BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037071
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S7Y1|BH030_ARATH Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1
SV=1
Length = 368
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 12/144 (8%)
Query: 6 VDDVKELDKNATEATEGFLRPTDIDEVKV---EQQEDGLDGAPYSIKASLCCNYKPGLLS 62
+ VKEL + + +E L PT+ DE+ V E++E G DG + IKASLCC + LL
Sbjct: 216 IQHVKELKRETSVISETNLVPTESDELTVAFTEEEETG-DGR-FVIKASLCCEDRSDLLP 273
Query: 63 DLRRVLEALHLSIVKAEIATLEGSMKNI-FVMASCKELNFENTEVCQSLVSSVHQAIRSV 121
D+ + L+A+ L +KAEI T+ G +KN+ FV E C + ++ +A+++V
Sbjct: 274 DMIKTLKAMRLKTLKAEITTVGGRVKNVLFVTGEESSGEEVEEEYC---IGTIEEALKAV 330
Query: 122 LDKFSATEEFLLGAKLSNKRRRVS 145
++K + E G + KR+R+S
Sbjct: 331 MEKSNVEESSSSG---NAKRQRMS 351
>sp|Q9LS08|BH032_ARATH Transcription factor AIG1 OS=Arabidopsis thaliana GN=BHLH32 PE=1
SV=1
Length = 344
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 6 VDDVKELDKNATEATEGFLRPTDIDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLR 65
+ +KEL + ++ T+ + PT+ D++ V+ + +G I+AS CC + L+ D+
Sbjct: 174 IQHMKELKRQTSQITDTYQVPTECDDLTVDSSYNDEEGN-LVIRASFCCQDRTDLMHDVI 232
Query: 66 RVLEALHLSIVKAEIATLEGSMKNIFVMA---------SCKELNFENTEV--------CQ 108
L++L L +KAEIAT+ G +KNI ++ NF+ +V
Sbjct: 233 NALKSLRLRTLKAEIATVGGRVKNILFLSREYDDEEDHDSYRRNFDGDDVEDYDEERMMN 292
Query: 109 SLVSSVHQAIRSVLDK 124
+ VSS+ +A+++V++K
Sbjct: 293 NRVSSIEEALKAVIEK 308
>sp|O80674|BH106_ARATH Transcription factor bHLH106 OS=Arabidopsis thaliana GN=BHLH106
PE=2 SV=1
Length = 253
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 70/128 (54%), Gaps = 14/128 (10%)
Query: 4 KRVDDVKELDKNATEATEG--FLRPTDIDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLL 61
K V V+EL + E ++ L P++ DE+ V D + KASLCC + LL
Sbjct: 107 KVVQRVRELKQQTLETSDSDQTLLPSETDEISVLHFGDYSNDGHIIFKASLCCEDRSDLL 166
Query: 62 SDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVH---QAI 118
DL +L++L++ ++AE+ T+ G +++ V+A+ KE++ V SVH A+
Sbjct: 167 PDLMEILKSLNMKTLRAEMVTIGGRTRSVLVVAADKEMHG---------VESVHFLQNAL 217
Query: 119 RSVLDKFS 126
+S+L++ S
Sbjct: 218 KSLLERSS 225
>sp|Q9LET0|BH107_ARATH Putative transcription factor bHLH107 OS=Arabidopsis thaliana
GN=BHLH107 PE=2 SV=1
Length = 230
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 9/127 (7%)
Query: 4 KRVDDVKELDKNATEATEGFLRPTDIDEVKVEQQEDGLDGAPYSI--KASLCCNYKPGLL 61
K V VKEL + E T+ + P++ DE+ V ED G I K S CC +P LL
Sbjct: 85 KVVQRVKELKQQTLEITDETI-PSETDEISVLNIEDCSRGDDRRIIFKVSFCCEDRPELL 143
Query: 62 SDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSV 121
DL L++L + + A++ T+ G +N+ V+A+ KE + + V+ + A++S+
Sbjct: 144 KDLMETLKSLQMETLFADMTTVGGRTRNVLVVAADKEHHGVQS------VNFLQNALKSL 197
Query: 122 LDKFSAT 128
L++ S +
Sbjct: 198 LERSSKS 204
>sp|Q9XEF0|BH051_ARATH Transcription factor bHLH51 OS=Arabidopsis thaliana GN=BHLH51 PE=2
SV=1
Length = 254
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 6 VDDVKELDKNATEATEGFLRPTDIDEVKVEQQE-DGLDGAPYSI--KASLCCNYKPGLLS 62
++ VKEL + A E+ PT+ DEV V+ + + +I KAS CC +P +S
Sbjct: 105 IEQVKELKQKAAESPIFQDLPTEADEVTVQPETISDFESNTNTIIFKASFCCEDQPEAIS 164
Query: 63 DLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVL 122
++ RVL L L ++AEI ++ G M+ F++ K+ N T + ++ Q++ S L
Sbjct: 165 EIIRVLTKLQLETIQAEIISVGGRMRINFIL---KDSNCNETTNIAASAKALKQSLCSAL 221
Query: 123 DKF 125
++
Sbjct: 222 NRI 224
>sp|Q88MI2|GLND_PSEPK [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
