+||+|||+|.+|+++|+++++.|.+|+|+||....|+
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 3479999999999999999999999999999999877655
No 184
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.74 E-value=1.6e-07 Score=91.05 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=79.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~~~~~~~~ 203 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP---------------------------------REEPSVAAL 203 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC---------------------------------CCCHHHHHH
Confidence 46899999999999999999999999999999764310 012455666
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p 153 (412)
+++..++.+++++.+++|++++.++ +.+.+..++.++.+|.||+|+| .+|...
T Consensus 204 ~~~~l~~~GI~i~~~~~V~~i~~~~--~~v~v~~~g~~i~~D~viva~G--~~p~~~ 256 (438)
T PRK07251 204 AKQYMEEDGITFLLNAHTTEVKNDG--DQVLVVTEDETYRFDALLYATG--RKPNTE 256 (438)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEecC--CEEEEEECCeEEEcCEEEEeeC--CCCCcc
Confidence 7777788899999999999998754 4555555567899999999999 777654
No 185
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.73 E-value=1e-07 Score=97.10 Aligned_cols=61 Identities=13% Similarity=0.179 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcce-EEEeCEEEEeeCCCCCCC
Q 037065 88 PTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDS-EYISKWLVVATGENAEPV 151 (412)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~-~~~~d~vIlAtG~~~~p~ 151 (412)
.....+...+.+.+.+ +++++++++|+++...+ +.|.|.+.+. .+.+|.||+|+|.++...
T Consensus 405 v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~v~t~~g~~~~ad~VV~A~G~~s~~l 466 (662)
T PRK01747 405 LCPAELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQLDFAGGTLASAPVVVLANGHDAARF 466 (662)
T ss_pred eCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEEEEECCCcEEECCEEEECCCCCcccc
Confidence 4556677777777777 89999999999998766 6788877774 468999999999866443
No 186
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.72 E-value=1.6e-07 Score=91.48 Aligned_cols=131 Identities=16% Similarity=0.129 Sum_probs=79.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCccc-CCCCC-------CCeee---e---------cCC------
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLW-KHRTY-------DRLKL---H---------LPK------ 70 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~-~~~~~-------~~~~~---~---------~~~------ 70 (412)
|+||+|||+|.+||++|+.|++.|.+|+|+|+....+..+ .+.-. +.... + .+.
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4799999999999999999999999999999975432211 11000 00000 0 000
Q ss_pred -------ccccCCCCCCCC----CCCCC--------CCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcE-EEEE
Q 037065 71 -------QFCELPLFGFPE----NFPKY--------PTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFW-RVQT 130 (412)
Q Consensus 71 -------~~~~~~~~~~~~----~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~ 130 (412)
.+..-.+.+|.. ....+ .....+.+.+.+.+++.++++... .++.+..++ +.+ .+..
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~ 157 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFL 157 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEE
Confidence 000000112210 00001 235678888888888889998755 787776543 333 3455
Q ss_pred cceEEEeCEEEEeeCCCCCC
Q 037065 131 QDSEYISKWLVVATGENAEP 150 (412)
Q Consensus 131 ~~~~~~~d~vIlAtG~~~~p 150 (412)
.+..+.++.||+|||.++..
T Consensus 158 ~g~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 158 DGELLKFDATVIATGGFSGL 177 (466)
T ss_pred CCEEEEeCeEEECCCcCcCC
Confidence 55679999999999976543
No 187
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.71 E-value=3.1e-07 Score=89.78 Aligned_cols=130 Identities=13% Similarity=0.207 Sum_probs=79.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCC--CCcc--cCCC------CCCCeee--ecCCcc------------
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDC--LASL--WKHR------TYDRLKL--HLPKQF------------ 72 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~--~g~~--~~~~------~~~~~~~--~~~~~~------------ 72 (412)
.+||+|||+|++|+++|+.|++.|.+|+||||.+. .||. +... ....... ..+..+
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRT 83 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCC
Confidence 57999999999999999999999999999999863 3431 1110 0000000 000000
Q ss_pred ------------------ccCCCCCCCCCCCC-C----------CCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCC
Q 037065 73 ------------------CELPLFGFPENFPK-Y----------PTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHAS 123 (412)
Q Consensus 73 ------------------~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 123 (412)
..-.+.++...... . .....+...+.+.+++.+++++++++|+++..++
T Consensus 84 ~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~-- 161 (466)
T PRK08274 84 DEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDD-- 161 (466)
T ss_pred CHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--
Confidence 00001111000000 0 0135677788888888999999999999998754
Q ss_pred CcE-EEEEc-----ceEEEeCEEEEeeCCCC
Q 037065 124 GFW-RVQTQ-----DSEYISKWLVVATGENA 148 (412)
Q Consensus 124 ~~~-~v~~~-----~~~~~~d~vIlAtG~~~ 148 (412)
+.+ .+... ...+.++.||+|||.+.
T Consensus 162 g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 162 GRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred CeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 332 24332 15689999999999643
No 188
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.70 E-value=1.4e-07 Score=93.49 Aligned_cols=59 Identities=15% Similarity=-0.023 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcE-EEEEc----c--eEEEeCEEEEeeCCCCC
Q 037065 89 TKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFW-RVQTQ----D--SEYISKWLVVATGENAE 149 (412)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~----~--~~~~~d~vIlAtG~~~~ 149 (412)
....+...+...+.++|++++.+++|+++..++ +.+ .+++. + .++.+++||+|+|.|+.
T Consensus 147 dp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 147 DPFRLTAANMLDAKEHGAQILTYHEVTGLIREG--DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcC--CeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 445556666667888899999999999998765 332 24431 1 57999999999998653
No 189
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.69 E-value=3.7e-07 Score=89.18 Aligned_cols=100 Identities=12% Similarity=0.152 Sum_probs=78.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~~~~~~~~ 216 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP---------------------------------GEDAEVSKV 216 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC---------------------------------CCCHHHHHH
Confidence 46899999999999999999999999999999764310 011355666
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc---eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD---SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~d~vIlAtG~~~~p~~p 153 (412)
+.+..++.+++++.+++|++++..+ +.+.+...+ .++.+|.||+|+| ..|...
T Consensus 217 ~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~i~~D~vi~a~G--~~p~~~ 272 (461)
T TIGR01350 217 VAKALKKKGVKILTNTKVTAVEKND--DQVVYENKGGETETLTGEKVLVAVG--RKPNTE 272 (461)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEeCCcEEEEEeCEEEEecC--CcccCC
Confidence 7777788899999999999998765 455555443 3799999999999 677655
No 190
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.68 E-value=4.4e-07 Score=88.81 Aligned_cols=103 Identities=16% Similarity=0.237 Sum_probs=76.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~---------------------------------~~~~~~~~~ 226 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP---------------------------------TEDAELSKE 226 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC---------------------------------cCCHHHHHH
Confidence 36899999999999999999999999999999764310 012455667
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc---eEEEeCEEEEeeCCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD---SEYISKWLVVATGENAEPVFPD 154 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~d~vIlAtG~~~~p~~p~ 154 (412)
+.+..++.+++++.+++|+.++...+.+...+...+ .++.+|.||+|+| .+|+.+.
T Consensus 227 l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G--~~p~~~~ 285 (472)
T PRK05976 227 VARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVG--RRPNTEG 285 (472)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeC--CccCCCC
Confidence 777778889999999999999752111222222223 4699999999999 7776653
No 191
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.68 E-value=4.3e-07 Score=90.05 Aligned_cols=134 Identities=14% Similarity=0.140 Sum_probs=82.8
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc--ccCCCCCCCee--eecC---------------------
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS--LWKHRTYDRLK--LHLP--------------------- 69 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~--~~~~~~~~~~~--~~~~--------------------- 69 (412)
...+||+|||+|.|||++|+.+++.|.+|+|+||....++ .+....+.... -+.+
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~ 93 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVR 93 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 4478999999999999999999999999999999876543 11110000000 0000
Q ss_pred ----------CccccCCCCCCCCC---------CC-----------CCCCHHHHHHHHHHHHHHcCCcccccceEEEEEE
Q 037065 70 ----------KQFCELPLFGFPEN---------FP-----------KYPTKRQFIAYIESYASHFKIQPKFKQAVQTALF 119 (412)
Q Consensus 70 ----------~~~~~~~~~~~~~~---------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 119 (412)
..+.. .+.+|... .. .......+.+.+.+.+++.+++++.++.|+++..
T Consensus 94 ~~~~~s~~~i~~L~~-~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~ 172 (541)
T PRK07804 94 SLVAEGPRAVRELVA-LGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLT 172 (541)
T ss_pred HHHHHHHHHHHHHHH-cCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEE
Confidence 00000 01112110 00 0124667888888888888999999999999976
Q ss_pred cCCCC--cEEEE-----Ecc--eEEEeCEEEEeeCCCCC
Q 037065 120 DHASG--FWRVQ-----TQD--SEYISKWLVVATGENAE 149 (412)
Q Consensus 120 ~~~~~--~~~v~-----~~~--~~~~~d~vIlAtG~~~~ 149 (412)
+++.. .+.+. ..+ ..+.++.||+|||..+.
T Consensus 173 ~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 173 DGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred cCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 54211 12222 112 46899999999997554
No 192
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.67 E-value=1.9e-07 Score=86.73 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=73.1
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEe-cCCCCCcccCCCCCCCeeeecCC-------------------ccccCCCC
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILE-RSDCLASLWKHRTYDRLKLHLPK-------------------QFCELPLF 78 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie-~~~~~g~~~~~~~~~~~~~~~~~-------------------~~~~~~~~ 78 (412)
||+|||||.||+.||+.+++.|.+|+++- +.+.++..- +.+.+...... ...++...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~---Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS---CNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S---SSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc---chhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 79999999999999999999999999993 333333221 12222211000 00000000
Q ss_pred CC---CCCCC--CCCCHHHHHHHHHHHHHH-cCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCC
Q 037065 79 GF---PENFP--KYPTKRQFIAYIESYASH-FKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGE 146 (412)
Q Consensus 79 ~~---~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~ 146 (412)
.. |..+. .-..+..+..++++.++. .++++. ..+|+++..++. ...-|.+.+ ..+.+|.||+|||.
T Consensus 78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~-~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENG-KVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTT-EEEEEEETTSEEEEECEEEE-TTT
T ss_pred cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCC-eEEEEEeCCCCEEecCEEEEeccc
Confidence 00 11111 125788899999888877 466665 678999988663 334466666 78999999999993
No 193
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.66 E-value=1.7e-07 Score=90.33 Aligned_cols=128 Identities=19% Similarity=0.230 Sum_probs=76.6
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc--cCCCC-------CC------C-eee-------ecC------
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL--WKHRT-------YD------R-LKL-------HLP------ 69 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~--~~~~~-------~~------~-~~~-------~~~------ 69 (412)
||+|||+|.+||++|+.|++.|.+|+|||+.+..|+. |.... .+ . ... ...
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 8999999999999999999999999999999876652 11100 00 0 000 000
Q ss_pred -------------CccccCCCCCCCC----------------C------CC-----CCCCHHHHHHHHHHHHHHcCCccc
Q 037065 70 -------------KQFCELPLFGFPE----------------N------FP-----KYPTKRQFIAYIESYASHFKIQPK 109 (412)
Q Consensus 70 -------------~~~~~~~~~~~~~----------------~------~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 109 (412)
..+... +.+|.. . .. .......+...+.+.+++.+++++
T Consensus 81 ~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~ 159 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEEL-GVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIR 159 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHT-T--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEE
T ss_pred hhhhhhhcccceehhhhhh-cccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeee
Confidence 000000 001110 0 00 012467788889999999999999
Q ss_pred ccceEEEEEEcCCCCcE-EEEEc---c---eEEEeCEEEEeeCCCCC
Q 037065 110 FKQAVQTALFDHASGFW-RVQTQ---D---SEYISKWLVVATGENAE 149 (412)
Q Consensus 110 ~~~~v~~i~~~~~~~~~-~v~~~---~---~~~~~d~vIlAtG~~~~ 149 (412)
+++.++++..++ +++ -+... + ..++++.||+|||.+..
T Consensus 160 ~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 160 FNTRVTDLITED--GRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp ESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred ccceeeeEEEeC--CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 999999999875 332 23333 2 57899999999996554
No 194
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.64 E-value=4.1e-07 Score=87.71 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcE-EEEEcceEEEeCEEEEeeCCCCC
Q 037065 89 TKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFW-RVQTQDSEYISKWLVVATGENAE 149 (412)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~~~~~~~d~vIlAtG~~~~ 149 (412)
....+...+.+.+++.+++++.+++|++++.++ +.+ .+++.+.++.+|+||+|+|.++.
T Consensus 199 ~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 199 DCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGGGVITADAYVVALGSYST 258 (416)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCCcEEeCCEEEECCCcchH
Confidence 345667777777888899999999999998765 443 46667788999999999997654
No 195
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.63 E-value=6.6e-07 Score=89.20 Aligned_cols=129 Identities=12% Similarity=0.182 Sum_probs=77.6
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCC-C-C-cccCCC---------CCCCe-----------------e
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDC-L-A-SLWKHR---------TYDRL-----------------K 65 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~-~-g-~~~~~~---------~~~~~-----------------~ 65 (412)
....+|+|||||++||++|+.|++.|++|+|+|+.+. . + +.+... ....+ .
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 3468999999999999999999999999999999751 1 1 111000 00000 0
Q ss_pred e----ecCCc--cccCCCCCC-CC-CCC--CCCCHHHHHHHHHHHHHHcCCc-ccccceEEEEEEcCCCCcEEEEEcc-e
Q 037065 66 L----HLPKQ--FCELPLFGF-PE-NFP--KYPTKRQFIAYIESYASHFKIQ-PKFKQAVQTALFDHASGFWRVQTQD-S 133 (412)
Q Consensus 66 ~----~~~~~--~~~~~~~~~-~~-~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~v~~~~-~ 133 (412)
. +.... ...+..... .. ..+ ..+++..+.+.|.+. .+.. ++++++|+++...+ +.+++.+.+ .
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~~~i~~g~~V~~I~~~~--d~VtV~~~dG~ 233 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGEDVIRNESNVVDFEDSG--DKVTVVLENGQ 233 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCCCEEEcCCEEEEEEEeC--CEEEEEECCCC
Confidence 0 00000 001110000 00 000 124566777766442 3333 46788999998766 667777766 6
Q ss_pred EEEeCEEEEeeCCCC
Q 037065 134 EYISKWLVVATGENA 148 (412)
Q Consensus 134 ~~~~d~vIlAtG~~~ 148 (412)
++.+|.||.|.|.++
T Consensus 234 ti~aDlVVGADG~~S 248 (668)
T PLN02927 234 RYEGDLLVGADGIWS 248 (668)
T ss_pred EEEcCEEEECCCCCc
Confidence 799999999999866
No 196
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.63 E-value=9.2e-08 Score=68.86 Aligned_cols=37 Identities=30% Similarity=0.517 Sum_probs=33.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccc
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPR 218 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~ 218 (412)
+++|||+|.+|+|+|..|++.+.+|+++++++ ++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~-~~~~~ 37 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD-RLLPG 37 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS-SSSTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc-hhhhh
Confidence 68999999999999999999999999999999 55533
No 197
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.63 E-value=5.2e-07 Score=86.20 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=83.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+++|||||+-|+-.|..+++.|.+|+|+|+.+.+-. ....++.+.
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp---------------------------------~~D~ei~~~ 219 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP---------------------------------GEDPEISKE 219 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC---------------------------------cCCHHHHHH
Confidence 46799999999999999999999999999999885421 123678888
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc---eEEEeCEEEEeeCCCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD---SEYISKWLVVATGENAEPVFPDV 155 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~d~vIlAtG~~~~p~~p~~ 155 (412)
+.+..++.++.++.+++|+.++..++ ...+..++ .++.+|+|++|+| .+|+...+
T Consensus 220 ~~~~l~~~gv~i~~~~~v~~~~~~~~--~v~v~~~~g~~~~~~ad~vLvAiG--R~Pn~~~L 277 (454)
T COG1249 220 LTKQLEKGGVKILLNTKVTAVEKKDD--GVLVTLEDGEGGTIEADAVLVAIG--RKPNTDGL 277 (454)
T ss_pred HHHHHHhCCeEEEccceEEEEEecCC--eEEEEEecCCCCEEEeeEEEEccC--CccCCCCC
Confidence 88888887899999999999987663 35566655 2789999999999 88888754
No 198
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.63 E-value=4.7e-07 Score=88.79 Aligned_cols=130 Identities=16% Similarity=0.189 Sum_probs=79.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc--ccCCCCCCCee--eecCCcc--------------------
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS--LWKHRTYDRLK--LHLPKQF-------------------- 72 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~--~~~~~~~~~~~--~~~~~~~-------------------- 72 (412)
.+||+|||+|.|||++|+.+++.|. |+|+||.+..++ .|......... .+.+...
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4699999999999999999999997 999999865443 12111000000 0000000
Q ss_pred ----------ccCCCCCCCCC--------------C-----CCCCCHHHHHHHHHHHHHH-cCCcccccceEEEEEEcCC
Q 037065 73 ----------CELPLFGFPEN--------------F-----PKYPTKRQFIAYIESYASH-FKIQPKFKQAVQTALFDHA 122 (412)
Q Consensus 73 ----------~~~~~~~~~~~--------------~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~ 122 (412)
..-.+.+|... . ....+...+.+.+.+.+++ .+++++.++.|+++..++
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~- 159 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET- 159 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-
Confidence 00001111100 0 0012456788888887776 689999999999987654
Q ss_pred CCcEE-EEEcc----eEEEeCEEEEeeCCCCC
Q 037065 123 SGFWR-VQTQD----SEYISKWLVVATGENAE 149 (412)
Q Consensus 123 ~~~~~-v~~~~----~~~~~d~vIlAtG~~~~ 149 (412)
+.+. +...+ ..+.++.||+|||.++.
T Consensus 160 -g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 160 -GRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred -CEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 3322 33332 47899999999997654
No 199
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.62 E-value=4.3e-07 Score=86.29 Aligned_cols=100 Identities=13% Similarity=0.169 Sum_probs=78.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . .....+...
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------~-~~~~~~~~~ 188 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------------------S-LMPPEVSSR 188 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------------------h-hCCHHHHHH
Confidence 46899999999999999999999999999999764321 0 011345566
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVF 152 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~ 152 (412)
+++..++.+++++++++|.++..+. ..+.+.+.+ .++.+|.||+|+| .+|+.
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~g~~i~~D~vI~a~G--~~p~~ 241 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTD--SGIRATLDSGRSIEVDAVIAAAG--LRPNT 241 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccC--CEEEEEEcCCcEEECCEEEECcC--CCcch
Confidence 7777788899999999999998655 456676665 6899999999999 55543
No 200
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.62 E-value=1e-06 Score=88.17 Aligned_cols=138 Identities=18% Similarity=0.066 Sum_probs=81.6
Q ss_pred ccccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc--cCCCCCCC----eeeecCCccc-------------
Q 037065 13 KSVLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL--WKHRTYDR----LKLHLPKQFC------------- 73 (412)
Q Consensus 13 ~~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~--~~~~~~~~----~~~~~~~~~~------------- 73 (412)
|....+||+|||+|.|||+||+.+++.|.+|+|||+....++. +....... ..-+.+...+
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~ 87 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQ 87 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCH
Confidence 3345789999999999999999999999999999997543331 11100000 0000000000
Q ss_pred -----------------cCCCCCCCC---------CCCC-----------------CCCHHHHHHHHHHHHHHcCCcccc
Q 037065 74 -----------------ELPLFGFPE---------NFPK-----------------YPTKRQFIAYIESYASHFKIQPKF 110 (412)
Q Consensus 74 -----------------~~~~~~~~~---------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~ 110 (412)
.-.+.+|.. ...+ -.....+...+.+.+.+.+++++.
T Consensus 88 ~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~~ 167 (591)
T PRK07057 88 DAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQFFV 167 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCEEEe
Confidence 000111110 0000 013456788888878888999999
Q ss_pred cceEEEEEEcCCCCcEEEEE---cc---eEEEeCEEEEeeCCCCCC
Q 037065 111 KQAVQTALFDHASGFWRVQT---QD---SEYISKWLVVATGENAEP 150 (412)
Q Consensus 111 ~~~v~~i~~~~~~~~~~v~~---~~---~~~~~d~vIlAtG~~~~p 150 (412)
++.++.+..+++....-+.. .+ ..+.++.||+|||.....
T Consensus 168 ~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 168 EWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred CcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 99999887643211222222 12 467899999999975543
No 201
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.62 E-value=6e-08 Score=93.73 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCC
Q 037065 88 PTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGE 146 (412)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~ 146 (412)
..+..+.++|.+.+.+.|++++.+ +|+.+..+++.....|++++ .++++|++|-|||.
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGR 209 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGG
T ss_pred EeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCc
Confidence 578999999999999999998866 58888877743233566665 78999999999994
No 202
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.60 E-value=2.2e-06 Score=79.31 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCC
Q 037065 90 KRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENA 148 (412)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~ 148 (412)
..++.+-+.++.+..+++++++++|+++...+.. ...+.+.+ .++.+|+||+|.|..+
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~-~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNE-VLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCc-eEEEEccCCcEEecCEEEEccCcch
Confidence 4566778888899999999999999999987742 34456655 6999999999999744
No 203
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.60 E-value=7.7e-07 Score=86.73 Aligned_cols=100 Identities=15% Similarity=0.136 Sum_probs=77.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~---------------------------------~~d~e~~~~ 216 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP---------------------------------GEDEDIAHI 216 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc---------------------------------cccHHHHHH
Confidence 36899999999999999999999999999999764310 012456677
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc--eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD--SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~--~~~~~d~vIlAtG~~~~p~~p 153 (412)
+.+..++.+++++++++|+.++..+ ..+.+..++ .++.+|.||+|+| .+|+..
T Consensus 217 l~~~L~~~GI~i~~~~~V~~i~~~~--~~v~~~~~g~~~~i~~D~vivA~G--~~p~~~ 271 (458)
T PRK06912 217 LREKLENDGVKIFTGAALKGLNSYK--KQALFEYEGSIQEVNAEFVLVSVG--RKPRVQ 271 (458)
T ss_pred HHHHHHHCCCEEEECCEEEEEEEcC--CEEEEEECCceEEEEeCEEEEecC--CccCCC
Confidence 7777888899999999999998654 344444333 4799999999999 777664
No 204
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.59 E-value=8.3e-07 Score=86.91 Aligned_cols=130 Identities=13% Similarity=0.134 Sum_probs=77.0
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc-ccCCCC----CCCee---eecCCc----c-----ccCCCCC-
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS-LWKHRT----YDRLK---LHLPKQ----F-----CELPLFG- 79 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~-~~~~~~----~~~~~---~~~~~~----~-----~~~~~~~- 79 (412)
+||+|||+|++|+.+|..+++.|.+|+|+|+....++ ...... ..+.. ++.... . .++....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 6899999999999999999999999999998743221 110000 00000 000000 0 0011000
Q ss_pred --CCCCC--CCCCCHHHHHHHHHHHHHHc-CCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCC
Q 037065 80 --FPENF--PKYPTKRQFIAYIESYASHF-KIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENA 148 (412)
Q Consensus 80 --~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~ 148 (412)
.+..+ ..-..+..+..++++.+++. ++.++ ...|+.+..+.+...+.|.+.+ ..+.++.||+|||.+.
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 01111 11245667778888878777 66665 4567777654222344566665 5799999999999643
No 205
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.58 E-value=7.6e-07 Score=86.98 Aligned_cols=100 Identities=15% Similarity=0.179 Sum_probs=78.7
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++++|||||+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~~~~~~~~ 218 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP---------------------------------GEDKEISKL 218 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC---------------------------------cCCHHHHHH
Confidence 36899999999999999999999999999999764310 012456667
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc----eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD----SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~----~~~~~d~vIlAtG~~~~p~~p 153 (412)
+++..++.+++++.+++|++++..+ +.+.+.+.+ .++.+|.||+|+| .+|...
T Consensus 219 l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~gg~~~~i~~D~vi~a~G--~~p~~~ 275 (462)
T PRK06416 219 AERALKKRGIKIKTGAKAKKVEQTD--DGVTVTLEDGGKEETLEADYVLVAVG--RRPNTE 275 (462)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEEeCCeeEEEEeCEEEEeeC--CccCCC
Confidence 7777888899999999999998765 345555432 5799999999999 676654
No 206
>PRK14694 putative mercuric reductase; Provisional
Probab=98.58 E-value=6.9e-07 Score=87.30 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=78.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+++|||+|+.|+.+|..|++.|.+|+++++...++ ....++.+.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~----------------------------------~~~~~~~~~ 223 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS----------------------------------QEDPAVGEA 223 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC----------------------------------CCCHHHHHH
Confidence 3689999999999999999999999999998743211 012455677
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p 153 (412)
+++..++.+++++.++.|..++.++ +.+.+.++++++.+|.||+|+| .+|+..
