Query 037071
Match_columns 208
No_of_seqs 113 out of 228
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 13:58:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nyi_A Unknown protein; protei 98.4 7.7E-07 2.6E-11 73.2 7.7 72 47-125 93-166 (195)
2 1u8s_A Glycine cleavage system 98.3 3E-06 1E-10 68.7 9.0 74 46-125 92-169 (192)
3 1u8s_A Glycine cleavage system 98.0 2.5E-05 8.6E-10 63.2 9.6 66 48-124 7-72 (192)
4 1zpv_A ACT domain protein; str 97.9 7.3E-05 2.5E-09 53.1 8.9 67 47-123 5-71 (91)
5 2ko1_A CTR148A, GTP pyrophosph 97.8 0.00013 4.3E-09 51.0 8.5 48 46-93 4-51 (88)
6 2nyi_A Unknown protein; protei 97.8 5E-05 1.7E-09 62.3 7.1 109 47-180 5-114 (195)
7 2jhe_A Transcription regulator 97.2 0.001 3.5E-08 50.9 7.8 35 49-83 2-36 (190)
8 3n0v_A Formyltetrahydrofolate 97.1 0.00092 3.1E-08 58.8 6.8 100 48-159 9-109 (286)
9 3obi_A Formyltetrahydrofolate 97.0 0.00077 2.6E-08 59.4 5.3 94 48-152 7-100 (288)
10 3p96_A Phosphoserine phosphata 96.8 0.0035 1.2E-07 55.6 8.5 111 48-180 13-123 (415)
11 3lou_A Formyltetrahydrofolate 96.8 0.0012 4.2E-08 58.3 5.4 103 48-159 11-114 (292)
12 3o1l_A Formyltetrahydrofolate 96.8 0.0015 5.2E-08 58.0 6.0 101 48-159 23-124 (302)
13 3nrb_A Formyltetrahydrofolate 96.8 0.0015 5E-08 57.6 5.3 99 48-159 8-107 (287)
14 2f1f_A Acetolactate synthase i 95.8 0.026 8.9E-07 46.1 7.3 64 49-123 5-70 (164)
15 2pc6_A Probable acetolactate s 95.4 0.072 2.5E-06 43.6 8.5 64 49-123 6-71 (165)
16 1y7p_A Hypothetical protein AF 93.9 0.095 3.3E-06 45.3 6.0 38 47-84 4-41 (223)
17 2fgc_A Acetolactate synthase, 92.3 0.42 1.4E-05 40.3 7.5 65 48-123 30-96 (193)
18 2f06_A Conserved hypothetical 89.1 1.1 3.8E-05 33.9 6.7 40 52-91 77-116 (144)
19 2f06_A Conserved hypothetical 80.8 5.3 0.00018 30.1 6.9 35 47-81 6-40 (144)
20 3mtj_A Homoserine dehydrogenas 77.5 1.6 5.6E-05 40.4 3.7 31 45-77 359-389 (444)
21 2qmx_A Prephenate dehydratase; 74.8 8.8 0.0003 33.5 7.4 55 46-104 201-256 (283)
22 3luy_A Probable chorismate mut 70.8 31 0.0011 30.7 10.1 57 55-121 216-273 (329)
23 3mwb_A Prephenate dehydratase; 67.9 22 0.00075 31.5 8.5 51 52-104 206-258 (313)
24 2qmw_A PDT, prephenate dehydra 66.9 18 0.00062 31.3 7.6 47 46-94 187-237 (267)
25 1vgj_A Hypothetical protein PH 65.8 42 0.0014 25.5 9.2 83 52-170 45-133 (184)
26 3ced_A Methionine import ATP-b 59.3 42 0.0014 24.3 7.3 49 46-95 21-70 (98)
27 2re1_A Aspartokinase, alpha an 58.9 37 0.0013 26.3 7.5 58 48-118 104-164 (167)
28 1sc6_A PGDH, D-3-phosphoglycer 57.6 25 0.00085 31.8 7.0 45 49-93 333-377 (404)
29 2qsw_A Methionine import ATP-b 57.0 32 0.0011 24.7 6.3 49 46-95 24-73 (100)
30 3dhx_A Methionine import ATP-b 56.4 20 0.00069 26.3 5.2 48 46-94 22-70 (106)
31 1iuh_A 2'-5' RNA ligase; riken 50.9 88 0.003 24.5 8.9 62 52-124 44-111 (198)