KT2440) GN=glnD PE=3 SV=1
Length = 900
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 35/64 (54%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQ 116
+PGLL+ L R+ LS+ A+IATL ++++F + + ++C L ++ Q
Sbjct: 824 RPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQEAIVQ 883
Query: 117 AIRS 120
+++
Sbjct: 884 QLQA 887
>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
GB-1) GN=glnD PE=3 SV=1
Length = 900
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 35/64 (54%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQ 116
+PGLL+ L R+ LS+ A+IATL ++++F + + ++C L ++ Q
Sbjct: 824 RPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQEAIVQ 883
Query: 117 AIRS 120
+++
Sbjct: 884 QLQA 887
>sp|A5W852|GLND_PSEP1 [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain F1
/ ATCC 700007) GN=glnD PE=3 SV=1
Length = 900
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 35/64 (54%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQ 116
+PGLL+ L R+ LS+ A+IATL ++++F + + ++C L ++ Q
Sbjct: 824 RPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQEAIVQ 883
Query: 117 AIRS 120
+++
Sbjct: 884 QLQA 887
>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
W619) GN=glnD PE=3 SV=1
Length = 900
Score = 35.4 bits (80), Expect = 0.27, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 35/64 (54%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQ 116
+PGLL+ + R+ LS+ A+IATL ++++F + + ++C L ++ Q
Sbjct: 824 RPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQEAIVQ 883
Query: 117 AIRS 120
+++
Sbjct: 884 QLQA 887
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 34.7 bits (78), Expect = 0.47, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 35/64 (54%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQ 116
+PGLL+ + R+ +S+ A+IATL ++++F + + ++C L ++ Q
Sbjct: 824 RPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQEAIIQ 883
Query: 117 AIRS 120
+++
Sbjct: 884 QLQA 887
>sp|A4XWU3|GLND_PSEMY [Protein-PII] uridylyltransferase OS=Pseudomonas mendocina (strain
ymp) GN=glnD PE=3 SV=1
Length = 899
Score = 33.9 bits (76), Expect = 0.80, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSV 114
+PGLL+ + R+ LS+ A+IATL ++++F + + E+C L ++
Sbjct: 824 RPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTDANNQPLSDPELCARLQETI 881
>sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1
SV=1
Length = 450
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 47 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKE 98
++ + C +PGLL R L+ L L + +A I+ G ++F C+E
Sbjct: 376 AVNIHMFCGRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCQE 427
>sp|C3K5E4|GLND_PSEFS [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain SBW25) GN=glnD PE=3 SV=1
Length = 900
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQ 116
+PGLL+ + + LS+ A+IATL ++++F + + E+C+ L ++ Q
Sbjct: 824 RPGLLARIGGIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPELCRRLQDAIVQ 883
Query: 117 AI 118
+
Sbjct: 884 QL 885
>sp|Q4ZWT0|GLND_PSEU2 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=glnD PE=3 SV=1
Length = 898
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 32/58 (55%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSV 114
+PGLL+ + ++ LS+ A+IATL ++++F + + ++C+ L ++
Sbjct: 823 RPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLSDPQLCRQLQDAI 880
