Query 037071
Match_columns 208
No_of_seqs 113 out of 228
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 08:21:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04897 ACT_ACR_3 ACT domain-c 99.8 2.2E-19 4.8E-24 132.9 10.3 71 50-124 4-74 (75)
2 cd04895 ACT_ACR_1 ACT domain-c 99.8 5.4E-19 1.2E-23 129.9 9.4 69 46-120 2-70 (72)
3 cd04896 ACT_ACR-like_3 ACT dom 99.8 3.2E-18 6.9E-23 126.8 9.6 71 50-125 3-75 (75)
4 cd04927 ACT_ACR-like_2 Second 99.6 5.7E-15 1.2E-19 107.7 9.7 68 50-122 3-71 (76)
5 PRK05007 PII uridylyl-transfer 99.6 4E-15 8.7E-20 149.5 11.3 90 22-124 791-880 (884)
6 cd04900 ACT_UUR-like_1 ACT dom 99.6 1.8E-14 3.8E-19 103.2 9.5 71 48-122 2-73 (73)
7 PRK01759 glnD PII uridylyl-tra 99.6 1.4E-14 2.9E-19 145.2 10.7 89 21-122 765-853 (854)
8 cd04925 ACT_ACR_2 ACT domain-c 99.5 6E-14 1.3E-18 101.4 10.0 70 50-123 3-73 (74)
9 PRK00275 glnD PII uridylyl-tra 99.4 1.1E-12 2.4E-17 132.3 13.6 94 20-125 795-888 (895)
10 PRK04374 PII uridylyl-transfer 99.4 1.1E-12 2.5E-17 132.0 11.9 90 21-123 778-867 (869)
11 COG2844 GlnD UTP:GlnB (protein 99.4 8.8E-13 1.9E-17 131.7 9.9 89 21-122 773-861 (867)
12 TIGR01693 UTase_glnD [Protein- 99.3 6.4E-12 1.4E-16 125.4 10.9 88 22-122 762-849 (850)
13 PRK05092 PII uridylyl-transfer 99.3 1.9E-11 4.1E-16 123.5 12.8 93 22-126 826-918 (931)
14 cd04926 ACT_ACR_4 C-terminal 99.3 3.4E-11 7.3E-16 86.5 9.3 67 48-119 2-68 (72)
15 PRK03381 PII uridylyl-transfer 99.2 4.1E-11 8.8E-16 119.3 10.6 83 23-119 691-773 (774)
16 PRK03059 PII uridylyl-transfer 99.2 9.1E-11 2E-15 118.0 11.8 87 22-123 769-855 (856)
17 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 1.8E-10 4E-15 79.9 9.6 68 50-122 3-70 (70)
18 TIGR01693 UTase_glnD [Protein- 99.1 2.1E-09 4.5E-14 107.6 16.9 138 29-181 655-801 (850)
19 PRK01759 glnD PII uridylyl-tra 99.1 2.6E-09 5.6E-14 107.6 14.9 136 29-181 664-805 (854)
20 PRK05007 PII uridylyl-transfer 99.1 3.1E-09 6.8E-14 107.3 14.9 137 29-181 688-830 (884)
21 cd04928 ACT_TyrKc Uncharacteri 99.0 2.8E-09 6.2E-14 77.8 7.8 50 49-98 3-53 (68)
22 cd04873 ACT_UUR-ACR-like ACT d 98.9 1.4E-08 3.1E-13 69.5 9.4 68 49-121 2-69 (70)
23 PRK05092 PII uridylyl-transfer 98.9 8.3E-08 1.8E-12 97.4 17.1 135 31-180 721-864 (931)
24 PRK00275 glnD PII uridylyl-tra 98.7 3.2E-07 6.9E-12 93.2 15.6 76 48-126 705-781 (895)
25 PRK03381 PII uridylyl-transfer 98.6 5.9E-07 1.3E-11 89.9 13.6 70 48-125 600-669 (774)
26 PRK03059 PII uridylyl-transfer 98.6 1.2E-06 2.5E-11 88.7 15.8 74 48-126 679-753 (856)
27 PF01842 ACT: ACT domain; Int 98.4 4.1E-06 9E-11 56.6 8.7 37 50-86 3-39 (66)
28 PRK04374 PII uridylyl-transfer 98.3 1E-05 2.2E-10 82.3 14.6 71 48-125 691-762 (869)
29 PF13740 ACT_6: ACT domain; PD 98.1 2.6E-05 5.7E-10 56.4 9.2 66 48-124 3-68 (76)
30 cd04894 ACT_ACR-like_1 ACT dom 98.0 4.1E-05 8.9E-10 56.2 7.5 65 50-121 3-67 (69)
31 PF13291 ACT_4: ACT domain; PD 97.8 0.00012 2.6E-09 52.6 7.8 50 45-94 4-55 (80)
32 cd04870 ACT_PSP_1 CT domains f 97.8 0.00014 3E-09 52.2 7.9 64 50-123 2-65 (75)
33 COG2844 GlnD UTP:GlnB (protein 97.7 0.00041 9E-09 70.6 12.3 76 48-128 685-761 (867)
34 cd04869 ACT_GcvR_2 ACT domains 97.7 0.00027 5.7E-09 50.4 7.9 67 50-122 2-70 (81)
35 cd04875 ACT_F4HF-DF N-terminal 97.7 0.00021 4.5E-09 50.8 7.2 66 50-122 2-67 (74)
36 cd04893 ACT_GcvR_1 ACT domains 97.6 0.00029 6.4E-09 51.1 7.4 66 48-124 2-67 (77)
37 cd04872 ACT_1ZPV ACT domain pr 97.6 0.00036 7.7E-09 51.4 7.8 67 49-124 3-69 (88)
38 PRK00194 hypothetical protein; 97.5 0.00064 1.4E-08 49.9 7.4 68 48-124 4-71 (90)
39 PRK06027 purU formyltetrahydro 97.1 0.0027 5.9E-08 57.1 9.1 92 48-152 7-100 (286)
40 cd04887 ACT_MalLac-Enz ACT_Mal 97.1 0.0065 1.4E-07 42.3 8.7 43 51-93 3-46 (74)
41 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.0 0.007 1.5E-07 41.3 8.0 36 47-84 2-37 (79)
42 PRK00227 glnD PII uridylyl-tra 97.0 0.00086 1.9E-08 67.3 4.6 41 50-94 634-674 (693)
43 cd04886 ACT_ThrD-II-like C-ter 97.0 0.0086 1.9E-07 40.2 8.2 33 51-83 2-34 (73)
44 PRK00227 glnD PII uridylyl-tra 96.9 0.0083 1.8E-07 60.3 11.4 104 7-123 511-614 (693)
45 cd04877 ACT_TyrR N-terminal AC 96.9 0.0026 5.6E-08 45.3 5.7 35 49-83 2-36 (74)
46 COG0788 PurU Formyltetrahydrof 96.9 0.0038 8.2E-08 56.9 7.5 105 48-163 8-113 (287)
47 PRK13011 formyltetrahydrofolat 96.7 0.0071 1.5E-07 54.6 8.1 94 48-153 8-101 (286)
48 cd04888 ACT_PheB-BS C-terminal 96.6 0.017 3.8E-07 40.1 8.0 45 49-93 2-47 (76)
49 PRK13010 purU formyltetrahydro 96.6 0.0094 2E-07 53.9 8.3 100 49-159 11-112 (289)
50 cd04879 ACT_3PGDH-like ACT_3PG 96.6 0.0099 2.1E-07 39.6 6.3 44 50-93 2-47 (71)
51 TIGR00655 PurU formyltetrahydr 96.6 0.01 2.2E-07 53.5 8.0 93 50-153 3-96 (280)
52 PRK11589 gcvR glycine cleavage 96.5 0.0087 1.9E-07 51.3 6.9 65 47-122 8-72 (190)
53 cd04878 ACT_AHAS N-terminal AC 96.5 0.027 5.8E-07 37.7 8.0 45 51-95 4-49 (72)
54 cd04874 ACT_Af1403 N-terminal 96.3 0.036 7.7E-07 37.3 7.5 35 49-83 2-36 (72)
55 PRK08577 hypothetical protein; 96.1 0.082 1.8E-06 42.2 10.2 53 29-84 41-93 (136)
56 cd04908 ACT_Bt0572_1 N-termina 96.1 0.053 1.2E-06 37.6 8.0 45 49-95 3-47 (66)
57 cd04876 ACT_RelA-SpoT ACT dom 96.1 0.056 1.2E-06 34.5 7.6 36 51-86 2-37 (71)
58 cd04903 ACT_LSD C-terminal ACT 96.1 0.041 8.8E-07 36.8 7.0 43 51-93 3-47 (71)
59 cd04909 ACT_PDH-BS C-terminal 96.0 0.075 1.6E-06 36.6 8.3 45 50-94 4-50 (69)
60 cd04905 ACT_CM-PDT C-terminal 95.9 0.088 1.9E-06 37.8 8.4 44 52-95 6-50 (80)
61 cd02116 ACT ACT domains are co 95.6 0.059 1.3E-06 32.4 5.9 34 51-84 2-35 (60)
62 cd04889 ACT_PDH-BS-like C-term 95.4 0.062 1.3E-06 35.8 5.8 45 51-95 2-47 (56)
63 cd04898 ACT_ACR-like_4 ACT dom 95.3 0.04 8.8E-07 41.6 5.1 68 50-118 3-74 (77)
64 PRK07334 threonine dehydratase 95.1 0.16 3.4E-06 47.3 9.5 48 46-93 325-377 (403)
65 cd04901 ACT_3PGDH C-terminal A 94.5 0.038 8.2E-07 37.7 2.8 43 51-93 3-45 (69)
66 PRK11589 gcvR glycine cleavage 94.5 0.16 3.5E-06 43.5 7.2 70 48-123 96-167 (190)
67 cd04884 ACT_CBS C-terminal ACT 94.3 0.27 5.9E-06 34.4 7.0 34 50-83 2-35 (72)
68 PRK04435 hypothetical protein; 94.1 0.45 9.8E-06 38.9 8.9 48 46-93 68-116 (147)
69 cd04931 ACT_PAH ACT domain of 93.5 0.67 1.5E-05 35.2 8.3 51 45-98 14-65 (90)
70 cd04880 ACT_AAAH-PDT-like ACT 93.1 0.74 1.6E-05 32.4 7.5 44 52-95 4-48 (75)
71 PRK11092 bifunctional (p)ppGpp 93.0 0.87 1.9E-05 46.2 10.5 42 45-86 624-665 (702)
72 PRK10872 relA (p)ppGpp synthet 92.6 0.73 1.6E-05 47.1 9.4 48 46-93 665-714 (743)
73 cd04883 ACT_AcuB C-terminal AC 92.6 1.7 3.6E-05 29.8 8.5 32 48-79 2-33 (72)
74 cd04902 ACT_3PGDH-xct C-termin 92.4 0.4 8.6E-06 32.7 5.2 42 52-93 4-47 (73)
75 TIGR00119 acolac_sm acetolacta 92.2 0.89 1.9E-05 38.0 7.9 63 50-123 4-68 (157)
76 cd04882 ACT_Bt0572_2 C-termina 91.7 0.57 1.2E-05 31.2 5.2 33 52-84 4-36 (65)
77 CHL00100 ilvH acetohydroxyacid 91.6 1.2 2.6E-05 37.9 8.2 64 50-124 5-70 (174)
78 TIGR00691 spoT_relA (p)ppGpp s 91.4 1.1 2.4E-05 45.2 9.0 40 45-84 608-647 (683)
79 cd04904 ACT_AAAH ACT domain of 90.6 1.7 3.6E-05 31.2 7.0 45 52-97 5-50 (74)
80 PRK11895 ilvH acetolactate syn 90.4 1.8 3.9E-05 36.4 8.0 63 50-123 5-69 (161)
81 COG3830 ACT domain-containing 89.9 0.71 1.5E-05 35.9 4.8 45 49-93 5-49 (90)
82 cd04929 ACT_TPH ACT domain of 89.6 1.9 4.2E-05 31.4 6.7 45 52-97 5-50 (74)
83 COG0317 SpoT Guanosine polypho 86.9 3.3 7.3E-05 42.3 8.7 49 45-93 625-673 (701)
84 COG2716 GcvR Glycine cleavage 85.9 1.2 2.5E-05 38.5 4.2 63 48-121 6-68 (176)
85 COG2716 GcvR Glycine cleavage 85.5 2.1 4.6E-05 36.9 5.6 52 25-76 68-121 (176)
86 PRK06349 homoserine dehydrogen 84.4 7.7 0.00017 36.6 9.4 50 45-96 348-397 (426)
87 TIGR02258 2_5_ligase 2'-5' RNA 82.7 23 0.0005 28.5 10.3 118 3-171 11-133 (179)
88 PRK10820 DNA-binding transcrip 82.5 3.2 6.9E-05 40.1 6.1 43 48-95 1-43 (520)
89 PRK06382 threonine dehydratase 82.5 8.7 0.00019 35.9 8.8 36 46-81 329-364 (406)
90 PRK11899 prephenate dehydratas 81.9 10 0.00022 34.3 8.8 55 46-104 195-250 (279)
91 cd04885 ACT_ThrD-I Tandem C-te 81.8 13 0.00028 25.8 7.5 42 52-94 3-44 (68)
92 PRK11152 ilvM acetolactate syn 80.7 9.1 0.0002 28.4 6.7 44 50-93 6-51 (76)
93 COG1707 ACT domain-containing 77.5 9.1 0.0002 33.6 6.6 53 50-105 5-57 (218)
94 cd04930 ACT_TH ACT domain of t 76.4 13 0.00028 29.4 6.9 50 46-98 42-92 (115)
95 PF13710 ACT_5: ACT domain; PD 76.2 15 0.00031 25.9 6.4 40 56-95 1-42 (63)
96 TIGR01127 ilvA_1Cterm threonin 75.5 21 0.00046 32.7 8.9 35 46-80 304-338 (380)
97 PRK06737 acetolactate synthase 71.5 26 0.00056 26.1 7.0 32 50-81 5-36 (76)
98 PF13978 DUF4223: Protein of u 71.3 1 2.2E-05 32.1 -0.5 15 154-168 32-46 (56)
99 PRK08818 prephenate dehydrogen 69.9 14 0.00031 34.8 6.5 43 52-95 300-343 (370)
100 PF13840 ACT_7: ACT domain ; P 69.8 11 0.00024 26.3 4.5 28 49-76 8-39 (65)
101 COG3283 TyrR Transcriptional r 69.4 8.6 0.00019 37.5 5.0 34 48-81 1-34 (511)
102 COG0077 PheA Prephenate dehydr 68.3 33 0.00072 31.5 8.4 55 46-104 195-250 (279)
103 PF10555 MraY_sig1: Phospho-N- 68.2 1.9 4E-05 22.7 0.2 8 183-190 3-10 (13)
104 PF05088 Bac_GDH: Bacterial NA 66.6 77 0.0017 35.5 12.0 77 48-128 490-571 (1528)
105 PRK10622 pheA bifunctional cho 65.8 35 0.00075 32.3 8.2 64 46-121 298-362 (386)
106 PF13563 2_5_RNA_ligase2: 2'-5 65.5 45 0.00098 25.4 7.6 84 53-171 35-120 (153)
107 cd04906 ACT_ThrD-I_1 First of 63.5 55 0.0012 23.8 7.8 40 52-93 6-45 (85)
108 PRK13562 acetolactate synthase 62.5 45 0.00097 25.5 6.8 64 50-123 5-70 (84)
109 PRK08198 threonine dehydratase 60.9 77 0.0017 29.3 9.5 36 46-81 326-361 (404)
110 cd04937 ACT_AKi-DapG-BS_2 ACT 60.6 51 0.0011 22.4 8.1 50 56-118 13-62 (64)
111 cd04917 ACT_AKiii-LysC-EC_2 AC 60.4 50 0.0011 22.3 6.7 50 56-118 13-62 (64)
112 PRK11898 prephenate dehydratas 56.6 37 0.0008 30.6 6.4 45 52-97 201-247 (283)
113 cd04919 ACT_AK-Hom3_2 ACT doma 55.1 60 0.0013 21.6 6.2 24 55-78 12-35 (66)
114 cd04915 ACT_AK-Ectoine_2 ACT d 51.4 68 0.0015 22.3 5.8 51 57-118 14-64 (66)
115 cd04922 ACT_AKi-HSDH-ThrA_2 AC 50.7 69 0.0015 21.0 7.9 24 55-78 12-35 (66)
116 COG3978 Acetolactate synthase 47.6 1.1E+02 0.0024 23.7 6.7 65 48-124 4-70 (86)
117 PRK14633 hypothetical protein; 47.2 1.3E+02 0.0029 24.7 7.8 57 61-125 7-63 (150)
118 PRK08526 threonine dehydratase 45.1 1.5E+02 0.0031 28.1 8.7 37 46-82 325-361 (403)
119 PRK00092 ribosome maturation p 44.1 1.4E+02 0.0029 24.5 7.4 59 60-125 9-67 (154)
120 cd04918 ACT_AK1-AT_2 ACT domai 43.7 1E+02 0.0023 21.0 6.4 52 56-118 12-63 (65)
121 PLN02317 arogenate dehydratase 43.5 1.4E+02 0.0031 28.6 8.4 39 46-86 284-322 (382)
122 cd04920 ACT_AKiii-DAPDC_2 ACT 42.8 1.1E+02 0.0024 21.0 6.4 50 56-118 12-61 (63)
123 PRK14645 hypothetical protein; 42.7 1.6E+02 0.0036 24.5 7.7 63 58-125 9-71 (154)
124 PRK14646 hypothetical protein; 42.3 2E+02 0.0043 23.9 8.3 61 59-124 8-68 (155)
125 COG4492 PheB ACT domain-contai 42.1 1.6E+02 0.0034 25.0 7.4 49 46-94 71-120 (150)
126 PRK14636 hypothetical protein; 39.9 2.3E+02 0.0049 24.1 8.3 61 60-125 7-67 (176)
127 PRK11790 D-3-phosphoglycerate 39.2 80 0.0017 29.9 6.0 45 49-93 340-384 (409)
128 cd04891 ACT_AK-LysC-DapG-like_ 38.1 1E+02 0.0022 19.3 5.0 24 54-77 8-31 (61)
129 PRK08178 acetolactate synthase 38.1 1.8E+02 0.0039 22.8 6.8 29 50-78 11-39 (96)
130 TIGR01270 Trp_5_monoox tryptop 36.8 1.7E+02 0.0038 28.9 8.0 44 52-95 36-81 (464)
131 PRK14634 hypothetical protein; 35.6 2.6E+02 0.0056 23.2 8.1 61 60-125 9-69 (155)
132 PRK06545 prephenate dehydrogen 35.5 2E+02 0.0044 26.3 7.9 47 47-93 290-336 (359)
133 COG4747 ACT domain-containing 35.4 78 0.0017 26.4 4.6 37 49-85 5-41 (142)
134 cd04913 ACT_AKii-LysC-BS-like_ 34.8 42 0.0009 22.2 2.5 24 53-76 8-31 (75)
135 PRK14647 hypothetical protein; 34.5 2.2E+02 0.0047 23.6 7.2 57 62-125 12-68 (159)
136 PRK14632 hypothetical protein; 34.5 2.3E+02 0.0049 24.0 7.4 56 62-125 12-67 (172)
137 PRK14639 hypothetical protein; 33.3 1.9E+02 0.0042 23.5 6.7 55 64-125 3-57 (140)
138 cd04871 ACT_PSP_2 ACT domains 32.6 34 0.00074 25.2 2.0 28 50-77 2-30 (84)
139 TIGR00719 sda_beta L-serine de 32.5 2.6E+02 0.0057 23.9 7.6 42 52-93 153-196 (208)
140 PRK14637 hypothetical protein; 32.0 2.7E+02 0.0059 23.0 7.4 60 58-124 8-67 (151)
141 PRK12483 threonine dehydratase 31.8 2.8E+02 0.0061 27.4 8.6 50 46-97 344-393 (521)
142 PRK14638 hypothetical protein; 31.6 2.8E+02 0.0061 22.8 7.4 59 61-125 11-69 (150)
143 COG3384 Aromatic ring-opening 31.2 78 0.0017 29.1 4.4 64 11-74 93-162 (268)
144 PF09876 DUF2103: Predicted me 30.2 1.1E+02 0.0024 24.3 4.6 33 80-121 70-102 (103)
145 TIGR01268 Phe4hydrox_tetr phen 30.0 2.6E+02 0.0056 27.4 7.9 48 46-95 17-65 (436)
146 PF11482 DUF3208: Protein of u 29.1 17 0.00037 29.1 -0.2 8 156-163 9-16 (108)
147 PF02576 DUF150: Uncharacteris 28.6 2.2E+02 0.0049 22.6 6.2 55 64-125 2-56 (141)
148 PF14414 WHH: A nuclease of th 27.6 23 0.00049 23.7 0.2 40 152-196 4-43 (43)
149 COG4747 ACT domain-containing 27.3 56 0.0012 27.2 2.5 25 52-76 74-98 (142)
150 PRK08210 aspartate kinase I; R 27.1 2.2E+02 0.0049 26.3 6.8 51 55-118 350-400 (403)
151 KOG4552 Vitamin-D-receptor int 26.7 34 0.00073 31.0 1.2 39 118-156 228-270 (272)
152 PRK14640 hypothetical protein; 26.7 3.6E+02 0.0079 22.2 7.3 59 60-125 8-66 (152)
153 PF09383 NIL: NIL domain; Int 26.6 2.3E+02 0.005 19.8 9.4 49 46-95 3-52 (76)
154 PRK14643 hypothetical protein; 25.2 4.1E+02 0.0089 22.3 8.2 61 60-125 11-73 (164)
155 PRK08639 threonine dehydratase 23.5 5.6E+02 0.012 24.1 8.8 50 46-95 335-385 (420)
156 PRK08335 translation initiatio 22.9 2.9E+02 0.0063 25.2 6.5 36 48-84 136-172 (275)
157 cd07245 Glo_EDI_BRP_like_9 Thi 22.7 1.7E+02 0.0037 20.0 4.0 44 48-98 66-109 (114)
158 TIGR00656 asp_kin_monofn aspar 22.1 3.2E+02 0.0069 25.2 6.7 50 55-118 348-398 (401)
159 cd04868 ACT_AK-like ACT domain 21.6 1E+02 0.0023 18.9 2.5 22 56-77 12-33 (60)
160 TIGR02079 THD1 threonine dehyd 21.5 6.9E+02 0.015 23.5 8.9 48 46-93 324-372 (409)
161 PRK14630 hypothetical protein; 21.4 4E+02 0.0087 21.8 6.5 61 58-125 8-68 (143)
162 PF09059 TyeA: TyeA; InterPro 21.1 1.3E+02 0.0028 23.1 3.3 46 55-125 39-84 (87)
163 PF12468 TTSSLRR: Type III sec 20.9 51 0.0011 22.5 0.9 13 191-203 24-36 (46)