T Consensus 224 l~~~l~~~GI~v~~~~~v~~i~~~~--~~~~v~~~~~~i~~D~vi~a~G--~~pn~~ 276 (468)
T PRK14694 224 IEAAFRREGIEVLKQTQASEVDYNG--REFILETNAGTLRAEQLLVATG--RTPNTE 276 (468)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEECCCEEEeCEEEEccC--CCCCcC
Confidence 7778888899999999999998655 4555666667899999999999 666654
No 207
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.57 E-value=1.2e-06 Score=87.31 Aligned_cols=131 Identities=14% Similarity=0.070 Sum_probs=79.5
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc--cCCCCCCC-e-----eeecCCc----------------
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL--WKHRTYDR-L-----KLHLPKQ---------------- 71 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~--~~~~~~~~-~-----~~~~~~~---------------- 71 (412)
..+||+|||+|.|||+||+.+++.|.+|+|+||....++. +....... + .-+.+..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 83 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD 83 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence 4689999999999999999999999999999998644431 11100000 0 0000000
Q ss_pred --------------cccCCCCCCCCC---------CC----------CCCCHHHHHHHHHHHHHHcCCcccccceEEEEE
Q 037065 72 --------------FCELPLFGFPEN---------FP----------KYPTKRQFIAYIESYASHFKIQPKFKQAVQTAL 118 (412)
Q Consensus 72 --------------~~~~~~~~~~~~---------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 118 (412)
...--+.+|... +. .......+...+.+.+.+.+++++.++.++++.
T Consensus 84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li 163 (566)
T PRK06452 84 AAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLV 163 (566)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEE
Confidence 000011122100 00 011355677777777777799999999999988
Q ss_pred EcCCCCcEE-EEEc---c---eEEEeCEEEEeeCCCC
Q 037065 119 FDHASGFWR-VQTQ---D---SEYISKWLVVATGENA 148 (412)
Q Consensus 119 ~~~~~~~~~-v~~~---~---~~~~~d~vIlAtG~~~ 148 (412)
.++ +.+. +... + ..+.++.||+|||...
T Consensus 164 ~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 164 TDN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred EEC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 754 3322 2221 2 4689999999999654
No 208
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.57 E-value=6e-07 Score=85.81 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=76.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+... .....+.++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~ 191 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR--------------------------------NAPPPVQRY 191 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh--------------------------------hcCHHHHHH
Confidence 368999999999999999999999999999997643210 012345667
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVF 152 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~ 152 (412)
+.+..++.+++++++++|+++.. + +.+.+.+.+ .++.+|.||+|+| .+|+.
T Consensus 192 l~~~l~~~GV~i~~~~~V~~i~~-~--~~~~v~l~~g~~i~aD~Vv~a~G--~~pn~ 243 (396)
T PRK09754 192 LLQRHQQAGVRILLNNAIEHVVD-G--EKVELTLQSGETLQADVVIYGIG--ISAND 243 (396)
T ss_pred HHHHHHHCCCEEEeCCeeEEEEc-C--CEEEEEECCCCEEECCEEEECCC--CChhh
Confidence 77777888999999999999875 2 344566555 6799999999999 55553
No 209
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.56 E-value=6.2e-07 Score=89.68 Aligned_cols=131 Identities=13% Similarity=0.118 Sum_probs=79.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcC--CCeEEEecCCCCCc--ccCCCC----CCCee-eecCCccc--------------
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQG--LPSLILERSDCLAS--LWKHRT----YDRLK-LHLPKQFC-------------- 73 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~vie~~~~~g~--~~~~~~----~~~~~-~~~~~~~~-------------- 73 (412)
.+||+|||+|.|||+||+.|++.| .+|+|+||....++ .+...- ..... .+.+...+
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 579999999999999999999874 89999999865443 111110 00000 00000000
Q ss_pred ----------------cCCCCCCCCC-------------------CCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEE
Q 037065 74 ----------------ELPLFGFPEN-------------------FPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTAL 118 (412)
Q Consensus 74 ----------------~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 118 (412)
.-.+.+|+.. +........+...+.+.+.+.+++++.++.|+++.
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~ 162 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLI 162 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEE
Confidence 0001112100 00112456788888887888899999999999987
Q ss_pred EcCCCCcEE----EEEcc---eEEEeCEEEEeeCCCCC
Q 037065 119 FDHASGFWR----VQTQD---SEYISKWLVVATGENAE 149 (412)
Q Consensus 119 ~~~~~~~~~----v~~~~---~~~~~d~vIlAtG~~~~ 149 (412)
.++ +... +...+ ..+.++.||+|||.++.
T Consensus 163 ~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 163 LED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred EEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 643 3211 12222 36899999999997654
No 210
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.56 E-value=1.1e-06 Score=85.98 Aligned_cols=101 Identities=22% Similarity=0.267 Sum_probs=78.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 212 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-------------------------------R--EEPEISAA 212 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-------------------------------c--cCHHHHHH
Confidence 36899999999999999999999999999999764310 0 12345667
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEc----ceEEEeCEEEEeeCCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQ----DSEYISKWLVVATGENAEPVFPD 154 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~----~~~~~~d~vIlAtG~~~~p~~p~ 154 (412)
+++..++.+++++.+++|+.+..++ +.+.+.+. ..++.+|.||+|+| .+|+...
T Consensus 213 l~~~l~~~gV~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~i~~D~ViiA~G--~~p~~~~ 270 (463)
T TIGR02053 213 VEEALAEEGIEVVTSAQVKAVSVRG--GGKIITVEKPGGQGEVEADELLVATG--RRPNTDG 270 (463)
T ss_pred HHHHHHHcCCEEEcCcEEEEEEEcC--CEEEEEEEeCCCceEEEeCEEEEeEC--CCcCCCC
Confidence 7777778899999999999998754 34444442 26799999999999 7776653
No 211
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.56 E-value=9.2e-07 Score=86.42 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=79.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~d~~~~~~ 221 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS---------------------------------FLDDEISDA 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC---------------------------------cCCHHHHHH
Confidence 47899999999999999999999999999999764321 012455667
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p 153 (412)
+.+.+++.+++++.+++|+.+...+ +.+.+++.+ .++.+|.||+|+| .+|+..
T Consensus 222 l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~g~~i~~D~vi~a~G--~~p~~~ 275 (461)
T PRK05249 222 LSYHLRDSGVTIRHNEEVEKVEGGD--DGVIVHLKSGKKIKADCLLYANG--RTGNTD 275 (461)
T ss_pred HHHHHHHcCCEEEECCEEEEEEEeC--CeEEEEECCCCEEEeCEEEEeec--CCcccc
Confidence 7777778899999999999998755 455566544 6799999999999 666654
No 212
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.56 E-value=8.6e-07 Score=86.39 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc------eEEEeCEEEEeeCCCCCC
Q 037065 88 PTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD------SEYISKWLVVATGENAEP 150 (412)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~------~~~~~d~vIlAtG~~~~p 150 (412)
+....+...+.+.+++.+++++++++|+++...++ +.|.+.+.+ .++.+|+||+|+|.++..
T Consensus 175 Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~ 242 (483)
T TIGR01320 175 VDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALP 242 (483)
T ss_pred ECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CeEEEEEeeccCCceEEEECCEEEECCCcchHH
Confidence 35566777777778888999999999999987542 356665432 368999999999986643
No 213
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.56 E-value=8.6e-07 Score=88.63 Aligned_cols=133 Identities=13% Similarity=0.063 Sum_probs=80.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc--ccCCCCCCCe----eeecCCccc-----------------
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS--LWKHRTYDRL----KLHLPKQFC----------------- 73 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~--~~~~~~~~~~----~~~~~~~~~----------------- 73 (412)
.+||+|||+|.|||+||+.+++.|.+|+|+||....++ .|........ .-+.+...+
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~ 86 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE 86 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 57999999999999999999999999999999865433 1111000000 000000000
Q ss_pred -------------cCCCCCCCCC---------CCCC-----------------CCHHHHHHHHHHHHHHcCCcccccceE
Q 037065 74 -------------ELPLFGFPEN---------FPKY-----------------PTKRQFIAYIESYASHFKIQPKFKQAV 114 (412)
Q Consensus 74 -------------~~~~~~~~~~---------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~v 114 (412)
.-.+.+|... +.+. .....+...+.+.+.+.+++++.++.+
T Consensus 87 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~ 166 (588)
T PRK08958 87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYA 166 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcEE
Confidence 0011122110 0110 135677888877777889999999999
Q ss_pred EEEEEcCCCCcEEEEE---cc---eEEEeCEEEEeeCCCCC
Q 037065 115 QTALFDHASGFWRVQT---QD---SEYISKWLVVATGENAE 149 (412)
Q Consensus 115 ~~i~~~~~~~~~~v~~---~~---~~~~~d~vIlAtG~~~~ 149 (412)
+++..+++....-+.. .+ ..+.++.||+|||....
T Consensus 167 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 167 LDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred EEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 9988643211112222 12 46889999999997554
No 214
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=5.6e-07 Score=90.20 Aligned_cols=135 Identities=15% Similarity=0.107 Sum_probs=81.0
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc--cCCCCCCC----eeeecCCcc-----------------
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL--WKHRTYDR----LKLHLPKQF----------------- 72 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~--~~~~~~~~----~~~~~~~~~----------------- 72 (412)
..+||+|||+|.+||+||+.+++.|.+|+|+||....++. +...-... ...+.+...
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv 90 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAI 90 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHH
Confidence 4689999999999999999999999999999998643331 11100000 000000000
Q ss_pred -------------ccCCCCCCCC---------CCCC------------------CCCHHHHHHHHHHHHHHcCCcccccc
Q 037065 73 -------------CELPLFGFPE---------NFPK------------------YPTKRQFIAYIESYASHFKIQPKFKQ 112 (412)
Q Consensus 73 -------------~~~~~~~~~~---------~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (412)
..-.+.+|.. .+.+ ......+...+.+.+.+.+++++.++
T Consensus 91 ~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~~~~ 170 (598)
T PRK09078 91 EYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFFIEY 170 (598)
T ss_pred HHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCEEEEeE
Confidence 0000111110 0000 01345678888888888899999999
Q ss_pred eEEEEEEcCCCCcEEEEE---cc---eEEEeCEEEEeeCCCCCC
Q 037065 113 AVQTALFDHASGFWRVQT---QD---SEYISKWLVVATGENAEP 150 (412)
Q Consensus 113 ~v~~i~~~~~~~~~~v~~---~~---~~~~~d~vIlAtG~~~~p 150 (412)
.++++..+++....-+.. .+ ..+.++.||+|||.....
T Consensus 171 ~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 171 FALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred EEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 999987654211111222 22 478999999999976543
No 215
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=1e-06 Score=88.21 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=35.3
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcC---CCeEEEecCCCCCc
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQG---LPSLILERSDCLAS 54 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g---~~v~vie~~~~~g~ 54 (412)
...+||+|||+|.|||+||+.+++.| .+|+|+||....++
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 44689999999999999999999998 89999999875544
No 216
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.54 E-value=1.4e-06 Score=87.30 Aligned_cols=129 Identities=18% Similarity=0.147 Sum_probs=77.5
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc--cCCCCC----CCeee-ecCCcc-------------------
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL--WKHRTY----DRLKL-HLPKQF------------------- 72 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~--~~~~~~----~~~~~-~~~~~~------------------- 72 (412)
||+|||+|.+|+++|+.+++.|.+|+|+||....++. +...-. ..... +.+...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 7999999999999999999999999999998654331 111000 00000 000000
Q ss_pred -----------ccCCCCCCC---CC------C----------CCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCC
Q 037065 73 -----------CELPLFGFP---EN------F----------PKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHA 122 (412)
Q Consensus 73 -----------~~~~~~~~~---~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 122 (412)
..-.+.+|. +. + ........+...+.+.+.+.++++++++.|+++..++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~- 159 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDD- 159 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-
Confidence 000011110 00 0 0011345677777777777899999999999997654
Q ss_pred CCcEE-EEE---cc---eEEEeCEEEEeeCCCCC
Q 037065 123 SGFWR-VQT---QD---SEYISKWLVVATGENAE 149 (412)
Q Consensus 123 ~~~~~-v~~---~~---~~~~~d~vIlAtG~~~~ 149 (412)
+.+. +.. .+ ..+.++.||+|||.++.
T Consensus 160 -g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 160 -GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred -CEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 3321 221 22 36899999999996553
No 217
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.54 E-value=1.1e-06 Score=84.57 Aligned_cols=57 Identities=19% Similarity=0.220 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc------eEEEeCEEEEeeCCCCCC
Q 037065 92 QFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD------SEYISKWLVVATGENAEP 150 (412)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~------~~~~~d~vIlAtG~~~~p 150 (412)
.+.-..-..+...|..++..++|+.+..++ +.|-|.+.+ ..++++.||.|||.|...
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREG--GVWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecC--CEEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 334444556777799999899999999988 466677665 469999999999986543
No 218
>PRK14727 putative mercuric reductase; Provisional
Probab=98.54 E-value=1.3e-06 Score=85.66 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=78.1
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAYI 97 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
++++|||+|+.|+.+|..|++.|.+|+++++...+. ....++.+.+
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~----------------------------------~~d~~~~~~l 234 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF----------------------------------REDPLLGETL 234 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC----------------------------------cchHHHHHHH
Confidence 689999999999999999999999999998743111 0124566777
Q ss_pred HHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCC
Q 037065 98 ESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 98 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p 153 (412)
++..++.+++++.+++|+.+...+ +.+.+...++++.+|.||+|+| ..|+..
T Consensus 235 ~~~L~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~g~i~aD~VlvA~G--~~pn~~ 286 (479)
T PRK14727 235 TACFEKEGIEVLNNTQASLVEHDD--NGFVLTTGHGELRAEKLLISTG--RHANTH 286 (479)
T ss_pred HHHHHhCCCEEEcCcEEEEEEEeC--CEEEEEEcCCeEEeCEEEEccC--CCCCcc
Confidence 777888899999999999998655 4566666667899999999999 666554
No 219
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.53 E-value=1.4e-06 Score=87.82 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=33.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCL 52 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~ 52 (412)
.+||+|||+|.|||+||+.+++.|.+|+|+|+...+
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 579999999999999999999999999999986544
No 220
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.53 E-value=7.5e-07 Score=89.48 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=81.9
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc--cCCCCCCCee----eecCCcc-c---------------
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL--WKHRTYDRLK----LHLPKQF-C--------------- 73 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~--~~~~~~~~~~----~~~~~~~-~--------------- 73 (412)
..+||+|||+|.|||+||+.+++.|.+|+|+||....++. +......... -+.+... .
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv 107 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI 107 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 3689999999999999999999999999999998755441 1111110000 0000000 0
Q ss_pred --------------cCCCCCCCCC---------CCCC------------------CCHHHHHHHHHHHHHHcCCcccccc
Q 037065 74 --------------ELPLFGFPEN---------FPKY------------------PTKRQFIAYIESYASHFKIQPKFKQ 112 (412)
Q Consensus 74 --------------~~~~~~~~~~---------~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (412)
.-.+.+|... +.+. .+...+...+.+.+.+.+++++.++
T Consensus 108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~ 187 (617)
T PTZ00139 108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEY 187 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEece
Confidence 0001112100 0000 1356788888888888899999999
Q ss_pred eEEEEEEcCCCCcE-EEEE---cc---eEEEeCEEEEeeCCCCCC
Q 037065 113 AVQTALFDHASGFW-RVQT---QD---SEYISKWLVVATGENAEP 150 (412)
Q Consensus 113 ~v~~i~~~~~~~~~-~v~~---~~---~~~~~d~vIlAtG~~~~p 150 (412)
.++++..+++ +.. -+.. .+ ..+.++.||+|||.....
T Consensus 188 ~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 188 FALDLIMDED-GECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred EEEEEEECCC-CEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 9999876322 222 1221 12 468999999999975543
No 221
>PRK08275 putative oxidoreductase; Provisional
Probab=98.53 E-value=2.7e-06 Score=84.79 Aligned_cols=133 Identities=13% Similarity=0.162 Sum_probs=79.9
Q ss_pred cccCeEEECCChHHHHHHHHHHHc--CCCeEEEecCCCCCc-cc--CCCCCCC-ee--eecCCccc--------------
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQ--GLPSLILERSDCLAS-LW--KHRTYDR-LK--LHLPKQFC-------------- 73 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~g~-~~--~~~~~~~-~~--~~~~~~~~-------------- 73 (412)
..+||+|||+|.|||+||+.+++. |.+|+|+||.+..++ .. ....... +. .+.+..++
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 358999999999999999999987 689999999875322 21 1000000 00 00000000
Q ss_pred ----------------cCCCCCCCCC------------CC----CCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcC
Q 037065 74 ----------------ELPLFGFPEN------------FP----KYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDH 121 (412)
Q Consensus 74 ----------------~~~~~~~~~~------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 121 (412)
...+.+|... .. .......+.+.+.+.+++.+++++.++.|+++..++
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~ 167 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDA 167 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcC
Confidence 0001111100 00 012456788888888888899999999999998752
Q ss_pred CCCcE-EEE---Ecc---eEEEeCEEEEeeCCCCC
Q 037065 122 ASGFW-RVQ---TQD---SEYISKWLVVATGENAE 149 (412)
Q Consensus 122 ~~~~~-~v~---~~~---~~~~~d~vIlAtG~~~~ 149 (412)
+ +.+ -+. ..+ ..+.++.||+|||....
T Consensus 168 ~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 168 D-GRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred C-CeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 2 222 122 222 35899999999996543
No 222
>PRK06116 glutathione reductase; Validated
Probab=98.52 E-value=1.6e-06 Score=84.42 Aligned_cols=101 Identities=16% Similarity=0.145 Sum_probs=79.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~~~~~~~~ 213 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR---------------------------------GFDPDIRET 213 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc---------------------------------ccCHHHHHH
Confidence 46899999999999999999999999999998764210 012356677
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p 153 (412)
+.+..++.+++++++++|.+++.+++ +.+.+.+.+ .++.+|.||+|+| .+|+..
T Consensus 214 l~~~L~~~GV~i~~~~~V~~i~~~~~-g~~~v~~~~g~~i~~D~Vv~a~G--~~p~~~ 268 (450)
T PRK06116 214 LVEEMEKKGIRLHTNAVPKAVEKNAD-GSLTLTLEDGETLTVDCLIWAIG--REPNTD 268 (450)
T ss_pred HHHHHHHCCcEEECCCEEEEEEEcCC-ceEEEEEcCCcEEEeCEEEEeeC--CCcCCC
Confidence 77778888999999999999987543 335566555 6799999999999 666665
No 223
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.52 E-value=2.1e-06 Score=81.35 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=38.6
Q ss_pred CeEEECCChHHHHHHHHHHHcC--CCeEEEecCCCCCcccCCCCC
Q 037065 19 GPIIVGAGPSGLAVSACLSQQG--LPSLILERSDCLASLWKHRTY 61 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g--~~v~vie~~~~~g~~~~~~~~ 61 (412)
+|+|||||++||++|..|++.+ .+++|+|+.+.+||.......
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~ 46 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKI 46 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEee
Confidence 6999999999999999999998 999999999999997655433
No 224
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.52 E-value=6.2e-07 Score=85.59 Aligned_cols=61 Identities=16% Similarity=0.081 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHHcCC-cccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCC
Q 037065 88 PTKRQFIAYIESYASHFKI-QPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEP 150 (412)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p 150 (412)
.+...+...+...+.+.+. .+..++.+..++.. . ..+.+.+.+.++.+|+||+|+|.++..
T Consensus 153 ~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 153 LDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGTIEADKVVLAAGAWAGE 214 (387)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCccEEeCEEEEcCchHHHH
Confidence 3456677777777888884 45557888888875 2 567788888889999999999976543
No 225
>PRK06370 mercuric reductase; Validated
Probab=98.52 E-value=1.2e-06 Score=85.55 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=77.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~---------------------------------~~~~~~~~~ 217 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP---------------------------------REDEDVAAA 217 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc---------------------------------ccCHHHHHH
Confidence 36899999999999999999999999999999764321 012345667
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEE--cc--eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQT--QD--SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~--~~--~~~~~d~vIlAtG~~~~p~~p 153 (412)
+++..++.+++++.+++|.+++..+ +...+.. .+ .++.+|.||+|+| .+|+..
T Consensus 218 l~~~l~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~i~~D~Vi~A~G--~~pn~~ 274 (463)
T PRK06370 218 VREILEREGIDVRLNAECIRVERDG--DGIAVGLDCNGGAPEITGSHILVAVG--RVPNTD 274 (463)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEEeCCCceEEEeCEEEECcC--CCcCCC
Confidence 7777788899999999999998765 3333333 22 5799999999999 777654
No 226
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.52 E-value=1.5e-06 Score=87.57 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=34.5
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA 53 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g 53 (412)
..+||+|||+|.|||+||+.+++.|.+|+|||+....+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 36899999999999999999999999999999986543
No 227
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.52 E-value=1.5e-06 Score=84.46 Aligned_cols=100 Identities=16% Similarity=0.229 Sum_probs=79.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++.+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~ 204 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP-------------------------------R--EDRDIADN 204 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC-------------------------------C--cCHHHHHH
Confidence 36899999999999999999999999999999764210 0 12455677
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p 153 (412)
+.+.+++.+++++.+++|++++.++ +.+.+..+++++.+|.|++|+| .+|+..
T Consensus 205 l~~~l~~~gV~v~~~~~v~~i~~~~--~~v~v~~~~g~i~~D~vl~a~G--~~pn~~ 257 (441)
T PRK08010 205 IATILRDQGVDIILNAHVERISHHE--NQVQVHSEHAQLAVDALLIASG--RQPATA 257 (441)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEcCCeEEeCEEEEeec--CCcCCC
Confidence 7778888899999999999998755 4556666667799999999999 666654
No 228
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.51 E-value=1.1e-06 Score=85.36 Aligned_cols=101 Identities=20% Similarity=0.280 Sum_probs=78.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ....++.++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------~--~~~~~~~~~ 196 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP------------------------------D--SFDKEITDV 196 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc------------------------------h--hcCHHHHHH
Confidence 36899999999999999999999999999998763210 0 012566778
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p 153 (412)
+++.+++.+++++++++|++++.++ ....+.+++.++.+|.||+|+| ..|..+
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~~~i~~d~vi~a~G--~~p~~~ 249 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIGED--KVEGVVTDKGEYEADVVIVATG--VKPNTE 249 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEecCC--cEEEEEeCCCEEEcCEEEECcC--CCcCHH
Confidence 8888888999999999999996533 3344556667899999999999 666543
No 229
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.51 E-value=2.3e-06 Score=85.68 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=33.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA 53 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g 53 (412)
++||+|||+|.|||+||+.+++.|.+|+|+||....+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 5699999999999999999999999999999986544
No 230
>PTZ00367 squalene epoxidase; Provisional
Probab=98.50 E-value=1e-06 Score=87.20 Aligned_cols=35 Identities=37% Similarity=0.444 Sum_probs=33.0
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999875
No 231
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.49 E-value=1.6e-06 Score=86.79 Aligned_cols=43 Identities=21% Similarity=0.467 Sum_probs=37.5
Q ss_pred cccccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 12 TKSVLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 12 ~~~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
+.....+||+|||+|++|+++|+.++++|.+|+|+||....||
T Consensus 4 ~~~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 4 MTNELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred cCcCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 3334478999999999999999999999999999999876664
No 232
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.49 E-value=5.5e-07 Score=82.18 Aligned_cols=150 Identities=16% Similarity=0.199 Sum_probs=96.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCcccccccc-CC-----ChhhHHHHHHHhcc---hHHHHHHHHHHHH
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIF-GF-----STFGIAMALLRWFP---LRLVDKILLLMAN 250 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 250 (412)
..|+|||+|++|+=.|..+++.|.+|.++.+.+ .+-..... |. +.......+....| ......+.++..+
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~-k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGP-KLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCc-cccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 469999999999999999999999999999988 33221111 11 22222333344444 3334444444444
Q ss_pred HhhcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeCC----eEEecCCcEecccEEEEc
Q 037065 251 ITLGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITKN----GARFTDGQEKEIDAIILA 324 (412)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~~----~v~~~~g~~~~~D~vi~a 324 (412)
.+..-.+++|+.......=.+.....+...+-+-++..+++.+|++++. |.++..+ .+.+++|+++.||.+|+|
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilA 162 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILA 162 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEe
Confidence 4444455666542222222222223334455666789999999999987 8887755 367788889999999999
Q ss_pred CCCCCC
Q 037065 325 TGYKSN 330 (412)
Q Consensus 325 tG~~p~ 330 (412)
||-...
T Consensus 163 tGG~S~ 168 (408)
T COG2081 163 TGGKSW 168 (408)
T ss_pred cCCcCC
Confidence 995554
No 233
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.49 E-value=1.1e-06 Score=85.79 Aligned_cols=60 Identities=17% Similarity=0.311 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHcC-CcccccceEEEEEEcCCCCcEEEEEcc------eEEEeCEEEEeeCCCCCC
Q 037065 90 KRQFIAYIESYASHFK-IQPKFKQAVQTALFDHASGFWRVQTQD------SEYISKWLVVATGENAEP 150 (412)
Q Consensus 90 ~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~v~~~~------~~~~~d~vIlAtG~~~~p 150 (412)
...+.+.+.+.+++.+ ++++++++|+++...++ +.|.+.+.+ .++.+++||+|+|.++.+
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~ 248 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALP 248 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CCEEEEEEEcCCCceEEEEcCEEEECCCcchHH
Confidence 3456666777777776 89999999999987553 357776532 269999999999987643
No 234
>PRK13748 putative mercuric reductase; Provisional
Probab=98.49 E-value=1.5e-06 Score=87.13 Aligned_cols=99 Identities=17% Similarity=0.146 Sum_probs=78.9
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++++|||+|+.|+.+|..|++.|.+|+++++...+. ....++.+.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~----------------------------------~~d~~~~~~ 315 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF----------------------------------REDPAIGEA 315 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc----------------------------------ccCHHHHHH
Confidence 3689999999999999999999999999999853211 012456677
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p 153 (412)
+++..++.+++++.++.|+.+..++ +.+.+.+.++++.+|.||+|+| .+|+..