>sp|Q886P5|GLND_PSESM [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=glnD PE=3 SV=1
Length = 898
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSV 114
+PGLL+ + ++ LS+ A+IATL ++++F + + ++C L ++
Sbjct: 823 RPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNQPLSDPQLCSQLQEAI 880
>sp|Q46LV3|SYT_PROMT Threonine--tRNA ligase OS=Prochlorococcus marinus (strain NATL2A)
GN=thrS PE=3 SV=1
Length = 641
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 103 NTEVCQSLVSSVHQAIRSVLDKFSATEEFLLGAKLSNKR--RRVSLFDSSLSSSSDYLWH 160
N E+ Q + + ++ + + + S EE K +++ ++ SLF S + WH
Sbjct: 210 NNEMLQRIYGTAWKSSKELKEYLSRIEE---AEKRDHRKLGKKYSLFHSQEEAPGMVFWH 266
Query: 161 PR-ITISRLRPSLVR-TITAVAQRRL--PTMGGSSVWEK---WEK 198
P+ TI R+ +R TIT + + P + S+WEK W+K
Sbjct: 267 PKGWTIYRILEDFIRETITKYDYQEVKSPQVVDRSLWEKSGHWDK 311
>sp|Q48F57|GLND_PSE14 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=glnD PE=3 SV=1
Length = 898
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSV 114
+PGLL+ + ++ LS+ A+IATL ++++F + + ++C L ++
Sbjct: 823 RPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLSDPQLCSQLQDAI 880
>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=glnD PE=3 SV=1
Length = 875
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCK 97
K GLL+D+ V L+LSI A+I T+ ++ F++ + K
Sbjct: 814 KAGLLADVSLVFSELNLSIQNAKITTIGEKAQDFFILTNAK 854
>sp|Q5LWE5|GLND_RUEPO [Protein-PII] uridylyltransferase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=glnD PE=3 SV=1
Length = 908
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQ 116
+PGLL DL R L A ++ I A IAT + + F + L + + ++L + + +
Sbjct: 837 RPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYVKDMFGLKYHSEAKQRTLETKLRK 896
Query: 117 AIRSVLDKFSAT 128
AI ++ +A+
Sbjct: 897 AITEGAERAAAS 908
>sp|P36223|GLND_AZOVI [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii GN=glnD
PE=3 SV=1
Length = 899
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSL 110
+PGLL+ + ++ LS+ A+IATL ++++F + + E+C L
Sbjct: 824 RPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTDAHNQPLSDPELCARL 877
>sp|C1DSU8|GLND_AZOVD [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii (strain
DJ / ATCC BAA-1303) GN=glnD PE=3 SV=1
Length = 899
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSL 110
+PGLL+ + ++ LS+ A+IATL ++++F + + E+C L
Sbjct: 824 RPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTDAHNQPLSDPELCARL 877
>sp|Q4KHH8|GLND_PSEF5 [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=glnD PE=3 SV=1
Length = 900
Score = 32.0 bits (71), Expect = 3.1, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSV 114
+PGLL+ + ++ LS+ A+IATL ++++F + + ++C L ++
Sbjct: 824 RPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDAHNQPLSDPQLCSRLQDAI 881
>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1
Length = 494
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 47 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKE 98
++ + C +PGLL + L+ L L + +A I+ G ++F C+E
Sbjct: 420 AVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQCQE 471
>sp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana
GN=AMS PE=1 SV=2
Length = 571
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 41 LDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIF 91
LDG + +K + C YKPG + L L++L L + A + N+F
Sbjct: 435 LDGREFFVK--VICEYKPGGFTRLMEALDSLGLEVTNANTTRYLSLVSNVF 483
>sp|Q9LMH5|PPR42_ARATH Putative pentatricopeptide repeat-containing protein At1g13800