164 COG3603 Uncharacterized conser 20.8 1.9E+02 0.0041 24.0 4.3 52 24-75 36-94 (128)
165 cd04924 ACT_AK-Arch_2 ACT doma 20.4 2.6E+02 0.0055 18.1 7.1 24 55-78 12-35 (66)
No 1
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.81 E-value=2.2e-19 Score=132.93 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=65.7
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhh
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 124 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~ 124 (208)
++|.|.||||||+||+++|.++++.|..|.|+|.|+||.|+|||+|..|.+..|++ ..+.|+++|.++|++
T Consensus 4 veV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~----~~~~l~~~L~~al~~ 74 (75)
T cd04897 4 VTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEG----ERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHH----HHHHHHHHHHHHHhc
Confidence 34999999999999999999999999999999999999999999999998888885 478899999998876
No 2
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.79 E-value=5.4e-19 Score=129.91 Aligned_cols=69 Identities=23% Similarity=0.365 Sum_probs=61.9
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHH
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRS 120 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~ 120 (208)
++|+ |.|.||||||++|+++|..+||+|..|.|+|+|+|+.|+|||+|..|++..|++ .++.|+++|..
T Consensus 2 Tvie--v~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~----~~~~l~~~L~~ 70 (72)
T cd04895 2 TLVK--VDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDS----LIAYIEKSLGT 70 (72)
T ss_pred EEEE--EEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHH----HHHHHHHHhcc
Confidence 4455 999999999999999999999999999999999999999999999888888875 47888888764
No 3
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.76 E-value=3.2e-18 Score=126.78 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=64.1
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEe--ecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA--TLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIa--TlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
++|.|.||||||++|+++|..++|++..|.|+ |+|+|+.|+||| +..+++..|++ ..+.|+++|..+|+.|
T Consensus 3 lev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~----~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 3 LQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPK----KQAALCARLREEMVCP 75 (75)
T ss_pred EEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHH----HHHHHHHHHHHHhcCC
Confidence 34999999999999999999999999999999 999999999999 77877877875 4789999999998764
No 4
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.61 E-value=5.7e-15 Score=107.74 Aligned_cols=68 Identities=28% Similarity=0.531 Sum_probs=55.2
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEee-cCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHH
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT-LEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVL 122 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaT-lGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vL 122 (208)
++|+|.||||||++|+++|..+||+|+.|+|.| .||++.|+|||+|..+. ..+++. .+.|+++|..+|
T Consensus 3 ~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~----~~~l~~~L~~~L 71 (76)
T cd04927 3 LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKR----REETYDYLRAVL 71 (76)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHH----HHHHHHHHHHHH
Confidence 569999999999999999999999999999996 99999999999987543 444443 345555555554
No 5
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.60 E-value=4e-15 Score=149.46 Aligned_cols=90 Identities=22% Similarity=0.397 Sum_probs=75.9
Q ss_pred CCCCCCCcceeEEEccccCCCCCceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCc
Q 037071 22 GFLRPTDIDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNF 101 (208)
Q Consensus 22 g~~vPtEaDEV~Vd~~~~~~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~ 101 (208)
.+.+|+. |.++|..++ . +++|+ |+|.||||||++|+++|.++||+|..|+|+|+|+||+|||||++..|++.
T Consensus 791 ~~~~~~~---V~~d~~~s~--~-~TvlE--V~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l 862 (884)
T PRK05007 791 HFNVPTE---VSFLPTHTD--R-RSYME--LIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRAL 862 (884)
T ss_pred CCCCCCE---EEEccCCCC--C-eEEEE--EEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcC
Confidence 4566665 999998874 2 45555 99999999999999999999999999999999999999999999876655
Q ss_pred cChHHHHHHHHHHHHHHHHHHhh
Q 037071 102 ENTEVCQSLVSSVHQAIRSVLDK 124 (208)
Q Consensus 102 ~D~~~~~~~~~sVrqAL~~vLe~ 124 (208)
+ ++ ..+.|+++|..+|+.
T Consensus 863 ~-~~----~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 863 N-EE----LQQELRQRLTEALNP 880 (884)
T ss_pred C-HH----HHHHHHHHHHHHHhh
Confidence 4 43 468999999999865
No 6
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.57 E-value=1.8e-14 Score=103.23 Aligned_cols=71 Identities=23% Similarity=0.367 Sum_probs=59.2
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeec-CCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHH
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL-EGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVL 122 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTl-GGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vL 122 (208)
.+++|+|.||||||++|+++|..+||.|+.|.|.|. +|++.|+|||++..+....+++ ..+.|+++|..+|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~----~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERE----RLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHH----HHHHHHHHHHhhC
Confidence 456799999999999999999999999999999988 6999999999987655555554 3566777776653
No 7
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.56 E-value=1.4e-14 Score=145.20 Aligned_cols=89 Identities=20% Similarity=0.380 Sum_probs=75.1
Q ss_pred cCCCCCCCcceeEEEccccCCCCCceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcC
Q 037071 21 EGFLRPTDIDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELN 100 (208)
Q Consensus 21 ~g~~vPtEaDEV~Vd~~~~~~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~ 100 (208)
..|.+|++ |.++|..++ . +++|+ |.|.||||||++|+++|.++|++|..|+|+|+|+||.|||||+|..|.+
T Consensus 765 ~~~~~~~~---V~~dn~~s~--~-~T~ie--v~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~ 836 (854)
T PRK01759 765 QHFHVKTE---VRFLNEEKQ--E-QTEME--LFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQA 836 (854)
T ss_pred cCCCCCCE---EEEccCCCC--C-eEEEE--EEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCc
Confidence 34567775 999998874 2 45555 9999999999999999999999999999999999999999999988776
Q ss_pred ccChHHHHHHHHHHHHHHHHHH
Q 037071 101 FENTEVCQSLVSSVHQAIRSVL 122 (208)
Q Consensus 101 ~~D~~~~~~~~~sVrqAL~~vL 122 (208)
.++.+ .+.|+++|..+|
T Consensus 837 l~~~~-----~~~l~~~L~~~l 853 (854)
T PRK01759 837 LDEEE-----RKALKSRLLSNL 853 (854)
T ss_pred CChHH-----HHHHHHHHHHHh
Confidence 66653 378888888775
No 8
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.54 E-value=6e-14 Score=101.38 Aligned_cols=70 Identities=24% Similarity=0.372 Sum_probs=60.0
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeecc-CcCccChHHHHHHHHHHHHHHHHHHh
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCK-ELNFENTEVCQSLVSSVHQAIRSVLD 123 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~-gg~~~D~~~~~~~~~sVrqAL~~vLe 123 (208)
++|.|.||||||++|+++|..+|+.|+.|+|.|.||++.|+|||+|.. +.+..+++ ..+.|+++|..+|.
T Consensus 3 ~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~----~~~~i~~~L~~~l~ 73 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPI----RLASIEDRLDNVLR 73 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHH----HHHHHHHHHHHHhc
Confidence 359999999999999999999999999999999999999999999876 44444554 46788888887764
No 9
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.44 E-value=1.1e-12 Score=132.26 Aligned_cols=94 Identities=24% Similarity=0.402 Sum_probs=77.6
Q ss_pred ccCCCCCCCcceeEEEccccCCCCCceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCc
Q 037071 20 TEGFLRPTDIDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKEL 99 (208)
Q Consensus 20 ~~g~~vPtEaDEV~Vd~~~~~~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg 99 (208)
.+.+++|+. |.+++..+. + .+ .++|+|.||||||++|+++|..+||+|+.|+|+|.||+|.|+|||++..|+
T Consensus 795 ~~~~~~~~~---V~i~~~~~~--~-~T--~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~ 866 (895)
T PRK00275 795 LKHFAFPTQ---VTISNDAQR--P-VT--VLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQ 866 (895)
T ss_pred ccCCCCCCE---EEEEECCCC--C-eE--EEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCC
Confidence 345667765 888888763 2 34 455999999999999999999999999999999999999999999998877
Q ss_pred CccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 100 NFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 100 ~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
+..+++ ..+.|+++|..+|+..
T Consensus 867 ~l~~~~----~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 867 PLSDPQ----LCSRLQDAICEQLDAR 888 (895)
T ss_pred CCCCHH----HHHHHHHHHHHHHhcc
Confidence 666654 4678888888888654
No 10
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.42 E-value=1.1e-12 Score=131.96 Aligned_cols=90 Identities=24% Similarity=0.385 Sum_probs=75.2
Q ss_pred cCCCCCCCcceeEEEccccCCCCCceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcC
Q 037071 21 EGFLRPTDIDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELN 100 (208)
Q Consensus 21 ~g~~vPtEaDEV~Vd~~~~~~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~ 100 (208)
..|.+||. |.+++..+. + .+ .++|+|.||||||++|+++|.+++|+|+.|+|+|.||+|.|+|||+|..+++
T Consensus 778 ~~~~~~~~---V~~~~~~~~--~-~t--~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~ 849 (869)
T PRK04374 778 RHFRFAPR---VEFSESAGG--R-RT--RISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRP 849 (869)
T ss_pred cCCCCCCe---EEEeecCCC--C-eE--EEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCc
Confidence 46778886 999887763 2 34 4559999999999999999999999999999999999999999999987665
Q ss_pred ccChHHHHHHHHHHHHHHHHHHh
Q 037071 101 FENTEVCQSLVSSVHQAIRSVLD 123 (208)
Q Consensus 101 ~~D~~~~~~~~~sVrqAL~~vLe 123 (208)
..+.+ .+.|+++|..+|+
T Consensus 850 ~~~~~-----~~~l~~~L~~~l~ 867 (869)
T PRK04374 850 LSESA-----RQALRDALCACLD 867 (869)
T ss_pred CChHH-----HHHHHHHHHHHhc
Confidence 55543 2888898888874
No 11
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8.8e-13 Score=131.69 Aligned_cols=89 Identities=24% Similarity=0.377 Sum_probs=73.5
Q ss_pred cCCCCCCCcceeEEEccccCCCCCceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcC
Q 037071 21 EGFLRPTDIDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELN 100 (208)
Q Consensus 21 ~g~~vPtEaDEV~Vd~~~~~~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~ 100 (208)
.+|++||+ |++.+..+. . .++++ |.|.||||||++|+++|.+++|+++.|+|+|+|+||.|+||||+..+.+
T Consensus 773 ~~f~i~p~---v~i~~t~~~--~-~t~lE--v~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~ 844 (867)
T COG2844 773 RHFPIPPR---VTILPTASN--D-KTVLE--VRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQA 844 (867)
T ss_pred ceeccCCc---eeeccccCC--C-ceEEE--EEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEecccccc
Confidence 47999999 999999874 2 46666 9999999999999999999999999999999999999999999998777
Q ss_pred ccChHHHHHHHHHHHHHHHHHH
Q 037071 101 FENTEVCQSLVSSVHQAIRSVL 122 (208)
Q Consensus 101 ~~D~~~~~~~~~sVrqAL~~vL 122 (208)
. +++. ..++.++|..++
T Consensus 845 l-~~~~----~q~l~~~ll~al 861 (867)
T COG2844 845 L-NAEL----RQSLLQRLLEAL 861 (867)
T ss_pred C-CHHH----HHHHHHHHHHHh
Confidence 6 4432 345555555544
No 12
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.33 E-value=6.4e-12 Score=125.42 Aligned_cols=88 Identities=23% Similarity=0.346 Sum_probs=73.8
Q ss_pred CCCCCCCcceeEEEccccCCCCCceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCc
Q 037071 22 GFLRPTDIDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNF 101 (208)
Q Consensus 22 g~~vPtEaDEV~Vd~~~~~~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~ 101 (208)
.+.+|++ |.|++..+. . ++++. |.|.||||||++|+++|.++|+.|..|.|+|.|+++.|+|||++..|.+.
T Consensus 762 ~~~~~~~---V~~d~~~s~--~-~t~~~--v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~ 833 (850)
T TIGR01693 762 HFAVPPR---VTILNTASR--K-ATIME--VRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKL 833 (850)
T ss_pred CCCCCCe---EEEccCCCC--C-eEEEE--EEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCC
Confidence 4556666 999998873 2 35555 99999999999999999999999999999999999999999999887766
Q ss_pred cChHHHHHHHHHHHHHHHHHH
Q 037071 102 ENTEVCQSLVSSVHQAIRSVL 122 (208)
Q Consensus 102 ~D~~~~~~~~~sVrqAL~~vL 122 (208)
.+ + ..+.|+++|..+|
T Consensus 834 ~~-~----~~~~l~~~L~~~l 849 (850)
T TIGR01693 834 TD-E----EEQRLLEVLAASV 849 (850)
T ss_pred CH-H----HHHHHHHHHHHHh
Confidence 65 3 3578888887765
No 13
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.30 E-value=1.9e-11 Score=123.45 Aligned_cols=93 Identities=25% Similarity=0.356 Sum_probs=77.9
Q ss_pred CCCCCCCcceeEEEccccCCCCCceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCc
Q 037071 22 GFLRPTDIDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNF 101 (208)
Q Consensus 22 g~~vPtEaDEV~Vd~~~~~~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~ 101 (208)
.|.+|+. |.+++..+. + . ..++|.|.||||||++|+++|.++|+.|..|.|.|.|+++.|+|||++..+.+.
T Consensus 826 ~~~~~~~---V~~~~~~s~--~-~--t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i 897 (931)
T PRK05092 826 AFHVPPR---VTIDNEASN--R-F--TVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKI 897 (931)
T ss_pred CCCCCCE---EEEeeCCCC--C-e--EEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcC
Confidence 4555555 999987763 2 3 445599999999999999999999999999999999999999999999887777
Q ss_pred cChHHHHHHHHHHHHHHHHHHhhcc
Q 037071 102 ENTEVCQSLVSSVHQAIRSVLDKFS 126 (208)
Q Consensus 102 ~D~~~~~~~~~sVrqAL~~vLe~~s 126 (208)
.+++ ..+.|+++|..+|+...