T Consensus 316 l~~~l~~~gI~i~~~~~v~~i~~~~--~~~~v~~~~~~i~~D~vi~a~G--~~pn~~ 368 (561)
T PRK13748 316 VTAAFRAEGIEVLEHTQASQVAHVD--GEFVLTTGHGELRADKLLVATG--RAPNTR 368 (561)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEecCCeEEeCEEEEccC--CCcCCC
Confidence 7777888899999999999998654 4556666667899999999999 777664
No 235
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.49 E-value=1.1e-06 Score=88.29 Aligned_cols=135 Identities=16% Similarity=0.118 Sum_probs=81.1
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc--cCCCCCCCe----eeecCCcc-----------------
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL--WKHRTYDRL----KLHLPKQF----------------- 72 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~--~~~~~~~~~----~~~~~~~~----------------- 72 (412)
..+||+|||+|.|||+||+.+++.|.+|+|+||....++. +....+... .-+.+...
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv 128 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 128 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 3589999999999999999999999999999998654431 111100000 00000000
Q ss_pred -------------ccCCCCCCCCC---------CCC------------------CCCHHHHHHHHHHHHHHcCCcccccc
Q 037065 73 -------------CELPLFGFPEN---------FPK------------------YPTKRQFIAYIESYASHFKIQPKFKQ 112 (412)
Q Consensus 73 -------------~~~~~~~~~~~---------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (412)
..-.+.+|... +.+ ..+...+.+.+.+.+.+.+++++.++
T Consensus 129 ~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~ 208 (635)
T PLN00128 129 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEY 208 (635)
T ss_pred HHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEee
Confidence 00001122100 000 01356677888787878899999999
Q ss_pred eEEEEEEcCCCCcEEEEE---cc---eEEEeCEEEEeeCCCCCC
Q 037065 113 AVQTALFDHASGFWRVQT---QD---SEYISKWLVVATGENAEP 150 (412)
Q Consensus 113 ~v~~i~~~~~~~~~~v~~---~~---~~~~~d~vIlAtG~~~~p 150 (412)
.++++..+++....-+.. .+ ..+.++.||+|||.....
T Consensus 209 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 209 FALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred EEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 999877653211111222 12 578999999999976543
No 236
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.49 E-value=4e-07 Score=93.88 Aligned_cols=117 Identities=12% Similarity=0.159 Sum_probs=73.3
Q ss_pred CeEEECCChHHHHHHHHHHHc--CCCeEEEecCCCC---C-cc-cCCCCCCCeeeecC------------Cccc--cCCC
Q 037065 19 GPIIVGAGPSGLAVSACLSQQ--GLPSLILERSDCL---A-SL-WKHRTYDRLKLHLP------------KQFC--ELPL 77 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~---g-~~-~~~~~~~~~~~~~~------------~~~~--~~~~ 77 (412)
+|+|||||++||++|+.|++. |++|+|+|+.+.. | |. ...+....+....+ .... ...+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 699999999999999999998 8999999998753 2 10 00000000000000 0000 0000
Q ss_pred CCCCCCCCC--CCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCC
Q 037065 78 FGFPENFPK--YPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENA 148 (412)
Q Consensus 78 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~ 148 (412)
......... ...+..+.+.|.+.+.+.+++++++++|+++... ...+|.||.|+|.++
T Consensus 82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~-------------~~~~D~VVgADG~~S 141 (765)
T PRK08255 82 RRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL-------------AADADLVIASDGLNS 141 (765)
T ss_pred EEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh-------------hcCCCEEEEcCCCCH
Confidence 000000011 2568999999999999999999999888665321 247899999999766
No 237
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.49 E-value=1.8e-06 Score=83.77 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=77.9
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++++|||+|+.|+.+|..+++.|.+|+++++.+.+.. . ...++...
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 212 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR-------------------------------G--FDDDMRAL 212 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc-------------------------------c--cCHHHHHH
Confidence 46799999999999999999999999999998764210 0 12455666
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p 153 (412)
+.+.+++.+++++.+++|++++..+ +.+.+.+.+ .++.+|.||+|+| .+|+..
T Consensus 213 l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~g~~i~~D~viva~G--~~pn~~ 266 (446)
T TIGR01424 213 LARNMEGRGIRIHPQTSLTSITKTD--DGLKVTLSHGEEIVADVVLFATG--RSPNTK 266 (446)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcC--CeEEEEEcCCcEeecCEEEEeeC--CCcCCC
Confidence 7777788899999999999998655 345565544 6799999999999 666654
No 238
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.48 E-value=1.9e-06 Score=80.47 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHHc-CCcccccceEEEEEEcCCCCcEEEEEcc------eEEEeCEEEEeeCCCCCCC
Q 037065 89 TKRQFIAYIESYASHF-KIQPKFKQAVQTALFDHASGFWRVQTQD------SEYISKWLVVATGENAEPV 151 (412)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~------~~~~~d~vIlAtG~~~~p~ 151 (412)
....+.+.+-+.+.+. +++++++++|++|...++ +.|.|.+.+ .++++++|++..|..+-+.
T Consensus 179 nFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~L 247 (488)
T PF06039_consen 179 NFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPL 247 (488)
T ss_pred cHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCC-CCEEEEEEecCCCCeEEEECCEEEECCchHhHHH
Confidence 3444455444445444 899999999999999875 679998743 7899999999999755443
No 239
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.48 E-value=1.4e-06 Score=87.72 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccceEEEEEEcC-CCCcEEEEE----cc--eEEEeCEEEEeeCCCCC
Q 037065 88 PTKRQFIAYIESYASHFKIQPKFKQAVQTALFDH-ASGFWRVQT----QD--SEYISKWLVVATGENAE 149 (412)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~~v~~----~~--~~~~~d~vIlAtG~~~~ 149 (412)
.....+...+...+++.+++++.+++|+++..++ +...+.++. .+ .++.+|+||+|+|.|+.
T Consensus 229 vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 229 MNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred EcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence 3455667777778888899999999999988753 222333333 22 26899999999998753
No 240
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.48 E-value=2e-06 Score=84.16 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=77.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~d~~~~~~ 229 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA---------------------------------AADEQVAKE 229 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC---------------------------------cCCHHHHHH
Confidence 36899999999999999999999999999999764310 012455666
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-----eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-----SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-----~~~~~d~vIlAtG~~~~p~~p 153 (412)
+.+..++.+++++.+++|+.++..+ +...+...+ ..+.+|.|++|+| .+|..+
T Consensus 230 ~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~~~g~~~~i~~D~vl~a~G--~~p~~~ 287 (475)
T PRK06327 230 AAKAFTKQGLDIHLGVKIGEIKTGG--KGVSVAYTDADGEAQTLEVDKLIVSIG--RVPNTD 287 (475)
T ss_pred HHHHHHHcCcEEEeCcEEEEEEEcC--CEEEEEEEeCCCceeEEEcCEEEEccC--CccCCC
Confidence 6667777899999999999998765 344454332 4799999999999 777765
No 241
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.48 E-value=2.5e-06 Score=85.38 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHHcCCcccccceEEEEEEcCC---CCcEEEEE---cc---eEEEeCEEEEeeCCCCC
Q 037065 89 TKRQFIAYIESYASHFKIQPKFKQAVQTALFDHA---SGFWRVQT---QD---SEYISKWLVVATGENAE 149 (412)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~~~v~~---~~---~~~~~d~vIlAtG~~~~ 149 (412)
+...+.+.+.+.+++.+++++.++.|+++..+++ ....-+.. .+ ..+.++.||+|||....
T Consensus 138 tG~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 138 TGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred CHHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence 3567888888888888999999999999876431 11111221 22 36899999999997553
No 242
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.48 E-value=2.3e-06 Score=85.98 Aligned_cols=131 Identities=15% Similarity=0.121 Sum_probs=77.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHc--CCCeEEEecCCCCCc-ccCCCC--CCC-ee-eecCCccc----------------
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQ--GLPSLILERSDCLAS-LWKHRT--YDR-LK-LHLPKQFC---------------- 73 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~g~-~~~~~~--~~~-~~-~~~~~~~~---------------- 73 (412)
.+||+|||+|.|||+||+.+++. |.+|+||||....++ .+.... ... +. .+.+..++
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 57999999999999999999998 999999999864322 211110 000 00 00000000
Q ss_pred --------------cCCCCCCCCCC----------CCCCCHHHHHHHHHHHHHHcC-CcccccceEEEEEEcCCCCcE-E
Q 037065 74 --------------ELPLFGFPENF----------PKYPTKRQFIAYIESYASHFK-IQPKFKQAVQTALFDHASGFW-R 127 (412)
Q Consensus 74 --------------~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~-~ 127 (412)
...+.+|.... ........+.+.+.+.+++.+ ++++.++.|+.+..++ +.+ -
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~G 168 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDD--NRIAG 168 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC--CEEEE
Confidence 00011111000 001234566777767776665 9999999999987544 221 1
Q ss_pred E---EEcc---eEEEeCEEEEeeCCCCC
Q 037065 128 V---QTQD---SEYISKWLVVATGENAE 149 (412)
Q Consensus 128 v---~~~~---~~~~~d~vIlAtG~~~~ 149 (412)
+ ...+ ..+.++.||+|||.++.
T Consensus 169 v~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 169 AVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEEEccCCcEEEEECCEEEECCCchhh
Confidence 2 2222 37899999999997554
No 243
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.46 E-value=3.9e-06 Score=81.63 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=36.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHc----CCCeEEEecCCCCCccc
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQ----GLPSLILERSDCLASLW 56 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~----g~~v~vie~~~~~g~~~ 56 (412)
..+++|||||++||++|..|.+. |.+|+|+|+.+.+||..
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 57899999999999999999995 67999999999888843
No 244
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.46 E-value=2.2e-06 Score=83.83 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=77.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+++|||+|+.|+.+|..|++.|.+|+|+++.+.+.. . ...++...
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------~--~d~~~~~~ 218 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP-------------------------------N--EDAEVSKE 218 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC-------------------------------c--cCHHHHHH
Confidence 36899999999999999999999999999998764210 0 12445667
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEc--c---eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQ--D---SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~--~---~~~~~d~vIlAtG~~~~p~~p 153 (412)
+++..++.+++++.+++|++++..+ ..+.+.+. + .++.+|.||+|+| .+|+..
T Consensus 219 l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~~~g~~~~i~~D~vi~a~G--~~pn~~ 276 (466)
T PRK07818 219 IAKQYKKLGVKILTGTKVESIDDNG--SKVTVTVSKKDGKAQELEADKVLQAIG--FAPRVE 276 (466)
T ss_pred HHHHHHHCCCEEEECCEEEEEEEeC--CeEEEEEEecCCCeEEEEeCEEEECcC--cccCCC
Confidence 7777788899999999999998654 34444433 2 4799999999999 777664
No 245
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.46 E-value=2.4e-06 Score=84.92 Aligned_cols=132 Identities=14% Similarity=0.158 Sum_probs=78.4
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCC-CCc--ccCCCCCCCee--eecCCcc------------------
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDC-LAS--LWKHRTYDRLK--LHLPKQF------------------ 72 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~-~g~--~~~~~~~~~~~--~~~~~~~------------------ 72 (412)
..+||+|||+|.|||+||+.+ +.|.+|+|+||... .+| .+....+.... -+.+..+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~ 84 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVE 84 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHH
Confidence 357999999999999999999 89999999999753 333 11111000000 0000000
Q ss_pred ------------ccCCCCCCCCC---------CC--CC--------CCHHHHHHHHHHHHHHcCCcccccceEEEEEEcC
Q 037065 73 ------------CELPLFGFPEN---------FP--KY--------PTKRQFIAYIESYASHFKIQPKFKQAVQTALFDH 121 (412)
Q Consensus 73 ------------~~~~~~~~~~~---------~~--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 121 (412)
..-.+.+|... .. .+ .+...+...+.+.+.+.++++++++.++++..++
T Consensus 85 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~ 164 (543)
T PRK06263 85 ILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDE 164 (543)
T ss_pred HHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC
Confidence 00001112100 00 01 1356777888877777899999999999987654
Q ss_pred CCCcEEEE--E-cc---eEEEeCEEEEeeCCCC
Q 037065 122 ASGFWRVQ--T-QD---SEYISKWLVVATGENA 148 (412)
Q Consensus 122 ~~~~~~v~--~-~~---~~~~~d~vIlAtG~~~ 148 (412)
.....-+. . .+ ..+.++.||+|||...
T Consensus 165 ~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 165 NREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred CcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 21011122 1 22 4689999999999654
No 246
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.46 E-value=2.6e-06 Score=83.19 Aligned_cols=99 Identities=13% Similarity=0.137 Sum_probs=78.5
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAYI 97 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
.+++|||+|..|+.+|..|++.|.+|+++++.+.+.. ....++.+.+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~d~~~~~~l 224 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP---------------------------------GEDADAAEVL 224 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC---------------------------------CCCHHHHHHH
Confidence 5899999999999999999999999999998764321 0123456777
Q ss_pred HHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCC
Q 037065 98 ESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 98 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p 153 (412)
++..++.+++++.+++|+.++..+ +.+.+...+ .++.+|.|++|+| .+|+..
T Consensus 225 ~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~g~~l~~D~vl~a~G--~~pn~~ 277 (466)
T PRK07845 225 EEVFARRGMTVLKRSRAESVERTG--DGVVVTLTDGRTVEGSHALMAVG--SVPNTA 277 (466)
T ss_pred HHHHHHCCcEEEcCCEEEEEEEeC--CEEEEEECCCcEEEecEEEEeec--CCcCCC
Confidence 777888899999999999997655 445565544 6799999999999 666654
No 247
>PRK07846 mycothione reductase; Reviewed
Probab=98.46 E-value=2.2e-06 Score=83.18 Aligned_cols=100 Identities=20% Similarity=0.159 Sum_probs=75.2
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++++|||||+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~---------------------------------~~d~~~~~~ 212 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR---------------------------------HLDDDISER 212 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc---------------------------------ccCHHHHHH
Confidence 47899999999999999999999999999999764310 011334455
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPD 154 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~ 154 (412)
+++.. +.+++++++++|++++..+ +...+.+.+ .++.+|.||+|+| .+|+.+.
T Consensus 213 l~~l~-~~~v~i~~~~~v~~i~~~~--~~v~v~~~~g~~i~~D~vl~a~G--~~pn~~~ 266 (451)
T PRK07846 213 FTELA-SKRWDVRLGRNVVGVSQDG--SGVTLRLDDGSTVEADVLLVATG--RVPNGDL 266 (451)
T ss_pred HHHHH-hcCeEEEeCCEEEEEEEcC--CEEEEEECCCcEeecCEEEEEEC--CccCccc
Confidence 55544 3478899999999998655 345565544 6799999999999 7776653
No 248
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.45 E-value=2e-06 Score=82.91 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=32.9
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
.+||+|||+|.|||+||+.+. .|.+|+|+||.+..++
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 579999999999999999985 7999999999876554
No 249
>PLN02507 glutathione reductase
Probab=98.44 E-value=2.8e-06 Score=83.44 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=78.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+. + ....++.+.
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~--~~d~~~~~~ 249 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------R--GFDDEMRAV 249 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------c--ccCHHHHHH
Confidence 4689999999999999999999999999999876321 0 012456677
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p 153 (412)
+.+..++.+++++.+++|+++...+ +.+.+...+ .++.+|.|++|+| .+|+..
T Consensus 250 l~~~l~~~GI~i~~~~~V~~i~~~~--~~~~v~~~~g~~i~~D~vl~a~G--~~pn~~ 303 (499)
T PLN02507 250 VARNLEGRGINLHPRTNLTQLTKTE--GGIKVITDHGEEFVADVVLFATG--RAPNTK 303 (499)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeC--CeEEEEECCCcEEEcCEEEEeec--CCCCCC
Confidence 7777788899999999999998654 345566555 6799999999999 666654
No 250
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.44 E-value=3.4e-06 Score=81.87 Aligned_cols=101 Identities=17% Similarity=0.084 Sum_probs=78.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~---------------------------------~~d~~~~~~ 212 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR---------------------------------SFDSMISET 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc---------------------------------ccCHHHHHH
Confidence 36899999999999999999999999999999764321 012345667
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc--eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD--SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~--~~~~~d~vIlAtG~~~~p~~p 153 (412)
+++..++.+++++.++.|+++..+.. +...+..++ ..+.+|.||+|+| .+|+..
T Consensus 213 ~~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~v~~~~g~~~i~~D~vi~a~G--~~pn~~ 268 (450)
T TIGR01421 213 ITEEYEKEGINVHKLSKPVKVEKTVE-GKLVIHFEDGKSIDDVDELIWAIG--RKPNTK 268 (450)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEEeCC-ceEEEEECCCcEEEEcCEEEEeeC--CCcCcc
Confidence 77777788999999999999986542 234555544 4699999999999 677665
No 251
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.42 E-value=5.4e-06 Score=82.87 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=36.1
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
..+||+|||+|.+||++|+.+++.|.+|+|+|+...+||
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 468999999999999999999999999999999987665
No 252
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.42 E-value=3.8e-06 Score=83.99 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=33.4
Q ss_pred ccCeEEECCChHHHHHHHHHHHc--CCCeEEEecCCCCCc
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQ--GLPSLILERSDCLAS 54 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~g~ 54 (412)
.+||+|||+|.|||+||+.+++. |.+|+|+||....++
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 57999999999999999999987 479999999865544
No 253
>PRK12839 hypothetical protein; Provisional
Probab=98.42 E-value=8.1e-06 Score=81.35 Aligned_cols=39 Identities=21% Similarity=0.420 Sum_probs=35.8
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
..+||+|||+|.+|+++|+.|++.|.+|+|+|+...+||
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 45 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG 45 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 368999999999999999999999999999999876665
No 254
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.42 E-value=8.5e-06 Score=81.62 Aligned_cols=40 Identities=20% Similarity=0.480 Sum_probs=36.2
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
...+||+|||+|.+|+++|..++++|.+|+|||+.+.+||
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 49 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 4478999999999999999999999999999999876655
No 255
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.42 E-value=3.8e-06 Score=82.00 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=76.4
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||+|+.|+.+|..+++.|.+|+++|+.+.+.. . ...++.+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~-------------------------------~--~d~~~~~~ 220 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP-------------------------------G--TDTETAKT 220 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC-------------------------------C--CCHHHHHH
Confidence 47899999999999999999999999999998764310 0 11345566
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEc------ceEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQ------DSEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~------~~~~~~d~vIlAtG~~~~p~~p 153 (412)
+++..++.+++++.++.|+++...+ +.+.+... ...+.+|.|++|+| .+|+..
T Consensus 221 l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~~~~g~~~~i~~D~vi~a~G--~~pn~~ 279 (466)
T PRK06115 221 LQKALTKQGMKFKLGSKVTGATAGA--DGVSLTLEPAAGGAAETLQADYVLVAIG--RRPYTQ 279 (466)
T ss_pred HHHHHHhcCCEEEECcEEEEEEEcC--CeEEEEEEEcCCCceeEEEeCEEEEccC--Cccccc
Confidence 7777778899999999999998654 33434332 15799999999999 666654
No 256
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.42 E-value=2.9e-06 Score=83.52 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=33.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
.+||+|||+|.|||++|+.+++ |.+|+|+||.+..++
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 5799999999999999999976 899999999876544
No 257
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.41 E-value=3.1e-07 Score=89.80 Aligned_cols=51 Identities=27% Similarity=0.485 Sum_probs=43.9
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeee
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLH 67 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~ 67 (412)
++||+|||||+.||++|..|+++|++|+|+||+..+||......+.+++.+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd 53 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFD 53 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEec
Confidence 689999999999999999999999999999999999996665545455444
No 258
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.41 E-value=4.7e-06 Score=83.16 Aligned_cols=131 Identities=16% Similarity=0.141 Sum_probs=77.7
Q ss_pred ccCeEEECCChHHHHHHHHHHHc--CCCeEEEecCCCCCcc--cCCCCCCCee--eecC---------------------
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQ--GLPSLILERSDCLASL--WKHRTYDRLK--LHLP--------------------- 69 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~g~~--~~~~~~~~~~--~~~~--------------------- 69 (412)
.+||+|||+|.|||+||+.+++. |.+|+|+||....++. |......... -+.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 57999999999999999999987 5799999998765542 1111000000 0000
Q ss_pred -------Ccc--ccCCCCCCCC---------CCC----------CCCCHHHHHHHHHHHHHHc-CCcccccceEEEEEEc
Q 037065 70 -------KQF--CELPLFGFPE---------NFP----------KYPTKRQFIAYIESYASHF-KIQPKFKQAVQTALFD 120 (412)
Q Consensus 70 -------~~~--~~~~~~~~~~---------~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~ 120 (412)
..+ ..-.+.+|.. ... .-.....+.+.+.+.+.+. +++++.++.++++..+
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~ 162 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD 162 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence 000 0000111210 000 0124567778777766554 7888889999988765
Q ss_pred CCCCcEE----EEEcc---eEEEeCEEEEeeCCCCC
Q 037065 121 HASGFWR----VQTQD---SEYISKWLVVATGENAE 149 (412)
Q Consensus 121 ~~~~~~~----v~~~~---~~~~~d~vIlAtG~~~~ 149 (412)
+ +... +...+ ..+.++.||+|||..+.
T Consensus 163 ~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 163 D--GRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred C--CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 4 3321 12222 57899999999997554
No 259
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.40 E-value=2e-06 Score=80.39 Aligned_cols=99 Identities=22% Similarity=0.341 Sum_probs=79.1
Q ss_pred cCeEEECCChHHHHHHHHHHHc-------------CCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCC
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQ-------------GLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENF 84 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~-------------g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (412)
-.++|||||+.|+.+|..|++. ..+|+|+|+.+.+..
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp------------------------------ 205 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP------------------------------ 205 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc------------------------------
Confidence 4699999999999999999863 138999999875421
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-e-EEEeCEEEEeeCCCCCCCCCCC
Q 037065 85 PKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-S-EYISKWLVVATGENAEPVFPDV 155 (412)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~-~~~~d~vIlAtG~~~~p~~p~~ 155 (412)
.-..++.++.++..++.+++++.++.|++++.+. |++++ + .+.++.+|.|+|....|..-.+
T Consensus 206 ---~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~------v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 206 ---MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------VTLKDGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred ---CCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc------EEEccCCeeEecCEEEEcCCCcCChhhhhc
Confidence 1235778899999999999999999999998766 77766 3 5999999999996555555553
No 260
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.40 E-value=1.7e-06 Score=78.04 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=106.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++++|||+|.-||..+.--.+.|.+||++|-.+.+++. -..++...
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~---------------------------------mD~Eisk~ 257 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV---------------------------------MDGEISKA 257 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc---------------------------------cCHHHHHH
Confidence 478999999999999999999999999999998877642 12577888
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc------eEEEeCEEEEeeCCCCCCCCCCCC----CCCC-Cccce
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD------SEYISKWLVVATGENAEPVFPDVV----GLDK-FNGHV 165 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~------~~~~~d~vIlAtG~~~~p~~p~~~----g~~~-~~~~~ 165 (412)
+++..++.++++.++++|+.+....+. .+.|...+ +++.+|.+.+|+| .+|....+. |++. ..+++
T Consensus 258 ~qr~L~kQgikF~l~tkv~~a~~~~dg-~v~i~ve~ak~~k~~tle~DvlLVsiG--RrP~t~GLgle~iGi~~D~r~rv 334 (506)
T KOG1335|consen 258 FQRVLQKQGIKFKLGTKVTSATRNGDG-PVEIEVENAKTGKKETLECDVLLVSIG--RRPFTEGLGLEKIGIELDKRGRV 334 (506)
T ss_pred HHHHHHhcCceeEeccEEEEeeccCCC-ceEEEEEecCCCceeEEEeeEEEEEcc--CcccccCCChhhcccccccccce
Confidence 899999999999999999999998862 66666554 7899999999999 788776431 1111 11111
Q ss_pred eeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhcCC
Q 037065 166 LHTSKYKSGSEFKNQKVLVIGCGNSGMEVSLDLCRHNA 203 (412)
Q Consensus 166 ~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~ 203 (412)
..-.. ....-.++-.||-=..|.-+|...-+.|.
T Consensus 335 ~v~~~----f~t~vP~i~~IGDv~~gpMLAhkAeeegI 368 (506)
T KOG1335|consen 335 IVNTR----FQTKVPHIYAIGDVTLGPMLAHKAEEEGI 368 (506)
T ss_pred ecccc----ccccCCceEEecccCCcchhhhhhhhhch
Confidence 11111 11223356777777677666666666654
No 261
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.39 E-value=2e-06 Score=83.27 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=74.5
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAYI 97 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
.+++|||||+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~---------------------------------~~d~~~~~~l 195 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK---------------------------------LMDADMNQPI 195 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch---------------------------------hcCHHHHHHH
Confidence 6899999999999999999999999999999764321 0113556677
Q ss_pred HHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCC
Q 037065 98 ESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 98 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p 153 (412)
.+..++.+++++.+++|++++. . .+++.+ +++.+|.|++|+| .+|+.+
T Consensus 196 ~~~l~~~gI~i~~~~~v~~i~~----~--~v~~~~g~~~~~D~vl~a~G--~~pn~~ 244 (438)
T PRK13512 196 LDELDKREIPYRLNEEIDAING----N--EVTFKSGKVEHYDMIIEGVG--THPNSK 244 (438)
T ss_pred HHHHHhcCCEEEECCeEEEEeC----C--EEEECCCCEEEeCEEEECcC--CCcChH
Confidence 7777888999999999998863 1 255444 6789999999999 666654
No 262
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.38 E-value=4.8e-06 Score=80.94 Aligned_cols=99 Identities=22% Similarity=0.175 Sum_probs=74.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+.. ....++...