OS=Arabidopsis thaliana GN=At1g13800 PE=3 SV=1
Length = 883
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 42 DGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEI----ATLEGSMKNIFVMAS-- 95
D APY+ + CC K G L + + + + + S VK ++ A + G +N FV+ +
Sbjct: 795 DAAPYTALIACCC--KMGYLKEAKMIFDRMIESGVKPDVVPYTALIAGCCRNGFVLKAVK 852
Query: 96 -CKELNFENTEVCQSLVSSVHQA 117
KE+ + + ++ +S+VH A
Sbjct: 853 LVKEMLEKGIKPTKASLSAVHYA 875
>sp|Q9Z9H0|GLND_PSEAE [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=glnD
PE=3 SV=2
Length = 900
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 33/58 (56%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSV 114
+PGLL+ + + LS+ A+IATL ++++F + + + ++C+ L +++
Sbjct: 824 RPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARNQPLADPDLCKRLQAAL 881
>sp|Q02RD0|GLND_PSEAB [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=glnD PE=3 SV=1
Length = 900
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 33/58 (56%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSV 114
+PGLL+ + + LS+ A+IATL ++++F + + + ++C+ L +++
Sbjct: 824 RPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARNQPLADPDLCKRLQAAL 881
>sp|A6V1D0|GLND_PSEA7 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
PA7) GN=glnD PE=3 SV=1
Length = 900
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 33/58 (56%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSV 114
+PGLL+ + + LS+ A+IATL ++++F + + + ++C+ L +++
Sbjct: 824 RPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARNQPLADPDLCKRLQAAL 881
>sp|B7V7F5|GLND_PSEA8 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
LESB58) GN=glnD PE=3 SV=1
Length = 900
Score = 31.2 bits (69), Expect = 5.4, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 33/58 (56%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSV 114
+PGLL+ + + LS+ A+IATL ++++F + + + ++C+ L +++
Sbjct: 824 RPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARNQPLADPDLCKRLQAAL 881
>sp|Q5H1D3|GLND_XANOR [Protein-PII] uridylyltransferase OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=glnD PE=3 SV=2
Length = 869
Score = 31.2 bits (69), Expect = 5.9, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQ 108
+ SL +PGLL+D+ VL HL + A IAT ++ F + E +
Sbjct: 798 RISLVAPDRPGLLADVAHVLRVQHLRVHDARIATFGERAEDQFQITD---------EHDR 848
Query: 109 SLVSSVHQAIRSVL 122
L S QA+R L
Sbjct: 849 PLSESARQALRDAL 862
>sp|Q2P497|GLND_XANOM [Protein-PII] uridylyltransferase OS=Xanthomonas oryzae pv. oryzae
(strain MAFF 311018) GN=glnD PE=3 SV=1
Length = 869
Score = 31.2 bits (69), Expect = 5.9, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQ 108
+ SL +PGLL+D+ VL HL + A IAT ++ F + E +
Sbjct: 798 RISLVAPDRPGLLADVAHVLRVQHLRVHDARIATFGERAEDQFQITD---------EHDR 848
Query: 109 SLVSSVHQAIRSVL 122
L S QA+R L
Sbjct: 849 PLSESARQALRDAL 862
>sp|Q3BVJ6|GLND_XANC5 [Protein-PII] uridylyltransferase OS=Xanthomonas campestris pv.
vesicatoria (strain 85-10) GN=glnD PE=3 SV=1
Length = 869
Score = 30.8 bits (68), Expect = 6.5, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQ 108
+ SL +PGLL+D+ VL HL + A IAT ++ F + E +
Sbjct: 798 RISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITD---------EHDR 848
Query: 109 SLVSSVHQAIRSVL 122
L S QA+R L
Sbjct: 849 PLSESARQALRDAL 862
>sp|Q8PMJ8|GLND_XANAC [Protein-PII] uridylyltransferase OS=Xanthomonas axonopodis pv.