T Consensus 898 ~~~~----~~~~l~~~L~~~L~~~~ 918 (931)
T PRK05092 898 TNEA----RQAAIRRALLAALAEGE 918 (931)
T ss_pred CCHH----HHHHHHHHHHHHhcCcc
Confidence 7764 36889999999997643
No 14
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.28 E-value=3.4e-11 Score=86.46 Aligned_cols=67 Identities=27% Similarity=0.407 Sum_probs=58.0
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHH
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIR 119 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~ 119 (208)
.++.|.++||||||++|+++|..+++.|+.|.|.|.++++.++|+|++..++.. +.+ ..+.|+++|+
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~----~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPK----TIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHH----HHHHHHHHhc
Confidence 466799999999999999999999999999999999999999999998765544 443 4677888887
No 15
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.23 E-value=4.1e-11 Score=119.31 Aligned_cols=83 Identities=22% Similarity=0.263 Sum_probs=66.8
Q ss_pred CCCCCCcceeEEEccccCCCCCceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCcc
Q 037071 23 FLRPTDIDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFE 102 (208)
Q Consensus 23 ~~vPtEaDEV~Vd~~~~~~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~ 102 (208)
+.+|+. |.+++..+. + .+ .++|+|.||||||++|+++|.+++++|..|.|.|.||+|.|+|||++..+.+..
T Consensus 691 ~~~~~~---v~~~~~~~~--~-~t--~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~ 762 (774)
T PRK03381 691 PAAPPR---VLWLDGASP--D-AT--VLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLA 762 (774)
T ss_pred CCCCcE---EEEEECCCC--C-eE--EEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCc
Confidence 444444 777777662 2 34 455999999999999999999999999999999999999999999998766555
Q ss_pred ChHHHHHHHHHHHHHHH
Q 037071 103 NTEVCQSLVSSVHQAIR 119 (208)
Q Consensus 103 D~~~~~~~~~sVrqAL~ 119 (208)
|. ++.|+++|.
T Consensus 763 ~~------~~~l~~~L~ 773 (774)
T PRK03381 763 DA------RAAVEQAVL 773 (774)
T ss_pred hH------HHHHHHHhh
Confidence 53 477777774
No 16
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.21 E-value=9.1e-11 Score=118.03 Aligned_cols=87 Identities=25% Similarity=0.408 Sum_probs=68.5
Q ss_pred CCCCCCCcceeEEEccccCCCCCceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCc
Q 037071 22 GFLRPTDIDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNF 101 (208)
Q Consensus 22 g~~vPtEaDEV~Vd~~~~~~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~ 101 (208)
.|.+|+. |.+++..+. + .+. ++|+|.||||||++|+++|..++|+|+.|+|+|.||+|.|+|||++. +.
T Consensus 769 ~~~~~~~---V~~~~~~~~--~-~T~--i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~---~~ 837 (856)
T PRK03059 769 HFPITPR---VDLRPDERG--Q-YYI--LSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS---GL 837 (856)
T ss_pred CCCCCce---EEEEEcCCC--C-EEE--EEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCC---CC
Confidence 4555554 777776652 2 344 45999999999999999999999999999999999999999999542 23
Q ss_pred cChHHHHHHHHHHHHHHHHHHh
Q 037071 102 ENTEVCQSLVSSVHQAIRSVLD 123 (208)
Q Consensus 102 ~D~~~~~~~~~sVrqAL~~vLe 123 (208)
.+++ ..+.|+++|..+|+
T Consensus 838 ~~~~----~~~~l~~~L~~~L~ 855 (856)
T PRK03059 838 SDNR----LQIQLETELLDALA 855 (856)
T ss_pred CCHH----HHHHHHHHHHHHhc
Confidence 3443 46888888888764
No 17
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.20 E-value=1.8e-10 Score=79.93 Aligned_cols=68 Identities=31% Similarity=0.439 Sum_probs=58.3
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHH
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVL 122 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vL 122 (208)
+.|+|.||||+|++|+++|.++++.+..|.+.|.++.+.++|++.+..+.+ .+.+ ..+.|+++|..++
T Consensus 3 l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~~----~~~~i~~~l~~~~ 70 (70)
T cd04899 3 LELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPE----RQEALRAALGEAL 70 (70)
T ss_pred EEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-CCHH----HHHHHHHHHHhhC
Confidence 458999999999999999999999999999999999999999999876555 4443 4677888887653
No 18
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.13 E-value=2.1e-09 Score=107.63 Aligned_cols=138 Identities=15% Similarity=0.222 Sum_probs=91.4
Q ss_pred cceeEEEccccCCCCCceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEe-ecCCeeEEEEEEeeccCcCccChHHH
Q 037071 29 IDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA-TLEGSMKNIFVMASCKELNFENTEVC 107 (208)
Q Consensus 29 aDEV~Vd~~~~~~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIa-TlGGRaknVFyVtd~~gg~~~D~~~~ 107 (208)
.+-|.+++... .+ .+ .+.|.|.||||||++|+.+|..+||.|+.|+|. |.||++.|+|||++..+.+..+++
T Consensus 655 ~~~v~~~~~~~--~~-~t--~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~-- 727 (850)
T TIGR01693 655 GPLALIDGTRP--SG-GT--EVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAER-- 727 (850)
T ss_pred CCEEEEeccCC--CC-eE--EEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHH--
Confidence 34566666444 22 34 455999999999999999999999999999998 899999999999998766665553
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhcCC---CC----CCCcceeccccCCCCCCCCcccccceee-ecccchhHHHHHHH
Q 037071 108 QSLVSSVHQAIRSVLDKFSATEEFLLGA---KL----SNKRRRVSLFDSSLSSSSDYLWHPRITI-SRLRPSLVRTITAV 179 (208)
Q Consensus 108 ~~~~~sVrqAL~~vLe~~sas~e~s~~~---~~----~~KR~R~s~~~ss~ss~~~~~~~~~~~~-~~~~~~~~~~~~~~ 179 (208)
..+.|+++|..+|+.....++..... +. .....||.+-+..| ++| --++| ..=||+|+-.|+.+
T Consensus 728 --~~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s---~~~---t~~~v~~~DrpGll~~i~~~ 799 (850)
T TIGR01693 728 --VFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTAS---RKA---TIMEVRALDRPGLLARVGRT 799 (850)
T ss_pred --HHHHHHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCC---CCe---EEEEEEECCccHHHHHHHHH
Confidence 46788999999987653222111000 00 00112444443322 222 12333 34589999999876
Q ss_pred Hh
Q 037071 180 AQ 181 (208)
Q Consensus 180 ~~ 181 (208)
-.
T Consensus 800 l~ 801 (850)
T TIGR01693 800 LE 801 (850)
T ss_pred HH
Confidence 43
No 19
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.07 E-value=2.6e-09 Score=107.60 Aligned_cols=136 Identities=16% Similarity=0.225 Sum_probs=91.1
Q ss_pred cceeEEEccccCCCCCceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEee-cCCeeEEEEEEeeccCcCccChHHH
Q 037071 29 IDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT-LEGSMKNIFVMASCKELNFENTEVC 107 (208)
Q Consensus 29 aDEV~Vd~~~~~~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaT-lGGRaknVFyVtd~~gg~~~D~~~~ 107 (208)
...|.+++..+. + . ..+.|+|.||||||++|+.+|..+||+|+.|.|.| .+|++.|+|||++..+.+. +++
T Consensus 664 ~~~V~i~~~~~~--~-~--t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~-~~~-- 735 (854)
T PRK01759 664 DLLVKISNRFSR--G-G--TEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLL-EFD-- 735 (854)
T ss_pred CCEEEEEecCCC--C-e--EEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCC-CHH--
Confidence 344777777663 2 3 44559999999999999999999999999999977 9999999999999876555 332
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhcCCC----CCCCcceeccccCCCCCCCCcccccceee-ecccchhHHHHHHHHh
Q 037071 108 QSLVSSVHQAIRSVLDKFSATEEFLLGAK----LSNKRRRVSLFDSSLSSSSDYLWHPRITI-SRLRPSLVRTITAVAQ 181 (208)
Q Consensus 108 ~~~~~sVrqAL~~vLe~~sas~e~s~~~~----~~~KR~R~s~~~ss~ss~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 181 (208)
.++.|+++|..+|+.... .....+.+ ......|+.+-+. .|++|- .|.| ..=||+|.-.|+.+-.
T Consensus 736 --~~~~l~~~L~~aL~~~~~-~~~~~~~~~~~~~~~~~~~V~~dn~---~s~~~T---~iev~a~DrpGLL~~I~~~l~ 805 (854)
T PRK01759 736 --RRRQLEQALTKALNTNKL-KKLNLEENHKLQHFHVKTEVRFLNE---EKQEQT---EMELFALDRAGLLAQVSQVFS 805 (854)
T ss_pred --HHHHHHHHHHHHHcCCCC-cchhccccccccCCCCCCEEEEccC---CCCCeE---EEEEEeCCchHHHHHHHHHHH
Confidence 467899999999876431 11100100 1112235555443 223321 2222 2348999999987643
No 20
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.05 E-value=3.1e-09 Score=107.34 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=89.7
Q ss_pred cceeEEEccccCCCCCceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCC-eeEEEEEEeeccCcCccChHHH
Q 037071 29 IDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEG-SMKNIFVMASCKELNFENTEVC 107 (208)
Q Consensus 29 aDEV~Vd~~~~~~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGG-RaknVFyVtd~~gg~~~D~~~~ 107 (208)
..-|.+++..+. + .+ .+.|+|.||||||++|+.+|..++|.|+.|+|.|.++ ++.|+|||++..+.+. +.+
T Consensus 688 ~p~V~i~~~~~~--~-~t--~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~-~~~-- 759 (884)
T PRK05007 688 KPLVLLSKQATR--G-GT--EIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPL-SQD-- 759 (884)
T ss_pred CCeEEEEecCCC--C-eE--EEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCC-CHH--
Confidence 344777776653 2 34 4559999999999999999999999999999988866 9999999999776655 332
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhcCCC----CCCCcceeccccCCCCCCCCcccccceee-ecccchhHHHHHHHHh
Q 037071 108 QSLVSSVHQAIRSVLDKFSATEEFLLGAK----LSNKRRRVSLFDSSLSSSSDYLWHPRITI-SRLRPSLVRTITAVAQ 181 (208)
Q Consensus 108 ~~~~~sVrqAL~~vLe~~sas~e~s~~~~----~~~KR~R~s~~~ss~ss~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 181 (208)
.++.|+++|..+|+..........+.+ ......||.+-+. .|++|- -|.| ..=||+|.-.|+.+-.
T Consensus 760 --~~~~I~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~---~s~~~T---vlEV~a~DRpGLL~~I~~~l~ 830 (884)
T PRK05007 760 --RHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPT---HTDRRS---YMELIALDQPGLLARVGKIFA 830 (884)
T ss_pred --HHHHHHHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccC---CCCCeE---EEEEEeCCchHHHHHHHHHHH
Confidence 467889999998876532111110000 1111234544433 222221 1222 2448999999987643
No 21
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.97 E-value=2.8e-09 Score=77.78 Aligned_cols=50 Identities=34% Similarity=0.460 Sum_probs=45.6
Q ss_pred EEEEecCCCCCchHHHHHHHHhcCCeeEeeEEe-ecCCeeEEEEEEeeccC
Q 037071 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA-TLEGSMKNIFVMASCKE 98 (208)
Q Consensus 49 rasVcCdDRPGLLSDLtRALreL~L~ivRAEIa-TlGGRaknVFyVtd~~g 98 (208)
++.|+|.|||||+++|+.+|..+||.|+.|.|- |-.|.+-|+|+|.+..+
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~ 53 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKR 53 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCc
Confidence 567999999999999999999999999999996 66899999999998654
No 22
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.92 E-value=1.4e-08 Score=69.51 Aligned_cols=68 Identities=25% Similarity=0.403 Sum_probs=55.8
Q ss_pred EEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHH
Q 037071 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSV 121 (208)
Q Consensus 49 rasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~v 121 (208)
++.|.|+|+||+|++|+++|.++++.|..+.+.|.++++.++|++.+..++. .+.+ ..+.|+++|..+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~----~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP-LDPE----RIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc-CCHH----HHHHHHHHHHhh
Confidence 3569999999999999999999999999999999988999999998865443 3322 356677777654
No 23
>PRK05092 PII uridylyl-transferase; Provisional
Probab=98.87 E-value=8.3e-08 Score=97.38 Aligned_cols=135 Identities=21% Similarity=0.257 Sum_probs=87.1
Q ss_pred eeEEEccccCCCCCceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEee-cCCeeEEEEEEeeccCcCccChHHHHH
Q 037071 31 EVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT-LEGSMKNIFVMASCKELNFENTEVCQS 109 (208)
Q Consensus 31 EV~Vd~~~~~~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaT-lGGRaknVFyVtd~~gg~~~D~~~~~~ 109 (208)
-|.+.+..+. + . .++.|+|.||||||++|+.+|..+|+.|+.|+|.| .+|.+.|+|||++..+....+.+
T Consensus 721 ~v~~~~~~~~--~-~--t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~---- 791 (931)
T PRK05092 721 ATEVRPDPAR--G-V--TEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPR---- 791 (931)
T ss_pred EEEEEecCCC--C-e--EEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHH----
Confidence 3555555442 1 2 45669999999999999999999999999999977 79999999999987655544543
Q ss_pred HHHHHHHHHHHHHhhcccchhhhcCCCC-------CCCcceeccccCCCCCCCCcccccceee-ecccchhHHHHHHHH
Q 037071 110 LVSSVHQAIRSVLDKFSATEEFLLGAKL-------SNKRRRVSLFDSSLSSSSDYLWHPRITI-SRLRPSLVRTITAVA 180 (208)
Q Consensus 110 ~~~sVrqAL~~vLe~~sas~e~s~~~~~-------~~KR~R~s~~~ss~ss~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 180 (208)
..+.|+++|..++............... ..-..+|.+-+. ++.++ -.|.| ..=||.|+-.|+.+-
T Consensus 792 ~~~~l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~---~s~~~---t~i~I~~~DrpGLl~~I~~~l 864 (931)
T PRK05092 792 RLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNE---ASNRF---TVIEVNGRDRPGLLYDLTRAL 864 (931)
T ss_pred HHHHHHHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeC---CCCCe---EEEEEEECCcCcHHHHHHHHH
Confidence 4677888888887543221111100000 011123444332 23333 13333 345899999998764
No 24
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=98.72 E-value=3.2e-07 Score=93.17 Aligned_cols=76 Identities=8% Similarity=0.154 Sum_probs=63.1
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEE-eecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhcc
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEI-ATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFS 126 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEI-aTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~s 126 (208)
.++.|+|.|||||+++|+.+|..+||.|+.|.| +|-+|.+-|+|+|++..+.+..++. ...+.|+++|..+|....
T Consensus 705 t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~---~r~~~i~~~L~~~L~~~~ 781 (895)
T PRK00275 705 TQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNP---ARIEQIREGLTEALRNPD 781 (895)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchH---HHHHHHHHHHHHHHcCCC
Confidence 556699999999999999999999999999998 7778999999999998766544332 246788888888886543
No 25
>PRK03381 PII uridylyl-transferase; Provisional
Probab=98.61 E-value=5.9e-07 Score=89.92 Aligned_cols=70 Identities=21% Similarity=0.252 Sum_probs=59.1
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
+++.|+|.|||||+++|+.+|..+|++|+.|.|.|.+|.+-|+|+|.+..+... . .+.|+++|..+|...
T Consensus 600 ~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~-~-------~~~l~~~L~~~L~~~ 669 (774)
T PRK03381 600 VEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPP-D-------AALLRQDLRRALDGD 669 (774)
T ss_pred EEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcc-h-------HHHHHHHHHHHHcCC
Confidence 567799999999999999999999999999999999999999999987654321 1 367788888887653
No 26
>PRK03059 PII uridylyl-transferase; Provisional
Probab=98.61 E-value=1.2e-06 Score=88.75 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=62.1
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEE-eecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhcc
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEI-ATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFS 126 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEI-aTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~s 126 (208)
.++.|+|.|||||+++|+.+|..+||+|+.|.| +|-.|.+-|+|+|.+..+. ..++ ...+.|+++|..+|....
T Consensus 679 ~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~----~~~~~i~~~l~~~l~~~~ 753 (856)
T PRK03059 679 LQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYR----DIINLVEHELAERLAEQA 753 (856)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChH----HHHHHHHHHHHHHHcCCC
Confidence 566799999999999999999999999999999 6789999999999985543 3232 257889999999986643
No 27
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.37 E-value=4.1e-06 Score=56.57 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=35.0
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCe
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGS 86 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGR 86 (208)
+.|.|+||||+|++|+++|.++++.+..+++.+.++.
T Consensus 3 v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~ 39 (66)
T PF01842_consen 3 VRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG 39 (66)
T ss_dssp EEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC
Confidence 4589999999999999999999999999999999985
No 28
>PRK04374 PII uridylyl-transferase; Provisional
Probab=98.34 E-value=1e-05 Score=82.32 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=60.0
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEee-cCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT-LEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaT-lGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
.++.|+|.|||||+++|+.+|..+||+|+.|.|.| -.|.+-|+|+|++..+.. .+ ....|+++|..+|...
T Consensus 691 ~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~---~~----~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 691 LEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA---DG----DPQRLAAALRQVLAGD 762 (869)
T ss_pred EEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC---hH----HHHHHHHHHHHHHcCC
Confidence 56779999999999999999999999999999976 799999999999866442 12 2455899999988764
No 29
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.14 E-value=2.6e-05 Score=56.39 Aligned_cols=66 Identities=15% Similarity=0.295 Sum_probs=51.7
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhh
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 124 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~ 124 (208)
+-+++.+.||||++++|+++|.++|..+...+++++||+..-.+.|.... + ..+.|+.+|.....+
T Consensus 3 ~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~-----~------~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 3 LVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPE-----D------SLERLESALEELAEE 68 (76)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESH-----H------HHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCc-----c------cHHHHHHHHHHHHHH
Confidence 44679999999999999999999999999999999999999888885531 1 256777787776443
No 30
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.97 E-value=4.1e-05 Score=56.22 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=51.6
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHH
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSV 121 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~v 121 (208)
++|.|.|+.||=.||.|++-+.||+|+|++++|-|...=-||+|......-.. .=+.+++.|.++
T Consensus 3 itvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~-------rW~lLK~RL~~~ 67 (69)
T cd04894 3 ITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKV-------RWDLLKNRLMSA 67 (69)
T ss_pred EEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcc-------cHHHHHHHHHhc
Confidence 45999999999999999999999999999999999999999999653311111 235666666543
No 31
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.83 E-value=0.00012 Score=52.55 Aligned_cols=50 Identities=18% Similarity=0.400 Sum_probs=40.3
Q ss_pred ceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeec--CCeeEEEEEEe
Q 037071 45 PYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL--EGSMKNIFVMA 94 (208)
Q Consensus 45 ~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTl--GGRaknVFyVt 94 (208)
.+.+.+.|-|.||||+|+||++++.+.++.|...++.+. ++.+.-.|.+.