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~---------------------------------~~d~~~~~~ 215 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR---------------------------------HLDEDISDR 215 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc---------------------------------ccCHHHHHH
Confidence 47899999999999999999999999999999764310 011334455
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p 153 (412)
+++..+ .+++++.+.+|++++.++ +.+.++..+ .++.+|.|++|+| .+|+..
T Consensus 216 l~~~~~-~gI~i~~~~~V~~i~~~~--~~v~v~~~~g~~i~~D~vl~a~G--~~pn~~ 268 (452)
T TIGR03452 216 FTEIAK-KKWDIRLGRNVTAVEQDG--DGVTLTLDDGSTVTADVLLVATG--RVPNGD 268 (452)
T ss_pred HHHHHh-cCCEEEeCCEEEEEEEcC--CeEEEEEcCCCEEEcCEEEEeec--cCcCCC
Confidence 555443 478899999999998655 345565544 6799999999999 777654
No 263
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.38 E-value=5.6e-06 Score=81.01 Aligned_cols=99 Identities=16% Similarity=0.083 Sum_probs=75.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+++|||||+.|+.+|..|++.|.+|+++++...+. ....++.++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~----------------------------------~~d~~~~~~ 225 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR----------------------------------GFDQDCANK 225 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc----------------------------------ccCHHHHHH
Confidence 3589999999999999999999999999998732110 112456677
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc----eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD----SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~----~~~~~d~vIlAtG~~~~p~~p 153 (412)
+++..++.+++++.++.++.+...+ +...++..+ .++.+|.|++|+| .+|+..
T Consensus 226 l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~~~~~~~i~~D~vl~a~G--~~pn~~ 282 (484)
T TIGR01438 226 VGEHMEEHGVKFKRQFVPIKVEQIE--AKVKVTFTDSTNGIEEEYDTVLLAIG--RDACTR 282 (484)
T ss_pred HHHHHHHcCCEEEeCceEEEEEEcC--CeEEEEEecCCcceEEEeCEEEEEec--CCcCCC
Confidence 7777888899999999888887654 334454433 3799999999999 666654
No 264
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.38 E-value=3.3e-06 Score=84.09 Aligned_cols=42 Identities=19% Similarity=0.465 Sum_probs=37.3
Q ss_pred ccccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 13 KSVLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 13 ~~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
|+...+||+|||+|++|+++|+.+++.|.+|+|||+...+||
T Consensus 3 ~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 444578999999999999999999999999999999876654
No 265
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.37 E-value=3.6e-06 Score=81.43 Aligned_cols=100 Identities=19% Similarity=0.323 Sum_probs=75.7
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. + ....++.+.
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~--~~~~~~~~~ 184 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------K--LFDEEMNQI 184 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------c--ccCHHHHHH
Confidence 36899999999999999999999999999998764310 0 011455667
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p 153 (412)
+.+.+++.+++++.++.|.+++.++ . ..+..+++++.+|.||+|+| .+|..+
T Consensus 185 ~~~~l~~~gV~v~~~~~v~~i~~~~--~-~v~~~~g~~i~~D~vi~a~G--~~p~~~ 236 (427)
T TIGR03385 185 VEEELKKHEINLRLNEEVDSIEGEE--R-VKVFTSGGVYQADMVILATG--IKPNSE 236 (427)
T ss_pred HHHHHHHcCCEEEeCCEEEEEecCC--C-EEEEcCCCEEEeCEEEECCC--ccCCHH
Confidence 7777888899999999999997644 2 22223347899999999999 666543
No 266
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.37 E-value=6.4e-06 Score=88.70 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=36.8
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
+..+||+|||+|.||++||+.+++.|.+|+|+||.+..||
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 4479999999999999999999999999999999987766
No 267
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.36 E-value=6e-06 Score=81.15 Aligned_cols=98 Identities=20% Similarity=0.114 Sum_probs=75.7
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAYI 97 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
.+++|||+|+.|+.+|..|++.|.+|+++++...+. ....++.+.+
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~----------------------------------~~d~~~~~~l 228 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR----------------------------------GFDRQCSEKV 228 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc----------------------------------cCCHHHHHHH
Confidence 589999999999999999999999999998742110 0123456777
Q ss_pred HHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCC
Q 037065 98 ESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 98 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p 153 (412)
++..++.+++++.++.+..+...+ +...+...+ .++.+|.|++|+| .+|+..
T Consensus 229 ~~~l~~~GV~i~~~~~v~~v~~~~--~~~~v~~~~g~~i~~D~vl~a~G--~~pn~~ 281 (499)
T PTZ00052 229 VEYMKEQGTLFLEGVVPINIEKMD--DKIKVLFSDGTTELFDTVLYATG--RKPDIK 281 (499)
T ss_pred HHHHHHcCCEEEcCCeEEEEEEcC--CeEEEEECCCCEEEcCEEEEeeC--CCCCcc
Confidence 777788899999999888887654 334455544 6789999999999 677655
No 268
>PLN02815 L-aspartate oxidase
Probab=98.36 E-value=4.9e-06 Score=82.98 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=33.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
.+||+|||+|.|||++|+.+++.| +|+|+||....++
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 589999999999999999999999 9999999876554
No 269
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.36 E-value=5.7e-06 Score=83.68 Aligned_cols=39 Identities=26% Similarity=0.531 Sum_probs=34.6
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA 53 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g 53 (412)
...+||+|||+|.+||++|+.+++.|.+|+|+|+.+..+
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 346899999999999999999999999999999876543
No 270
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.36 E-value=1.6e-06 Score=79.35 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=33.7
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA 53 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g 53 (412)
+.+|+|||||++|+++|+.|+++|++|+|+|++..+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 4689999999999999999999999999999986554
No 271
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.35 E-value=6.3e-06 Score=80.54 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=74.8
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAYI 97 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
.+++|||||+.|+.+|..|++.|.+|+|+++.+.+.. ....++.+.+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~---------------------------------~~d~~~~~~~ 221 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP---------------------------------AADKDIVKVF 221 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC---------------------------------cCCHHHHHHH
Confidence 6899999999999999999999999999999774321 0124455666
Q ss_pred HHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-----eEEEeCEEEEeeCCCCCCCCC
Q 037065 98 ESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-----SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 98 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-----~~~~~d~vIlAtG~~~~p~~p 153 (412)
++..++. ++++.++.|+.+...+ +.+.+...+ .++.+|.||+|+| .+|+..
T Consensus 222 ~~~l~~~-v~i~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~i~~D~vi~a~G--~~pn~~ 277 (471)
T PRK06467 222 TKRIKKQ-FNIMLETKVTAVEAKE--DGIYVTMEGKKAPAEPQRYDAVLVAVG--RVPNGK 277 (471)
T ss_pred HHHHhhc-eEEEcCCEEEEEEEcC--CEEEEEEEeCCCcceEEEeCEEEEeec--ccccCC
Confidence 6666666 8889999999998655 344454332 3699999999999 777765
No 272
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.34 E-value=7e-06 Score=80.23 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=77.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~d~~~~~~ 215 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP---------------------------------LEDPEVSKQ 215 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc---------------------------------chhHHHHHH
Confidence 47899999999999999999999999999999764321 012456677
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEE--cc-eEEEeCEEEEeeCCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQT--QD-SEYISKWLVVATGENAEPVFPD 154 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~--~~-~~~~~d~vIlAtG~~~~p~~p~ 154 (412)
+++..++. ++++++++|.+++..+. ..++++. .+ .++.+|.||+|+| .+|+...
T Consensus 216 ~~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~~~~~~~~~~~i~~D~vi~a~G--~~p~~~~ 272 (460)
T PRK06292 216 AQKILSKE-FKIKLGAKVTSVEKSGD-EKVEELEKGGKTETIEADYVLVATG--RRPNTDG 272 (460)
T ss_pred HHHHHhhc-cEEEcCCEEEEEEEcCC-ceEEEEEcCCceEEEEeCEEEEccC--CccCCCC
Confidence 77777777 99999999999986543 2343432 12 5799999999999 7777663
No 273
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.34 E-value=9.5e-06 Score=81.42 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=30.3
Q ss_pred eEEECCChHHHHHHHHHHHcCCCeEEEecCCC
Q 037065 20 PIIVGAGPSGLAVSACLSQQGLPSLILERSDC 51 (412)
Q Consensus 20 vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~ 51 (412)
|+|||+|.|||+||+.+++.|.+|+|+||...
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~ 32 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDA 32 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 79999999999999999999999999999873
No 274
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.33 E-value=5.1e-06 Score=86.10 Aligned_cols=102 Identities=16% Similarity=0.183 Sum_probs=78.2
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++++|||||+.|+.+|..|++.|.+|+|+++.+.+... .-.......
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~--------------------------------~ld~~~~~~ 192 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE--------------------------------QLDQMGGEQ 192 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh--------------------------------hcCHHHHHH
Confidence 357999999999999999999999999999987642100 012445667
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVF 152 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~ 152 (412)
+++..++.+++++++..++++..++......+...+ .++.+|.||+|+| .+|+.
T Consensus 193 l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G--~rPn~ 247 (847)
T PRK14989 193 LRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTG--IRPQD 247 (847)
T ss_pred HHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCC--cccCc
Confidence 777888889999999999999764322333455555 7899999999999 66664
No 275
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.33 E-value=3.5e-06 Score=83.56 Aligned_cols=38 Identities=24% Similarity=0.425 Sum_probs=33.5
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
..+||+|||+|.||++||+.+. .|.+|+|+||.+..++
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 4689999999999999999996 4999999999876554
No 276
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.32 E-value=1.6e-06 Score=81.82 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=32.7
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA 53 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g 53 (412)
.+|+|||||.+|+.+|..|++.|++|+|+|+++..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 379999999999999999999999999999876543
No 277
>PTZ00058 glutathione reductase; Provisional
Probab=98.32 E-value=8.1e-06 Score=80.82 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=77.7
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~---------------------------------~~d~~i~~~ 283 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR---------------------------------KFDETIINE 283 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc---------------------------------cCCHHHHHH
Confidence 46899999999999999999999999999999764210 012455667
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc--eEEEeCEEEEeeCCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD--SEYISKWLVVATGENAEPVFPD 154 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~--~~~~~d~vIlAtG~~~~p~~p~ 154 (412)
+++..++.+++++.+..|.+++..+. +.+.+...+ .++.+|.|++|+| .+|+...
T Consensus 284 l~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~v~~~~~~~~i~aD~VlvA~G--r~Pn~~~ 340 (561)
T PTZ00058 284 LENDMKKNNINIITHANVEEIEKVKE-KNLTIYLSDGRKYEHFDYVIYCVG--RSPNTED 340 (561)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEecCC-CcEEEEECCCCEEEECCEEEECcC--CCCCccc
Confidence 77777788999999999999986542 234444323 5799999999999 6676553
No 278
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.31 E-value=1.9e-06 Score=80.93 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=32.9
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCL 52 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~ 52 (412)
+.||+|||||++|+.+|+.|++.|++|+|+|+++..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 468999999999999999999999999999986644
No 279
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.30 E-value=9.7e-06 Score=79.20 Aligned_cols=101 Identities=11% Similarity=0.067 Sum_probs=76.4
Q ss_pred ccCeEEECCChHHHHHHHHHHHc---CCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQ---GLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQF 93 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
..+++|||||+.|+.+|..+... |.+|+|+++.+.+.. ....++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~---------------------------------~~d~~~ 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR---------------------------------GFDSTL 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc---------------------------------ccCHHH
Confidence 36899999999999999776554 899999998764320 012466
Q ss_pred HHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCC
Q 037065 94 IAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p 153 (412)
.+.+.+..++.+++++.++.|+++...++ +...+.+.+ .++.+|.||+|+| .+|+..
T Consensus 234 ~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~~~~v~~~~g~~i~~D~vl~a~G--~~Pn~~ 291 (486)
T TIGR01423 234 RKELTKQLRANGINIMTNENPAKVTLNAD-GSKHVTFESGKTLDVDVVMMAIG--RVPRTQ 291 (486)
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEEcCC-ceEEEEEcCCCEEEcCEEEEeeC--CCcCcc
Confidence 67777778888999999999999986542 234455443 6799999999999 666654
No 280
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.29 E-value=2.2e-05 Score=78.03 Aligned_cols=39 Identities=28% Similarity=0.503 Sum_probs=35.8
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
...+||+|||+| +|+++|+.+++.|.+|+|+||.+.+||
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG 52 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcC
Confidence 347899999999 899999999999999999999987776
No 281
>PRK07208 hypothetical protein; Provisional
Probab=98.29 E-value=1.2e-06 Score=86.06 Aligned_cols=44 Identities=27% Similarity=0.497 Sum_probs=40.1
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHR 59 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~ 59 (412)
.++||+|||||++||++|..|+++|++|+|+|+.+.+||.+...
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~ 46 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTV 46 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeee
Confidence 46799999999999999999999999999999999999976553
No 282
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.29 E-value=8.8e-07 Score=85.87 Aligned_cols=41 Identities=29% Similarity=0.446 Sum_probs=38.3
Q ss_pred cccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 14 SVLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 14 ~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
..+.++|+|||||+|||+||.+|...|++|+|+|.++.+||
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 34578999999999999999999999999999999999998
No 283
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.28 E-value=8.8e-06 Score=78.28 Aligned_cols=101 Identities=16% Similarity=0.240 Sum_probs=80.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++++|||+|+.|+.+|..|++.|++|+++|+.+.+++.. .. ..+.+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~-------------------------------~~-~~~~~~ 183 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL-------------------------------LD-PEVAEE 183 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh-------------------------------hh-HHHHHH
Confidence 4799999999999999999999999999999988765310 00 567788
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcE--EEEEcceEEEeCEEEEeeCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFW--RVQTQDSEYISKWLVVATGENAEPV 151 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~--~v~~~~~~~~~d~vIlAtG~~~~p~ 151 (412)
+++..+..+++++.+..+..++...+.... .+......+.+|.+++++| .+|.
T Consensus 184 ~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g--~~p~ 238 (415)
T COG0446 184 LAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPG--ERPN 238 (415)
T ss_pred HHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeec--cccc
Confidence 888888899999999999999976632111 1333337899999999999 6664
No 284
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.27 E-value=6.2e-06 Score=85.36 Aligned_cols=101 Identities=14% Similarity=0.164 Sum_probs=76.7
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++++|||||..|+.+|..|++.|.+|+|+++.+.+-.. .-.......
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~--------------------------------~ld~~~~~~ 187 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK--------------------------------QLDQTAGRL 187 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh--------------------------------hcCHHHHHH
Confidence 468999999999999999999999999999987632100 011344566
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p 153 (412)
+++..++.++++++++.++++..+. ....+.+.+ .++.+|.||+|+| .+|+..
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~~~--~~~~v~~~dG~~i~~D~Vi~a~G--~~Pn~~ 241 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVGAT--KADRIRFKDGSSLEADLIVMAAG--IRPNDE 241 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEcCC--ceEEEEECCCCEEEcCEEEECCC--CCcCcH
Confidence 6777788899999999998887543 333455555 7899999999999 666653
No 285
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.27 E-value=1.2e-05 Score=80.95 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=76.2
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++.++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~---------------------------------~~d~eis~~ 358 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP---------------------------------LLDADVAKY 358 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc---------------------------------cCCHHHHHH
Confidence 36899999999999999999999999999999775321 012345666
Q ss_pred HHHHH-HHcCCcccccceEEEEEEcCCCCcEEEEEcc----------------eEEEeCEEEEeeCCCCCCCCCC
Q 037065 97 IESYA-SHFKIQPKFKQAVQTALFDHASGFWRVQTQD----------------SEYISKWLVVATGENAEPVFPD 154 (412)
Q Consensus 97 ~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~----------------~~~~~d~vIlAtG~~~~p~~p~ 154 (412)
+.+.. ++.+++++.++.|.++...++...+.+...+ .++.+|.|++|+| .+|+...
T Consensus 359 l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG--r~Pnt~~ 431 (659)
T PTZ00153 359 FERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG--RKPNTNN 431 (659)
T ss_pred HHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEEC--cccCCcc
Confidence 66643 5679999999999999865432224443321 2799999999999 7777654
No 286
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.27 E-value=2.5e-05 Score=78.27 Aligned_cols=39 Identities=26% Similarity=0.532 Sum_probs=35.9
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
..+||+|||+|.+|+++|..++++|.+|+|||+...+|+
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg 53 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGG 53 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 468999999999999999999999999999999876666
No 287
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.23 E-value=6.5e-06 Score=77.49 Aligned_cols=62 Identities=11% Similarity=0.047 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEE-EEEcc---eEEEeCEEEEeeCCC-CCCCC
Q 037065 89 TKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWR-VQTQD---SEYISKWLVVATGEN-AEPVF 152 (412)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~---~~~~~d~vIlAtG~~-~~p~~ 152 (412)
....+.+.+.+.+++.|.+++.+.+|+++..++ +.++ +.+.+ .++.+|.+|+|+|+| +....
T Consensus 261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~ 327 (419)
T TIGR03378 261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLV 327 (419)
T ss_pred cHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecCCccceEECCEEEEccCCCcCHHHH
Confidence 467777888888899999999898999998776 4443 44444 489999999999987 54443
No 288
>PLN02546 glutathione reductase
Probab=98.21 E-value=1.9e-05 Score=78.22 Aligned_cols=101 Identities=15% Similarity=0.120 Sum_probs=76.9
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++..+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~---------------------------------~~d~~~~~~ 298 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR---------------------------------GFDEEVRDF 298 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc---------------------------------ccCHHHHHH
Confidence 46899999999999999999999999999998764321 012455667
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEE-EeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEY-ISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~-~~d~vIlAtG~~~~p~~p 153 (412)
+++..++.+++++.++.+.++....+ +...+...++++ .+|.||+|+| .+|+..
T Consensus 299 l~~~L~~~GV~i~~~~~v~~i~~~~~-g~v~v~~~~g~~~~~D~Viva~G--~~Pnt~ 353 (558)
T PLN02546 299 VAEQMSLRGIEFHTEESPQAIIKSAD-GSLSLKTNKGTVEGFSHVMFATG--RKPNTK 353 (558)
T ss_pred HHHHHHHCCcEEEeCCEEEEEEEcCC-CEEEEEECCeEEEecCEEEEeec--cccCCC
Confidence 77777888999999999999976432 344455555444 4899999999 666654
No 289
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.19 E-value=1.5e-05 Score=78.61 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=76.6
Q ss_pred cccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCC-CCc--ccCCCCCCCe-e-eecCCcc----------------
Q 037065 14 SVLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDC-LAS--LWKHRTYDRL-K-LHLPKQF---------------- 72 (412)
Q Consensus 14 ~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~-~g~--~~~~~~~~~~-~-~~~~~~~---------------- 72 (412)
....+||+|||+|.|||++|+.++ +.+|+|+||... .++ .|....+... . -+.+..+
T Consensus 6 ~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~ 83 (513)
T PRK07512 6 RILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAV 83 (513)
T ss_pred cCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence 345789999999999999999996 569999999875 232 2222111000 0 0000000
Q ss_pred --------------ccCCCCCCCCC----C-----C-----------CCCCHHHHHHHHHHHHHHc-CCcccccceEEEE
Q 037065 73 --------------CELPLFGFPEN----F-----P-----------KYPTKRQFIAYIESYASHF-KIQPKFKQAVQTA 117 (412)
Q Consensus 73 --------------~~~~~~~~~~~----~-----~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i 117 (412)
..-.+.+|... + . .......+.+.+.+.+.+. +++++.++.|+++
T Consensus 84 v~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~L 163 (513)
T PRK07512 84 AALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRL 163 (513)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhhe
Confidence 00001111100 0 0 0123456777777777664 8999989889887
Q ss_pred EEcCCCCcE-EEEE--cc--eEEEeCEEEEeeCCCCC
Q 037065 118 LFDHASGFW-RVQT--QD--SEYISKWLVVATGENAE 149 (412)
Q Consensus 118 ~~~~~~~~~-~v~~--~~--~~~~~d~vIlAtG~~~~ 149 (412)
..++ +.+ -+.. .+ ..+.++.||+|||....
T Consensus 164 i~~~--g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 164 LVDD--GAVAGVLAATAGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred eecC--CEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence 6543 332 2222 22 36899999999996543
No 290
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.19 E-value=2.7e-05 Score=77.28 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=33.7
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
..+||+|||+|.|||++|+.+++. .+|+|+||....++
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 468999999999999999999986 89999999876554
No 291
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.18 E-value=4.4e-05 Score=76.07 Aligned_cols=38 Identities=26% Similarity=0.541 Sum_probs=35.2
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
.+||+|||+|.+|+++|+.|++.|.+|+|||+...+||
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG 43 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG 43 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 68999999999999999999999999999999876655
No 292
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.18 E-value=1.5e-05 Score=70.29 Aligned_cols=36 Identities=22% Similarity=0.479 Sum_probs=33.6
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
-|+|||+|.|||+++..+...+-.|+++|+...+||
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GG 46 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGG 46 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCC
Confidence 599999999999999999999888999999988877
No 293
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.16 E-value=1.9e-05 Score=77.87 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=36.2
Q ss_pred cccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 14 SVLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 14 ~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
...++||+|||||.|||.+|+.+++.|.+|+|+||-...++
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg 43 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence 34578999999999999999999999999999999865443
No 294
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.16 E-value=2.4e-05 Score=78.23 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=30.5
Q ss_pred CeEEECCChHHHHHHHHHH----HcCCCeEEEecCCC
Q 037065 19 GPIIVGAGPSGLAVSACLS----QQGLPSLILERSDC 51 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~----~~g~~v~vie~~~~ 51 (412)
||+|||+|.|||+||+.++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999764
No 295
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.14 E-value=1.7e-05 Score=76.56 Aligned_cols=90 Identities=21% Similarity=0.272 Sum_probs=70.2
Q ss_pred cCeEEECCChHHHHHHHHHHH--------------cCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCC
Q 037065 18 HGPIIVGAGPSGLAVSACLSQ--------------QGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPEN 83 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~--------------~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (412)
.+++|||||+.|+..|..|++ .+.+|+++++.+.+..
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~----------------------------- 224 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG----------------------------- 224 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-----------------------------
Confidence 489999999999999999876 3678999998764321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCC
Q 037065 84 FPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGE 146 (412)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~ 146 (412)
. -...+.+++++..++.+++++.+++|+++..+. +.+++ +++.+|.+|.|+|.
T Consensus 225 --~--~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~~------v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 225 --S--FDQALRKYGQRRLRRLGVDIRTKTAVKEVLDKE------VVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred --c--CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCCE------EEECCCCEEEccEEEEccCC
Confidence 0 113566777888888999999999998886422 55554 78999999999994
No 296
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.14 E-value=2.7e-05 Score=75.34 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcE-EEEEc-c-eEEEeCEEEEeeCCC
Q 037065 90 KRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFW-RVQTQ-D-SEYISKWLVVATGEN 147 (412)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~-~-~~~~~d~vIlAtG~~ 147 (412)
...+.+.+.+.+++.+++++++++|+++..+.+.+.+ .+... + .++.++.||+|||..
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 4567888888899999999999999999865311322 23332 2 578999999999953
No 297
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.13 E-value=1.3e-05 Score=71.57 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=35.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKH 58 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~ 58 (412)
+.+|+|||+|++||++|..|+++ .+||++|....+||.-+.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~T 48 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANT 48 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccce
Confidence 56899999999999999999876 699999999988885433
No 298
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.13 E-value=3e-06 Score=82.66 Aligned_cols=41 Identities=29% Similarity=0.409 Sum_probs=37.2
Q ss_pred cCeEEECCChHHHHHHHHHHHcC--CCeEEEecCCCCCcccCC
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQG--LPSLILERSDCLASLWKH 58 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g--~~v~vie~~~~~g~~~~~ 58 (412)
++|+|||||++||+||..|++.| ++|+|+|+++.+||....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 36999999999999999999987 899999999999996544
No 299
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.11 E-value=1.4e-05 Score=73.41 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=29.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
+|+|||+|.+|+.+|..|.+.|.+|+++.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 58999999999999999999999999999765
No 300
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.09 E-value=5.2e-06 Score=77.73 Aligned_cols=39 Identities=31% Similarity=0.476 Sum_probs=36.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL 55 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~ 55 (412)
|+||+|||||++|+++|..|++.|.+|+|+|+++.+||.