32 2qrr_A Methionine import ATP-b 49.9 33 0.0011 24.6 5.4 49 46-95 24-73 (101)
33 2dtj_A Aspartokinase; protein- 43.3 61 0.0021 25.4 6.4 57 50-119 98-157 (178)
34 2dt9_A Aspartokinase; protein- 43.2 79 0.0027 24.3 7.0 56 50-118 98-156 (167)
35 3p96_A Phosphoserine phosphata 40.4 1.4E+02 0.0048 25.8 8.9 85 50-148 104-191 (415)
36 3g12_A Putative lactoylglutath 37.9 98 0.0033 21.9 6.4 45 48-99 68-113 (128)
37 3m05_A Uncharacterized protein 36.6 53 0.0018 25.1 4.9 39 57-95 14-52 (114)
38 1ygy_A PGDH, D-3-phosphoglycer 35.4 1.6E+02 0.0054 27.1 8.8 42 52-93 459-502 (529)
39 2d4g_A Hypothetical protein BS 34.6 83 0.0029 23.6 5.8 74 59-171 46-124 (171)
40 1phz_A Protein (phenylalanine 32.9 1E+02 0.0035 28.7 7.0 47 45-93 34-81 (429)
41 3c1m_A Probable aspartokinase; 32.9 67 0.0023 29.3 5.8 59 50-119 407-468 (473)
42 3r6a_A Uncharacterized protein 29.5 1.6E+02 0.0055 21.4 6.5 41 52-99 71-111 (144)
43 1xl3_C Protein type A, secreti 29.4 91 0.0031 23.3 5.0 42 59-125 43-84 (92)
44 2ebe_A Hypothetical protein TT 27.1 12 0.00042 28.7 -0.2 8 156-163 9-16 (106)
45 3k5p_A D-3-phosphoglycerate de 26.7 2.4E+02 0.0081 25.7 8.3 46 48-96 344-389 (416)
46 2re1_A Aspartokinase, alpha an 25.5 48 0.0017 25.6 3.0 45 49-93 27-73 (167)
47 4h10_B Circadian locomoter out 23.7 32 0.0011 24.3 1.5 18 1-18 46-63 (71)
48 2dt9_A Aspartokinase; protein- 23.0 2.5E+02 0.0086 21.3 7.7 23 55-77 25-47 (167)
49 2lic_A Vitellogenin; lipid tra 21.3 41 0.0014 20.8 1.4 23 141-163 11-34 (35)
50 2dtj_A Aspartokinase; protein- 20.8 2.2E+02 0.0076 22.1 6.1 24 53-76 22-45 (178)
No 1
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=98.38 E-value=7.7e-07 Score=73.18 Aligned_cols=72 Identities=21% Similarity=0.171 Sum_probs=59.1
Q ss_pred EEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecC--CeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhh
Q 037071 47 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE--GSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 124 (208)
Q Consensus 47 ~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlG--GRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~ 124 (208)
...++|.|.|||||++.|+++|.++|+.|..+.+.|.+ ++..++||++...+.. +. .. +.|+++|..+.++
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~--~~----~~-~~l~~~l~~~a~~ 165 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP--FP----LY-QEVVTALSRVEEE 165 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE--GG----GH-HHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC--CC----cc-HHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999 8889999998866422 12 13 6788888877655
Q ss_pred c
Q 037071 125 F 125 (208)
Q Consensus 125 ~ 125 (208)
.