T Consensus 4 ~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~ 55 (80)
T PF13291_consen 4 SFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVE 55 (80)
T ss_dssp -EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEE
T ss_pred EEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEE
Confidence 466778899999999999999999999999999999996 56666666664
No 32
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.81 E-value=0.00014 Score=52.17 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=51.0
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHh
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLD 123 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe 123 (208)
++|-+.||||+.++|+++|.+++..+...+.++++++..-.|.+.-..+ .+ .+.++++|....+
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~---~~-------~~~l~~~l~~l~~ 65 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS---AD-------SEALLKDLLFKAH 65 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC---CC-------HHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999888887754321 12 3566666666643
No 33
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00041 Score=70.63 Aligned_cols=76 Identities=20% Similarity=0.212 Sum_probs=63.2
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEE-eecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhcc
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEI-ATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFS 126 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEI-aTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~s 126 (208)
.++.|-|.|+|.|++.+..++...|++|+.|.| +|.-|++-|+|+|.+..|...+ + .....++++|-+++....
T Consensus 685 teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~----dr~~~~~~~l~~~l~s~~ 759 (867)
T COG2844 685 TEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-E----DRRAALRGELIEALLSGK 759 (867)
T ss_pred eEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-h----hHHHHHHHHHHHHHhcCC
Confidence 455699999999999999999999999999999 8889999999999998765544 3 246777888888886654
Q ss_pred cc
Q 037071 127 AT 128 (208)
Q Consensus 127 as 128 (208)
..
T Consensus 760 ~~ 761 (867)
T COG2844 760 AQ 761 (867)
T ss_pred CC
Confidence 43
No 34
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.70 E-value=0.00027 Score=50.37 Aligned_cols=67 Identities=13% Similarity=0.259 Sum_probs=47.1
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCe--eEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHH
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGS--MKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVL 122 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGR--aknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vL 122 (208)
+++.|.||||++++|++.|.++|+.|...+..|.+.. -.+.|+++-...... +. -.+.++++|...-
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~-----~~~~l~~~l~~l~ 70 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GT-----DLDALREELEELC 70 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CC-----CHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999832 234555443222221 11 1356666666653
No 35
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.69 E-value=0.00021 Score=50.80 Aligned_cols=66 Identities=20% Similarity=0.202 Sum_probs=45.9
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHH
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVL 122 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vL 122 (208)
+++.|.||||++++|++.|.++|..|...+..+.- ....|++.-....+..+. -.+.++++|...-
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~~~~~~~~~~~-----~~~~l~~~l~~l~ 67 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMRVEFELEGFDL-----SREALEAAFAPVA 67 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEEEEEEeCCCCC-----CHHHHHHHHHHHH
Confidence 46899999999999999999999999999998732 123477754332221111 1466777776653
No 36
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.63 E-value=0.00029 Score=51.09 Aligned_cols=66 Identities=15% Similarity=0.336 Sum_probs=49.1
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhh
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 124 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~ 124 (208)
+.+++.|.||||+.+.|++.|.++|..|......+.+++.--.+.+.. +. + ..+.|+++|...-++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~----~~-~------~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG----SW-D------AIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe----cc-c------cHHHHHHHHHHHHHH
Confidence 345799999999999999999999999999999998886533333322 11 1 146777777776433
No 37
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.62 E-value=0.00036 Score=51.35 Aligned_cols=67 Identities=9% Similarity=0.253 Sum_probs=49.6
Q ss_pred EEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhh
Q 037071 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 124 (208)
Q Consensus 49 rasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~ 124 (208)
.+++.|.||||++++|++.|.++|..|...+-.|.+++..-.+.+.-.. ...+ ++.++++|...-++
T Consensus 3 vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~--~~~~-------~~~L~~~l~~l~~~ 69 (88)
T cd04872 3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE--SNLD-------FAELQEELEELGKE 69 (88)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC--CCCC-------HHHHHHHHHHHHHH
Confidence 3569999999999999999999999999999999988765555553211 0112 45677777666443
No 38
>PRK00194 hypothetical protein; Validated
Probab=97.47 E-value=0.00064 Score=49.86 Aligned_cols=68 Identities=12% Similarity=0.260 Sum_probs=49.0
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhh
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 124 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~ 124 (208)
+.+++.|.||||++++|++.|.++|+.|...+-.+.+++..-.+.+.-. ....+ .+.|+++|...-+.
T Consensus 4 ~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~~-------~~~l~~~l~~l~~~ 71 (90)
T PRK00194 4 AIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKKD-------FAELKEELEELGKE 71 (90)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCCC-------HHHHHHHHHHHHHH
Confidence 4466999999999999999999999999999999988765554444211 10122 35677767665433
No 39
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.14 E-value=0.0027 Score=57.10 Aligned_cols=92 Identities=21% Similarity=0.244 Sum_probs=61.7
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEee--cCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT--LEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaT--lGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
+.++|-|.||||+.++|+++|.++|..+.....++ ++|. |++.-....+.... .++.|+++|...-+.-
T Consensus 7 ~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~----F~m~i~v~~~~~~~-----~~~~L~~~L~~l~~~l 77 (286)
T PRK06027 7 YVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGR----FFMRVEFEGDGLIF-----NLETLRADFAALAEEF 77 (286)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCe----EEEEEEEEeCCCCC-----CHHHHHHHHHHHHHHh
Confidence 45679999999999999999999999999999999 8883 66643221111111 1467777777664432
Q ss_pred ccchhhhcCCCCCCCcceeccccCCCC
Q 037071 126 SATEEFLLGAKLSNKRRRVSLFDSSLS 152 (208)
Q Consensus 126 sas~e~s~~~~~~~KR~R~s~~~ss~s 152 (208)
.. +.... ..+++.|+-+|-|.+.
T Consensus 78 ~l--~i~l~--~~~~~~ri~vl~Sg~g 100 (286)
T PRK06027 78 EM--DWRLL--DSAERKRVVILVSKED 100 (286)
T ss_pred CC--EEEEc--ccccCcEEEEEEcCCC
Confidence 21 11111 3557778888876553
No 40
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.08 E-value=0.0065 Score=42.32 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=35.7
Q ss_pred EEecCCCCCchHHHHHHHHhcCCeeEeeEEeecC-CeeEEEEEE
Q 037071 51 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE-GSMKNIFVM 93 (208)
Q Consensus 51 sVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlG-GRaknVFyV 93 (208)
.|-+.||||+|++|+.++.+.|..+...++.+.. +.+.-.|.+
T Consensus 3 ~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~v 46 (74)
T cd04887 3 RLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITV 46 (74)
T ss_pred EEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEE
Confidence 4789999999999999999999999998887763 555555555
No 41
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.98 E-value=0.007 Score=41.27 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=31.3
Q ss_pred EEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecC
Q 037071 47 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE 84 (208)
Q Consensus 47 ~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlG 84 (208)
|++ +-+.|+||+|.+|+++|.+.+..+......+..
T Consensus 2 yl~--i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~ 37 (79)
T cd04881 2 YLR--LTVKDKPGVLAKITGILAEHGISIESVIQKEAD 37 (79)
T ss_pred EEE--EEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccC
Confidence 455 889999999999999999999999988876653
No 42
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=96.97 E-value=0.00086 Score=67.25 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=39.0
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEe
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMA 94 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVt 94 (208)
++|.+.||||||+.|+++|- .+..|.|+|+|.-|+++||++
T Consensus 634 ~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~ 674 (693)
T PRK00227 634 LEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK 674 (693)
T ss_pred EEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence 45999999999999999999 889999999999999999997
No 43
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.0086 Score=40.20 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=28.6
Q ss_pred EEecCCCCCchHHHHHHHHhcCCeeEeeEEeec
Q 037071 51 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL 83 (208)
Q Consensus 51 sVcCdDRPGLLSDLtRALreL~L~ivRAEIaTl 83 (208)
.|.++|+||+|++|+++|.+.++.+........
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 377899999999999999999999987776543
No 44
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=96.95 E-value=0.0083 Score=60.33 Aligned_cols=104 Identities=12% Similarity=0.098 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHhhccCCCCCCCcceeEEEccccCCCCCceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCe
Q 037071 7 DDVKELDKNATEATEGFLRPTDIDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGS 86 (208)
Q Consensus 7 ~~VKELK~~Aae~~~g~~vPtEaDEV~Vd~~~~~~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGR 86 (208)
+.+++|=.+|...-++.+.|.......-+..... ++ ..+.. +-+.|+||+|+.+.-+|..+++.|.+|.|.+ +|.
T Consensus 511 ~Ll~~L~~~a~~~L~~~~~~~p~~~~~~~~~~~~-~~-~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~ 585 (693)
T PRK00227 511 QGLRIVCSRARARLTDIRPVAPMFAARSDIGLVE-ED-GFFTV--IWHGDYPRELVRVLALIAAKGWNILSARMVA-NGP 585 (693)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCcccccccc-cC-CeEEE--EecCCcccHHHHHHHHHHhcCceeeEeEEec-CCc
Confidence 3567888888876555443332110000001111 22 12222 3459999999999999999999999999999 999
Q ss_pred eEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHh
Q 037071 87 MKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLD 123 (208)
Q Consensus 87 aknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe 123 (208)
+.+.|.|....|..+ |+ ..++|++++.+.
T Consensus 586 ~~~~~~v~~~~~~~~-~~-------~~~~~~~~~~~~ 614 (693)
T PRK00227 586 WSAEFDVRANGPQDF-DP-------QEFLQAYKSGVY 614 (693)
T ss_pred eEEEEEEecCCCCCC-Ch-------HHHHHHHHHhhc
Confidence 999999987554333 33 456666666654
No 45
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.94 E-value=0.0026 Score=45.34 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=32.0
Q ss_pred EEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeec
Q 037071 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL 83 (208)
Q Consensus 49 rasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTl 83 (208)
.+.|-|.||+|+|+||+.+|.+.+..+...++.+-
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 34588999999999999999999999999999875
No 46
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.86 E-value=0.0038 Score=56.89 Aligned_cols=105 Identities=17% Similarity=0.248 Sum_probs=76.3
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhccc
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFSA 127 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~sa 127 (208)
..+.++|.|+||+.+.|+..|.+.|..|+.++=- +.....-|+++.......... ..+++++++..+.++.+.
T Consensus 8 ~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf--~D~~~g~FFmR~~f~~~~~~~-----~~~~l~~~f~~~a~~f~m 80 (287)
T COG0788 8 FILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF--DDPETGRFFMRVEFEGEGGPL-----DREALRAAFAPLAEEFGM 80 (287)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHcCCceeecccc--cccccCeEEEEEEEecCCCcc-----cHHHHHHHHHHHHHhhCc
Confidence 4566999999999999999999999999999877 667778899987664433322 368899999997665542
Q ss_pred chhhhcCCCCCCCcceeccccCCCCCC-CCcccccce
Q 037071 128 TEEFLLGAKLSNKRRRVSLFDSSLSSS-SDYLWHPRI 163 (208)
Q Consensus 128 s~e~s~~~~~~~KR~R~s~~~ss~ss~-~~~~~~~~~ 163 (208)
. ..-....+|.|+-+|=|--+-| .|.||--++
T Consensus 81 ~----~~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~ 113 (287)
T COG0788 81 D----WRLHDAAQRKRIAILVSKEDHCLGDLLYRWRI 113 (287)
T ss_pred e----eEEeccccCceEEEEEechHHHHHHHHHHHhc
Confidence 2 2223578888888886643333 567775443
No 47
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.72 E-value=0.0071 Score=54.56 Aligned_cols=94 Identities=13% Similarity=0.179 Sum_probs=59.6
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhccc
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFSA 127 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~sa 127 (208)
+.++|-|.||||+.++|++.|.++++.|...... +....+.|++.-......... .+.|+++|...-+.-..
T Consensus 8 ~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~--~~~~~~~F~m~~~~~~p~~~~------~~~L~~~L~~l~~~l~l 79 (286)
T PRK13011 8 FVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSF--DDRLSGRFFMRVEFHSEEGLD------EDALRAGFAPIAARFGM 79 (286)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeee--ecCCCCeEEEEEEEecCCCCC------HHHHHHHHHHHHHHhCc
Confidence 4467999999999999999999999999866654 334556777653221111111 46777777776443221
Q ss_pred chhhhcCCCCCCCcceeccccCCCCC
Q 037071 128 TEEFLLGAKLSNKRRRVSLFDSSLSS 153 (208)
Q Consensus 128 s~e~s~~~~~~~KR~R~s~~~ss~ss 153 (208)
+.... ...+..|+-+|-|.+.|
T Consensus 80 --~i~i~--~~~~~~ri~vl~Sg~g~ 101 (286)
T PRK13011 80 --QWELH--DPAARPKVLIMVSKFDH 101 (286)
T ss_pred --EEEEe--ecccCceEEEEEcCCcc
Confidence 11111 24455688888766433
No 48
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.64 E-value=0.017 Score=40.13 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=35.9
Q ss_pred EEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeec-CCeeEEEEEE
Q 037071 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL-EGSMKNIFVM 93 (208)
Q Consensus 49 rasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTl-GGRaknVFyV 93 (208)
++.+-+.||||+|++|.++|.+.+..+......+- ++.+.-.|-+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v 47 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISI 47 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEE
Confidence 45688999999999999999999999988876553 3555555555
No 49
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.64 E-value=0.0094 Score=53.94 Aligned_cols=100 Identities=20% Similarity=0.312 Sum_probs=61.7
Q ss_pred EEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccC-cCccChHHHHHHHHHHHHHHHHHHhhccc
Q 037071 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKE-LNFENTEVCQSLVSSVHQAIRSVLDKFSA 127 (208)
Q Consensus 49 rasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~g-g~~~D~~~~~~~~~sVrqAL~~vLe~~sa 127 (208)
.++|.|.||||+.+.|++.|.++|..|+...-.+ +...+.|++.-... ....+. ..+.++++|..+-++-+.
T Consensus 11 iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~--d~~~~~ffm~i~~~~~~~~~~-----~~~~l~~~l~~l~~~l~l 83 (289)
T PRK13010 11 VLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFD--DDESGRFFMRVSFHAQSAEAA-----SVDTFRQEFQPVAEKFDM 83 (289)
T ss_pred EEEEECCCCCCcHHHHHHHHHHCCCCEEeccccc--ccccCcEEEEEEEEcCCCCCC-----CHHHHHHHHHHHHHHhCC
Confidence 4679999999999999999999999999888862 23334455541111 000111 146788888887555332
Q ss_pred chhhhcCCCCCCCcceeccccCCCCC-CCCccc
Q 037071 128 TEEFLLGAKLSNKRRRVSLFDSSLSS-SSDYLW 159 (208)
Q Consensus 128 s~e~s~~~~~~~KR~R~s~~~ss~ss-~~~~~~ 159 (208)
+.+.. ...++.|+-+|-|-+.| ..+.++
T Consensus 84 --~~~i~--~~~~~~kiavl~Sg~g~nl~al~~ 112 (289)
T PRK13010 84 --QWAIH--PDGQRPKVVIMVSKFDHCLNDLLY 112 (289)
T ss_pred --eEEEe--cCCCCeEEEEEEeCCCccHHHHHH
Confidence 22222 23456688888765533 333443
No 50
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.60 E-value=0.0099 Score=39.58 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=37.7
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecC--CeeEEEEEE
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE--GSMKNIFVM 93 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlG--GRaknVFyV 93 (208)
+.+-++|+||+|++|+++|.+.++.+....+..-+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 34789999999999999999999999999998865 666666666
No 51
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=96.57 E-value=0.01 Score=53.51 Aligned_cols=93 Identities=22% Similarity=0.237 Sum_probs=59.7
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHH-HHhhcccc
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRS-VLDKFSAT 128 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~-vLe~~sas 128 (208)
+++.|.||||+.+.|++.|.++|..|+...-++.- -.+.|+++-......... ..+.++++|.. +-++.+.
T Consensus 3 itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~--~~~~F~mr~~v~~~~~~~-----~~~~l~~~l~~~~~~~~~l- 74 (280)
T TIGR00655 3 LLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDP--ETGRFFMRVEFQLEGFRL-----EESSLLAAFKSALAEKFEM- 74 (280)
T ss_pred EEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcC--CCCeEEEEEEEEeCCCCC-----CHHHHHHHHHHHHHHHhCC-
Confidence 56999999999999999999999999998887752 224566543222111111 14678888888 5433221
Q ss_pred hhhhcCCCCCCCcceeccccCCCCC
Q 037071 129 EEFLLGAKLSNKRRRVSLFDSSLSS 153 (208)
Q Consensus 129 ~e~s~~~~~~~KR~R~s~~~ss~ss 153 (208)
+.... ...++.|+-+|-|-+-|
T Consensus 75 -~i~l~--~~~~~~ki~vl~Sg~g~ 96 (280)
T TIGR00655 75 -TWELI--LADKLKRVAILVSKEDH 96 (280)
T ss_pred -EEEEe--cCCCCcEEEEEEcCCCh
Confidence 21111 34566788888665543
No 52
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=96.52 E-value=0.0087 Score=51.25 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=52.1
Q ss_pred EEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHH
Q 037071 47 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVL 122 (208)
Q Consensus 47 ~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vL 122 (208)
.+-+++-+.||||+.++|+++|.++|..+....++.+||...-++.|.... + .+..++.+|...-
T Consensus 8 ~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~-----~------~~~~le~~L~~l~ 72 (190)
T PRK11589 8 YLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSW-----N------AITLIESTLPLKG 72 (190)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCCh-----h------HHHHHHHHHHhhh
Confidence 355789999999999999999999999999999999999887777773221 1 2456666666653
No 53
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.51 E-value=0.027 Score=37.68 Aligned_cols=45 Identities=13% Similarity=0.316 Sum_probs=35.0
Q ss_pred EEecCCCCCchHHHHHHHHhcCCeeEeeEEeec-CCeeEEEEEEee
Q 037071 51 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL-EGSMKNIFVMAS 95 (208)
Q Consensus 51 sVcCdDRPGLLSDLtRALreL~L~ivRAEIaTl-GGRaknVFyVtd 95 (208)
.+.+.|+||+|.+|+++|.+.+..+......+. ++....+++..+
T Consensus 4 ~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 49 (72)
T cd04878 4 SVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE 49 (72)
T ss_pred EEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence 367899999999999999999999999888775 444444444433
No 54
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.26 E-value=0.036 Score=37.27 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=31.0
Q ss_pred EEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeec
Q 037071 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL 83 (208)
Q Consensus 49 rasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTl 83 (208)
++.+.+.|+||.|++|.+.|.+.+..+......+-
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 34588999999999999999999999998887765
No 55
>PRK08577 hypothetical protein; Provisional
Probab=96.14 E-value=0.082 Score=42.15 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=40.1
Q ss_pred cceeEEEccccCCCCCceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecC
Q 037071 29 IDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE 84 (208)
Q Consensus 29 aDEV~Vd~~~~~~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlG 84 (208)
..|+.+.+-....+ ..+.+.+-+.||||+|++|+++|.+.+..+......+..