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN 39 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 469999999999999999999999999999999999984
No 301
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.09 E-value=5.2e-06 Score=81.83 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=40.7
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCee
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLK 65 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~ 65 (412)
+||+|||||++||++|..|++.|++|+|+|++..+||.......++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~ 49 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFT 49 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEE
Confidence 589999999999999999999999999999999999865443334433
No 302
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=1e-05 Score=76.69 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=72.9
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC----------CCCcccCCCCCCCee-------eecCCccccCCCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD----------CLASLWKHRTYDRLK-------LHLPKQFCELPLFG 79 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~----------~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 79 (412)
.|||+|||||.||+.||+.+++.|.++.++=-+. .+||.-.......+- -.......++.-.+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 5899999999999999999999999888876652 233321111000000 00000111111111
Q ss_pred CCCCCCCC-----CCHHHHHHHHHHHHHHc-CCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCC
Q 037065 80 FPENFPKY-----PTKRQFIAYIESYASHF-KIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGEN 147 (412)
Q Consensus 80 ~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~ 147 (412)
-..+.... ..+..+..++++..+.. ++.++ ...|+++..++.....-|.+.. ..+.|+.||++||.+
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 11111111 23445556666666554 44444 5578777775532234455555 789999999999943
No 303
>PRK07233 hypothetical protein; Provisional
Probab=98.07 E-value=4.5e-06 Score=80.97 Aligned_cols=40 Identities=33% Similarity=0.422 Sum_probs=36.8
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCC
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKH 58 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~ 58 (412)
+|+|||||++||++|..|++.|++|+|+|+++.+||....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 6899999999999999999999999999999999985433
No 304
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.06 E-value=5.6e-06 Score=81.01 Aligned_cols=42 Identities=24% Similarity=0.357 Sum_probs=38.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHc----CCCeEEEecCCCCCcccCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQ----GLPSLILERSDCLASLWKH 58 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~----g~~v~vie~~~~~g~~~~~ 58 (412)
++||+|||||++||++|..|+++ |++|+|+|+++.+||.-..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 46999999999999999999998 9999999999999985433
No 305
>PLN02576 protoporphyrinogen oxidase
Probab=98.06 E-value=6.4e-06 Score=81.33 Aligned_cols=42 Identities=31% Similarity=0.432 Sum_probs=38.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHc-CCCeEEEecCCCCCcccCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQ-GLPSLILERSDCLASLWKH 58 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~-g~~v~vie~~~~~g~~~~~ 58 (412)
++||+|||||++||++|..|.+. |++|+|+|+++.+||....
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 57999999999999999999999 9999999999999985433
No 306
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.05 E-value=1.2e-05 Score=72.67 Aligned_cols=35 Identities=34% Similarity=0.453 Sum_probs=32.9
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecC
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERS 49 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~ 49 (412)
....||+|||||.+|.++|..|.+.|.+|.||||.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 34689999999999999999999999999999997
No 307
>PLN02568 polyamine oxidase
Probab=98.05 E-value=5.8e-06 Score=81.59 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=38.8
Q ss_pred cccCeEEECCChHHHHHHHHHHHcC-----CCeEEEecCCCCCcccCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQG-----LPSLILERSDCLASLWKH 58 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g-----~~v~vie~~~~~g~~~~~ 58 (412)
+.+||+|||||++||++|..|++.| ++|+|+|++..+||.+..
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 3579999999999999999999887 899999999999996554
No 308
>PLN02676 polyamine oxidase
Probab=98.05 E-value=7.8e-06 Score=79.96 Aligned_cols=49 Identities=33% Similarity=0.509 Sum_probs=42.3
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCC-CeEEEecCCCCCcccCCCCCCCe
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGL-PSLILERSDCLASLWKHRTYDRL 64 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~~~~g~~~~~~~~~~~ 64 (412)
..+||+|||||++||++|..|++.|. +|+|+|++..+||.+....+.+.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~ 74 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGV 74 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCe
Confidence 46899999999999999999999998 69999999999997665544443
No 309
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.05 E-value=1.3e-05 Score=70.86 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=38.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKH 58 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~ 58 (412)
++|++|||+|.+|+..|..|+++|.+|.|+|+++.+||....
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccc
Confidence 589999999999999999999999999999999999995544
No 310
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.05 E-value=2e-05 Score=69.84 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=31.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERS 49 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~ 49 (412)
.+||+|||||.+|++|+++|.+.|.++.||.+.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 589999999999999999999999999999986
No 311
>PLN02268 probable polyamine oxidase
Probab=98.04 E-value=5.3e-06 Score=80.48 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=36.3
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCccc
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLW 56 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~ 56 (412)
++|+|||||++||++|..|.+.|++|+|+|+++.+||..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri 39 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence 479999999999999999999999999999999999843
No 312
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.02 E-value=7.9e-06 Score=80.50 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=36.8
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccC
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWK 57 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~ 57 (412)
+||+|||+|.+||++|..|+++|++|+|+|++...||...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 40 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAG 40 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence 5899999999999999999999999999999998887433
No 313
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.02 E-value=4.2e-05 Score=71.43 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=85.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
...|+++|+|..|+-+|..|....++|++|++.+..- ++ .-...+.+.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~--------~~------------------------lf~~~i~~~ 260 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL--------PR------------------------LFGPSIGQF 260 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch--------hh------------------------hhhHHHHHH
Confidence 5679999999999999999999999999999986321 00 123566777
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFPDVV 156 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p~~~ 156 (412)
++.+.++.+++++.++.+.+++...+.....|.+.+ .++.+|.||+.+| .+|+...+.
T Consensus 261 ~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG--~~p~t~~~~ 319 (478)
T KOG1336|consen 261 YEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIG--IKPNTSFLE 319 (478)
T ss_pred HHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeec--ccccccccc
Confidence 888888899999999999999877764555566666 8899999999999 788877554
No 314
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=7.2e-06 Score=77.65 Aligned_cols=41 Identities=32% Similarity=0.490 Sum_probs=37.7
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc---ccCC
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS---LWKH 58 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~---~~~~ 58 (412)
++|+|+|||.|||++|..|++.|++|+|+|+++.+|| .|..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~ 44 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRD 44 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeec
Confidence 3799999999999999999999999999999999998 4544
No 315
>PRK10262 thioredoxin reductase; Provisional
Probab=98.01 E-value=4.7e-05 Score=70.65 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=72.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+. ....+.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~ 190 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR 190 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHH
Confidence 4689999999999999999999999999999975321 01233455
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCC-CcEEEEEc-----ceEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHAS-GFWRVQTQ-----DSEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~v~~~-----~~~~~~d~vIlAtG~~~~p~~p 153 (412)
+++..++.+++++.++.++++..++.. ..+++... ..++.+|.||+|+| .+|+..
T Consensus 191 ~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G--~~p~~~ 251 (321)
T PRK10262 191 LMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG--HSPNTA 251 (321)
T ss_pred HHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeC--CccChh
Confidence 666667779999999999999764311 01222221 14799999999999 666554
No 316
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.00 E-value=8.3e-06 Score=80.64 Aligned_cols=38 Identities=29% Similarity=0.505 Sum_probs=35.2
Q ss_pred eEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccC
Q 037065 20 PIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWK 57 (412)
Q Consensus 20 vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~ 57 (412)
|+|||||++||++|..|++.|++|+|+|++..+||...
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceE
Confidence 68999999999999999999999999999999998533
No 317
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.97 E-value=7.3e-05 Score=65.15 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=32.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcC------CCeEEEecCCCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQG------LPSLILERSDCLA 53 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g------~~v~vie~~~~~g 53 (412)
.++|+|||||+.|+++|+.|.+++ ..|+|||+..-.|
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ 52 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG 52 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence 579999999999999999999986 6899999986444
No 318
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.97 E-value=2.5e-05 Score=75.51 Aligned_cols=61 Identities=16% Similarity=0.029 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCC
Q 037065 87 YPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENA 148 (412)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~ 148 (412)
.+....+...+...+++.|+.+..+..|++|....+ +.+-|.+.-+.+++.++|-|+|.|.
T Consensus 183 ~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-~~~gVeT~~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGALVIENCPVTGLHVETD-KFGGVETPHGSIETECVVNAAGVWA 243 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-CccceeccCcceecceEEechhHHH
Confidence 355667788888999999999999999999987664 4567888889999999999999765
No 319
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.96 E-value=8.4e-06 Score=79.74 Aligned_cols=42 Identities=19% Similarity=0.409 Sum_probs=36.7
Q ss_pred ccCeEEECCChHHHHHHHHHHHc------CCCeEEEecCCCCCcccCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQ------GLPSLILERSDCLASLWKH 58 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~------g~~v~vie~~~~~g~~~~~ 58 (412)
|++|+|||||++||++|..|.+. |.+|+|+|+++.+||....
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 46899999999999999999986 3799999999999985433
No 320
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.90 E-value=9.8e-05 Score=73.05 Aligned_cols=94 Identities=16% Similarity=0.091 Sum_probs=68.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||||+.|+.+|..|++.+.+|+++++.+.+. . ...
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~------------------------------------~---~~~ 392 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK------------------------------------A---DKV 392 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC------------------------------------h---hHH
Confidence 3689999999999999999999999999999765321 0 122
Q ss_pred HHHHHHH-cCCcccccceEEEEEEcCCCCcE-EEEEcc------eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASH-FKIQPKFKQAVQTALFDHASGFW-RVQTQD------SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~-~v~~~~------~~~~~d~vIlAtG~~~~p~~p 153 (412)
+.+..++ .+++++.++.++++..++ +.. .+.+.+ .++.+|.|++|+| ..|+..
T Consensus 393 l~~~l~~~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~D~vi~a~G--~~Pn~~ 453 (515)
T TIGR03140 393 LQDKLKSLPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDLDGVFVQIG--LVPNTE 453 (515)
T ss_pred HHHHHhcCCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEcCEEEEEeC--CcCCch
Confidence 3334443 589999999998887643 222 133321 4789999999999 666654
No 321
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.89 E-value=8.8e-05 Score=70.16 Aligned_cols=92 Identities=16% Similarity=0.184 Sum_probs=66.8
Q ss_pred cCeEEECCChHHHHHHHHHHH----cC--CCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHH
Q 037065 18 HGPIIVGAGPSGLAVSACLSQ----QG--LPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKR 91 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~----~g--~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
++|+|||+|++|+.+|..|++ .| .+|+|+.. +.+. . ....
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~-~~~l-------------------------------~--~~~~ 191 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAG-ASLL-------------------------------P--GFPA 191 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeC-Cccc-------------------------------c--cCCH
Confidence 589999999999999999985 34 47888833 2110 0 0113
Q ss_pred HHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCC
Q 037065 92 QFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPV 151 (412)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~ 151 (412)
.+.+.+++..++.+++++.+++|..++.. .+.+.+ .++.+|.||+|+| .+|.
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~------~v~~~~g~~i~~D~vi~a~G--~~p~ 244 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPDG------ALILADGRTLPADAILWATG--ARAP 244 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcCC------eEEeCCCCEEecCEEEEccC--CChh
Confidence 45567777788889999999999888532 255544 7899999999999 5553
No 322
>PLN02529 lysine-specific histone demethylase 1
Probab=97.88 E-value=2.1e-05 Score=79.64 Aligned_cols=54 Identities=26% Similarity=0.243 Sum_probs=43.5
Q ss_pred ceeecCccccc---cccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCccc
Q 037065 3 SCKVQNDKQTK---SVLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLW 56 (412)
Q Consensus 3 ~~~~~~~~~~~---~~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~ 56 (412)
.|.++|..... ....++|+|||||++||++|..|++.|++|+|+|+++.+||..
T Consensus 143 nc~vnp~~~~~~~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 143 NFGVSPSFASPIPEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRV 199 (738)
T ss_pred ceeecccccCCCCcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCce
Confidence 46666644321 2346899999999999999999999999999999998888743
No 323
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.87 E-value=0.00016 Score=64.56 Aligned_cols=35 Identities=31% Similarity=0.563 Sum_probs=31.9
Q ss_pred cccCeEEECCChHHHHHHHHHHHc----CCCeEEEecCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQ----GLPSLILERSD 50 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~----g~~v~vie~~~ 50 (412)
..+||+|||||-.|.+.|..|+++ |++|+|+|++.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 378999999999999999999875 68999999985
No 324
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.85 E-value=2e-05 Score=76.91 Aligned_cols=38 Identities=32% Similarity=0.487 Sum_probs=35.9
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCccc
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLW 56 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~ 56 (412)
+|+|||||++||++|..|.+.|++|+|+|+++.+||..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCc
Confidence 58999999999999999999999999999999999854
No 325
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.76 E-value=0.00013 Score=68.71 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=64.2
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCC-eEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLP-SLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~-v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
++++|||+|..|+.+|..|.+.|.+ |+|+++..... . +.. ..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~----~-----------------------------~~~----~~ 215 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE----A-----------------------------PAG----KY 215 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh----C-----------------------------CCC----HH
Confidence 5899999999999999999999987 99999854210 0 011 11
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEE------------------Ec-ceEEEeCEEEEeeCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQ------------------TQ-DSEYISKWLVVATGENAEPVF 152 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~------------------~~-~~~~~~d~vIlAtG~~~~p~~ 152 (412)
..+..+..+++++++..+++++..+....+++. .. ..++.+|.||+|+| .+|..
T Consensus 216 ~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G--~~p~~ 288 (352)
T PRK12770 216 EIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIG--EIPTP 288 (352)
T ss_pred HHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcc--cCCCc
Confidence 223355679999888888887643311111111 11 15799999999999 56553
No 326
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.75 E-value=4.9e-05 Score=72.20 Aligned_cols=139 Identities=24% Similarity=0.299 Sum_probs=69.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCcccccc-------------ccCCChh-----hHHHHHHHhcchHHHH
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPRE-------------IFGFSTF-----GIAMALLRWFPLRLVD 242 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~-------------~~~~~~~-----~~~~~~~~~~~~~~~~ 242 (412)
+|+|||+|++|+=+|..+++.|.+|.++.|++ .+...- ......+ ....++...+......
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~-~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNK-RVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS-SS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCc-ccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 48999999999999999999999999999997 332110 0000000 0111111222222222
Q ss_pred HHHHHHHHHhhcCccccCCCCCC--CCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEe--CCe---EEecCC
Q 037065 243 KILLLMANITLGNTDQLGLRRPK--TGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEIT--KNG---ARFTDG 313 (412)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~--~~~---v~~~~g 313 (412)
....++. +.|+.... .++.+. ...+....-+.+++.+++.+++++.+ |.++. .++ |.++++
T Consensus 81 d~~~ff~--------~~Gv~~~~~~~gr~fP--~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~ 150 (409)
T PF03486_consen 81 DLIAFFE--------ELGVPTKIEEDGRVFP--KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG 150 (409)
T ss_dssp HHHHHHH--------HTT--EEE-STTEEEE--TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT
T ss_pred HHHHHHH--------hcCCeEEEcCCCEECC--CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc
Confidence 2333333 33332110 011110 11133344556677788889999977 87774 344 666678
Q ss_pred cEecccEEEEcCCCCCC
Q 037065 314 QEKEIDAIILATGYKSN 330 (412)
Q Consensus 314 ~~~~~D~vi~atG~~p~ 330 (412)
.++.+|.||+|||-..-
T Consensus 151 ~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 151 GEYEADAVILATGGKSY 167 (409)
T ss_dssp EEEEESEEEE----SSS
T ss_pred ccccCCEEEEecCCCCc
Confidence 89999999999998764
No 327
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.75 E-value=3.9e-05 Score=71.57 Aligned_cols=42 Identities=36% Similarity=0.453 Sum_probs=37.0
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCC-CeEEEecCCCCCcccC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGL-PSLILERSDCLASLWK 57 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~~~~g~~~~ 57 (412)
...+|+|||||.|||+||.+|.+.|. +++|+|..+.+||.-+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 35689999999999999999998875 8999999999998433
No 328
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.75 E-value=0.00047 Score=61.55 Aligned_cols=38 Identities=37% Similarity=0.542 Sum_probs=34.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC--CCCc
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD--CLAS 54 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~--~~g~ 54 (412)
..||+|||+|.+||-+|..|+..|.+|+|+|... .+||
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG 44 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence 5799999999999999999999999999999874 3555
No 329
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.74 E-value=3e-05 Score=74.42 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=40.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHR 59 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~ 59 (412)
.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|...
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~ 46 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASL 46 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccc
Confidence 6899999999999999999999999999999999999987754
No 330
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00017 Score=67.30 Aligned_cols=132 Identities=13% Similarity=0.223 Sum_probs=70.9
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecC-CCCCcccCCCCCCC----eeeecCCcc-------c-----cCCCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERS-DCLASLWKHRTYDR----LKLHLPKQF-------C-----ELPLF 78 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~-~~~g~~~~~~~~~~----~~~~~~~~~-------~-----~~~~~ 78 (412)
..|||+|||||.||+.+|..+++.|.+.+++-.+ +.+|..-....+-+ ..+...+.. + ++.-.
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~L 106 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVL 106 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHh
Confidence 4789999999999999999999999988888765 22221111111111 111111100 0 11111
Q ss_pred C---CCCCCC--CCCCHHHHHHHHHHHHHHc-CCcccccceEEEEEEcCCCCcEE----EEEcc-eEEEeCEEEEeeCCC
Q 037065 79 G---FPENFP--KYPTKRQFIAYIESYASHF-KIQPKFKQAVQTALFDHASGFWR----VQTQD-SEYISKWLVVATGEN 147 (412)
Q Consensus 79 ~---~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~----v~~~~-~~~~~d~vIlAtG~~ 147 (412)
+ -|..|. .-..+..+..++++..... ++.++.+ .|.++...+...... |.+.+ ..+.++.||+.||.+
T Consensus 107 Nrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 107 NRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTF 185 (679)
T ss_pred hccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecCcEeccceEEEeeccc
Confidence 1 111111 1234555566666554433 4555544 566666544322111 33333 789999999999954
Q ss_pred C
Q 037065 148 A 148 (412)
Q Consensus 148 ~ 148 (412)
.
T Consensus 186 L 186 (679)
T KOG2311|consen 186 L 186 (679)
T ss_pred e
Confidence 3
No 331
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.73 E-value=0.00017 Score=64.33 Aligned_cols=189 Identities=20% Similarity=0.241 Sum_probs=98.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHH-HHHHHHHHHhhcCcc
Q 037065 179 NQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVD-KILLLMANITLGNTD 257 (412)
Q Consensus 179 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 257 (412)
.-.|+|||+|.+|+-+|..+++.|.+|.++.+.+. +-.....+. . .++....+ ....++ +
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~-~Ggg~~~gg------~----~~~~~~v~~~~~~~l--------~ 85 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS-FGGGMWGGG------M----LFNKIVVQEEADEIL--------D 85 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC-CCCccccCc------c----ccccccchHHHHHHH--------H
Confidence 44699999999999999999999999999998762 110000000 0 00100000 111111 2
Q ss_pred ccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEe--CC-e---EEec-----------CCcEecc
Q 037065 258 QLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEIT--KN-G---ARFT-----------DGQEKEI 318 (412)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~--~~-~---v~~~-----------~g~~~~~ 318 (412)
++++....... ..+...+..+...+.+.+++.++++..+ |..+. ++ . +... +...+.+
T Consensus 86 ~~gv~~~~~~~---g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~A 162 (257)
T PRK04176 86 EFGIRYKEVED---GLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEA 162 (257)
T ss_pred HCCCCceeecC---cceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEc
Confidence 23332111100 0000111233344556666678888765 44442 22 2 2221 2246899
Q ss_pred cEEEEcCCCCCCCCCcccc----Ccc--CC------CCC-CCCCCCCCCCCCCCCeEEEeeecCccc----------cch
Q 037065 319 DAIILATGYKSNVPTWLKE----CDF--FT------KDG-MPKTPFPNGWKGENGLYTVGFTRRGLQ----------GTA 375 (412)
Q Consensus 319 D~vi~atG~~p~~~~~l~~----~~~--~~------~~G-~~~~~~~~~~~~~~~iya~Gd~~~~~~----------~a~ 375 (412)
+.||.|||-.......+.. .+. .. +.| ..+++ +...-+||+|++|-++.-.. +-.
T Consensus 163 k~VI~ATG~~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~--~t~~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~ 240 (257)
T PRK04176 163 KAVVDATGHDAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVE--NTGEVYPGLYVAGMAANAVHGLPRMGPIFGGML 240 (257)
T ss_pred CEEEEEeCCCcHHHHHHHHHcCCcccccCCccccccCchHHHHHh--cCCeEcCCEEEeehhhhhhcCCCccCchhHhHH
Confidence 9999999976654322211 111 01 111 11122 12234799999997663211 445
Q ss_pred hhHHHHHHHHHHhhcc
Q 037065 376 LDADKIAQDISEQWRK 391 (412)
Q Consensus 376 ~~~~~~a~~i~~~~~~ 391 (412)
..|+.+|+-|.+.+..
T Consensus 241 ~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 241 LSGKKVAELILEKLKK 256 (257)
T ss_pred HhHHHHHHHHHHHhhc
Confidence 6788899998887754
No 332
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.72 E-value=0.00018 Score=69.98 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=65.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||||..|+-+|..|.+.|.+|++++++.... .+.....
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~---------------------------------~~~~~~~--- 315 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRED---------------------------------MTARVEE--- 315 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCccc---------------------------------CCCCHHH---
Confidence 3689999999999999999999999999999875200 0111111
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcE-EEEEc-------------------c--eEEEeCEEEEeeCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFW-RVQTQ-------------------D--SEYISKWLVVATGENAEPVF 152 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~-------------------~--~~~~~d~vIlAtG~~~~p~~ 152 (412)
.+.+++.++++++++.++++..+++ +.+ .+++. + .++.+|.||+|+| ..|..
T Consensus 316 -~~~l~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG--~~p~~ 389 (449)
T TIGR01316 316 -IAHAEEEGVKFHFLCQPVEIIGDEE-GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIG--NGSNP 389 (449)
T ss_pred -HHHHHhCCCEEEeccCcEEEEEcCC-CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCC--CCCCc
Confidence 1234556999988888888765332 222 12211 1 3699999999999 56554
No 333
>PLN02487 zeta-carotene desaturase
Probab=97.72 E-value=4.7e-05 Score=75.36 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=37.6
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCccc
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLW 56 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~ 56 (412)
.+++|+|||+|++||++|..|.+.|++|+|+|+.+.+||.+
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKV 114 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCce
Confidence 35699999999999999999999999999999999988754
No 334
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.71 E-value=4.3e-05 Score=71.23 Aligned_cols=40 Identities=35% Similarity=0.437 Sum_probs=37.5
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
.+.+||+|||+|.+||++|..|.+.|++|+|+|.++.+||
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 3467999999999999999999999999999999999988
No 335
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.70 E-value=5e-05 Score=69.83 Aligned_cols=101 Identities=24% Similarity=0.336 Sum_probs=76.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHc--------------CCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQ--------------GLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPE 82 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~--------------g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (412)
.-.++||||||.|+.+|..|+.. .++|+++|..+.+-.
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~---------------------------- 269 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN---------------------------- 269 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH----------------------------
Confidence 45689999999999999999762 368999999774310
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc---eEEEeCEEEEeeCCCCCCCCCC
Q 037065 83 NFPKYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD---SEYISKWLVVATGENAEPVFPD 154 (412)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~---~~~~~d~vIlAtG~~~~p~~p~ 154 (412)
.-.+.+.+|.+++..+.++++..++.|..+.... ..+.+.+ ..+.|-.+|-|||...+|..-.
T Consensus 270 -----mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~----I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~ 335 (491)
T KOG2495|consen 270 -----MFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT----IHAKTKDGEIEEIPYGLLVWATGNGPRPVIKD 335 (491)
T ss_pred -----HHHHHHHHHHHHHhhhccceeecccEEEeecCcE----EEEEcCCCceeeecceEEEecCCCCCchhhhh
Confidence 2246778888999999999999998888876533 2233333 6799999999999777776654
No 336
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.69 E-value=7.2e-05 Score=76.32 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=37.8
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCccc
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLW 56 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~ 56 (412)
...+|+|||||++|+++|..|.+.|++|+|+|++..+||..
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcc
Confidence 36899999999999999999999999999999999888853
No 337
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.69 E-value=0.00031 Score=69.65 Aligned_cols=94 Identities=14% Similarity=0.041 Sum_probs=67.9
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||||..|+.+|..|+..+.+|+++++.+.+. . ...
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~----------------------------------~-----~~~ 391 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK----------------------------------A-----DQV 391 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc----------------------------------c-----cHH
Confidence 3689999999999999999999999999999875321 0 012
Q ss_pred HHHHHH-HcCCcccccceEEEEEEcCCCCcEE-EEEcc------eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYAS-HFKIQPKFKQAVQTALFDHASGFWR-VQTQD------SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~------~~~~~d~vIlAtG~~~~p~~p 153 (412)
+++... ..+++++.++.++++...+ +..+ ++..+ .++.+|.|++|+| .+|+..
T Consensus 392 l~~~l~~~~gI~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g~~~~i~~D~v~~~~G--~~p~~~ 452 (517)
T PRK15317 392 LQDKLRSLPNVTIITNAQTTEVTGDG--DKVTGLTYKDRTTGEEHHLELEGVFVQIG--LVPNTE 452 (517)
T ss_pred HHHHHhcCCCcEEEECcEEEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeEC--CccCch
Confidence 333333 3589999999999998653 2221 33321 4699999999999 666543
No 338
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.68 E-value=4.9e-05 Score=74.25 Aligned_cols=38 Identities=29% Similarity=0.324 Sum_probs=35.5
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCccc
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLW 56 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~ 56 (412)
+|+|||||++|+++|..|++.|++|+|+|+++.+||..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~ 38 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKV 38 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCcee
Confidence 58999999999999999999999999999999998843
No 339
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.68 E-value=0.00024 Score=63.15 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 179 NQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 179 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.-.|+|||+|.+|+-.|..+++.|.+|.++.++.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4469999999999999999999999999999987
No 340
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.68 E-value=0.0001 Score=77.45 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 177 FKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 177 ~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
..+++|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 348999999999999999999999999999999876
No 341
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.67 E-value=5.7e-05 Score=74.65 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=34.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
.+||+|||+| +|+++|+++++.|.+|+|||+.+..|+
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 6899999999 999999999999999999999876554
No 342
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.62 E-value=7.3e-05 Score=74.59 Aligned_cols=39 Identities=33% Similarity=0.535 Sum_probs=35.5
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC--CCCc
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD--CLAS 54 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~--~~g~ 54 (412)
..+||+|||+|.+||++|+.+++.|.+|+|||+.+ ..||
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 36899999999999999999999999999999988 5555
No 343
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.57 E-value=0.00045 Score=64.29 Aligned_cols=126 Identities=14% Similarity=0.037 Sum_probs=66.1
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCC--CeEEEecCCCCCcccCCCCCCCe--eeecCCccccCCCCCC---------CC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGL--PSLILERSDCLASLWKHRTYDRL--KLHLPKQFCELPLFGF---------PE 82 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~--~v~vie~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~ 82 (412)
..++|+|||||.++...+..|.+.+. +|+++-|+..+-..- ...+ ....|.....+...+- ..