T Consensus 166 l 166 (195)
T 2nyi_A 166 F 166 (195)
T ss_dssp H
T ss_pred c
Confidence 3
No 2
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=98.29 E-value=3e-06 Score=68.66 Aligned_cols=74 Identities=12% Similarity=0.238 Sum_probs=56.9
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCC----eeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHH
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEG----SMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSV 121 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGG----RaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~v 121 (208)
....++|.|.||||++++|+++|.++++.|..+.+.|.+. +..++||++...+... +. ..+.|+++|..+
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~-~~-----~~~~l~~~l~~~ 165 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GC-----NLMQLQEEFDAL 165 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TS-----CHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC-CC-----CHHHHHHHHHHH
Confidence 4466779999999999999999999999999999999984 7899999988654321 11 257888888887
Q ss_pred Hhhc
Q 037071 122 LDKF 125 (208)
Q Consensus 122 Le~~ 125 (208)
.++.
T Consensus 166 ~~~~ 169 (192)
T 1u8s_A 166 CTAL 169 (192)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6553
No 3
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=98.04 E-value=2.5e-05 Score=63.19 Aligned_cols=66 Identities=11% Similarity=0.267 Sum_probs=53.8
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhh
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 124 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~ 124 (208)
+.++|.|.|||||++.|+.+|.++|+.|..+.+.+.+|...-.|+|... .. ..+.|+++|..++++
T Consensus 7 ~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~-------~~----~~~~l~~~L~~~~~~ 72 (192)
T 1u8s_A 7 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PS----NITRVETTLPLLGQQ 72 (192)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HH----HHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC-------CC----CHHHHHHHHHHHHHh
Confidence 4577999999999999999999999999999999988887777777432 11 357788888877644
No 4
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.91 E-value=7.3e-05 Score=53.09 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=49.3
Q ss_pred EEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHh
Q 037071 47 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLD 123 (208)
Q Consensus 47 ~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe 123 (208)
.+.++|.|.||||+|++|+++|.+.|..|......+.++...-.|.+.- . +..+ ++.|.++|..+-+
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~-~--~~~~-------l~~l~~~L~~~~~ 71 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSS-D--EKQD-------FTYLRNEFEAFGQ 71 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-S--SCCC-------HHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEe-C--CCCC-------HHHHHHHHHHHHH
Confidence 4667799999999999999999999999999999988865555555521 1 1112 4566666766543
No 5
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.79 E-value=0.00013 Score=50.99 Aligned_cols=48 Identities=10% Similarity=0.223 Sum_probs=40.3
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEE
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVM 93 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyV 93 (208)
+.+.+.|.+.||||+|++|+++|.+.++.|....+.+.++.+..+|.+
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v 51 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMI 51 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEE
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEE
Confidence 456677999999999999999999999999999999888744444444
No 6
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.78 E-value=5e-05 Score=62.29 Aligned_cols=109 Identities=16% Similarity=0.205 Sum_probs=69.7
Q ss_pred EEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhcc
Q 037071 47 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFS 126 (208)
Q Consensus 47 ~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~s 126 (208)
.+.+.|+|.|||||++.|+.+|.++|+.|+.|.+.|.+|+..=.|+|.... .... ...+.|+++|..++.+..