T Consensus 41 ~~~~~~~~~~~~~k---~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 41 KKEIHLEPIALPGK---KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred CCEEEEEEcCCCCc---cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 33666665554322 235555999999999999999999999999988877754
No 56
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.12 E-value=0.053 Score=37.59 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=37.5
Q ss_pred EEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEee
Q 037071 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMAS 95 (208)
Q Consensus 49 rasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd 95 (208)
+.+|-.+|+||.|++|+.+|.+.++.|...-+..-++ +.+|.+..
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE--FGILRLIV 47 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEE
Confidence 4568899999999999999999999999988877666 46666633
No 57
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.11 E-value=0.056 Score=34.50 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=32.1
Q ss_pred EEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCe
Q 037071 51 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGS 86 (208)
Q Consensus 51 sVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGR 86 (208)
.+.|.|+||.+++|++.|...++.+...++...++.
T Consensus 2 ~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~ 37 (71)
T cd04876 2 RVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDG 37 (71)
T ss_pred EEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCC
Confidence 477999999999999999999999999998877643
No 58
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.07 E-value=0.041 Score=36.78 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=33.7
Q ss_pred EEecCCCCCchHHHHHHHHhcCCeeEeeEEeec--CCeeEEEEEE
Q 037071 51 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL--EGSMKNIFVM 93 (208)
Q Consensus 51 sVcCdDRPGLLSDLtRALreL~L~ivRAEIaTl--GGRaknVFyV 93 (208)
.+.++||||.|.+|+++|.+.+..+........ ++.+.-+|.+
T Consensus 3 ~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v 47 (71)
T cd04903 3 IVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV 47 (71)
T ss_pred EEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence 478999999999999999999999998877653 3444434444
No 59
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.01 E-value=0.075 Score=36.60 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=35.6
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecC--CeeEEEEEEe
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE--GSMKNIFVMA 94 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlG--GRaknVFyVt 94 (208)
++|.++|+||-|.+|+++|.++++.+....+.... ....-.|.+.
T Consensus 4 ~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 4 LYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 45889999999999999999999999988776652 2344456664
No 60
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.85 E-value=0.088 Score=37.83 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=35.3
Q ss_pred EecCCCCCchHHHHHHHHhcCCeeEeeEEeecCC-eeEEEEEEee
Q 037071 52 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEG-SMKNIFVMAS 95 (208)
Q Consensus 52 VcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGG-RaknVFyVtd 95 (208)
+..+|+||-|++|...|+++++.+.+-+....+. ...-+|||..
T Consensus 6 ~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 6 FTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 5668999999999999999999999888776654 3445677743
No 61
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.63 E-value=0.059 Score=32.45 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=30.9
Q ss_pred EEecCCCCCchHHHHHHHHhcCCeeEeeEEeecC
Q 037071 51 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE 84 (208)
Q Consensus 51 sVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlG 84 (208)
++.|.|+||++++|.++|...++.+.........
T Consensus 2 ~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 2 TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred EEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 4789999999999999999999999999987764
No 62
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=95.40 E-value=0.062 Score=35.84 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=37.0
Q ss_pred EEecCCCCCchHHHHHHHHhcCCeeEeeEEeecC-CeeEEEEEEee
Q 037071 51 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE-GSMKNIFVMAS 95 (208)
Q Consensus 51 sVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlG-GRaknVFyVtd 95 (208)
++-+.|+||.|++++++|.+.+..+...-+...+ +++.-.|.+.+
T Consensus 2 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 3678999999999999999999999877776655 77777777743
No 63
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.33 E-value=0.04 Score=41.63 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=46.4
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEe--ecCCeeEEE--EEEeeccCcCccChHHHHHHHHHHHHHH
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA--TLEGSMKNI--FVMASCKELNFENTEVCQSLVSSVHQAI 118 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIa--TlGGRaknV--FyVtd~~gg~~~D~~~~~~~~~sVrqAL 118 (208)
+++|.--||-.++|+|-||+.|+..|-+|||. ..++|---| |.+.+. ++-......++..++.|+..|
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~-~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH-DRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC-CccccchHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999994 345554444 333332 222233344556666666654
No 64
>PRK07334 threonine dehydratase; Provisional
Probab=95.13 E-value=0.16 Score=47.28 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=38.8
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeec-----CCeeEEEEEE
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL-----EGSMKNIFVM 93 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTl-----GGRaknVFyV 93 (208)
+.+.+.|-+.||||+|+||+.+|.+.+..|....+.+. ++.+.-.|.|
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i 377 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVI 377 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEE
Confidence 44677799999999999999999999999999988765 4554444444
No 65
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=94.48 E-value=0.038 Score=37.71 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=33.4
Q ss_pred EEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEE
Q 037071 51 SLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVM 93 (208)
Q Consensus 51 sVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyV 93 (208)
-+.++||||+|.+|+.+|.+.+..+......+-++.+.-.|-+
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 3678999999999999999999999777666555555444443
No 66
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=94.46 E-value=0.16 Score=43.47 Aligned_cols=70 Identities=10% Similarity=0.183 Sum_probs=49.7
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCC--eeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHh
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEG--SMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLD 123 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGG--RaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe 123 (208)
+.++|...||||+.++|+++|.+.++.|..=+-.|++. .-...|.+.-... -+.+.. ++.++++|...-+
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~-lP~~~~-----~~~L~~~l~~l~~ 167 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAH-SPASQD-----AANIEQAFKALCT 167 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEE-cCCCCC-----HHHHHHHHHHHHH
Confidence 66779999999999999999999999998888888875 4445565543221 122221 4667776666643
No 67
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.35 E-value=0.27 Score=34.39 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=29.2
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeec
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL 83 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTl 83 (208)
.++--+||||-|++|.++|.++|..|..-...-.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 3567799999999999999999999988766554
No 68
>PRK04435 hypothetical protein; Provisional
Probab=94.12 E-value=0.45 Score=38.90 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=37.9
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeec-CCeeEEEEEE
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL-EGSMKNIFVM 93 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTl-GGRaknVFyV 93 (208)
..+.+.+-++||||+|++|.++|.+.+..+..-...+- +|.+.=.|-+
T Consensus 68 r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tV 116 (147)
T PRK04435 68 KIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISI 116 (147)
T ss_pred cEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEE
Confidence 34667799999999999999999999999988776543 4555555555
No 69
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.53 E-value=0.67 Score=35.24 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=37.9
Q ss_pred ceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCee-EEEEEEeeccC
Q 037071 45 PYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSM-KNIFVMASCKE 98 (208)
Q Consensus 45 ~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRa-knVFyVtd~~g 98 (208)
.+.+- +...|+||-|+++-.+|...++.+.+=|=--..++- .=.||| |+.+
T Consensus 14 ktsli--f~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg 65 (90)
T cd04931 14 VISLI--FSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDK 65 (90)
T ss_pred cEEEE--EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEc
Confidence 34455 566999999999999999999999988775555443 346666 4454
No 70
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.11 E-value=0.74 Score=32.40 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=33.8
Q ss_pred EecCCCCCchHHHHHHHHhcCCeeEeeEEeecCC-eeEEEEEEee
Q 037071 52 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEG-SMKNIFVMAS 95 (208)
Q Consensus 52 VcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGG-RaknVFyVtd 95 (208)
+..+|+||-|+++-.+|+++++.+.+-|=--..+ ...-.||+.-
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~ 48 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF 48 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence 4568999999999999999999999886654444 4455666643
No 71
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.00 E-value=0.87 Score=46.16 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=37.2
Q ss_pred ceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCe
Q 037071 45 PYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGS 86 (208)
Q Consensus 45 ~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGR 86 (208)
.+.+.+.|.+.||+|||.||+.+|.+.+..|..+.+.+-.++
T Consensus 624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~ 665 (702)
T PRK11092 624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGR 665 (702)
T ss_pred eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCC
Confidence 356777899999999999999999999999999999887643
No 72
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=92.62 E-value=0.73 Score=47.13 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=40.4
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeec--CCeeEEEEEE
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL--EGSMKNIFVM 93 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTl--GGRaknVFyV 93 (208)
+.+.+.|.+.||+|||.||+.+|.+.++.|....+.+- ++.+...|-|
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~i 714 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTI 714 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEE
Confidence 55777899999999999999999999999999999876 4555555555
No 73
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.59 E-value=1.7 Score=29.78 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=28.1
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeE
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAE 79 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAE 79 (208)
+++.+..+|+||.|.+|.++|.+.+..+....
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~ 33 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVL 33 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEE
Confidence 35668899999999999999999999998664
No 74
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=92.43 E-value=0.4 Score=32.75 Aligned_cols=42 Identities=12% Similarity=0.301 Sum_probs=34.1
Q ss_pred EecCCCCCchHHHHHHHHhcCCeeEeeEEee--cCCeeEEEEEE
Q 037071 52 LCCNYKPGLLSDLRRVLEALHLSIVKAEIAT--LEGSMKNIFVM 93 (208)
Q Consensus 52 VcCdDRPGLLSDLtRALreL~L~ivRAEIaT--lGGRaknVFyV 93 (208)
+...|+||.+++|+++|.+.++.+..-.... .++++.-+|-+
T Consensus 4 v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 4 VRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 6789999999999999999999997766544 46676666665
No 75
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=92.21 E-value=0.89 Score=38.03 Aligned_cols=63 Identities=14% Similarity=0.310 Sum_probs=45.9
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecC--CeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHh
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE--GSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLD 123 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlG--GRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe 123 (208)
+++..+|+||.|++|+..|+..|..|.+--+..-+ |..+-+|.|.. |. ..++.|.++|...++
T Consensus 4 isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~-------d~----~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 4 LSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG-------DD----KVLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC-------CH----HHHHHHHHHHhcCcc
Confidence 45888999999999999999999999877676555 44444555522 22 146777888877665
No 76
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.73 E-value=0.57 Score=31.23 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=28.0
Q ss_pred EecCCCCCchHHHHHHHHhcCCeeEeeEEeecC
Q 037071 52 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE 84 (208)
Q Consensus 52 VcCdDRPGLLSDLtRALreL~L~ivRAEIaTlG 84 (208)
+.-+||||-|++|..+|.+.++.+.......-+
T Consensus 4 v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 4 VEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 567899999999999999999999877664443
No 77
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=91.56 E-value=1.2 Score=37.92 Aligned_cols=64 Identities=9% Similarity=0.233 Sum_probs=47.4
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEee--cCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhh
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT--LEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 124 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaT--lGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~ 124 (208)
+++-.+||||+|++|+..|...|..|..=.... ..|-.+-++.+.. |. ..++.|+++|....+-
T Consensus 5 isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~-------~~----~~ieqL~kQL~KLidV 70 (174)
T CHL00100 5 LSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG-------DD----RTIEQLTKQLYKLVNI 70 (174)
T ss_pred EEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC-------CH----HHHHHHHHHHHHHhHh
Confidence 458889999999999999999999988777755 5566666666632 11 1267778787777664
No 78
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=91.41 E-value=1.1 Score=45.15 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=36.3
Q ss_pred ceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecC
Q 037071 45 PYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE 84 (208)
Q Consensus 45 ~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlG 84 (208)
.+.+.+.|.+.||+|+|.||+.+|.+.+..|....+.+..
T Consensus 608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~ 647 (683)
T TIGR00691 608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYG 647 (683)
T ss_pred eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcC
Confidence 3567778999999999999999999999999999998874
No 79
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=90.58 E-value=1.7 Score=31.18 Aligned_cols=45 Identities=13% Similarity=0.283 Sum_probs=34.6
Q ss_pred EecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCe-eEEEEEEeecc
Q 037071 52 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGS-MKNIFVMASCK 97 (208)
Q Consensus 52 VcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGR-aknVFyVtd~~ 97 (208)
+...|+||-|+++-..|...++.+++=|=--..++ -.-.||| |+.
T Consensus 5 f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~ 50 (74)
T cd04904 5 FSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCE 50 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEE
Confidence 44588999999999999999999998877555544 3456666 444
No 80
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=90.40 E-value=1.8 Score=36.41 Aligned_cols=63 Identities=16% Similarity=0.341 Sum_probs=44.5
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecC--CeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHh
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE--GSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLD 123 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlG--GRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe 123 (208)
.++.-+|+||.|++|+..|...|..|.+--+.--. |..+-+|.|.. |. ..++.|.+.|...++
T Consensus 5 IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~-------~~----~~i~qi~kQl~KLid 69 (161)
T PRK11895 5 LSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG-------DE----QVIEQITKQLNKLID 69 (161)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC-------CH----HHHHHHHHHHhcccc
Confidence 45889999999999999999999999776554443 44555555522 22 136777777776655
No 81
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=89.89 E-value=0.71 Score=35.86 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=38.9
Q ss_pred EEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEE
Q 037071 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVM 93 (208)
Q Consensus 49 rasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyV 93 (208)
-.+|...||||+-++|+++|.+++..|+.-+=+-+-|.--=.+.|
T Consensus 5 vITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV 49 (90)
T COG3830 5 VITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLV 49 (90)
T ss_pred EEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEE
Confidence 356999999999999999999999999998888888876666666
No 82
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.55 E-value=1.9 Score=31.45 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=34.6
Q ss_pred EecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCe-eEEEEEEeecc
Q 037071 52 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGS-MKNIFVMASCK 97 (208)
Q Consensus 52 VcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGR-aknVFyVtd~~ 97 (208)
+...|+||-|+++-..|...++.+.+=|=--..+. -.-.||| |+.
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e 50 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCE 50 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEE
Confidence 44589999999999999999999998877555444 4456676 444
No 83
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=86.94 E-value=3.3 Score=42.28 Aligned_cols=49 Identities=14% Similarity=0.300 Sum_probs=42.3
Q ss_pred ceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEE
Q 037071 45 PYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVM 93 (208)
Q Consensus 45 ~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyV 93 (208)
.+.+.+.|...||+|||.||+++|...+..+....+-+.+++.-.+.+-
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~ 673 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFT 673 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEE
Confidence 4678888999999999999999999999999999998877776665554
No 84
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=85.87 E-value=1.2 Score=38.50 Aligned_cols=63 Identities=14% Similarity=0.285 Sum_probs=51.4
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHH
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSV 121 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~v 121 (208)
+-+++-..|||||.-.|+|+..+.|-.+.-+.++++|+-..-+.-+.... | .+..|+++|-..
T Consensus 6 LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~-----d------av~~le~~l~~l 68 (176)
T COG2716 6 LVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSW-----D------AVTLLEATLPLL 68 (176)
T ss_pred EEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCH-----H------HHHHHHHHhhcc
Confidence 45668899999999999999999999999999999999988887775433 1 256666666554
No 85
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=85.47 E-value=2.1 Score=36.93 Aligned_cols=52 Identities=13% Similarity=0.294 Sum_probs=35.3
Q ss_pred CCCCcceeEEEccccCC--CCCceEEEEEEecCCCCCchHHHHHHHHhcCCeeE
Q 037071 25 RPTDIDEVKVEQQEDGL--DGAPYSIKASLCCNYKPGLLSDLRRVLEALHLSIV 76 (208)
Q Consensus 25 vPtEaDEV~Vd~~~~~~--~g~~~~irasVcCdDRPGLLSDLtRALreL~L~iv 76 (208)
++.|.|=..+-...++. ......+.+.|...||||++.++|+.|..+|+.+.
T Consensus 68 l~~~~~L~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie 121 (176)
T COG2716 68 LGAELDLLVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIE 121 (176)
T ss_pred ccccCCeEEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchh
Confidence 44444444444444330 11124577789999999999999999999998664
No 86
>PRK06349 homoserine dehydrogenase; Provisional
Probab=84.42 E-value=7.7 Score=36.63 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=37.5
Q ss_pred ceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeec
Q 037071 45 PYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASC 96 (208)
Q Consensus 45 ~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~ 96 (208)
.+|++ +..+|+||.|++|+..|.+.+.++.+-.-....+-...++++|+.
T Consensus 348 ~yylR--l~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~ 397 (426)
T PRK06349 348 KYYLR--LLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE 397 (426)
T ss_pred eEEEE--EEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence 46788 888999999999999999999987755333333345567777763
No 87
>TIGR02258 2_5_ligase 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles.
Probab=82.65 E-value=23 Score=28.54 Aligned_cols=118 Identities=11% Similarity=0.189 Sum_probs=62.9
Q ss_pred hhHhhHHHHHHHHHHh-hccCCCCCCCcceeEEEccccCCCCCceEEEEEEecCCCCCchHHHHHHHHhcCCe---eEee
Q 037071 3 EKRVDDVKELDKNATE-ATEGFLRPTDIDEVKVEQQEDGLDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLS---IVKA 78 (208)
Q Consensus 3 AeVI~~VKELK~~Aae-~~~g~~vPtEaDEV~Vd~~~~~~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~---ivRA 78 (208)
.++.+++.++++.... ...+-.+|.+. ..|-+-...+--+.-+.+|.++|.+.... +.-.