citri (strain 306) GN=glnD PE=3 SV=1
Length = 869
Score = 30.8 bits (68), Expect = 6.5, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQ 108
+ SL +PGLL+D+ VL HL + A IAT ++ F + E +
Sbjct: 798 RISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITD---------EHDR 848
Query: 109 SLVSSVHQAIRSVL 122
L S QA+R L
Sbjct: 849 PLSESARQALRDAL 862
>sp|B1JUF2|GLND_BURCC [Protein-PII] uridylyltransferase OS=Burkholderia cenocepacia
(strain MC0-3) GN=glnD PE=3 SV=1
Length = 858
Score = 30.8 bits (68), Expect = 6.9, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 51 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMA 94
S+ N +PGLL + RVL + + A I TL +++IF++A
Sbjct: 792 SVSANDRPGLLYSIARVLAEHRIGVHAARINTLGERVEDIFLLA 835
>sp|Q1BHI4|GLND_BURCA [Protein-PII] uridylyltransferase OS=Burkholderia cenocepacia
(strain AU 1054) GN=glnD PE=3 SV=1
Length = 858
Score = 30.8 bits (68), Expect = 6.9, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 51 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMA 94
S+ N +PGLL + RVL + + A I TL +++IF++A
Sbjct: 792 SVSANDRPGLLYSIARVLAEHRIGVHAARINTLGERVEDIFLLA 835
>sp|Q39F41|GLND_BURS3 [Protein-PII] uridylyltransferase OS=Burkholderia sp. (strain 383)
GN=glnD PE=3 SV=1
Length = 858
Score = 30.8 bits (68), Expect = 7.0, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 51 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMA 94
S+ N +PGLL + RVL + + A I TL +++IF++A
Sbjct: 792 SVSANDRPGLLYSIARVLAEHRIGVHAARINTLGERVEDIFLLA 835
>sp|Q86V87|F16B2_HUMAN Protein FAM160B2 OS=Homo sapiens GN=FAM160B2 PE=2 SV=2
Length = 743
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 43 GAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFE 102
A Y +++S CC P ++ L ++ ++ + + A+IATLEG + A E +F
Sbjct: 279 AATYLVQSSACC---PAIVRHLCQLYRSMPVFLDPADIATLEG-ISWRLPSAPSDEASFP 334
Query: 103 NTEV----------CQSLVSSVHQAIRSVLDKFSATEEFL 132
E C L++ H + L K A F+
Sbjct: 335 GKEALAAFLGWFDYCDHLITEAHTVVADALAKAVAENFFV 374
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 30.4 bits (67), Expect = 8.1, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQ 116
+PGLL DL R L A ++ I A IAT + + F + L ++L + Q
Sbjct: 860 RPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYVKDMFGLKLHQKNRQETLEKKLRQ 919
Query: 117 AI 118
AI
Sbjct: 920 AI 921
>sp|Q5ZUS2|GLND_LEGPH [Protein-PII] uridylyltransferase OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=glnD PE=3 SV=1
Length = 861
Score = 30.4 bits (67), Expect = 8.1, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 42 DGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMAS 95
D + + L N +PGLL+ + RV L++ + A+IAT ++++F +++
Sbjct: 781 DNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMFYISN 834
>sp|Q5WVX6|GLND_LEGPL [Protein-PII] uridylyltransferase OS=Legionella pneumophila (strain
Lens) GN=glnD PE=3 SV=1
Length = 861
Score = 30.4 bits (67), Expect = 8.6, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 42 DGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMAS 95
D + + L N +PGLL+ + RV L++ + A+IAT ++++F +++
Sbjct: 781 DNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMFYISN 834
>sp|A5ICM0|GLND_LEGPC [Protein-PII] uridylyltransferase OS=Legionella pneumophila (strain
Corby) GN=glnD PE=3 SV=1
Length = 861
Score = 30.4 bits (67), Expect = 8.6, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 42 DGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMAS 95
D + + L N +PGLL+ + RV L++ + A+IAT ++++F +++
Sbjct: 781 DNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMFYISN 834
>sp|Q5X4J1|GLND_LEGPA [Protein-PII] uridylyltransferase OS=Legionella pneumophila (strain
Paris) GN=glnD PE=3 SV=1
Length = 861
Score = 30.4 bits (67), Expect = 8.6, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 42 DGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMAS 95
D + + L N +PGLL+ + RV L++ + A+IAT ++++F +++
Sbjct: 781 DNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMFYISN 834
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,228,478
Number of Sequences: 539616
Number of extensions: 2508247
Number of successful extensions: 7479
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 7440
Number of HSP's gapped (non-prelim): 56
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)