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d----~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~ 264 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMD----DSPFVNEIFSPEYVDYFYSLPDEERRELLREQR 264 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB--------CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTG
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCc----cccchhhhcCchhhhhhhcCCHHHHHHHHHHhH
Confidence 36789999999999999999999864 799999976432100 0000 1111111101111100 00
Q ss_pred -CCCCCCCHHHHHHH-----HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc------eEEEeCEEEEeeCC
Q 037065 83 -NFPKYPTKRQFIAY-----IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD------SEYISKWLVVATGE 146 (412)
Q Consensus 83 -~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~------~~~~~d~vIlAtG~ 146 (412)
...+-++.+.+.+. -+++..+..+.++.+++|+++...++ +.|++.+.+ .++.+|+||+|||.
T Consensus 265 ~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 265 HTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-GGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp GGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-CEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 00011233333221 12333334567788899999998873 378888775 78999999999993
No 344
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.55 E-value=0.00094 Score=65.19 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=66.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCC-CeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGL-PSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
..+|+|||+|..|+.+|..|.+.|. +|++++++.... .+....
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~---------------------------------~~~~~~--- 316 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREE---------------------------------MPASEE--- 316 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc---------------------------------CCCCHH---
Confidence 4689999999999999999999998 899999864210 001111
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCC-CcEEEEE----------------c-c-eEEEeCEEEEeeCCCCCCC
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHAS-GFWRVQT----------------Q-D-SEYISKWLVVATGENAEPV 151 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~v~~----------------~-~-~~~~~d~vIlAtG~~~~p~ 151 (412)
..+.+++.++++++++.+..+..++.. ...++.. . + .++.+|.||+|+| .+|.
T Consensus 317 -~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G--~~p~ 388 (457)
T PRK11749 317 -EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIG--QTPN 388 (457)
T ss_pred -HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECcc--CCCC
Confidence 123345679999999988888754421 0122211 1 1 5799999999999 6665
No 345
>PRK12831 putative oxidoreductase; Provisional
Probab=97.52 E-value=0.00099 Score=64.98 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=31.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
.++|+|||||..|+-+|..|.+.|.+|+++.++.
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4789999999999999999999999999999864
No 346
>PRK06847 hypothetical protein; Provisional
Probab=97.50 E-value=0.0004 Score=65.95 Aligned_cols=147 Identities=21% Similarity=0.239 Sum_probs=75.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchH-HHHHHHHHHHHHhhcCcc
Q 037065 179 NQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLR-LVDKILLLMANITLGNTD 257 (412)
Q Consensus 179 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 257 (412)
.++|+|||+|.+|+-+|..|.+.|.+|+++.+++. .-+ .+. .+.+.....+.+... +.+.+.... .......
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~-~~~---~g~-g~~l~~~~~~~l~~~gl~~~~~~~~--~~~~~~~ 76 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE-WRV---YGA-GITLQGNALRALRELGVLDECLEAG--FGFDGVD 76 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC-Ccc---CCc-eeeecHHHHHHHHHcCCHHHHHHhC--CCccceE
Confidence 46799999999999999999999999999998872 111 111 011111111111000 011111100 0000000
Q ss_pred cc---CC-----CCCCCC-CccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeC--C--eEEecCCcEecccEEE
Q 037065 258 QL---GL-----RRPKTG-PIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITK--N--GARFTDGQEKEIDAII 322 (412)
Q Consensus 258 ~~---~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~--~--~v~~~~g~~~~~D~vi 322 (412)
-+ +. ..+... ..+.....-.++.+...+.+.+...+++++.+ |.++.. + .+.+.+|+++.+|.||
T Consensus 77 ~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI 156 (375)
T PRK06847 77 LFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVV 156 (375)
T ss_pred EECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEE
Confidence 00 00 000000 00000011112333444555565667787765 666653 2 2666789999999999
Q ss_pred EcCCCCCCCC
Q 037065 323 LATGYKSNVP 332 (412)
Q Consensus 323 ~atG~~p~~~ 332 (412)
.|+|..+...
T Consensus 157 ~AdG~~s~~r 166 (375)
T PRK06847 157 GADGLYSKVR 166 (375)
T ss_pred ECcCCCcchh
Confidence 9999988653
No 347
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.49 E-value=0.00013 Score=71.46 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=37.1
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccC
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWK 57 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~ 57 (412)
+||+|||+|++|+.+|..|++.|++|++||+....++.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 5999999999999999999999999999999988887763
No 348
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.48 E-value=8e-05 Score=68.25 Aligned_cols=34 Identities=38% Similarity=0.505 Sum_probs=29.7
Q ss_pred cCeEEECCChHHHHHHHHHHHcC-CCeEEEecCCC
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQG-LPSLILERSDC 51 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g-~~v~vie~~~~ 51 (412)
||++|||+|++|+.+|.+|++.+ .+|+|+|+.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 69999999999999999999997 69999999864
No 349
>PLN02612 phytoene desaturase
Probab=97.48 E-value=0.00015 Score=72.47 Aligned_cols=39 Identities=31% Similarity=0.489 Sum_probs=36.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcc
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASL 55 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~ 55 (412)
.++|+|||+|++||++|..|.+.|++++|+|++..+||.
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence 578999999999999999999999999999999888773
No 350
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.45 E-value=6.1e-05 Score=64.64 Aligned_cols=32 Identities=28% Similarity=0.588 Sum_probs=29.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
+|+|||+|..|+.+|..|++.+.+++++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999999999996655
No 351
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.45 E-value=0.00017 Score=70.79 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=31.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
.++|+|||+|.+|+.+|..|++.|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999754
No 352
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.45 E-value=0.00016 Score=68.42 Aligned_cols=39 Identities=21% Similarity=0.397 Sum_probs=34.7
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
..+||+|||||..|.-+|+-++-+|+++.++|+.+..-|
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SG 104 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASG 104 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCC
Confidence 469999999999999999999999999999999864333
No 353
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.44 E-value=0.00019 Score=66.17 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=36.4
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCC--CeEEEecCCCCCcccC
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGL--PSLILERSDCLASLWK 57 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~--~v~vie~~~~~g~~~~ 57 (412)
....+|+|+|||++||++|+.|++.+- .|+|+|+.+.+||..+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir 53 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR 53 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence 335689999999999999999999865 4677999999998433
No 354
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.43 E-value=0.00028 Score=65.93 Aligned_cols=138 Identities=20% Similarity=0.252 Sum_probs=68.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCcccc---ccccCCChh-hHHHHHHHhcchHHHHHHHHHHHHHhhcCc
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLP---REIFGFSTF-GIAMALLRWFPLRLVDKILLLMANITLGNT 256 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (412)
.|+|||+|..|+|.|..+++.|.+|.++..+...+.- ....+.... .+...+ ..+...... ......
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Ei-dalgg~m~~-~aD~~~------- 71 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREI-DALGGLMGR-AADETG------- 71 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHH-HHTT-SHHH-HHHHHE-------
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHH-hhhhhHHHH-HHhHhh-------
Confidence 4899999999999999999999999999433312221 111111100 111111 011111111 111100
Q ss_pred cccCCCCCCCCCcccc-ccCCCcccccchhhhhhcc-CCEEEEcC-ceEEeC-C----eEEecCCcEecccEEEEcCCC
Q 037065 257 DQLGLRRPKTGPIELK-NITGKTPVLDVGALSQIKS-GKIKVVGG-VKEITK-N----GARFTDGQEKEIDAIILATGY 327 (412)
Q Consensus 257 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~v~v~~~-v~~i~~-~----~v~~~~g~~~~~D~vi~atG~ 327 (412)
-.+.+....-++.... ....-+..+.....+.+++ .+++++.. |.++.. + +|.+.+|+++.+|.||+|||-
T Consensus 72 i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 72 IHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred hhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0011100000000000 0011112334444556655 79999877 888753 2 588899999999999999999
No 355
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.43 E-value=0.0013 Score=58.27 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=34.2
Q ss_pred cccCeEEECCChHHHHHHHHHHHc--CCCeEEEecCCCCCc
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQ--GLPSLILERSDCLAS 54 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~g~ 54 (412)
..+|+||||||+.|++.|.+|.-+ +.+|.|+|+...++-
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~ 87 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAV 87 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhce
Confidence 479999999999999999998866 789999999876653
No 356
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.43 E-value=0.0004 Score=72.47 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 177 FKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 177 ~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
..+++|+|||+|++|+..|..|++.|.+|+++.+.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 357899999999999999999999999999999876
No 357
>PLN02976 amine oxidase
Probab=97.42 E-value=0.00019 Score=76.37 Aligned_cols=44 Identities=30% Similarity=0.423 Sum_probs=40.0
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHR 59 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~ 59 (412)
..++|+|||+|++|+++|..|.+.|++|+|+|+++.+||.|...
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~ 735 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD 735 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence 35899999999999999999999999999999999999976553
No 358
>PLN03000 amine oxidase
Probab=97.41 E-value=0.00023 Score=72.81 Aligned_cols=43 Identities=30% Similarity=0.335 Sum_probs=39.1
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHR 59 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~ 59 (412)
.++|+|||||++|+.+|..|.+.|++|+|+|++..+||.+...
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~ 226 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTK 226 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCccee
Confidence 5799999999999999999999999999999999999865443
No 359
>PLN02463 lycopene beta cyclase
Probab=97.41 E-value=0.00051 Score=66.31 Aligned_cols=137 Identities=14% Similarity=0.143 Sum_probs=74.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHHHHhhcCcccc
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMANITLGNTDQL 259 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (412)
-.|+|||+|.+|+-+|..|++.|.+|.++.+++....|+... +. ...+.. +. +.+.. . .......-+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g----~w-~~~l~~-lg--l~~~l-~----~~w~~~~v~ 95 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYG----VW-VDEFEA-LG--LLDCL-D----TTWPGAVVY 95 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccc----hH-HHHHHH-CC--cHHHH-H----hhCCCcEEE
Confidence 369999999999999999999999999999876322232110 00 001111 10 00000 0 000000000
Q ss_pred CCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC-ceEEeCC----eEEecCCcEecccEEEEcCCCCCC
Q 037065 260 GLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG-VKEITKN----GARFTDGQEKEIDAIILATGYKSN 330 (412)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-v~~i~~~----~v~~~~g~~~~~D~vi~atG~~p~ 330 (412)
. ...........+..-.+..+...+.+.+...+++++.. |.++... .|++++|.++.+|+||.|+|..+.
T Consensus 96 ~-~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 96 I-DDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred E-eCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0 00000000000000112233445566666678888755 6666532 377889989999999999998775
No 360
>PRK06834 hypothetical protein; Provisional
Probab=97.32 E-value=0.0011 Score=65.04 Aligned_cols=148 Identities=14% Similarity=0.123 Sum_probs=73.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcch-HHHHHHHHHHHHHhhcCccc
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPL-RLVDKILLLMANITLGNTDQ 258 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 258 (412)
..|+|||+|.+|+-+|..|++.|.+|+++.+.+..... ..... .+.....+.|.. .+.+.+..............
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~-~~Ra~---~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~ 79 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELV-GSRAG---GLHARTLEVLDQRGIADRFLAQGQVAQVTGFAA 79 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC-Cccee---eECHHHHHHHHHcCcHHHHHhcCCccccceeee
Confidence 46999999999999999999999999999998721111 10100 111111111110 01111111000000000000
Q ss_pred cCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC--ceEEeC--Ce--EEecCCcEecccEEEEcCCCCCCC
Q 037065 259 LGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG--VKEITK--NG--ARFTDGQEKEIDAIILATGYKSNV 331 (412)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~--~~--v~~~~g~~~~~D~vi~atG~~p~~ 331 (412)
.................-.++.+...+.+.+++.+++++.+ +.++.. ++ +++.+|+++.+|+||.|.|..+..
T Consensus 80 ~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 80 TRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred EecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 00000000000000000111223334445556667888766 666643 33 555678889999999999998854
No 361
>PRK02106 choline dehydrogenase; Validated
Probab=97.32 E-value=0.00024 Score=71.13 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=33.2
Q ss_pred ccccCeEEECCChHHHHHHHHHHH-cCCCeEEEecCC
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQ-QGLPSLILERSD 50 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~-~g~~v~vie~~~ 50 (412)
...+|++|||+|++|+.+|.+|++ .|++|+|||+.+
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 346899999999999999999999 799999999985
No 362
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.32 E-value=0.0022 Score=59.13 Aligned_cols=39 Identities=33% Similarity=0.508 Sum_probs=33.1
Q ss_pred cccCeEEECCChHHHHHHHHHHHc----CCCeEEEecC--CCCCc
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQ----GLPSLILERS--DCLAS 54 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~----g~~v~vie~~--~~~g~ 54 (412)
..+||+|||||+.|++.|..|... .+++.++|.. +.++.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~ 79 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGD 79 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccc
Confidence 379999999999999999999864 4799999988 55554
No 363
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.32 E-value=0.00027 Score=60.78 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=24.5
Q ss_pred EEEcCCCCHHHHHHHHhhcCCc-cEEEEeCC
Q 037065 183 LVIGCGNSGMEVSLDLCRHNAI-PHMVARNS 212 (412)
Q Consensus 183 ~vvG~G~~~~e~a~~l~~~g~~-v~~~~r~~ 212 (412)
+|||+|++|+-.|..|.+.|.+ ++++.+++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 6999999999999999999998 99999986
No 364
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.30 E-value=0.00083 Score=65.26 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 177 FKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 177 ~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
...++|+|||+|.+|+-.|..|.+.|.+|+++.+++
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence 346789999999999999999999999999999987
No 365
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.29 E-value=0.0043 Score=64.47 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=31.2
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCC-eEEEecCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLP-SLILERSD 50 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~-v~vie~~~ 50 (412)
.++|+|||||..|+-+|..|.+.|.+ |+++++++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 36899999999999999999999997 99999865
No 366
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.29 E-value=0.0062 Score=62.07 Aligned_cols=95 Identities=12% Similarity=0.075 Sum_probs=63.2
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCC-CeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGL-PSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
.++|+|||+|..|+.+|..|.+.|. +|+++.++... .+ + ....++.+
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~------------------------~m------p--a~~~ei~~ 370 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTRE------------------------EM------P--ANRAEIEE 370 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------cC------C--CCHHHHHH
Confidence 4789999999999999999999997 59999986520 00 0 11223333
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEE-------------------Ecc--eEEEeCEEEEeeCCCCCCCC
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQ-------------------TQD--SEYISKWLVVATGENAEPVF 152 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~-------------------~~~--~~~~~d~vIlAtG~~~~p~~ 152 (412)
. .+.++++++++.+.++..++ +...+. ..+ .++.+|.||+|+| ..|..
T Consensus 371 a-----~~eGV~i~~~~~~~~i~~~~--~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG--~~p~~ 439 (652)
T PRK12814 371 A-----LAEGVSLRELAAPVSIERSE--GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIG--QQVDP 439 (652)
T ss_pred H-----HHcCCcEEeccCcEEEEecC--CeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCC--CcCCc
Confidence 2 23488988888777776543 221111 011 3689999999999 55543
No 367
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.28 E-value=0.00055 Score=64.67 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=28.9
Q ss_pred EEEEcCCCCHHHHHHHHhhc--CCccEEEEeCC
Q 037065 182 VLVIGCGNSGMEVSLDLCRH--NAIPHMVARNS 212 (412)
Q Consensus 182 v~vvG~G~~~~e~a~~l~~~--g~~v~~~~r~~ 212 (412)
|+|||+|..|+.+|..|.+. |.+|.++.+.+
T Consensus 2 viIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 79999999999999999987 89999999877
No 368
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.28 E-value=0.0021 Score=62.97 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=63.9
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCC-CeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGL-PSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
.++|+|||+|..|+-+|..+.+.|. +|++++.....+..+ .... .++.++. .
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~------------------~~~~----~~~~~~~-----~ 333 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR------------------NKNN----PWPYWPM-----K 333 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc------------------cccc----CCcccch-----H
Confidence 4689999999999999999999886 788776544211100 0000 0001111 1
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEE-EEEc-------------c--eEEEeCEEEEeeCCCCCCC
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWR-VQTQ-------------D--SEYISKWLVVATGENAEPV 151 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~-------------~--~~~~~d~vIlAtG~~~~p~ 151 (412)
...+.+++.++++++++.++.+...+ +.++ |+.. + .++.+|.||+|+| .+|.
T Consensus 334 ~~~~~~~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G--~~p~ 401 (471)
T PRK12810 334 LEVSNAHEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMG--FTGP 401 (471)
T ss_pred HHHHHHHHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcC--cCCC
Confidence 11233455699998888888886422 3321 2211 1 5799999999999 5554
No 369
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.001 Score=59.26 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=32.5
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCC
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLA 53 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g 53 (412)
..|-|||||.+|..+|+++++.|++|.++|.++.-+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 468999999999999999999999999999986443
No 370
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.26 E-value=0.0053 Score=58.53 Aligned_cols=38 Identities=32% Similarity=0.365 Sum_probs=32.9
Q ss_pred cCeEEECCChHHHHHHHHHHHc----CCCeEEEecCCCCCcc
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQ----GLPSLILERSDCLASL 55 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~----g~~v~vie~~~~~g~~ 55 (412)
++.=|||+|+|+|++|..|-+. |-+|+|+|+.+..||.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs 44 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS 44 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence 4678999999999999999996 4599999999877763
No 371
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.24 E-value=0.00087 Score=65.14 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhh--cCCccEEEEeCC
Q 037065 177 FKNQKVLVIGCGNSGMEVSLDLCR--HNAIPHMVARNS 212 (412)
Q Consensus 177 ~~~~~v~vvG~G~~~~e~a~~l~~--~g~~v~~~~r~~ 212 (412)
..+++|+|||+|+.|+..|..|++ .|.+|+++.+.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 346789999999999999999987 689999999988
No 372
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.23 E-value=0.0031 Score=60.43 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 178 KNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 178 ~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
..++++|||+|++|+-.|..|.+.|.+++++.|.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 36789999999999999999999999999999998
No 373
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.23 E-value=0.00017 Score=59.99 Aligned_cols=129 Identities=18% Similarity=0.278 Sum_probs=74.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHc--CCCeEEEecCCCC-CcccCCC-CCCCeeeecCCccc-cCCCCCCCCCCCCCC---
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQ--GLPSLILERSDCL-ASLWKHR-TYDRLKLHLPKQFC-ELPLFGFPENFPKYP--- 88 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~--g~~v~vie~~~~~-g~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--- 88 (412)
..||+|||+|.+||++|+.+.++ +.+|.|||..-.. ||.|... .+..+....|..++ +--+.+|.+. ..|.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpYede-gdYVVVK 154 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPYEDE-GDYVVVK 154 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCcccC-CCEEEEe
Confidence 46999999999999999999865 6799999987544 4577553 34444445553322 2223343322 2222
Q ss_pred CHHHHHH-HHHHHHHHcCCcccccceEEEEEEc-CCC---------CcEEEEEcc---------eEEEeCEEEEeeCC
Q 037065 89 TKRQFIA-YIESYASHFKIQPKFKQAVQTALFD-HAS---------GFWRVQTQD---------SEYISKWLVVATGE 146 (412)
Q Consensus 89 ~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~~-~~~---------~~~~v~~~~---------~~~~~d~vIlAtG~ 146 (412)
+...|.. .+.+.....+++++-.+.|+++... ++. ..|++.+.+ ..+++..|+-+||+
T Consensus 155 HAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~vvS~tGH 232 (328)
T KOG2960|consen 155 HAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVVVSTTGH 232 (328)
T ss_pred eHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCCCCeeeEEEEEEccCC
Confidence 2333332 3344445556665544445544332 111 225444433 56788888888884
No 374
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.22 E-value=0.0024 Score=63.90 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=63.7
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+. . ... .
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~----------------------------------~-~~~---~ 184 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT----------------------------------C-AKL---I 184 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccc----------------------------------c-CHH---H
Confidence 4689999999999999999999999999999975320 0 011 1
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEE---c-ceE--E--EeCE----EEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQT---Q-DSE--Y--ISKW----LVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~---~-~~~--~--~~d~----vIlAtG~~~~p~~p 153 (412)
.++..+..++++++++.|+.+..++ ....+.. . +.. + .+|. ||+|+| .+|+..
T Consensus 185 ~~~~~~~~gV~i~~~~~V~~i~~~~--~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G--~~Pn~~ 249 (555)
T TIGR03143 185 AEKVKNHPKIEVKFNTELKEATGDD--GLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVG--YAPSSE 249 (555)
T ss_pred HHHHHhCCCcEEEeCCEEEEEEcCC--cEEEEEEEECCCCCEEEEeccccccceEEEEEeC--CCCChh
Confidence 2233344589999999999887433 2111211 1 222 2 3566 999999 666654
No 375
>PLN02661 Putative thiazole synthesis
Probab=97.18 E-value=0.0088 Score=55.21 Aligned_cols=37 Identities=16% Similarity=0.559 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhc-CCccEEEEeCC
Q 037065 176 EFKNQKVLVIGCGNSGMEVSLDLCRH-NAIPHMVARNS 212 (412)
Q Consensus 176 ~~~~~~v~vvG~G~~~~e~a~~l~~~-g~~v~~~~r~~ 212 (412)
....-.|+|||+|.+|+-.|..|++. +.+|.++.++.
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 34455799999999999999999976 78999999876
No 376
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.18 E-value=0.00097 Score=63.75 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
..|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 469999999999999999999999999999986
No 377
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.14 E-value=0.0027 Score=67.78 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=67.9
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCC-CeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGL-PSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
..+|+|||+|+.|+.+|..|++.|. .|+|+|..+.+ ..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~ 355 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SP 355 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hH
Confidence 3689999999999999999999996 58899876421 11
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEE---cceEEEeCEEEEeeCCCCCCCCC
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWRVQT---QDSEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~---~~~~~~~d~vIlAtG~~~~p~~p 153 (412)
.+.+.+++.+++++.++.|+.+..++....+++.. +..++.+|.|+++.| ..|+..
T Consensus 356 ~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G--~~Pnt~ 414 (985)
T TIGR01372 356 EARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGG--WTPVVH 414 (985)
T ss_pred HHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCC--cCchhH
Confidence 23344567799999999998887543211223332 226799999999999 776653
No 378
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.14 E-value=0.0012 Score=68.38 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 177 FKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 177 ~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
..+++|+|||+|+.|+.+|..|+..|.+|+++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 468899999999999999999999999999999865
No 379
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.12 E-value=0.00084 Score=64.02 Aligned_cols=145 Identities=19% Similarity=0.287 Sum_probs=76.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHH-HHHHHHHH----HHhhc
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLV-DKILLLMA----NITLG 254 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~ 254 (412)
..|+|||+|..|+-+|..|++.|.+|+++.+.+..+.+.. .+. .+.....+.|..... +++..... .....
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~-r~~---~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~ 78 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG-RGI---ALSPNALRALERLGLWDRLEALGVPPLHVMVVD 78 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCc-eee---eecHhHHHHHHHcCChhhhhhccCCceeeEEEe
Confidence 4699999999999999999999999999999832332222 111 222222222211111 11111000 00000
Q ss_pred Cccc--cCCCCCCCCCccccccCCCcccccchhhhhhcc-CCEEEEcC--ceEEeCCe----EEec-CCcEecccEEEEc
Q 037065 255 NTDQ--LGLRRPKTGPIELKNITGKTPVLDVGALSQIKS-GKIKVVGG--VKEITKNG----ARFT-DGQEKEIDAIILA 324 (412)
Q Consensus 255 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~--v~~i~~~~----v~~~-~g~~~~~D~vi~a 324 (412)
.... .......... ......-.+..+...+.+.+.. .+++++.+ |+.+..++ ++++ +|+++.+|+||-|
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgA 157 (387)
T COG0654 79 DGGRRLLIFDAAELGR-GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGA 157 (387)
T ss_pred cCCceeEEecccccCC-CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEEC
Confidence 0000 0000000000 0000111112334445566644 55899876 77776442 7778 9999999999999
Q ss_pred CCCCC
Q 037065 325 TGYKS 329 (412)
Q Consensus 325 tG~~p 329 (412)
=|...