T Consensus 11 ~~~~~~l~~~~~~l~~~~~~~r~~~~~~----------------~HiTL~flg~~~~~~~~~l~~~l~~~~~~~f~l~l~ 74 (179)
T TIGR02258 11 PEIREQLSRIQRKLKSPLDGIKWVPPEN----------------LHITLKFLGEVDEEQVEELEDALAKIAEPPFTLKLE 74 (179)
T ss_pred HHHHHHHHHHHHHhhccCCCcEECChHH----------------CEEEEEEccCCCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 3577778888776653 12222333331 12222233333456677788888776443 3334
Q ss_pred EEeecCCe-eEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhcccchhhhcCCCCCCCcceeccccCCCCCCCCc
Q 037071 79 EIATLEGS-MKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFSATEEFLLGAKLSNKRRRVSLFDSSLSSSSDY 157 (208)
Q Consensus 79 EIaTlGGR-aknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~sas~e~s~~~~~~~KR~R~s~~~ss~ss~~~~ 157 (208)
.+.++++. -..|+|+.-.. +. .+..++++|...+... | .+ .+..
T Consensus 75 ~~~~F~~~~~~~vl~l~~~~-----~~-----~L~~L~~~l~~~~~~~--------g----~~-------------~~~~ 119 (179)
T TIGR02258 75 GIGVFGNPKRPRVLWAGVEQ-----SE-----ELTQLHADLERELAKL--------G----FS-------------KEER 119 (179)
T ss_pred eeeeCCCCCCCeEEEEeeCC-----CH-----HHHHHHHHHHHHHHHc--------C----CC-------------CCCC
Confidence 44555552 24678874421 22 2566777777665331 1 11 1223
Q ss_pred ccccceeeecccch
Q 037071 158 LWHPRITISRLRPS 171 (208)
Q Consensus 158 ~~~~~~~~~~~~~~ 171 (208)
-|+|.|||.|..+.
T Consensus 120 ~f~PHiTlar~~~~ 133 (179)
T TIGR02258 120 PFTPHITLARKKSG 133 (179)
T ss_pred CcCCCEEEEEecCC
Confidence 48999999987654
No 88
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=82.54 E-value=3.2 Score=40.14 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=37.3
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEee
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMAS 95 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd 95 (208)
+|++|.|.||.|+-.||-..|...++.+..-||...| ..|+..
T Consensus 1 mrl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~-----~~~~~~ 43 (520)
T PRK10820 1 MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG-----RIYLNF 43 (520)
T ss_pred CeEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC-----eEEEeC
Confidence 4678999999999999999999999999999997774 266643
No 89
>PRK06382 threonine dehydratase; Provisional
Probab=82.46 E-value=8.7 Score=35.88 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=31.9
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEe
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA 81 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIa 81 (208)
..++..|--+||||-|.+|++.|.+++..|++-+..
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 457777999999999999999999999999987764
No 90
>PRK11899 prephenate dehydratase; Provisional
Probab=81.95 E-value=10 Score=34.33 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=39.6
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCe-eEEEEEEeeccCcCccCh
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGS-MKNIFVMASCKELNFENT 104 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGR-aknVFyVtd~~gg~~~D~ 104 (208)
+.+- +...|+||.|+++-.+|...|+.+++=|===.+++ =.=+||+ |.. +...|+
T Consensus 195 tsl~--~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~e-g~~~d~ 250 (279)
T PRK11899 195 TTFV--FRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIE-GHPEDR 250 (279)
T ss_pred EEEE--EEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEE-CCCCCH
Confidence 4444 45589999999999999999999998887544444 4567777 434 344444
No 91
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.77 E-value=13 Score=25.85 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=29.6
Q ss_pred EecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEe
Q 037071 52 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMA 94 (208)
Q Consensus 52 VcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVt 94 (208)
|.-+||||=|.++.++|.+ +..|+.-+-.-.+-....+++.-
T Consensus 3 v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~i 44 (68)
T cd04885 3 VTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGI 44 (68)
T ss_pred EECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEE
Confidence 5668999999999999998 88887655444333334455443
No 92
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=80.66 E-value=9.1 Score=28.43 Aligned_cols=44 Identities=9% Similarity=0.251 Sum_probs=35.1
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEee--cCCeeEEEEEE
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT--LEGSMKNIFVM 93 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaT--lGGRaknVFyV 93 (208)
.++-.+|+||.|+.+++.|+.-|..|..=-++- -++..+=++.|
T Consensus 6 lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v 51 (76)
T PRK11152 6 LTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV 51 (76)
T ss_pred EEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE
Confidence 467889999999999999999988777655544 56666666776
No 93
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=77.49 E-value=9.1 Score=33.57 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=39.9
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChH
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTE 105 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~ 105 (208)
+++-++++||.|++||-.+.+.|-.|+-|.--..++--+...|+.- .+.+|.+
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi---Egi~d~e 57 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI---EGIDDFE 57 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe---eCCCCHH
Confidence 5688999999999999999999999999886655553355566632 2344554
No 94
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.45 E-value=13 Score=29.40 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=37.5
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeE-EEEEEeeccC
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMK-NIFVMASCKE 98 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRak-nVFyVtd~~g 98 (208)
+.+- +...|+||-|+++-..|...|+.+++=|=--..++-- =.||| |+.+
T Consensus 42 tSli--fsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg 92 (115)
T cd04930 42 ATLL--FSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEV 92 (115)
T ss_pred EEEE--EEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEe
Confidence 3444 4559999999999999999999999888776655544 35555 5543
No 95
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=76.25 E-value=15 Score=25.89 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=31.6
Q ss_pred CCCCchHHHHHHHHhcCCeeEeeEEee--cCCeeEEEEEEee
Q 037071 56 YKPGLLSDLRRVLEALHLSIVKAEIAT--LEGSMKNIFVMAS 95 (208)
Q Consensus 56 DRPGLLSDLtRALreL~L~ivRAEIaT--lGGRaknVFyVtd 95 (208)
|+||.|..|+..|+--|..+..=.+.. -++..+=++.+.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~ 42 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG 42 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee
Confidence 789999999999999999888777766 6666666666643
No 96
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=75.46 E-value=21 Score=32.69 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=30.2
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEE
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEI 80 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEI 80 (208)
..++.+|--+||||-|++|.+.+.+.+..|+.-.-
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~ 338 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDH 338 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEe
Confidence 55677799999999999999999999998886543
No 97
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=71.49 E-value=26 Score=26.11 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=27.5
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEe
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA 81 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIa 81 (208)
.++-.+|+||+|+.++.+|+.-|..|..=-++
T Consensus 5 isi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg 36 (76)
T PRK06737 5 FSLVIHNDPSVLLRISGIFARRGYYISSLNLN 36 (76)
T ss_pred EEEEEecCCCHHHHHHHHHhccCcceEEEEec
Confidence 45788999999999999999999988865554
No 98
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=71.34 E-value=1 Score=32.07 Aligned_cols=15 Identities=60% Similarity=1.028 Sum_probs=13.1
Q ss_pred CCCcccccceeeecc
Q 037071 154 SSDYLWHPRITISRL 168 (208)
Q Consensus 154 ~~~~~~~~~~~~~~~ 168 (208)
+-|||.||.|.||..
T Consensus 32 sYDYllHPAiSISKi 46 (56)
T PF13978_consen 32 SYDYLLHPAISISKI 46 (56)
T ss_pred cceeeecchhhHHHH
Confidence 579999999999864
No 99
>PRK08818 prephenate dehydrogenase; Provisional
Probab=69.86 E-value=14 Score=34.76 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=32.5
Q ss_pred EecC-CCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEee
Q 037071 52 LCCN-YKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMAS 95 (208)
Q Consensus 52 VcCd-DRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd 95 (208)
+.-+ |+||-|++|..+|...++.+.+=|+ ....-=...|||.-
T Consensus 300 ~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~ 343 (370)
T PRK08818 300 VYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF 343 (370)
T ss_pred EECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence 3335 9999999999999999999999999 22222333488843
No 100
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=69.77 E-value=11 Score=26.33 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=22.2
Q ss_pred EEEEecC----CCCCchHHHHHHHHhcCCeeE
Q 037071 49 KASLCCN----YKPGLLSDLRRVLEALHLSIV 76 (208)
Q Consensus 49 rasVcCd----DRPGLLSDLtRALreL~L~iv 76 (208)
.++|-++ |.||.++.+.++|.+.++.+.
T Consensus 8 ~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~ 39 (65)
T PF13840_consen 8 KISVVGPGLRFDVPGVAAKIFSALAEAGINIF 39 (65)
T ss_dssp EEEEEEECGTTTSHHHHHHHHHHHHHTTS-EC
T ss_pred EEEEEccccCCCcccHHHHHHHHHHHCCCCEE
Confidence 3445555 799999999999999999775
No 101
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=69.36 E-value=8.6 Score=37.52 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=30.9
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEe
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA 81 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIa 81 (208)
++++|.|+||.||.-+|-..|-.-++.+-.-||.
T Consensus 1 MRleV~cedRlGltrelLdlLv~r~idl~~iEid 34 (511)
T COG3283 1 MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID 34 (511)
T ss_pred CceEEEehhhhchHHHHHHHHHhcccCccceeec
Confidence 4677999999999999999999999999999993
No 102
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=68.35 E-value=33 Score=31.46 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=40.1
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCee-EEEEEEeeccCcCccCh
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSM-KNIFVMASCKELNFENT 104 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRa-knVFyVtd~~gg~~~D~ 104 (208)
+.+- +...|+||.|+++-.+|...|+.+.|=|=-=.+++- .=+||| |.. ++..|+
T Consensus 195 Tsl~--f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~e-g~~~~~ 250 (279)
T COG0077 195 TSLI--FSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIE-GHIDDP 250 (279)
T ss_pred EEEE--EEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEe-cCcCcH
Confidence 4444 555699999999999999999999999986566554 455555 555 444443
No 103
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=68.17 E-value=1.9 Score=22.68 Aligned_cols=8 Identities=63% Similarity=0.978 Sum_probs=6.5
Q ss_pred hcCCCCCc
Q 037071 183 RLPTMGGS 190 (208)
Q Consensus 183 ~~~~~~~~ 190 (208)
..|||||.
T Consensus 3 gTPTMGGi 10 (13)
T PF10555_consen 3 GTPTMGGI 10 (13)
T ss_pred CCccceeE
Confidence 46999995
No 104
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=66.65 E-value=77 Score=35.53 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=55.1
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEee---EEeecCCe--eEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHH
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKA---EIATLEGS--MKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVL 122 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRA---EIaTlGGR--aknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vL 122 (208)
++..+.....|..||++.-+|..+||++... +|..-+|+ -.+-|+|....+... +.. ...+.+.+++..+.
T Consensus 490 ~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~-~~~---~~~~~~~~a~~~v~ 565 (1528)
T PF05088_consen 490 LRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDAL-DLD---DIRERFEEAFEAVW 565 (1528)
T ss_pred EEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccc-cHH---HHHHHHHHHHHHHh
Confidence 4444888999999999999999999999987 45554333 567788876554332 222 35677888888887
Q ss_pred hhcccc
Q 037071 123 DKFSAT 128 (208)
Q Consensus 123 e~~sas 128 (208)
.....+
T Consensus 566 ~g~~e~ 571 (1528)
T PF05088_consen 566 NGRAEN 571 (1528)
T ss_pred cCCCCC
Confidence 665443
No 105
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=65.83 E-value=35 Score=32.29 Aligned_cols=64 Identities=16% Similarity=0.296 Sum_probs=43.4
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEe-ecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHH
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA-TLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSV 121 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIa-TlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~v 121 (208)
+.+- +.-.|+||.|+++-.+|...|+.+++=|== +-++-=.=+||| |.. +...|+ .+++||..+
T Consensus 298 tsl~--~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~e-g~~~d~--------~~~~aL~~l 362 (386)
T PRK10622 298 TTLL--MATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQ-ANLRSA--------EMQKALKEL 362 (386)
T ss_pred EEEE--EEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEe-CCCCCH--------HHHHHHHHH
Confidence 4444 444799999999999999999999987765 333335667777 434 344443 345555554
No 106
>PF13563 2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB: 1IUH_A.
Probab=65.45 E-value=45 Score=25.44 Aligned_cols=84 Identities=17% Similarity=0.288 Sum_probs=47.0
Q ss_pred ecCCC-CCchHHHHHHHHhc-CCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhcccchh
Q 037071 53 CCNYK-PGLLSDLRRVLEAL-HLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFSATEE 130 (208)
Q Consensus 53 cCdDR-PGLLSDLtRALreL-~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~sas~e 130 (208)
-+++. ..+...|.+++... ...+.-..+.+++++-. |+|+.... +. .+..|+++|...+.......+
T Consensus 35 ~~~~~~~~~~~~l~~~~~~~~~f~l~l~~~~~F~~~~~-vi~l~~~~-----~~-----~L~~L~~~l~~~~~~~~~~~~ 103 (153)
T PF13563_consen 35 DIDDSLDELVEALARLAAGFPPFELRLDGFGSFPGKGR-VIFLNVEP-----SP-----ELEALHRALREALRPFGFKQD 103 (153)
T ss_dssp E--GGGHHHHHHHHHHHHHS--EEEEEEEEEEESSSSS-SEEEEEEE------H-----HHHHHHHHHHHHHHHHHGGGG
T ss_pred cccccHHHHHHHHHHHHccCCCeEEEEccEEEcCCCCC-EEEEEcCC-----CH-----HHHHHHHHHHHHHHHcCCccc
Confidence 34444 66666666666655 36777777888876444 78885511 22 367788888877755422111
Q ss_pred hhcCCCCCCCcceeccccCCCCCCCCcccccceeeecccch
Q 037071 131 FLLGAKLSNKRRRVSLFDSSLSSSSDYLWHPRITISRLRPS 171 (208)
Q Consensus 131 ~s~~~~~~~KR~R~s~~~ss~ss~~~~~~~~~~~~~~~~~~ 171 (208)
. + .-|+|-|||.+..+.
T Consensus 104 -~-------~----------------~~~~PHiTia~~~~~ 120 (153)
T PF13563_consen 104 -S-------Y----------------RPFRPHITIARRLSP 120 (153)
T ss_dssp -G-------G----------------S----EEEEEEESS-
T ss_pred -c-------C----------------CCcceEEEEeccCCc
Confidence 1 0 679999999987654
No 107
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.47 E-value=55 Score=23.79 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=25.2
Q ss_pred EecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEE
Q 037071 52 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVM 93 (208)
Q Consensus 52 VcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyV 93 (208)
+.-+||||=|.++.++|. +..|...+-.-.+.....++++
T Consensus 6 v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ 45 (85)
T cd04906 6 VTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVG 45 (85)
T ss_pred EecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEE
Confidence 667999999999999998 5555533333333223334443
No 108
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=62.47 E-value=45 Score=25.54 Aligned_cols=64 Identities=8% Similarity=0.087 Sum_probs=40.9
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCC--eeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHh
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEG--SMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLD 123 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGG--RaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe 123 (208)
.++--+|+||.|+.|+..|..-|..|..=-++.-.. --+=++.+.. .|.. .++.|.+.|....+
T Consensus 5 isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~------~d~~----~ieqI~kQL~Klid 70 (84)
T PRK13562 5 LKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI------QDDT----SLHILIKKLKQQIN 70 (84)
T ss_pred EEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC------CCHH----HHHHHHHHHhCCcc
Confidence 457889999999999999999998887665543332 2333444421 1221 35666666665543
No 109
>PRK08198 threonine dehydratase; Provisional
Probab=60.90 E-value=77 Score=29.35 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=30.3
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEe
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA 81 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIa 81 (208)
..++.+|.-+||||-|++|-..+.+.+..|..-...
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 456777999999999999999999999988765543
No 110
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=60.64 E-value=51 Score=22.44 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=33.0
Q ss_pred CCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHH
Q 037071 56 YKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAI 118 (208)
Q Consensus 56 DRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL 118 (208)
+.||+++++-.+|.+.++.+. -++| .-.++-++.+.+ |. ...+..|++++
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~--~~~~---Se~~is~~v~~~-----~~---~~av~~Lh~~f 62 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEIL--QTAD---SHTTISCLVSED-----DV---KEAVNALHEAF 62 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEE--EEEc---CccEEEEEEcHH-----HH---HHHHHHHHHHh
Confidence 789999999999999999995 4555 334553332321 11 13566777665
No 111
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.38 E-value=50 Score=22.28 Aligned_cols=50 Identities=14% Similarity=0.277 Sum_probs=32.3
Q ss_pred CCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHH
Q 037071 56 YKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAI 118 (208)
Q Consensus 56 DRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL 118 (208)
++||+++++.++|.+. ...+-+.|..-.++.++.+.. |. ...+..|++++
T Consensus 13 ~~~~v~~~i~~~L~~i-----~i~~i~~~~s~~~is~~V~~~-----~~---~~a~~~Lh~~f 62 (64)
T cd04917 13 ETAGVEKRIFDALEDI-----NVRMICYGASNHNLCFLVKEE-----DK---DEVVQRLHSRL 62 (64)
T ss_pred CCcCHHHHHHHHHHhC-----CeEEEEEecCccEEEEEEeHH-----HH---HHHHHHHHHHH
Confidence 6899999999999763 334577777777774443321 22 23566777665
No 112
>PRK11898 prephenate dehydratase; Provisional
Probab=56.55 E-value=37 Score=30.56 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=33.5
Q ss_pred EecCC-CCCchHHHHHHHHhcCCeeEeeEEeecCCe-eEEEEEEeecc
Q 037071 52 LCCNY-KPGLLSDLRRVLEALHLSIVKAEIATLEGS-MKNIFVMASCK 97 (208)
Q Consensus 52 VcCdD-RPGLLSDLtRALreL~L~ivRAEIaTlGGR-aknVFyVtd~~ 97 (208)
+..++ +||-|+++-..|...++.+++=|=-=..++ -.-.||| |+.