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~---~~~~----~~~~~l~~~L~~~~~~~~ 77 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNA---KDGK----LIQSALESALPGFQISTR 77 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS---SSSH----HHHHHHHHHSTTCEEEEE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecC---ccch----hHHHHHHHHHHHHHHhcC
Confidence 356779999999999999999999999999999999888865567775421 1111 135677777776654321
Q ss_pred cchhhhcCCCCCCCcceeccccCCCCCCCCcccccceeeec-ccchhHHHHHHHH
Q 037071 127 ATEEFLLGAKLSNKRRRVSLFDSSLSSSSDYLWHPRITISR-LRPSLVRTITAVA 180 (208)
Q Consensus 127 as~e~s~~~~~~~KR~R~s~~~ss~ss~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 180 (208)
.... .. + + .. +.+... -.|||+- =||.+|..||.+-
T Consensus 78 --~~~~----~~--~-~-----~~-~~~~~~---~iltv~g~DrpGiva~Vt~~L 114 (195)
T 2nyi_A 78 --RASS----VA--E-R-----HV-SPDTRE---YELYVEGPDSEGIVEAVTAVL 114 (195)
T ss_dssp --ECCC----C------------C-CTTEEE---EEEEEEEECCTTHHHHHHHHH
T ss_pred --CeEE----EE--e-C-----Cc-CCCCcE---EEEEEEeCCCcCHHHHHHHHH
Confidence 1111 11 1 1 11 111111 1356554 3999999998764
No 7
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.25 E-value=0.001 Score=50.89 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=32.9
Q ss_pred EEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeec
Q 037071 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATL 83 (208)
Q Consensus 49 rasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTl 83 (208)
++.|.|.||+|||+||+++|.+.+..+..+++.+-
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 56699999999999999999999999999999777
No 8
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=97.09 E-value=0.00092 Score=58.84 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=64.7
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhccc
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFSA 127 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~sa 127 (208)
+.++|.|.||||+.+.|++.|.++|..|....-.+ +...+.|+++-...... +. -.+.++++|..+-++...
T Consensus 9 ~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~--d~~~g~Ffmr~~~~~~~-~~-----~~~~L~~~f~~la~~l~m 80 (286)
T 3n0v_A 9 WILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFD--DRQSGRFFIRVEFRQPD-DF-----DEAGFRAGLAERSEAFGM 80 (286)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTTTEEEEEEEEECCS-SC-----CHHHHHHHHHHHHGGGTC
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeec--cCCCCeeEEEEEEecCC-CC-----CHHHHHHHHHHHHHHcCC
Confidence 34679999999999999999999999999877764 34456777765332211 11 157888888776443322
Q ss_pred chhhhcCCCCCCCcceeccccCCCC-CCCCccc
Q 037071 128 TEEFLLGAKLSNKRRRVSLFDSSLS-SSSDYLW 159 (208)
Q Consensus 128 s~e~s~~~~~~~KR~R~s~~~ss~s-s~~~~~~ 159 (208)
+.... ...++.|+-+|-|-+- ...+.++
T Consensus 81 --~~~l~--~~~~~~ri~vl~Sg~g~~l~~ll~ 109 (286)
T 3n0v_A 81 --AFELT--APNHRPKVVIMVSKADHCLNDLLY 109 (286)
T ss_dssp --EEEEE--CTTCCCEEEEEESSCCHHHHHHHH
T ss_pred --EEEee--cCCCCcEEEEEEeCCCCCHHHHHH
Confidence 11211 3456678888876543 3344454
No 9
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=96.97 E-value=0.00077 Score=59.36 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=61.3
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhccc
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFSA 127 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~sa 127 (208)
+.++|.|.||||+.+.|++.|.++|..|......+ ....+.|+++-.......+. -.+.|+++|..+-++...
T Consensus 7 ~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~--d~~~g~Ffmr~~~~~~~~~~-----~~~~L~~~f~~la~~~~m 79 (288)
T 3obi_A 7 YVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYN--DTESGHFFMRVVFNAAAKVI-----PLASLRTGFGVIAAKFTM 79 (288)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEE--ETTTTEEEEEEEEEESSCCC-----CHHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeee--cCCCCceEEEEEEEcCCCCC-----CHHHHHHHHHHHHHHcCC
Confidence 44679999999999999999999999999887753 23445677765332211111 146788888776444322
Q ss_pred chhhhcCCCCCCCcceeccccCCCC
Q 037071 128 TEEFLLGAKLSNKRRRVSLFDSSLS 152 (208)
Q Consensus 128 s~e~s~~~~~~~KR~R~s~~~ss~s 152 (208)
+.... ...++.|+-+|-|-+-
T Consensus 80 --~~~l~--~~~~~~ri~vl~Sg~g 100 (288)
T 3obi_A 80 --GWHMR--DRETRRKVMLLVSQSD 100 (288)
T ss_dssp --EEEEE--ETTSCEEEEEEECSCC
T ss_pred --EEEee--ccCCCcEEEEEEcCCC
Confidence 21111 2456778988866543
No 10
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=96.85 E-value=0.0035 Score=55.59 Aligned_cols=111 Identities=8% Similarity=0.093 Sum_probs=67.9
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhccc
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFSA 127 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~sa 127 (208)
+.++|.|.||||+.+.|++.|.++|..|+..+-++.+|+ |++.-..... +.. ...+.|+++|..+-++...