T Consensus 158 DG~~S 162 (387)
T COG0654 158 DGANS 162 (387)
T ss_pred CCCch
Confidence 99765
No 380
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.12 E-value=0.001 Score=69.80 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 178 KNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 178 ~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.+++|+|||+|+.|+..|..|++.|.+|+++.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 45789999999999999999999999999999876
No 381
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.11 E-value=0.00085 Score=71.28 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 178 KNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 178 ~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.+++|+|||+|+.|+..|..|++.|.+|+++.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 35789999999999999999999999999999876
No 382
>PRK09126 hypothetical protein; Provisional
Probab=97.10 E-value=0.0021 Score=61.37 Aligned_cols=33 Identities=18% Similarity=0.457 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
-.|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 359999999999999999999999999999987
No 383
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.08 E-value=0.0059 Score=59.69 Aligned_cols=95 Identities=16% Similarity=0.166 Sum_probs=64.2
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCC-CeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGL-PSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
.++++|||+|..|+.+|..+.+.|. +|+++++++... + + ....++
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~---------------------~-----~------~~~~e~-- 327 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEAN---------------------M-----P------GSRREV-- 327 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCccc---------------------C-----C------CCHHHH--
Confidence 4789999999999999999999996 799999865311 0 0 011222
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEE-EEE-------------------cc--eEEEeCEEEEeeCCCCCCC
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWR-VQT-------------------QD--SEYISKWLVVATGENAEPV 151 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~-------------------~~--~~~~~d~vIlAtG~~~~p~ 151 (412)
+.+.+.++++++++.++.+..+++ +.++ +++ .+ .++.+|.||+|+| ..|.
T Consensus 328 ---~~~~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G--~~p~ 399 (467)
T TIGR01318 328 ---ANAREEGVEFLFNVQPVYIECDED-GRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFG--FQPH 399 (467)
T ss_pred ---HHHHhcCCEEEecCCcEEEEECCC-CeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCc--CCCC
Confidence 234456899988888888765332 2211 111 01 4789999999999 5555
No 384
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.08 E-value=0.0067 Score=62.00 Aligned_cols=95 Identities=13% Similarity=0.134 Sum_probs=63.2
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCC-CeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGL-PSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
.++|+|||||..|+-+|..+.+.|. +|+++.+++... | +......
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~--~-------------------------------~~~~~e~- 513 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEAN--M-------------------------------PGSKKEV- 513 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCC--C-------------------------------CCCHHHH-
Confidence 4689999999999999999999997 699998865211 0 1111111
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcE-EEEE-------------------cc--eEEEeCEEEEeeCCCCCCC
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFW-RVQT-------------------QD--SEYISKWLVVATGENAEPV 151 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~-------------------~~--~~~~~d~vIlAtG~~~~p~ 151 (412)
+.+++.|+++++++.++++..+++ +.. .|++ .+ .++.+|.||+|.| ..|.
T Consensus 514 ---~~~~~~Gv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG--~~p~ 585 (654)
T PRK12769 514 ---KNAREEGANFEFNVQPVALELNEQ-GHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFG--FNPH 585 (654)
T ss_pred ---HHHHHcCCeEEeccCcEEEEECCC-CeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECcc--CCCC
Confidence 235556899888887777754332 221 1111 11 3699999999999 5554
No 385
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.06 E-value=0.0023 Score=63.37 Aligned_cols=32 Identities=31% Similarity=0.522 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.|+|||||..|+++|..+++.|.+|.++.++.
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 59999999999999999999999999999874
No 386
>PRK05868 hypothetical protein; Validated
Probab=97.02 E-value=0.0033 Score=59.60 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
++|+|||+|..|+-+|..|++.|.+|+++.+++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 479999999999999999999999999999987
No 387
>PRK07236 hypothetical protein; Provisional
Probab=96.95 E-value=0.0031 Score=60.13 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 178 KNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 178 ~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
...+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 35689999999999999999999999999999987
No 388
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.92 E-value=0.0018 Score=63.68 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 177 FKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 177 ~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
..+++++|+|+|.+|+++|..|.+.|.+|+++.+++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 346789999999999999999999999999998765
No 389
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.88 E-value=0.013 Score=47.91 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=25.6
Q ss_pred EEEcCCCCHHHHHHHHhhcC-----CccEEEEeCC
Q 037065 183 LVIGCGNSGMEVSLDLCRHN-----AIPHMVARNS 212 (412)
Q Consensus 183 ~vvG~G~~~~e~a~~l~~~g-----~~v~~~~r~~ 212 (412)
+|||+|.+|+-++..|.+.. .+|+++.+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 59999999999999999883 4789998865
No 390
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.85 E-value=0.0059 Score=58.63 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=30.4
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.|+|||+|..|+-+|..|++.|.+|+++.+.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 59999999999999999999999999999876
No 391
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.85 E-value=0.0052 Score=58.65 Aligned_cols=31 Identities=26% Similarity=0.545 Sum_probs=29.5
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 182 VLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 182 v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
|+|||+|.+|+-+|..|++.|.+|.++.+++
T Consensus 2 viIiGaG~AGl~~A~~la~~g~~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPGLRVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 8999999999999999999999999999876
No 392
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.84 E-value=0.005 Score=55.51 Aligned_cols=105 Identities=11% Similarity=0.069 Sum_probs=76.3
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHH
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFI 94 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
++.++++|||||+-++..|-.++..|.++.++-|.+.+-. . -.+.+.
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR-------------------------------~--FD~~i~ 233 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLR-------------------------------G--FDEMIS 233 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhc-------------------------------c--hhHHHH
Confidence 3468999999999999999999999999999988764210 0 013444
Q ss_pred HHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcceEEEeCEEEEeeCCCCCCCCCC
Q 037065 95 AYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDSEYISKWLVVATGENAEPVFPD 154 (412)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~~d~vIlAtG~~~~p~~p~ 154 (412)
+.+.+..+.-+++++.++.++.+.+..+.....++..+....+|.|+.|+| ..|+.-.
T Consensus 234 ~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiG--R~Pntk~ 291 (478)
T KOG0405|consen 234 DLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIG--RKPNTKG 291 (478)
T ss_pred HHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEec--CCCCccc
Confidence 555566666699999999999998877543333344444456999999999 6666543
No 393
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.83 E-value=0.0031 Score=60.37 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 179 NQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 179 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
+.+|+|||+|.+|+-+|..|++.|.+|+++.|++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 4689999999999999999999999999999987
No 394
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0027 Score=55.88 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=28.2
Q ss_pred ccCeEEECCChHHHHHHHHHHHcC-------CCeEEEecC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQG-------LPSLILERS 49 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g-------~~v~vie~~ 49 (412)
+.+|+|||+|.-||++|..+.+.. .+|+++..+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 468999999999999999988843 578888876
No 395
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.78 E-value=0.0055 Score=56.49 Aligned_cols=100 Identities=17% Similarity=0.165 Sum_probs=71.4
Q ss_pred ccCeEEECCChHHHHHHHHHHHc----CCCe-EEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQ----GLPS-LILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKR 91 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~----g~~v-~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
...|.|||+|.-|..+|+.|.++ |.+| -||+....++ .+-..
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~---------------------------------kiLPe 393 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME---------------------------------KILPE 393 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh---------------------------------hhhHH
Confidence 46799999999999999999885 3333 3343322111 01122
Q ss_pred HHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCC
Q 037065 92 QFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p 153 (412)
-+.++-.+..++-|+.++-+..|.++.... ..+.+.+.+ .++..|.||+|+| ..|+..
T Consensus 394 yls~wt~ekir~~GV~V~pna~v~sv~~~~--~nl~lkL~dG~~l~tD~vVvavG--~ePN~e 452 (659)
T KOG1346|consen 394 YLSQWTIEKIRKGGVDVRPNAKVESVRKCC--KNLVLKLSDGSELRTDLVVVAVG--EEPNSE 452 (659)
T ss_pred HHHHHHHHHHHhcCceeccchhhhhhhhhc--cceEEEecCCCeeeeeeEEEEec--CCCchh
Confidence 334455556677799999999999888776 566678877 7899999999999 777654
No 396
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.76 E-value=0.0025 Score=60.48 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=73.2
Q ss_pred EEEEcCCCCHHHHHHHH--hhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHHHHhhcCcccc
Q 037065 182 VLVIGCGNSGMEVSLDL--CRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMANITLGNTDQL 259 (412)
Q Consensus 182 v~vvG~G~~~~e~a~~l--~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (412)
|+|||+|.+|.-+|..| +..|.+|.++.+.+....++.. ..+.+...+.+ .+.. ....-...
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~------tW~~~~~~~~~---~~~~-------v~~~w~~~ 65 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDR------TWCFWEKDLGP---LDSL-------VSHRWSGW 65 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCc------ccccccccccc---hHHH-------HheecCce
Confidence 79999999999999999 7778999999987732222211 11111111110 0111 00011111
Q ss_pred CCCCCCCCCcccc--ccCCCcccccchhhhhhccCCEEEEcC-ceEEeCCe----EEecCCcEecccEEEEcCCCCCC
Q 037065 260 GLRRPKTGPIELK--NITGKTPVLDVGALSQIKSGKIKVVGG-VKEITKNG----ARFTDGQEKEIDAIILATGYKSN 330 (412)
Q Consensus 260 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~v~~~-v~~i~~~~----v~~~~g~~~~~D~vi~atG~~p~ 330 (412)
.+..+........ +..-.+..+...+.+.++..++.+... |.++...+ +++++|.++.+++||-|.|..+.
T Consensus 66 ~v~~~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 66 RVYFPDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEeCCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 1111111111111 001112334444566666566666655 88887553 58899999999999999997664
No 397
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.75 E-value=0.0058 Score=58.50 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=28.5
Q ss_pred EEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 183 LVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 183 ~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
+|||+|.+|+-.|..+++.|.+|+++.+++
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence 589999999999999999999999999987
No 398
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.75 E-value=0.0025 Score=62.52 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 178 KNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 178 ~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.+++++|||+|..|+.+|..|.+.|.+|+++.+.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 46799999999999999999999999999999877
No 399
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.71 E-value=0.0049 Score=58.78 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=30.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 7 dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07608 7 DVVVVGGGLVGASLALALAQSGLRVALLAPRA 38 (388)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 59999999999999999999999999999987
No 400
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.68 E-value=0.0044 Score=59.44 Aligned_cols=146 Identities=15% Similarity=0.143 Sum_probs=73.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhcC--CccEEEEeCCCcccccc-ccCCChhhHHHHHHHhcchHHHHHHHHHHHHHhhcCcc
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHN--AIPHMVARNSVHVLPRE-IFGFSTFGIAMALLRWFPLRLVDKILLLMANITLGNTD 257 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g--~~v~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (412)
.|+|||+|..|+-+|..|++.| .+|+++.+++. ..+.. ..+.........+.+.+.. .+.+..... ......
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~-~~~~~~~~~~~l~~~~~~~l~~lGl--~~~~~~~~~--~~~~~~ 77 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA-GAWSRDPRASAIAAAARRMLEALGV--WDEIAPEAQ--PITDMV 77 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc-ccCCCCcceEEecHHHHHHHHHCCC--hhhhhhhcC--cccEEE
Confidence 4899999999999999999985 89999999872 11111 1111111111111222211 111111000 000000
Q ss_pred ccC--CCCCCC-CCccc-ccc--------CCCcccccchhhhhhccCCEEEEcC--ceEEeC--Ce--EEecCCcEeccc
Q 037065 258 QLG--LRRPKT-GPIEL-KNI--------TGKTPVLDVGALSQIKSGKIKVVGG--VKEITK--NG--ARFTDGQEKEID 319 (412)
Q Consensus 258 ~~~--~~~~~~-~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~v~v~~~--v~~i~~--~~--v~~~~g~~~~~D 319 (412)
-+. ...+.. ..... ... .-.+..+...+.+.+++.+++++.+ |.++.. +. +++.+|+++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 157 (403)
T PRK07333 78 ITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEAR 157 (403)
T ss_pred EEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeC
Confidence 000 000000 00000 000 0012233444566666678888765 777653 23 666788899999
Q ss_pred EEEEcCCCCCCC
Q 037065 320 AIILATGYKSNV 331 (412)
Q Consensus 320 ~vi~atG~~p~~ 331 (412)
+||.|.|..+..
T Consensus 158 ~vI~AdG~~S~v 169 (403)
T PRK07333 158 LLVAADGARSKL 169 (403)
T ss_pred EEEEcCCCChHH
Confidence 999999987754
No 401
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.68 E-value=0.0016 Score=64.60 Aligned_cols=35 Identities=37% Similarity=0.583 Sum_probs=32.8
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
..+|++|||+|.+|..+|..|+..|.+|+|+|+..
T Consensus 6 ~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 47999999999999999999998899999999984
No 402
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.65 E-value=0.0053 Score=58.48 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=30.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.|+|||+|..|.-+|..|++.|.+|+++.+.+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 69999999999999999999999999999875
No 403
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.63 E-value=0.0017 Score=64.69 Aligned_cols=32 Identities=31% Similarity=0.476 Sum_probs=30.3
Q ss_pred CeEEECCChHHHHHHHHHHHcC-CCeEEEecCC
Q 037065 19 GPIIVGAGPSGLAVSACLSQQG-LPSLILERSD 50 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g-~~v~vie~~~ 50 (412)
|++|||+|.+|+.+|.+|++.+ .+|+|+|+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 6999999985
No 404
>PRK06753 hypothetical protein; Provisional
Probab=96.62 E-value=0.0073 Score=57.29 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=30.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
+|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 69999999999999999999999999999998
No 405
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.62 E-value=0.0068 Score=57.92 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
-.|+|||+|..|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 369999999999999999999999999999876
No 406
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.025 Score=51.64 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=68.7
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
.++|+|||||-+++..|+.|.+.+.+|+++=|++.+. .. +.
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-----------------------------------a~----~~ 183 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-----------------------------------AE----EI 183 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-----------------------------------cC----HH
Confidence 4699999999999999999999999999999987432 11 22
Q ss_pred HHHHHHHc-CCcccccceEEEEEEcCCCCcEEEEEc---ceEEEeCEEEEeeCCCCCCCC
Q 037065 97 IESYASHF-KIQPKFKQAVQTALFDHASGFWRVQTQ---DSEYISKWLVVATGENAEPVF 152 (412)
Q Consensus 97 ~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~v~~~---~~~~~~d~vIlAtG~~~~p~~ 152 (412)
+.+.+++. ++.+++++.+..+.-++ ....++... ...+.+|.|.++.| ..|..
T Consensus 184 ~~~~l~~~~~i~~~~~~~i~ei~G~~-v~~v~l~~~~~~~~~~~~~gvf~~iG--~~p~~ 240 (305)
T COG0492 184 LVERLKKNVKIEVLTNTVVKEILGDD-VEGVVLKNVKGEEKELPVDGVFIAIG--HLPNT 240 (305)
T ss_pred HHHHHHhcCCeEEEeCCceeEEecCc-cceEEEEecCCceEEEEeceEEEecC--CCCch
Confidence 22333333 78888999998888755 233333322 25789999999999 66654
No 407
>PLN02785 Protein HOTHEAD
Probab=96.58 E-value=0.0025 Score=63.80 Aligned_cols=33 Identities=39% Similarity=0.615 Sum_probs=31.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
.||++|||+|.+|+.+|.+|++ +.+|+|+|+.+
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 6999999999999999999999 68999999986
No 408
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.56 E-value=0.0054 Score=58.38 Aligned_cols=31 Identities=19% Similarity=0.474 Sum_probs=30.1
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 182 VLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 182 v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
|+|||+|.+|+-+|..|++.|.+|+++.|++
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 8999999999999999999999999999998
No 409
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.56 E-value=0.0051 Score=59.45 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=30.6
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.|+|||+|.+|.-+|..|++.|.+|.++.+.+
T Consensus 7 DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 7 DAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 69999999999999999999999999999986
No 410
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.55 E-value=0.008 Score=57.94 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHh-hcCCccEEEEeCC
Q 037065 178 KNQKVLVIGCGNSGMEVSLDLC-RHNAIPHMVARNS 212 (412)
Q Consensus 178 ~~~~v~vvG~G~~~~e~a~~l~-~~g~~v~~~~r~~ 212 (412)
.+++|+|||+|++|+..|..|+ +.|.+|+++.+.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 5789999999999999999765 5699999999988
No 411
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.55 E-value=0.0075 Score=57.93 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=30.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARN 211 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~ 211 (412)
..|+|||+|..|+-+|..|++.|.+|+++.+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 46999999999999999999999999999986
No 412
>PRK07588 hypothetical protein; Provisional
Probab=96.52 E-value=0.0067 Score=57.96 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=30.6
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 69999999999999999999999999999987
No 413
>PRK06184 hypothetical protein; Provisional
Probab=96.51 E-value=0.011 Score=58.56 Aligned_cols=33 Identities=21% Similarity=0.608 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
-.|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 469999999999999999999999999999987
No 414
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.037 Score=53.61 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhcCCc-cEEEEeCC
Q 037065 179 NQKVLVIGCGNSGMEVSLDLCRHNAI-PHMVARNS 212 (412)
Q Consensus 179 ~~~v~vvG~G~~~~e~a~~l~~~g~~-v~~~~r~~ 212 (412)
...|+|||+|.+|+-.|..|.+.|.. +.++.+++
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 45799999999999999999999988 99999986
No 415
>PRK09897 hypothetical protein; Provisional
Probab=96.46 E-value=0.013 Score=57.72 Aligned_cols=33 Identities=15% Similarity=0.399 Sum_probs=28.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCC--ccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNA--IPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~--~v~~~~r~~ 212 (412)
++|+|||+|.+|+-+|..|.+.+. +|+++.+++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 479999999999999999987654 789999866
No 416
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.41 E-value=0.0029 Score=58.99 Aligned_cols=40 Identities=25% Similarity=0.474 Sum_probs=36.5
Q ss_pred ccccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCc
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLAS 54 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~ 54 (412)
+..+|++|||+|..||++|..|++.|.+|+++|++...||
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 3479999999999999999999999999999999966665
No 417
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.39 E-value=0.015 Score=56.10 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 179 NQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 179 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
...|+|||+|..|+-+|..|++.|.+|+++.+++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 3469999999999999999999999999999988
No 418
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.37 E-value=0.039 Score=56.27 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=62.8
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCC-CeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGL-PSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
.++|+|||+|..|+.+|..+.+.|. +|+++.+++... | + ....++..
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~--~----------------------------~--~~~~e~~~ 498 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVS--M----------------------------P--GSRKEVVN 498 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCccc--C----------------------------C--CCHHHHHH
Confidence 4789999999999999999999986 799998865311 0 0 11222222
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEE-EE---E----------------cc--eEEEeCEEEEeeCCCCCCC
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWR-VQ---T----------------QD--SEYISKWLVVATGENAEPV 151 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~---~----------------~~--~~~~~d~vIlAtG~~~~p~ 151 (412)
+++.|+++++++.++.+..+++ +.++ +. . .+ ..+.+|.||+|.| ..|.
T Consensus 499 -----a~~eGv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG--~~p~ 568 (639)
T PRK12809 499 -----AREEGVEFQFNVQPQYIACDED-GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFG--FQAH 568 (639)
T ss_pred -----HHHcCCeEEeccCCEEEEECCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcC--CCCC
Confidence 3455899888887777754332 2211 11 1 11 4789999999999 5553
No 419
>PRK07045 putative monooxygenase; Reviewed
Probab=96.33 E-value=0.017 Score=55.17 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=31.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
-+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 379999999999999999999999999999988
No 420
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.33 E-value=0.0099 Score=58.78 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 179 NQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 179 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.|+|+|||+|.+|+-.|..|.+.|.+++++.+++
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~ 34 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD 34 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence 3799999999999999999999999999999998
No 421
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.26 E-value=0.012 Score=56.12 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=29.9
Q ss_pred EEEEcCCCCHHHHHHHHhhcC-CccEEEEeCC
Q 037065 182 VLVIGCGNSGMEVSLDLCRHN-AIPHMVARNS 212 (412)
Q Consensus 182 v~vvG~G~~~~e~a~~l~~~g-~~v~~~~r~~ 212 (412)
|+|||+|.+|+-+|..|++.| .+|+++.+.+
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 899999999999999999999 9999999987
No 422
>PRK08244 hypothetical protein; Provisional
Probab=96.25 E-value=0.013 Score=57.92 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=30.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 4 dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 4 EVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 59999999999999999999999999999987
No 423
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.23 E-value=0.0072 Score=58.94 Aligned_cols=34 Identities=29% Similarity=0.515 Sum_probs=31.5
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
.++|+|+|+|..|+.+|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999854
No 424
>PRK13984 putative oxidoreductase; Provisional
Probab=96.21 E-value=0.049 Score=55.30 Aligned_cols=31 Identities=6% Similarity=0.253 Sum_probs=25.7
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCC------CeEEEe
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGL------PSLILE 47 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~------~v~vie 47 (412)
.++|+|||||..|+-+|..|.+.+. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 3689999999999999999998753 566654
No 425
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.20 E-value=0.023 Score=53.37 Aligned_cols=60 Identities=15% Similarity=0.036 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc--eEEEeCEEEEeeCCCCCCC
Q 037065 88 PTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD--SEYISKWLVVATGENAEPV 151 (412)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~--~~~~~d~vIlAtG~~~~p~ 151 (412)
-....+.+.+...+++.+++++++++|++| .+ +.|.+.+.. ..+.+|+||+|||..+.|.
T Consensus 83 ~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~ 144 (376)
T TIGR03862 83 MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GTLRFETPDGQSTIEADAVVLALGGASWSQ 144 (376)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--CcEEEEECCCceEEecCEEEEcCCCccccc
Confidence 367899999999999999999999999999 22 357787644 5699999999999755443
No 426
>PLN02697 lycopene epsilon cyclase
Probab=96.20 E-value=0.017 Score=57.05 Aligned_cols=132 Identities=16% Similarity=0.225 Sum_probs=70.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCCChhhHHHHHHHhcchHHHHHHHHHHHHHhhcCcccc
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGFSTFGIAMALLRWFPLRLVDKILLLMANITLGNTDQL 259 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (412)
-.|+|||+|.+|+-+|..+++.|.+|.++.+...+. ++ .|. . ...+.. +. ...... .......-+
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~-~n--~Gv---W-~~~l~~-lg---l~~~i~----~~w~~~~v~ 173 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-NN--YGV---W-EDEFKD-LG---LEDCIE----HVWRDTIVY 173 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC-Cc--ccc---c-hhHHHh-cC---cHHHHH----hhcCCcEEE
Confidence 369999999999999999999999999997653211 11 111 0 001111 11 000000 001111000
Q ss_pred CCCCCCCCCc--cccccCCCcccccchhhhhhccCCEEEEcC-ceEEeC--Ce---EEecCCcEecccEEEEcCCCCC
Q 037065 260 GLRRPKTGPI--ELKNITGKTPVLDVGALSQIKSGKIKVVGG-VKEITK--NG---ARFTDGQEKEIDAIILATGYKS 329 (412)
Q Consensus 260 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-v~~i~~--~~---v~~~~g~~~~~D~vi~atG~~p 329 (412)
.+..... ...+..-.+..+...+.+.+...++++... |.++.. ++ +++.+|.++.+++||.|+|..+
T Consensus 174 ---~~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 174 ---LDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred ---ecCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 0000000 000000112233455566666677887655 766652 33 3557888999999999999876
No 427
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.17 E-value=0.0077 Score=59.68 Aligned_cols=32 Identities=34% Similarity=0.502 Sum_probs=29.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.|+|||+|.+|+++|..+++.|.+|.++.+..
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 48999999999999999999999999999874
No 428
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.16 E-value=0.011 Score=58.83 Aligned_cols=101 Identities=16% Similarity=0.211 Sum_probs=70.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
..+-+|||||.-|+-+|..|...|++++++.-.+.+--. .-...-...
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMer--------------------------------QLD~~ag~l 192 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMER--------------------------------QLDRTAGRL 192 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHH--------------------------------hhhhHHHHH
Confidence 455799999999999999999999999999876532100 000112345
Q ss_pred HHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc-eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD-SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~~d~vIlAtG~~~~p~~p 153 (412)
|++...+.++++++++..+.+-... ..-.+..++ ..+.+|.||.|+| -+|+.-
T Consensus 193 L~~~le~~Gi~~~l~~~t~ei~g~~--~~~~vr~~DG~~i~ad~VV~a~G--IrPn~e 246 (793)
T COG1251 193 LRRKLEDLGIKVLLEKNTEEIVGED--KVEGVRFADGTEIPADLVVMAVG--IRPNDE 246 (793)
T ss_pred HHHHHHhhcceeecccchhhhhcCc--ceeeEeecCCCcccceeEEEecc--cccccH
Confidence 5666777799988877666555422 222355566 6789999999999 777653
No 429
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.14 E-value=0.007 Score=57.46 Aligned_cols=32 Identities=25% Similarity=0.557 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 58999999999999999999999999999875
No 430
>PRK08013 oxidoreductase; Provisional
Probab=96.12 E-value=0.013 Score=56.21 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
..|+|||+|..|.-+|..|++.|.+|+++.+++
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV 36 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence 369999999999999999999999999999988
No 431
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.10 E-value=0.01 Score=50.87 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 177 FKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 177 ~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
..+++++|||||.+|..-+..|.+.|++|+++....