T Consensus 201 f~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v-d~e 247 (283)
T PRK11898 201 LTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI-DVE 247 (283)
T ss_pred EEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE-EEE
Confidence 55544 699999999999999999998776544433 3467777 444
No 113
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.12 E-value=60 Score=21.55 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=20.7
Q ss_pred CCCCCchHHHHHHHHhcCCeeEee
Q 037071 55 NYKPGLLSDLRRVLEALHLSIVKA 78 (208)
Q Consensus 55 dDRPGLLSDLtRALreL~L~ivRA 78 (208)
.++||+++++.++|.+.++++.--
T Consensus 12 ~~~~~~~~~if~~L~~~~I~v~~i 35 (66)
T cd04919 12 KNMIGIAGRMFTTLADHRINIEMI 35 (66)
T ss_pred CCCcCHHHHHHHHHHHCCCCEEEE
Confidence 368999999999999999988544
No 114
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=51.36 E-value=68 Score=22.28 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=34.4
Q ss_pred CCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHH
Q 037071 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAI 118 (208)
Q Consensus 57 RPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL 118 (208)
+||+++++.++|.+.+..+. +.+.|..-.++.++.+.. |. ...+..|++++
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~---~i~~~~s~~~is~~V~~~-----~~---~~av~~Lh~~f 64 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPI---AAHQSMRNVDVQFVVDRD-----DY---DNAIKALHAAL 64 (66)
T ss_pred cchHHHHHHHHHHHCCCCEE---EEEecCCeeEEEEEEEHH-----HH---HHHHHHHHHHH
Confidence 68999999999999998763 566677666664443322 22 23567777665
No 115
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=50.73 E-value=69 Score=21.01 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.7
Q ss_pred CCCCCchHHHHHHHHhcCCeeEee
Q 037071 55 NYKPGLLSDLRRVLEALHLSIVKA 78 (208)
Q Consensus 55 dDRPGLLSDLtRALreL~L~ivRA 78 (208)
.+.||++++|-++|.+.++.+.--
T Consensus 12 ~~~~~~~~~i~~~l~~~~I~v~~i 35 (66)
T cd04922 12 AGTPGVAATFFSALAKANVNIRAI 35 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEE
Confidence 478999999999999999987543
No 116
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=47.62 E-value=1.1e+02 Score=23.75 Aligned_cols=65 Identities=14% Similarity=0.239 Sum_probs=51.8
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeec--CCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhh
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL--EGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 124 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTl--GGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~ 124 (208)
..++|..+++|++|-.+-|+.+-=|..+..-.+++. +|++---|.|.+.. ..+.|.-.|..+.|=
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R------------~~~lL~~QLeKl~Dv 70 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDR------------SVDLLTSQLEKLYDV 70 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCC------------ChHHHHHHHHHHccc
Confidence 356789999999999999999999999999999999 89888888884432 245666666666554
No 117
>PRK14633 hypothetical protein; Provisional
Probab=47.17 E-value=1.3e+02 Score=24.72 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=40.7
Q ss_pred hHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 61 LSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 61 LSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
-..+..++.++|+.+..-|+..-|+++.-||. |.. ++ .+-+ -++.+-++|...||..
T Consensus 7 ~~lv~p~~~~~G~eL~dve~~~~~~~~lrV~I--D~~-~G-v~ld----dC~~vSr~i~~~LD~~ 63 (150)
T PRK14633 7 YEIVEPITADLGYILWGIEVVGSGKLTIRIFI--DHE-NG-VSVD----DCQIVSKEISAVFDVE 63 (150)
T ss_pred HHHHHHHHHHCCCEEEEEEEEeCCCcEEEEEE--eCC-CC-CCHH----HHHHHHHHHHHHhccC
Confidence 34567789999999999999887776555444 322 22 3332 2789999999999853
No 118
>PRK08526 threonine dehydratase; Provisional
Probab=45.06 E-value=1.5e+02 Score=28.08 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=31.7
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEee
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT 82 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaT 82 (208)
..++..+.-.||||=|.++.+.+.+.+..|+.-+-.-
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r 361 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDR 361 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEe
Confidence 4577779999999999999999999999988776644
No 119
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=44.06 E-value=1.4e+02 Score=24.47 Aligned_cols=59 Identities=20% Similarity=0.147 Sum_probs=41.7
Q ss_pred chHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 60 LLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 60 LLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
+-.-|..++.++|+.+...++..-|+.-.=-.++.. .++ .+-+ -++.+-+++...||..
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~-~~g--v~id----dc~~~Sr~is~~LD~~ 67 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDK-EGG--IDLD----DCEEVSRQISAVLDVE 67 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEEC-CCC--CCHH----HHHHHHHHHHHHhccc
Confidence 334567888999999999999988776544555532 222 3443 3788999999999854
No 120
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.73 E-value=1e+02 Score=21.03 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=35.5
Q ss_pred CCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHH
Q 037071 56 YKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAI 118 (208)
Q Consensus 56 DRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL 118 (208)
..||++.++-++|.+.++.+. +.+.|..-.++-++.+.+ |. ...+..|++++
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~---~i~~g~s~~sis~~v~~~-----~~---~~av~~Lh~~f 63 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQ---MISQGASKVNISLIVNDS-----EA---EGCVQALHKSF 63 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEE---EEEecCccceEEEEEeHH-----HH---HHHHHHHHHHH
Confidence 358999999999999998764 566677777775554422 22 23566777765
No 121
>PLN02317 arogenate dehydratase
Probab=43.47 E-value=1.4e+02 Score=28.58 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=30.5
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCe
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGS 86 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGR 86 (208)
+.|- +.-+|+||.|+++-.+|...++.+++=|=--..++
T Consensus 284 TSiv--fsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~ 322 (382)
T PLN02317 284 TSIV--FSLEEGPGVLFKALAVFALRDINLTKIESRPQRKR 322 (382)
T ss_pred EEEE--EEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCC
Confidence 4455 34478999999999999999999999886544444
No 122
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.76 E-value=1.1e+02 Score=20.97 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=33.1
Q ss_pred CCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHH
Q 037071 56 YKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAI 118 (208)
Q Consensus 56 DRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL 118 (208)
+.||+++++.++|.+.+..+ -..|..-.|+-+|.+.+ |. ...+..||+++
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~-----i~~~~s~~~is~vv~~~-----d~---~~av~~LH~~f 61 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHL-----VSQAANDLNLTFVVDED-----QA---DGLCARLHFQL 61 (63)
T ss_pred cCccHHHHHHHHHhcCCceE-----EEEeCCCCeEEEEEeHH-----HH---HHHHHHHHHHH
Confidence 67999999999998876543 55666666774443322 22 24577777765
No 123
>PRK14645 hypothetical protein; Provisional
Probab=42.66 E-value=1.6e+02 Score=24.45 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=43.0
Q ss_pred CCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 58 PGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 58 PGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
.-+-.-|..++.++|+.++..++..-|+.-.=-+|+....++ ..+-. -++.+-++|...||..
T Consensus 9 ~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~-~v~ld----dC~~vSr~is~~LD~~ 71 (154)
T PRK14645 9 PDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQ-PVTVE----DLERASRALEAELDRL 71 (154)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCC-CcCHH----HHHHHHHHHHHHhccc
Confidence 345666788999999999999999877544333445322222 23332 2788999999999854
No 124
>PRK14646 hypothetical protein; Provisional
Probab=42.28 E-value=2e+02 Score=23.86 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=43.7
Q ss_pred CchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhh
Q 037071 59 GLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 124 (208)
Q Consensus 59 GLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~ 124 (208)
-+..-+..++.++|+.++..|+..-|+...=-+|+.... ++..+-. -++.+-++|...||.
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~-g~gVtld----DC~~vSr~is~~LD~ 68 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTN-GDDISLD----DCALFNTPASEEIEN 68 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCC-CCCccHH----HHHHHHHHHHHHhCc
Confidence 355667888999999999999999888765556663322 2223332 268899999999985
No 125
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=42.08 E-value=1.6e+02 Score=24.97 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=39.3
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEE-eecCCeeEEEEEEe
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEI-ATLEGSMKNIFVMA 94 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEI-aTlGGRaknVFyVt 94 (208)
..+-+++.-+||.|.||++-.++....+.++--+= .-+.|||.-++-+.
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~ 120 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSID 120 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEE
Confidence 45778899999999999999999999998876543 34677877777663
No 126
>PRK14636 hypothetical protein; Provisional
Probab=39.85 E-value=2.3e+02 Score=24.14 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=41.8
Q ss_pred chHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 60 LLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 60 LLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
+..-+..++.++|+.++..|+..-|+...=-+|+.... ++..+-. -++.+-++|..+||..
T Consensus 7 i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~-~ggV~lD----DC~~vSr~Is~~LD~~ 67 (176)
T PRK14636 7 LTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPD-TRQLVIE----DCAALSRRLSDVFDEL 67 (176)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCC-CCCcCHH----HHHHHHHHHHHHhccC
Confidence 45567778999999999999988876544344443322 2223333 2788999999999853
No 127
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=39.24 E-value=80 Score=29.87 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=38.1
Q ss_pred EEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEE
Q 037071 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVM 93 (208)
Q Consensus 49 rasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyV 93 (208)
++-+.=.|+||.++.|+.+|.++++.|..=.....|+.+-.+|-+
T Consensus 340 rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~ 384 (409)
T PRK11790 340 RLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV 384 (409)
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence 344678999999999999999999999888888889777776655
No 128
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.08 E-value=1e+02 Score=19.28 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.3
Q ss_pred cCCCCCchHHHHHHHHhcCCeeEe
Q 037071 54 CNYKPGLLSDLRRVLEALHLSIVK 77 (208)
Q Consensus 54 CdDRPGLLSDLtRALreL~L~ivR 77 (208)
-.|.||.+.++.++|.+.++.+.-
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~ 31 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDM 31 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEE
Confidence 378899999999999999998844
No 129
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=38.07 E-value=1.8e+02 Score=22.80 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=24.3
Q ss_pred EEEecCCCCCchHHHHHHHHhcCCeeEee
Q 037071 50 ASLCCNYKPGLLSDLRRVLEALHLSIVKA 78 (208)
Q Consensus 50 asVcCdDRPGLLSDLtRALreL~L~ivRA 78 (208)
+++-.+|+||+|+.|+-.|..=|..|-.=
T Consensus 11 isvlv~N~pGVL~RIaglFsRRgyNIeSL 39 (96)
T PRK08178 11 LELTVRNHPGVMSHVCGLFARRAFNVEGI 39 (96)
T ss_pred EEEEEECCcCHHHHHHHHHhcCCcCeeeE
Confidence 46889999999999999998877766543
No 130
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=36.83 E-value=1.7e+02 Score=28.85 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=35.1
Q ss_pred EecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEE--EEEEee
Q 037071 52 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKN--IFVMAS 95 (208)
Q Consensus 52 VcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRakn--VFyVtd 95 (208)
+...|+||-|+++-.+|...|+.+++=|=--..++.-. .|||..
T Consensus 36 FsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 36 FSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred EECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 55589999999999999999999998887666555444 677744
No 131
>PRK14634 hypothetical protein; Provisional
Probab=35.62 E-value=2.6e+02 Score=23.21 Aligned_cols=61 Identities=7% Similarity=-0.051 Sum_probs=41.7
Q ss_pred chHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 60 LLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 60 LLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
+-.-+..++.++|+.++..|+..-|+...=-.|+... +|...+-. -++.+-++|..+||..
T Consensus 9 i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~-~g~~v~ld----dC~~vSr~is~~LD~~ 69 (155)
T PRK14634 9 LETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRS-SGSDVSLD----DCAGFSGPMGEALEAS 69 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECC-CCCcccHH----HHHHHHHHHHHHhccc
Confidence 4455667788999999999999887664445555322 23223332 2688999999999853
No 132
>PRK06545 prephenate dehydrogenase; Validated
Probab=35.47 E-value=2e+02 Score=26.29 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=36.8
Q ss_pred EEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEE
Q 037071 47 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVM 93 (208)
Q Consensus 47 ~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyV 93 (208)
+..+.|--+||||-++.|+..|-+.+++|..-+|---=|....++.+
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~ 336 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQI 336 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEE
Confidence 34555777999999999999999999999999995444455555555
No 133
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=35.43 E-value=78 Score=26.40 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=32.0
Q ss_pred EEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCC
Q 037071 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEG 85 (208)
Q Consensus 49 rasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGG 85 (208)
..||..+++||=|..++.+|.+.|+.+.---|+--|+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~d 41 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGD 41 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccC
Confidence 4689999999999999999999999987767766655
No 134
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=34.80 E-value=42 Score=22.19 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.5
Q ss_pred ecCCCCCchHHHHHHHHhcCCeeE
Q 037071 53 CCNYKPGLLSDLRRVLEALHLSIV 76 (208)
Q Consensus 53 cCdDRPGLLSDLtRALreL~L~iv 76 (208)
...|+||.++++.++|.+.++++.
T Consensus 8 ~~~~~~g~~~~i~~~L~~~~I~i~ 31 (75)
T cd04913 8 GVPDKPGVAAKIFGALAEANINVD 31 (75)
T ss_pred CCCCCCcHHHHHHHHHHHcCCeEE
Confidence 347899999999999999999886
No 135
>PRK14647 hypothetical protein; Provisional
Probab=34.46 E-value=2.2e+02 Score=23.61 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 62 SDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 62 SDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
.-+..++.++|+.++..++.+-|+...=-+|+ |..+| .+-. -++.+-++|...||..
T Consensus 12 ~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~I-D~~~g--vsld----dC~~vSr~is~~LD~~ 68 (159)
T PRK14647 12 ELAEQVLSSLGLELVELEYKREGREMVLRLFI-DKEGG--VNLD----DCAEVSRELSEILDVE 68 (159)
T ss_pred HHHHHHHHHCCCEEEEEEEEecCCCeEEEEEE-eCCCC--CCHH----HHHHHHHHHHHHHccc
Confidence 34567788999999999999988754334444 32222 3332 2788999999999854
No 136
>PRK14632 hypothetical protein; Provisional
Probab=34.46 E-value=2.3e+02 Score=23.98 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 62 SDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 62 SDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
.-+.-++.++|+.++..|+.. |++..=-+|+ |.. ++ .+-+ -++.+-++|..+||..
T Consensus 12 ~li~pv~~~~G~eLvdve~~~-~~~~~lrV~I-D~~-~G-V~ld----DC~~vSr~is~~LD~~ 67 (172)
T PRK14632 12 DMAGPFLASLGLELWGIELSY-GGRTVVRLFV-DGP-EG-VTID----QCAEVSRHVGLALEVE 67 (172)
T ss_pred HHHHHHHHHCCCEEEEEEEEe-CCCcEEEEEE-ECC-CC-CCHH----HHHHHHHHHHHHhccc
Confidence 445667889999999999986 4443233333 322 22 3332 2688999999999854
No 137
>PRK14639 hypothetical protein; Provisional
Probab=33.32 E-value=1.9e+02 Score=23.52 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=39.9
Q ss_pred HHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 64 LRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 64 LtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
+-.++.++|+.++..|..+-|++..=-+|+. .. ++ .+-+ -++.+-++|...||..
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id-~~-~g-v~id----dC~~vSr~is~~LD~~ 57 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYIT-KE-GG-VNLD----DCERLSELLSPIFDVE 57 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEe-CC-CC-CCHH----HHHHHHHHHHHHhccc
Confidence 5567889999999999999887655555553 22 22 3433 2788999999999854
No 138
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=32.62 E-value=34 Score=25.18 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=24.3
Q ss_pred EEEecCC-CCCchHHHHHHHHhcCCeeEe
Q 037071 50 ASLCCNY-KPGLLSDLRRVLEALHLSIVK 77 (208)
Q Consensus 50 asVcCdD-RPGLLSDLtRALreL~L~ivR 77 (208)
++|-..| ++|.++.++++|.++|+.|.+
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~ 30 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDR 30 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHH
Confidence 3577788 999999999999999998763
No 139
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=32.51 E-value=2.6e+02 Score=23.89 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=34.6
Q ss_pred EecCCCCCchHHHHHHHHhcCCeeEeeEEee--cCCeeEEEEEE
Q 037071 52 LCCNYKPGLLSDLRRVLEALHLSIVKAEIAT--LEGSMKNIFVM 93 (208)
Q Consensus 52 VcCdDRPGLLSDLtRALreL~L~ivRAEIaT--lGGRaknVFyV 93 (208)
+...||||.+..|+.+|-+.+..|..-.++- .||.+.=++-|
T Consensus 153 ~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v 196 (208)
T TIGR00719 153 LEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI 196 (208)
T ss_pred EEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence 4458999999999999999999998887764 56777666666
No 140
>PRK14637 hypothetical protein; Provisional
Probab=32.02 E-value=2.7e+02 Score=23.03 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=42.8
Q ss_pred CCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhh
Q 037071 58 PGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 124 (208)
Q Consensus 58 PGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~ 124 (208)
-|....+..++.++|+.++.-++..-|+.-.=-+|+ |.. ++ .+-. -++.+-++|..+||.
T Consensus 8 ~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~I-D~~-~g-V~id----dC~~vSr~Is~~LD~ 67 (151)
T PRK14637 8 LGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVI-YSA-GG-VGLD----DCARVHRILVPRLEA 67 (151)
T ss_pred ccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEE-ECC-CC-CCHH----HHHHHHHHHHHHhcc
Confidence 467788999999999999999999987763333444 222 22 3433 267888888888874
No 141
>PRK12483 threonine dehydratase; Reviewed
Probab=31.83 E-value=2.8e+02 Score=27.41 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=37.1
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeecc
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCK 97 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~ 97 (208)
..++..|.-.||||-|.++.+.|.+. .|+.-+-....-+-..+++.-...
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~ 393 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTH 393 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeC
Confidence 44666699999999999999999988 666555555666666677665443
No 142
>PRK14638 hypothetical protein; Provisional
Probab=31.64 E-value=2.8e+02 Score=22.84 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=40.7
Q ss_pred hHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 61 LSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 61 LSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
-.-+..++.++|+.++..|...-|+...=-+|+.. . ++..+-+ -++.+-++|...||..
T Consensus 11 ~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~-~-~G~v~ld----dC~~vSr~is~~LD~~ 69 (150)
T PRK14638 11 RKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDN-P-VGYVSVR----DCELFSREIERFLDRE 69 (150)
T ss_pred HHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEEC-C-CCCcCHH----HHHHHHHHHHHHhccc
Confidence 34567788999999999999987765444455532 2 2223332 2688999999999853
No 143
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=31.19 E-value=78 Score=29.10 Aligned_cols=64 Identities=20% Similarity=0.201 Sum_probs=41.4
Q ss_pred HHHHHHHhhccCCCCCCCcceeEEEccccC------CCCCceEEEEEEecCCCCCchHHHHHHHHhcCCe
Q 037071 11 ELDKNATEATEGFLRPTDIDEVKVEQQEDG------LDGAPYSIKASLCCNYKPGLLSDLRRVLEALHLS 74 (208)
Q Consensus 11 ELK~~Aae~~~g~~vPtEaDEV~Vd~~~~~------~~g~~~~irasVcCdDRPGLLSDLtRALreL~L~ 74 (208)
||=++..+..+...||..++...+|...=. .+...-+|.+|+.|..-|.-.++|+|+|+.++=.