T Consensus 13 ~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~----f~~~~~~~~~--~~~---~~~~~l~~~l~~~~~~~~~ 83 (415)
T 3p96_A 13 VLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHR----LTLGVLVCCP--ADV---ADGPALRHDVEAAIRKVGL 83 (415)
T ss_dssp EEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTE----EEEEEEEEEC--HHH---HTSHHHHHHHHHHHHHTTC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCE----eEEEEEEEec--CCc---CCHHHHHHHHHHHHHHcCe
Confidence 457799999999999999999999999999999998885 4443322111 110 0136788888776544322
Q ss_pred chhhhcCCCCCCCcceeccccCCCCCCCCcccccceeeecccchhHHHHHHHH
Q 037071 128 TEEFLLGAKLSNKRRRVSLFDSSLSSSSDYLWHPRITISRLRPSLVRTITAVA 180 (208)
Q Consensus 128 s~e~s~~~~~~~KR~R~s~~~ss~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (208)
. ..... ..++.|. |...-++|. +.-..++|.++..|+.+.
T Consensus 84 ~--~~~~~--~~~~~~~-------~~~~~~~~~--llg~~~~~~~~~~i~~~l 123 (415)
T 3p96_A 84 D--VSIER--SDDVPII-------REPSTHTIF--VLGRPITAAAFGAVAREV 123 (415)
T ss_dssp E--EEEEE--CSSSCSS-------CCCCSEEEE--EEESSCCHHHHHHHHHHH
T ss_pred E--EEEEE--CCccccc-------CCCCcEEEE--EEeCCCCHHHHHHHHHHH
Confidence 1 11111 1122222 222233332 111245899999999887
No 11
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=96.83 E-value=0.0012 Score=58.27 Aligned_cols=103 Identities=13% Similarity=0.238 Sum_probs=64.1
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhccc
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFSA 127 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~sa 127 (208)
+.++|.|.||||+.+.|++.|.++|..|....-.+ +...+.|+++-.......+.. ...+.++++|..+-++...
T Consensus 11 ~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~--d~~~g~Ffmr~~~~~~~~~~~---~~~~~L~~~f~~la~~~~m 85 (292)
T 3lou_A 11 FVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFD--DDLSARFFVRCVFHATDDADA---LRVDALRREFEPIAERFRM 85 (292)
T ss_dssp EEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEE--ETTTTEEEEEEEEEECC-------CCHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEe--cCCCCceEEEEEEEccCcccC---CCHHHHHHHHHHHHHhcCc
Confidence 44679999999999999999999999999887774 344556777654322200100 1146788888766444322
Q ss_pred chhhhcCCCCCCCcceeccccCCCC-CCCCccc
Q 037071 128 TEEFLLGAKLSNKRRRVSLFDSSLS-SSSDYLW 159 (208)
Q Consensus 128 s~e~s~~~~~~~KR~R~s~~~ss~s-s~~~~~~ 159 (208)
+.... ...++.|+-+|-|-+- ...+.++
T Consensus 86 --~~~l~--~~~~~~ri~vl~Sg~g~~l~~ll~ 114 (292)
T 3lou_A 86 --QWAIH--DVAARPKVLIMVSKLEHCLADLLF 114 (292)
T ss_dssp --EEEEE--ETTSCCEEEEEECSCCHHHHHHHH
T ss_pred --EEEee--ccCCCCEEEEEEcCCCcCHHHHHH
Confidence 22111 2455678888866443 2334444
No 12
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=96.83 E-value=0.0015 Score=58.04 Aligned_cols=101 Identities=18% Similarity=0.268 Sum_probs=64.8
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhccc
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFSA 127 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~sa 127 (208)
..++|.|.||||+.+.|++.|.++|..|..+.-.+. +..+.|+++-.......+. -.+.|+++|..+-++...