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 567899999999999999999999999999997543
No 432
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.09 E-value=0.014 Score=52.01 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=29.8
Q ss_pred ceEEeCC--eEEecCCcEecccEEEEcCCCCCCCCCccccC
Q 037065 300 VKEITKN--GARFTDGQEKEIDAIILATGYKSNVPTWLKEC 338 (412)
Q Consensus 300 v~~i~~~--~v~~~~g~~~~~D~vi~atG~~p~~~~~l~~~ 338 (412)
|.+++++ .|.+.+|++|.+|.+|.|+|..-+.. .++.+
T Consensus 114 v~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~-~IkGl 153 (446)
T KOG3851|consen 114 VKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYG-KIKGL 153 (446)
T ss_pred HHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccc-hhcCh
Confidence 5566654 58889999999999999999999883 34433
No 433
>PRK07190 hypothetical protein; Provisional
Probab=96.08 E-value=0.025 Score=55.60 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
-.|+|||+|.+|+-+|..|++.|.+|.++.+.+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 369999999999999999999999999999987
No 434
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.07 E-value=0.022 Score=54.84 Aligned_cols=32 Identities=28% Similarity=0.643 Sum_probs=30.0
Q ss_pred eEEEEcCCCCHHHHHHHHhhcC-CccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHN-AIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g-~~v~~~~r~~ 212 (412)
+|+|||+|..|+-+|..|.+.| .+|+++.|++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 6999999999999999999998 4999999987
No 435
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.05 E-value=0.028 Score=54.11 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=29.6
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.|+|||+|..|+|.|.+.++.|.++.+++-+.
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 59999999999999999999999998888766
No 436
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.02 E-value=0.0064 Score=59.57 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=33.6
Q ss_pred ccccCeEEECCChHHHHHHHHHHHc-CCCeEEEecCCCC
Q 037065 15 VLVHGPIIVGAGPSGLAVSACLSQQ-GLPSLILERSDCL 52 (412)
Q Consensus 15 ~~~~~vvIIG~G~aGl~~A~~l~~~-g~~v~vie~~~~~ 52 (412)
...||.+|||||.||+.+|.+|.+. .++|+|+|+....
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 3479999999999999999999997 5899999998543
No 437
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.02 E-value=0.02 Score=57.14 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 179 NQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 179 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
...|+|||+|.+|+-+|..|.+.|.+|+++.+++
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 3469999999999999999999999999999987
No 438
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.01 E-value=0.071 Score=51.84 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 179 NQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 179 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.-.|+|||+|+.|.-+|..|++.|.+|.++.+++
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4479999999999999999999999999999876
No 439
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=95.98 E-value=0.02 Score=52.12 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=30.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999987
No 440
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.91 E-value=0.0077 Score=49.36 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=30.0
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
+|+|||||..|.++|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999964
No 441
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.016 Score=52.16 Aligned_cols=100 Identities=20% Similarity=0.177 Sum_probs=73.6
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHHH
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAYI 97 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
-+-+|||||+.+|.||-.|+-.|+++++.=|+-.+.| + ..++.+.+
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG-----------------------F-----------Dqdmae~v 244 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG-----------------------F-----------DQDMAELV 244 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc-----------------------c-----------cHHHHHHH
Confidence 4679999999999999999999999999888643221 1 25667777
Q ss_pred HHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcc------eEEEeCEEEEeeCCCCCCCCCC
Q 037065 98 ESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQD------SEYISKWLVVATGENAEPVFPD 154 (412)
Q Consensus 98 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~------~~~~~d~vIlAtG~~~~p~~p~ 154 (412)
....+..++++......+.++..++ +.+.|...+ ..-.||.|+.|.| ..+...+
T Consensus 245 ~~~m~~~Gikf~~~~vp~~Veq~~~-g~l~v~~k~t~t~~~~~~~ydTVl~AiG--R~~~~~~ 304 (503)
T KOG4716|consen 245 AEHMEERGIKFLRKTVPERVEQIDD-GKLRVFYKNTNTGEEGEEEYDTVLWAIG--RKALTDD 304 (503)
T ss_pred HHHHHHhCCceeecccceeeeeccC-CcEEEEeecccccccccchhhhhhhhhc--cccchhh
Confidence 7778888999977766667766554 445554433 4568999999999 5444443
No 442
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=95.89 E-value=0.036 Score=53.09 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=30.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
+|+|||+|+.|.-+|..|++.|.+|.++.+.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 58999999999999999999999999999876
No 443
>PRK10015 oxidoreductase; Provisional
Probab=95.87 E-value=0.0091 Score=57.71 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=30.6
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.|+|||+|.+|.-+|..|++.|.+|.++.|.+
T Consensus 7 DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~ 38 (429)
T PRK10015 7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38 (429)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 59999999999999999999999999999887
No 444
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.87 E-value=0.067 Score=51.31 Aligned_cols=89 Identities=18% Similarity=0.114 Sum_probs=64.8
Q ss_pred EEECCChHHHHHH-HHHH----HcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 21 IIVGAGPSGLAVS-ACLS----QQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 21 vIIG~G~aGl~~A-~~l~----~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
+|++.|.-|+..+ ..+. +.|.+|++++..+.. ....++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps-----------------------------------lpG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS-----------------------------------VPGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-----------------------------------CchHHHHH
Confidence 6788888888887 4343 359999999876521 12236777
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcEEE-EEcc---eEEEeCEEEEeeCC
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFWRV-QTQD---SEYISKWLVVATGE 146 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v-~~~~---~~~~~d~vIlAtG~ 146 (412)
.+.+..++.+++++.+++|+++...+ +.... ...+ ..+.+|.||+|+|.
T Consensus 264 aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 264 ALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 88888888899999999999998765 33332 2322 56899999999994
No 445
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.82 E-value=0.011 Score=56.90 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=33.7
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 176 EFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 176 ~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
...+++|+|||+|+.|+..|..|+..|..|+++.+.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 3446899999999999999999999999999998877
No 446
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.81 E-value=0.022 Score=54.68 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
++|+|||+|..|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 689999999999999999999999999999987
No 447
>PRK08401 L-aspartate oxidase; Provisional
Probab=95.81 E-value=0.088 Score=51.54 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=30.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
..|+|||+|.+|+-.|..+++.|.+|.++.+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 369999999999999999999999999999865
No 448
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.77 E-value=0.023 Score=54.38 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhc--CCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRH--NAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~--g~~v~~~~r~~ 212 (412)
.|+|||+|.+|+-+|..|++. |.+|+++.+.+
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 599999999999999999999 99999999875
No 449
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.76 E-value=0.16 Score=51.18 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=62.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHcC-CCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQG-LPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIA 95 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g-~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
.++|+|||+|..|+.+|..+.+.+ .+++|+.+.+... + + ....++.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~------------------------~--~------~~~~~~~~ 314 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTRED------------------------M--P------AHDEEIEE 314 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCccc------------------------C--C------CCHHHHHH
Confidence 578999999999999999999888 4688888864210 0 0 01122222
Q ss_pred HHHHHHHHcCCcccccceEEEEEEcCCCCcE-----EEEE------------cc--eEEEeCEEEEeeCCCCCCC
Q 037065 96 YIESYASHFKIQPKFKQAVQTALFDHASGFW-----RVQT------------QD--SEYISKWLVVATGENAEPV 151 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-----~v~~------------~~--~~~~~d~vIlAtG~~~~p~ 151 (412)
+.+.++++++++.+..+..+++ +.. .+.. .+ .++.+|.||+|+| ..|.
T Consensus 315 -----a~~~GVki~~~~~~~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G--~~p~ 381 (564)
T PRK12771 315 -----ALREGVEINWLRTPVEIEGDEN-GATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIG--QDID 381 (564)
T ss_pred -----HHHcCCEEEecCCcEEEEcCCC-CEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcC--CCCc
Confidence 3345889888888888765432 111 1111 11 4799999999999 5554
No 450
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.74 E-value=0.021 Score=54.44 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
..|+|||+|..|+-+|..|++.|.+|+++.+.+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 369999999999999999999999999999987
No 451
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.028 Score=47.56 Aligned_cols=109 Identities=18% Similarity=0.157 Sum_probs=64.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCCccccccccCC-----Chhh-HHHHHHHhcchHHHHHHHHHHHHHh
Q 037065 179 NQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSVHVLPREIFGF-----STFG-IAMALLRWFPLRLVDKILLLMANIT 252 (412)
Q Consensus 179 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
..+|+|||+|+.|.-.|..+++...+-.++..-- .....-|. ++++ +.-+..+...+.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~---~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~----------- 73 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM---ANGIAPGGQLTTTTDVENFPGFPDGITGPELM----------- 73 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeee---ccCcCCCceeeeeeccccCCCCCcccccHHHH-----------
Confidence 4579999999999999999998876666655311 10000000 0001 00011122222333
Q ss_pred hcCccccCCCCCCCCCccccccCCCcccccchhhhhhccCCEEEEcC-ceEEeCCe---EEecCCcEecccEEEEcCCCC
Q 037065 253 LGNTDQLGLRRPKTGPIELKNITGKTPVLDVGALSQIKSGKIKVVGG-VKEITKNG---ARFTDGQEKEIDAIILATGYK 328 (412)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-v~~i~~~~---v~~~~g~~~~~D~vi~atG~~ 328 (412)
+...++..+-+.++.+. |.+++-.+ ...+|.+.+.+|.||+|||-.
T Consensus 74 ------------------------------d~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAs 123 (322)
T KOG0404|consen 74 ------------------------------DKMRKQSERFGTEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGAS 123 (322)
T ss_pred ------------------------------HHHHHHHHhhcceeeeeehhhccccCCCeEEEecCCceeeeeEEEecccc
Confidence 33345555667777766 66665432 334577789999999999998
Q ss_pred CCC
Q 037065 329 SNV 331 (412)
Q Consensus 329 p~~ 331 (412)
...
T Consensus 124 AkR 126 (322)
T KOG0404|consen 124 AKR 126 (322)
T ss_pred eee
Confidence 874
No 452
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=95.65 E-value=0.058 Score=51.48 Aligned_cols=31 Identities=32% Similarity=0.421 Sum_probs=29.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARN 211 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~ 211 (412)
.|+|||+|++|.-+|..|++.|.+|.++.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4899999999999999999999999999987
No 453
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.62 E-value=0.031 Score=57.98 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=34.9
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 175 SEFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 175 ~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
....+++|.|||+|++|+-.|..|.+.|..|++..|.+
T Consensus 1781 ~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred ccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 34468999999999999999999999999999999988
No 454
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.61 E-value=0.029 Score=48.40 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=31.4
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEe
Q 037065 176 EFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVAR 210 (412)
Q Consensus 176 ~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r 210 (412)
...+++|+|||||..|..=+..|.+.|++|+++..
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 34578999999999999999999999999999974
No 455
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.57 E-value=0.05 Score=47.29 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.6
Q ss_pred CeEEecCCcEecccEEEEcCCCCCCC
Q 037065 306 NGARFTDGQEKEIDAIILATGYKSNV 331 (412)
Q Consensus 306 ~~v~~~~g~~~~~D~vi~atG~~p~~ 331 (412)
..+.+.+|.++.++-+++|+|++|..
T Consensus 81 hci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 81 HCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred ceEEecCCceeeEEEEEEecCCCcce
Confidence 45889999999999999999999974
No 456
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=95.56 E-value=0.014 Score=55.75 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=31.0
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNSV 213 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~~ 213 (412)
.|+|||+|++|.-+|..|++.|.+|.++.+++.
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~ 37 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE 37 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCC
Confidence 599999999999999999999999999999883
No 457
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.56 E-value=0.02 Score=54.80 Aligned_cols=44 Identities=27% Similarity=0.433 Sum_probs=35.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRT 60 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~ 60 (412)
.+||+|+|.|..-+.+|..|++.|.+|+.+|+++.-||.|....
T Consensus 4 ~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~ 47 (438)
T PF00996_consen 4 EYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLN 47 (438)
T ss_dssp BESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-
T ss_pred cceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhccc
Confidence 79999999999999999999999999999999999999887643
No 458
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=95.47 E-value=0.008 Score=58.09 Aligned_cols=31 Identities=23% Similarity=0.481 Sum_probs=26.2
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 182 VLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 182 v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
|+|||||..|+-.|..+++.|.+|.++.+.+
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 8999999999999999999999999999988
No 459
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.46 E-value=0.075 Score=50.25 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=29.6
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.|+|||||..|+|.|.+.++.|++.++++.+-
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 69999999999999999999999998888765
No 460
>PRK06996 hypothetical protein; Provisional
Probab=95.45 E-value=0.02 Score=54.82 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=29.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcC----CccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHN----AIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g----~~v~~~~r~~ 212 (412)
..|+|||+|..|.-+|..|++.| .+|+++.+.+
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 46999999999999999999986 4699999876
No 461
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.42 E-value=0.04 Score=51.31 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcE-EEEEcceEEEeCEEEEeeCCCCCCC
Q 037065 86 KYPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFW-RVQTQDSEYISKWLVVATGENAEPV 151 (412)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~~~~~~~d~vIlAtG~~~~p~ 151 (412)
+......+...+.+.+.+.+++++.+++|+.+...+ +.+ .|.+.++++.||.||+|+|.++...
T Consensus 132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIVTPSGDVQADQVVLAAGAWAGEL 196 (337)
T ss_pred ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEEcCCCEEECCEEEEcCChhhhhc
Confidence 345677888888888999999999999999998765 443 4666678899999999999866544
No 462
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.39 E-value=0.019 Score=48.24 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=28.3
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
+|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999975
No 463
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=95.33 E-value=0.046 Score=52.23 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=31.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.+|+|||+|..|+-+|..|++.|.+|+++.+++
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 469999999999999999999999999999988
No 464
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.32 E-value=0.26 Score=45.89 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=35.1
Q ss_pred CCcccccceEEEEEEcCCCCcEEEEEcc------eEEEeCEEEEeeCCCCCCCCCC
Q 037065 105 KIQPKFKQAVQTALFDHASGFWRVQTQD------SEYISKWLVVATGENAEPVFPD 154 (412)
Q Consensus 105 ~~~~~~~~~v~~i~~~~~~~~~~v~~~~------~~~~~d~vIlAtG~~~~p~~p~ 154 (412)
.+.+...++|.+++..++ +.+.+.+.. .++++|.||+||| -+...|.
T Consensus 292 ~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~~~~~t~~~D~vIlATG--Y~~~~P~ 344 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGD-GRYRLTLRHHETGELETVETDAVILATG--YRRAVPS 344 (436)
T ss_pred CeeeccccceeeeecCCC-ceEEEEEeeccCCCceEEEeeEEEEecc--cccCCch
Confidence 455677889999998886 446665543 7899999999999 4555553
No 465
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.31 E-value=0.043 Score=52.48 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=29.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhhc---CCccEEEEeC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRH---NAIPHMVARN 211 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~---g~~v~~~~r~ 211 (412)
-.|+|||+|.+|.-+|..|++. |.+|+++.+.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 3699999999999999999998 9999999995
No 466
>PRK06126 hypothetical protein; Provisional
Probab=95.28 E-value=0.07 Score=53.47 Aligned_cols=34 Identities=32% Similarity=0.575 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 179 NQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 179 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
...|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3579999999999999999999999999999887
No 467
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.27 E-value=0.041 Score=52.39 Aligned_cols=63 Identities=14% Similarity=0.213 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccceEEEEEEcCCCCcEEEEEcce-EEEeCEEEEeeCCCCCCCC
Q 037065 87 YPTKRQFIAYIESYASHFKIQPKFKQAVQTALFDHASGFWRVQTQDS-EYISKWLVVATGENAEPVF 152 (412)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~-~~~~d~vIlAtG~~~~p~~ 152 (412)
......+...+.+.+++ +++++++++|++++.++ +.|.+++.++ ++.+|+||+|+|.++....
T Consensus 131 ~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~~~v~t~~g~~~~a~~vV~a~G~~~~~l~ 194 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG--EGWQLLDANGEVIAASVVVLANGAQAGQLA 194 (381)
T ss_pred ccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--CeEEEEeCCCCEEEcCEEEEcCCccccccc
Confidence 34567777888787888 99999999999998765 5688887775 4899999999998765443
No 468
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.25 E-value=0.035 Score=52.51 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 178 KNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 178 ~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
..++++|||||.+|+..|..|++.|-+|+++.+.+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 35789999999999999999999999999999988
No 469
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.24 E-value=0.16 Score=50.22 Aligned_cols=33 Identities=15% Similarity=0.461 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
-.|+|||+|..|+-.|..+++.|.+|.++.+.+
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~ 94 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP 94 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 359999999999999999999999999999877
No 470
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.21 E-value=0.07 Score=53.99 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 177 FKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 177 ~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
....+|+|||+|..|+-+|..|.+.|.+|+++.|.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 445689999999999999999999999999999976
No 471
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.21 E-value=0.017 Score=39.66 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=27.1
Q ss_pred EEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 184 VIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 184 vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
|||+|.+|+-.|..|++.+.+|+++.+++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 79999999999999999999999999988
No 472
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=95.19 E-value=0.063 Score=53.81 Aligned_cols=34 Identities=21% Similarity=0.513 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 179 NQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 179 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
...|+|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4579999999999999999999999999999987
No 473
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.18 E-value=0.036 Score=53.96 Aligned_cols=50 Identities=26% Similarity=0.388 Sum_probs=35.0
Q ss_pred cchhhhhhccCCEEEEcC-ceEEe--CC----eEEecCCcEecccEEEEcCCCCCCC
Q 037065 282 DVGALSQIKSGKIKVVGG-VKEIT--KN----GARFTDGQEKEIDAIILATGYKSNV 331 (412)
Q Consensus 282 ~~~~~~~~~~~~v~v~~~-v~~i~--~~----~v~~~~g~~~~~D~vi~atG~~p~~ 331 (412)
+..+.+...+.|++++.+ |..+. ++ .|.+.+|+++.+|++|=|+|++...
T Consensus 157 d~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 157 DQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CC
T ss_pred HHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchh
Confidence 344566667789999877 65543 33 3777899999999999999997754
No 474
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.15 E-value=0.044 Score=46.91 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEe
Q 037065 176 EFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVAR 210 (412)
Q Consensus 176 ~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r 210 (412)
...+++++|||+|..|...+..|.+.|.+|+++.+
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 45688999999999999999999999999999964
No 475
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.13 E-value=0.028 Score=49.05 Aligned_cols=32 Identities=34% Similarity=0.604 Sum_probs=30.7
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
+++|||+|..|.+.|..|.+.|++|+++|+.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 69999999999999999999999999999976
No 476
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.13 E-value=0.033 Score=47.80 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=31.4
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
.++|+|||||..|..-+..|.+.|.+|+|+++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4689999999999999999999999999999854
No 477
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=95.10 E-value=0.048 Score=52.96 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=29.3
Q ss_pred eEEEEcCCCCHHHHHHHHhh----cCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCR----HNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~----~g~~v~~~~r~~ 212 (412)
.|+|||+|.+|+-+|..|++ .|.+|+++.+++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 48999999999999999998 799999999954
No 478
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.09 E-value=0.021 Score=46.40 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=29.1
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 182 VLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 182 v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
|+|+|+|.+|.-+|..|++.|.+|+++.|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999876
No 479
>PRK11445 putative oxidoreductase; Provisional
Probab=95.06 E-value=0.036 Score=52.06 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=29.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.|+|||+|.+|.-+|..|++. .+|+++.+++
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 589999999999999999998 8999999987
No 480
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.98 E-value=0.035 Score=45.40 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=30.3
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERS 49 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~ 49 (412)
.++|+|||||..|..-+..|.+.|.+|+||++.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 578999999999999999999999999999653
No 481
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=94.95 E-value=0.064 Score=51.23 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=31.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.+|+|||+|..|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 469999999999999999999999999999988
No 482
>PRK07538 hypothetical protein; Provisional
Probab=94.94 E-value=0.09 Score=50.65 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=30.6
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
+|+|||+|..|+-+|..|++.|.+|+++.+++
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 58999999999999999999999999999987
No 483
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.91 E-value=0.035 Score=50.41 Aligned_cols=34 Identities=24% Similarity=0.510 Sum_probs=31.9
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
+.+|.|||+|..|...|..+++.|++|+++|+.+
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4589999999999999999999999999999976
No 484
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.85 E-value=0.018 Score=43.43 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=31.0
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
.++|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 5789999999999999999999999999999973
No 485
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.80 E-value=0.027 Score=47.49 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=27.3
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCC
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDC 51 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~ 51 (412)
+|.|||.|+.|+.+|..|++.|++|+.+|.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 699999999999999999999999999999864
No 486
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.76 E-value=0.032 Score=54.53 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=30.6
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCeEEEecCCC
Q 037065 19 GPIIVGAGPSGLAVSACLSQQGLPSLILERSDC 51 (412)
Q Consensus 19 ~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~ 51 (412)
+|+|||.|.+|+++|..|++.|++|+++|++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 589999999999999999999999999998753
No 487
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.59 Score=42.64 Aligned_cols=96 Identities=16% Similarity=0.064 Sum_probs=59.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCCCCCcccCCCCCCCeeeecCCccccCCCCCCCCCCCCCCCHHHHHHH
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSDCLASLWKHRTYDRLKLHLPKQFCELPLFGFPENFPKYPTKRQFIAY 96 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
-+||+|||||-+|+.+|+-|+-.=..|+++|-.+.+ ..+ .-
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL------------------------------------kAD---~V 394 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL------------------------------------KAD---AV 394 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchhh------------------------------------hhH---HH
Confidence 589999999999999999998655588988876532 112 22
Q ss_pred HHHHH-HHcCCcccccceEEEEEEcCCC-Cc--EEEEEcc--eEEEeCEEEEeeCCCCCCCCC
Q 037065 97 IESYA-SHFKIQPKFKQAVQTALFDHAS-GF--WRVQTQD--SEYISKWLVVATGENAEPVFP 153 (412)
Q Consensus 97 ~~~~~-~~~~~~~~~~~~v~~i~~~~~~-~~--~~v~~~~--~~~~~d~vIlAtG~~~~p~~p 153 (412)
+++.. +-.++++..+..-+.|.-+++. .. |+.+..+ ..+.-+-|.+-.| ..|+..
T Consensus 395 Lq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIG--L~PNT~ 455 (520)
T COG3634 395 LQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIG--LLPNTE 455 (520)
T ss_pred HHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEe--cccChh
Confidence 33333 3347777777766666655321 01 1112222 4556667777778 555544
No 488
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.60 E-value=0.27 Score=46.89 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=27.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcC---CccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHN---AIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g---~~v~~~~r~~ 212 (412)
.+|+|||+|.+|+.+|..|.+.- ..++++..++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~ 37 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRP 37 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccc
Confidence 47999999999999999999862 2388888777
No 489
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.60 E-value=0.025 Score=42.58 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=31.5
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 176 EFKNQKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 176 ~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
...+++++|||+|..|..-+..|.+.|++|+++....
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 3568899999999999999999999999999998663
No 490
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=94.59 E-value=0.15 Score=44.79 Aligned_cols=32 Identities=13% Similarity=0.330 Sum_probs=30.4
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.|+|||+|..|+-.|..|.+.|.+|+++.++.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 58999999999999999999999999999877
No 491
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.54 E-value=0.053 Score=46.38 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=30.7
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERS 49 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~ 49 (412)
.++|+|||||-.|...+..|.+.|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 578999999999999999999999999999864
No 492
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.46 E-value=0.05 Score=50.06 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=31.0
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
.+|.|||+|..|...|..|+++|++|+++|+.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 369999999999999999999999999999975
No 493
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.45 E-value=0.037 Score=52.57 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 180 QKVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 180 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
++|+|||+|..|+++|..|++.|.+|+++.+++
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 579999999999999999999999999999877
No 494
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=94.33 E-value=0.26 Score=48.61 Aligned_cols=31 Identities=26% Similarity=0.541 Sum_probs=28.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhcCCccEEEEeCC
Q 037065 181 KVLVIGCGNSGMEVSLDLCRHNAIPHMVARNS 212 (412)
Q Consensus 181 ~v~vvG~G~~~~e~a~~l~~~g~~v~~~~r~~ 212 (412)
.|+|||+|.+|+-.|..+++.|. |.++.+.+
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~ 34 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQGR-VIVLSKAP 34 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCCC-EEEEEccC
Confidence 59999999999999999999997 99998876
No 495
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.32 E-value=0.056 Score=42.98 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=30.6
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCC-CeEEEecCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGL-PSLILERSD 50 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~~ 50 (412)
..+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4589999999999999999999998 799999964
No 496
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.30 E-value=0.067 Score=43.38 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=29.0
Q ss_pred eEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 20 PIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 20 vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
|+|+|+|..|+..|..|++.|.+|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999953
No 497
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.29 E-value=0.063 Score=48.88 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=31.0
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
.+|+|||+|..|...|..|++.|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 469999999999999999999999999999975
No 498
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.11 E-value=0.099 Score=41.56 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=31.7
Q ss_pred cccCeEEECCChHHHHHHHHHHHcCCC-eEEEecCC
Q 037065 16 LVHGPIIVGAGPSGLAVSACLSQQGLP-SLILERSD 50 (412)
Q Consensus 16 ~~~~vvIIG~G~aGl~~A~~l~~~g~~-v~vie~~~ 50 (412)
..++++|||+|-+|-.++..|.+.|.+ |+|+.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 367899999999999999999999986 99999853
No 499
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.10 E-value=0.075 Score=49.06 Aligned_cols=33 Identities=33% Similarity=0.366 Sum_probs=30.7
Q ss_pred cCeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 18 HGPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 18 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
.+|+|||+|..|...|..|++.|.+|+++.++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 369999999999999999999999999999864
No 500
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.09 E-value=0.07 Score=48.55 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=31.4
Q ss_pred ccCeEEECCChHHHHHHHHHHHcCCCeEEEecCC
Q 037065 17 VHGPIIVGAGPSGLAVSACLSQQGLPSLILERSD 50 (412)
Q Consensus 17 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~ 50 (412)
..+|+|||+|..|...|..+++.|++|+++|++.
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 3579999999999999999999999999999865
Done!