T Consensus 93 eLa~~i~~~l~~~~v~a~~~~~gLDHGtwvpL~~M~PdadipVV~iSi~~~~~~~~h~~lG~al~~lree 162 (268)
T COG3384 93 ELAQRIVELLAKLGVPADAPSWGLDHGTWVPLRYMFPDADIPVVQISIDCTLSPADHYELGRALRKLREE 162 (268)
T ss_pred HHHHHHHHHhcccCccccCCccCCCccceeeehhhCCccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhC
Confidence 444444444444556666544445433210 1222467999999999999999999999998653
No 144
>PF09876 DUF2103: Predicted metal-binding protein (DUF2103); InterPro: IPR018664 This family of various putative metal binding prokaryotic proteins has no known function.
Probab=30.20 E-value=1.1e+02 Score=24.26 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=23.3
Q ss_pred EeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHH
Q 037071 80 IATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSV 121 (208)
Q Consensus 80 IaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~v 121 (208)
|+--|.-+.-||+||+.. +.+ ..+.+.+.|..+
T Consensus 70 lar~G~SvQEvfVVT~~~-----~~e----~~~~i~~~Ln~~ 102 (103)
T PF09876_consen 70 LARSGSSVQEVFVVTTLS-----DRE----LGERIIEELNEA 102 (103)
T ss_pred EEecCCeeEEEEEEeeCC-----cHH----HHHHHHHHHHhh
Confidence 356689999999999965 222 456777777654
No 145
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=30.01 E-value=2.6e+02 Score=27.39 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=35.2
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecC-CeeEEEEEEee
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE-GSMKNIFVMAS 95 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlG-GRaknVFyVtd 95 (208)
+.+- +...|+||-|+++-.+|.+.++.+++=|=--.. ..-.-.|||..
T Consensus 17 TSLi--FsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~ 65 (436)
T TIGR01268 17 TSLI--FSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF 65 (436)
T ss_pred EEEE--EEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE
Confidence 4455 455899999999999999999999887653332 22345788854
No 146
>PF11482 DUF3208: Protein of unknown function (DUF3208); InterPro: IPR021576 This bacterial family of proteins has no known function. ; PDB: 2EBG_A 2EBE_B 2EI5_B.
Probab=29.11 E-value=17 Score=29.09 Aligned_cols=8 Identities=75% Similarity=1.689 Sum_probs=6.0
Q ss_pred Ccccccce
Q 037071 156 DYLWHPRI 163 (208)
Q Consensus 156 ~~~~~~~~ 163 (208)
-|+|||+-
T Consensus 9 GYlWhPr~ 16 (108)
T PF11482_consen 9 GYLWHPRD 16 (108)
T ss_dssp EEEEEETT
T ss_pred cccccccc
Confidence 48888873
No 147
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=28.64 E-value=2.2e+02 Score=22.63 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=37.1
Q ss_pred HHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 64 LRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 64 LtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
|..++.++|+.+...++..-|+...=-.|+.. . ++ .+-. -++.+-+++...||..
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~-~-~g-v~ld----dc~~~sr~i~~~LD~~ 56 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDK-D-GG-VSLD----DCEKVSRAISALLDAE 56 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE--S-S----HH----HHHHHHHHHGGGTTTS
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEe-C-CC-CCHH----HHHHHHHHHHHHHccc
Confidence 45778999999999999999987554445533 2 22 3443 2788999999999884
No 148
>PF14414 WHH: A nuclease of the HNH/ENDO VII superfamily with conserved WHH
Probab=27.58 E-value=23 Score=23.70 Aligned_cols=40 Identities=33% Similarity=0.692 Sum_probs=25.0
Q ss_pred CCCCCcccccceeeecccchhHHHHHHHHhhhcCCCCCchhHHHH
Q 037071 152 SSSSDYLWHPRITISRLRPSLVRTITAVAQRRLPTMGGSSVWEKW 196 (208)
Q Consensus 152 ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (208)
++..+|.||=.-...++ .||.+- .-..+|-.||.|.|.+|
T Consensus 4 ~~p~g~TWHH~~d~~~m--qLV~~~---~H~~~~H~GG~s~~~~~ 43 (43)
T PF14414_consen 4 STPNGYTWHHHDDGGTM--QLVPRE---IHGAFPHTGGVSQWKKW 43 (43)
T ss_pred cCCCCCcccccCCCceE--EEeeHH---HhCCCccCChHHhhccC
Confidence 45678999854332221 233321 22338999999999998
No 149
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=27.34 E-value=56 Score=27.22 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.7
Q ss_pred EecCCCCCchHHHHHHHHhcCCeeE
Q 037071 52 LCCNYKPGLLSDLRRVLEALHLSIV 76 (208)
Q Consensus 52 VcCdDRPGLLSDLtRALreL~L~iv 76 (208)
|-.+|+||=|+.|..+|...++.+-
T Consensus 74 VEmeD~PG~l~~I~~vl~d~diNld 98 (142)
T COG4747 74 VEMEDVPGGLSRIAEVLGDADINLD 98 (142)
T ss_pred EEecCCCCcHHHHHHHHhhcCcCce
Confidence 6679999999999999999877554
No 150
>PRK08210 aspartate kinase I; Reviewed
Probab=27.13 E-value=2.2e+02 Score=26.34 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=33.9
Q ss_pred CCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHH
Q 037071 55 NYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAI 118 (208)
Q Consensus 55 dDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL 118 (208)
.++||.++++.++|.+.++.+.. ++| ....-.|+|... |. ...+..||+++
T Consensus 350 ~~~~g~~~~i~~aL~~~~I~i~~--~~~--s~~~is~vv~~~------~~---~~a~~~Lh~~f 400 (403)
T PRK08210 350 AGVPGVMAKIVTALSEEGIEILQ--SAD--SHTTIWVLVKEE------DM---EKAVNALHDAF 400 (403)
T ss_pred CCCccHHHHHHHHHHhCCCCEEE--Eec--CCCEEEEEEcHH------HH---HHHHHHHHHHh
Confidence 37999999999999999999963 455 233344555321 12 23567777765
No 151
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=26.74 E-value=34 Score=30.97 Aligned_cols=39 Identities=28% Similarity=0.121 Sum_probs=25.6
Q ss_pred HHHHHhhcccchhhhcCCCCCCCccee----ccccCCCCCCCC
Q 037071 118 IRSVLDKFSATEEFLLGAKLSNKRRRV----SLFDSSLSSSSD 156 (208)
Q Consensus 118 L~~vLe~~sas~e~s~~~~~~~KR~R~----s~~~ss~ss~~~ 156 (208)
+.-+|..++.++++.+..+.++|+--- -.-|||||||+|
T Consensus 228 ~~m~m~~p~~s~~v~Le~~g~~~~~qDDVE~MStDSSsSSSsd 270 (272)
T KOG4552|consen 228 YNMVMQSPSSSPNVKLEITGGIDQVQDDVEQMSTDSSSSSSSD 270 (272)
T ss_pred chhhccCCCCCCCeeeecCCCcccchhhHHHhccCCCCccccc
Confidence 445666777778877777778887542 234566666665
No 152
>PRK14640 hypothetical protein; Provisional
Probab=26.68 E-value=3.6e+02 Score=22.16 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=41.1
Q ss_pred chHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 60 LLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 60 LLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
+..-+..++.++|+.+.--|+..-|+.-.=-.|+.. .+| .+-+ -++.+-++|..+||..
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~-~~g--v~ld----dC~~vSr~is~~LD~~ 66 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDG-ENG--VSVE----NCAEVSHQVGAIMDVE 66 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEEC-CCC--CCHH----HHHHHHHHHHHHhccc
Confidence 344567788999999999999887765544555532 222 3333 2788999999999853
No 153
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=26.63 E-value=2.3e+02 Score=19.84 Aligned_cols=49 Identities=16% Similarity=0.344 Sum_probs=36.8
Q ss_pred eEEEEEEecCCC-CCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEee
Q 037071 46 YSIKASLCCNYK-PGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMAS 95 (208)
Q Consensus 46 ~~irasVcCdDR-PGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd 95 (208)
..+++.+..+.. -.+++++.+.+ ....+++.|.|..++|.....|++.=
T Consensus 3 ~l~~l~f~g~~~~~piis~l~~~~-~v~~nIl~g~i~~i~~~~~G~l~l~l 52 (76)
T PF09383_consen 3 RLVRLTFTGNSAQEPIISQLIREF-GVDVNILHGNIEEIQGTPFGILILEL 52 (76)
T ss_dssp EEEEEEEESCSSSSCHHHHHHHHH-T-EEEEEEEEEEEETTEEEEEEEEEE
T ss_pred eEEEEEEcCCCcCchHHHHHHHHh-CCCEEEEEEEeEEcCCeeEEEEEEEE
Confidence 457766776665 45666666654 35668999999999999999999955
No 154
>PRK14643 hypothetical protein; Provisional
Probab=25.20 E-value=4.1e+02 Score=22.30 Aligned_cols=61 Identities=10% Similarity=0.120 Sum_probs=42.6
Q ss_pred chHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEee--ccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 60 LLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMAS--CKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 60 LLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd--~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
|-.-+..++.++|+.++-.|..+-|+.-.=-+|+.+ ..+|+ .+-. -++.+-++|...||..
T Consensus 11 l~~l~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~gg-vtld----DC~~vSr~is~~LD~~ 73 (164)
T PRK14643 11 INELVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKP-LDFD----ILIKANDLVSNKIDQF 73 (164)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCC-cCHH----HHHHHHHHHHHHhCcc
Confidence 445567788999999999999998886544556643 12222 3332 2678899999999853
No 155
>PRK08639 threonine dehydratase; Validated
Probab=23.48 E-value=5.6e+02 Score=24.08 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=30.0
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEe-ecCCeeEEEEEEee
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA-TLEGSMKNIFVMAS 95 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIa-TlGGRaknVFyVtd 95 (208)
..++..+.-+||||-|.++.+.+-+-+-.|+.-+=. ..+.....+++.-.
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE 385 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIE 385 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEE
Confidence 457777999999999999999444433355533221 11333445555433
No 156
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=22.88 E-value=2.9e+02 Score=25.17 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=26.6
Q ss_pred EEEEEecCCCCCch-HHHHHHHHhcCCeeEeeEEeecC
Q 037071 48 IKASLCCNYKPGLL-SDLRRVLEALHLSIVKAEIATLE 84 (208)
Q Consensus 48 irasVcCdDRPGLL-SDLtRALreL~L~ivRAEIaTlG 84 (208)
+++ ++++.||.+- ..+++.|.+.|+.+.----+..|
T Consensus 136 ~~V-~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa~~ 172 (275)
T PRK08335 136 FKV-ILTESAPDYEGLALANELEFLGIEFEVITDAQLG 172 (275)
T ss_pred eEE-EEecCCCchhHHHHHHHHHHCCCCEEEEeccHHH
Confidence 555 6889999887 58999999999877644333333
No 157
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=22.71 E-value=1.7e+02 Score=19.98 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=31.1
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccC
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKE 98 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~g 98 (208)
..+.+..+| +..+.+.+.+.|..++.....-- ....||+.|..|
T Consensus 66 ~~~~~~v~d----~~~~~~~l~~~g~~~~~~~~~~~---~~~~~~~~DP~G 109 (114)
T cd07245 66 DHIAFRVDD----LDAFRARLKAAGVPYTESDVPGD---GVRQLFVRDPDG 109 (114)
T ss_pred ceEEEEeCC----HHHHHHHHHHcCCCcccccCCCC---CccEEEEECCCC
Confidence 344466677 78899999999999887664312 234688888764
No 158
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=22.13 E-value=3.2e+02 Score=25.17 Aligned_cols=50 Identities=26% Similarity=0.454 Sum_probs=33.9
Q ss_pred CCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEE-EEEeeccCcCccChHHHHHHHHHHHHHH
Q 037071 55 NYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNI-FVMASCKELNFENTEVCQSLVSSVHQAI 118 (208)
Q Consensus 55 dDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknV-FyVtd~~gg~~~D~~~~~~~~~sVrqAL 118 (208)
.++||+++++.++|.+.+..+.. |+|- -.++ |+|.. + |. ...+..||+++
T Consensus 348 ~~~~g~~a~i~~~L~~~gIni~~--i~~s---~~~is~vv~~-~-----d~---~~av~~Lh~~f 398 (401)
T TIGR00656 348 VGAPGVASEIFSALEEKNINILM--IGSS---ETNISFLVDE-K-----DA---EKAVRKLHEVF 398 (401)
T ss_pred ccCccHHHHHHHHHHHCCCcEEE--EEcC---CCEEEEEEeH-H-----HH---HHHHHHHHHHH
Confidence 47999999999999999999973 4432 2344 44422 1 22 24677777776
No 159
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=21.56 E-value=1e+02 Score=18.85 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=19.5
Q ss_pred CCCCchHHHHHHHHhcCCeeEe
Q 037071 56 YKPGLLSDLRRVLEALHLSIVK 77 (208)
Q Consensus 56 DRPGLLSDLtRALreL~L~ivR 77 (208)
+.||.++++-++|.+.++.+.-
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~ 33 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDM 33 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEE
Confidence 5899999999999999998843
No 160
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=21.48 E-value=6.9e+02 Score=23.51 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=31.3
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEe-ecCCeeEEEEEE
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA-TLEGSMKNIFVM 93 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIa-TlGGRaknVFyV 93 (208)
..++..+.=+||||=|.++.+.+-+.+..|+.-+=. ..+-....+++.
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~ 372 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIG 372 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEE
Confidence 446667999999999999999666665577733322 344333444444
No 161
>PRK14630 hypothetical protein; Provisional
Probab=21.40 E-value=4e+02 Score=21.78 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=42.0
Q ss_pred CCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 58 PGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 58 PGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
.-+-.-+..++.++|+.++..|...-|+...=-+|+.. . ++ .+-. -++.+-+++...|+.+
T Consensus 8 ~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~-~-~g-V~id----DC~~vSr~i~~~ld~~ 68 (143)
T PRK14630 8 SEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYK-K-DS-FGVD----TLCDLHKMILLILEAV 68 (143)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEEC-C-CC-CCHH----HHHHHHHHHHHHhccc
Confidence 34456678889999999999999887765544555532 2 22 3332 2678888888888864
No 162
>PF09059 TyeA: TyeA; InterPro: IPR015144 This domain is composed of two pairs of parallel alpha-helices, and interacts with the bacterial protein YopN via hydrophobic residues located on the helices. Association of TyeA with the C terminus of YopN is accompanied by conformational changes in both polypeptides that create order out of disorder: the resulting structure then serves as an impediment to type III secretion of YopN []. ; PDB: 1XL3_D.
Probab=21.11 E-value=1.3e+02 Score=23.13 Aligned_cols=46 Identities=15% Similarity=0.321 Sum_probs=34.2
Q ss_pred CCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 55 NYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 55 dDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
+.+..+|-++-+.+|.+.. +-..|.+++++++++++.||-.++++.
T Consensus 39 e~qI~Flrel~~l~r~~Pv-------------------------~vF~D~EqR~~vL~a~Q~alD~aI~~E 84 (87)
T PF09059_consen 39 EQQILFLRELKELFRLMPV-------------------------DVFNDEEQRQNVLDAVQEALDQAIERE 84 (87)
T ss_dssp HHHHHHHHHHHHHHHTS-G-------------------------GGSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcH-------------------------HhcCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456677777788887776 234688889999999999999998763
No 163
>PF12468 TTSSLRR: Type III secretion system leucine rich repeat protein ; PDB: 3CVR_A 3G06_A 1JL5_A 1G9U_A.
Probab=20.88 E-value=51 Score=22.54 Aligned_cols=13 Identities=23% Similarity=0.902 Sum_probs=9.9
Q ss_pred hhHHHHHHhhhhh
Q 037071 191 SVWEKWEKERLLE 203 (208)
Q Consensus 191 ~~~~~~~~~~~~~ 203 (208)
.+|.+|+|+..-+
T Consensus 24 aiWseW~~~ap~g 36 (46)
T PF12468_consen 24 AIWSEWERNAPPG 36 (46)
T ss_dssp HHHHHHHHTS-TT
T ss_pred HHHHHHHHcCCCC
Confidence 5899999987655
No 164
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=20.76 E-value=1.9e+02 Score=23.99 Aligned_cols=52 Identities=13% Similarity=0.076 Sum_probs=30.9
Q ss_pred CCCCCcceeEEEccccC------CCCCceEEEEE-EecCCCCCchHHHHHHHHhcCCee
Q 037071 24 LRPTDIDEVKVEQQEDG------LDGAPYSIKAS-LCCNYKPGLLSDLRRVLEALHLSI 75 (208)
Q Consensus 24 ~vPtEaDEV~Vd~~~~~------~~g~~~~iras-VcCdDRPGLLSDLtRALreL~L~i 75 (208)
.+-...||..+.+..+. .++|-..++.+ ..-=|=+|.|+.|.+.|.++|+-|
T Consensus 36 sIt~t~eelsivc~~~~vp~~V~~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigI 94 (128)
T COG3603 36 SITRTPEELSIVCLADRVPDVVQIEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGI 94 (128)
T ss_pred EEEcCCceEEEEeecccCCcceEecCCeEEEEEeccccCCcchhhhhhhhhHhhCCccE
Confidence 34444556666655543 12222334421 223477999999999999999943
No 165
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.40 E-value=2.6e+02 Score=18.13 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=20.2
Q ss_pred CCCCCchHHHHHHHHhcCCeeEee
Q 037071 55 NYKPGLLSDLRRVLEALHLSIVKA 78 (208)
Q Consensus 55 dDRPGLLSDLtRALreL~L~ivRA 78 (208)
.+.||+++++-++|.+.++.+---
T Consensus 12 ~~~~~~~~~i~~~L~~~~I~v~~i 35 (66)
T cd04924 12 RGTPGVAGRVFGALGKAGINVIMI 35 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEE
Confidence 367999999999999999987433
Done!