T Consensus 23 ~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d--~~~g~FfMr~~~~~~~~~~-----~~~~L~~~l~~la~~l~m 95 (302)
T 3o1l_A 23 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSD--NLSGWFFMRHEIRADTLPF-----DLDGFREAFTPIAEEFSM 95 (302)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEE--TTTTEEEEEEEEEGGGSSS-----CHHHHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEec--CCCCeEEEEEEEecCCCCC-----CHHHHHHHHHHHHHHhCC
Confidence 447799999999999999999999999998887754 2335677765332111111 146788888776444322
Q ss_pred chhhhcCCCCCCCcceeccccCCCCCC-CCccc
Q 037071 128 TEEFLLGAKLSNKRRRVSLFDSSLSSS-SDYLW 159 (208)
Q Consensus 128 s~e~s~~~~~~~KR~R~s~~~ss~ss~-~~~~~ 159 (208)
+.... ...++.|+-+|-|-+-|+ .+.++
T Consensus 96 --~~~l~--~~~~~~ri~vl~Sg~g~nl~~ll~ 124 (302)
T 3o1l_A 96 --DWRIT--DSAQKKRVVLMASRESHCLADLLH 124 (302)
T ss_dssp --EEEEE--ETTSCCEEEEEECSCCHHHHHHHH
T ss_pred --eeeec--ccCCCcEEEEEEeCCchhHHHHHH
Confidence 22211 234567888887655433 44454
No 13
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=96.76 E-value=0.0015 Score=57.59 Aligned_cols=99 Identities=25% Similarity=0.397 Sum_probs=62.7
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhccc
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFSA 127 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~sa 127 (208)
..++|.|.||||+.+.|++.|.++|..|......+ ....+.|+++-.......+ .+.++++|..+-++...
T Consensus 8 ~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~--d~~~g~Ffmr~~~~~~~~~-------~~~L~~~f~~la~~~~m 78 (287)
T 3nrb_A 8 YVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFN--DEDSSKFFMRVSVEIPVAG-------VNDFNSAFGKVVEKYNA 78 (287)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTTTEEEEEEEEECCC----------CHHHHHHHHHHGGGTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeee--cCCCCeEEEEEEEEcCCCC-------HHHHHHHHHHHHHHcCC
Confidence 34679999999999999999999999999877753 3445678886543221111 34777777766444322
Q ss_pred chhhhcCCCCCCCcceeccccCCCCC-CCCccc
Q 037071 128 TEEFLLGAKLSNKRRRVSLFDSSLSS-SSDYLW 159 (208)
Q Consensus 128 s~e~s~~~~~~~KR~R~s~~~ss~ss-~~~~~~ 159 (208)
+.... ...++.|+-+|-|-+-| ..+.++
T Consensus 79 --~~~l~--~~~~~~ri~vl~Sg~g~nl~~ll~ 107 (287)
T 3nrb_A 79 --EWWFR--PRTDRKKVVIMVSKFDHCLGDLLY 107 (287)
T ss_dssp --EEEEE--ETTCCCEEEEEECSCCHHHHHHHH
T ss_pred --eeEee--ccCCCcEEEEEEeCCCcCHHHHHH
Confidence 11111 23556788888665433 234444
No 14
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=95.79 E-value=0.026 Score=46.09 Aligned_cols=64 Identities=11% Similarity=0.184 Sum_probs=49.0
Q ss_pred EEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecC--CeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHh
Q 037071 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE--GSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLD 123 (208)
Q Consensus 49 rasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlG--GRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe 123 (208)
.++|-++||||+|++|+++|.+.|..|...-+.+-. |..+-+|.|.. |. ..++.|.++|..+.+
T Consensus 5 ~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~-------d~----~~leqI~kqL~Kl~d 70 (164)
T 2f1f_A 5 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG-------DE----KVLEQIEKQLHKLVD 70 (164)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES-------CH----HHHHHHHHHHHHSTT
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec-------cH----HHHHHHHHHHcCCCC
Confidence 356889999999999999999999999988886443 56666777742 22 247788888887654
No 15
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=95.38 E-value=0.072 Score=43.59 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=49.5
Q ss_pred EEEEecCCCCCchHHHHHHHHhcCCeeEeeEEee-c-CCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHh
Q 037071 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIAT-L-EGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLD 123 (208)
Q Consensus 49 rasVcCdDRPGLLSDLtRALreL~L~ivRAEIaT-l-GGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe 123 (208)
.++|-.+||||+|++|+++|.+.|..|...-+++ - .|..+-+|.|.+ |. ..++.|.++|..+.+
T Consensus 6 ~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~-------d~----~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 6 IISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG-------PD----EIVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE-------CH----HHHHHHHHHHHHSTT
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec-------cH----HHHHHHHHHhcCCCC
Confidence 4568899999999999999999999999888864 4 366777777742 12 247888888887755
No 16
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=93.90 E-value=0.095 Score=45.25 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=30.0
Q ss_pred EEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecC
Q 037071 47 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLE 84 (208)
Q Consensus 47 ~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlG 84 (208)
.+.+.+.+.||||+|+||+++|.+.+..|......+-.
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 35667999999999999999999999999999998854
No 17
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=92.29 E-value=0.42 Score=40.25 Aligned_cols=65 Identities=9% Similarity=0.257 Sum_probs=48.4
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEe-ecC-CeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHh
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA-TLE-GSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLD 123 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIa-TlG-GRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe 123 (208)
-.++|..+|+||.|++|++.|...|..|..--++ |-. |..+=+|.|.+. + ..++.|.++|..+++
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e-----~~ieqL~kQL~KLid 96 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------D-----KTIEQIEKQAYKLVE 96 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------T-----THHHHHHHHHTTSTT
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------H-----HHHHHHHHHhcCcCc
Confidence 3467888999999999999999999999876664 444 556666677432 1 147888888887654
No 18
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=89.07 E-value=1.1 Score=33.93 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=29.9
Q ss_pred EecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEE
Q 037071 52 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIF 91 (208)
Q Consensus 52 VcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVF 91 (208)
+.-.|+||.++++.++|.+.|+.|...-...-+++..-+|
T Consensus 77 v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i 116 (144)
T 2f06_A 77 ISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI 116 (144)
T ss_dssp EEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE
Confidence 4568999999999999999999997655442345444444
No 19
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=80.82 E-value=5.3 Score=30.07 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=29.5
Q ss_pred EEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEe
Q 037071 47 SIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIA 81 (208)
Q Consensus 47 ~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIa 81 (208)
.-+++|.-+|+||.|++|+++|.+.|..+-.--+.
T Consensus 6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~ 40 (144)
T 2f06_A 6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIA 40 (144)
T ss_dssp EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEE
Confidence 35667888999999999999999999988765554
No 20
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=77.54 E-value=1.6 Score=40.36 Aligned_cols=31 Identities=32% Similarity=0.582 Sum_probs=27.2
Q ss_pred ceEEEEEEecCCCCCchHHHHHHHHhcCCeeEe
Q 037071 45 PYSIKASLCCNYKPGLLSDLRRVLEALHLSIVK 77 (208)
Q Consensus 45 ~~~irasVcCdDRPGLLSDLtRALreL~L~ivR 77 (208)
.+|+| +.+.|+||.|++|+.+|.++++++..
T Consensus 359 ~yy~r--~~~~d~~gvl~~i~~~~~~~~isi~~ 389 (444)
T 3mtj_A 359 AYYLR--LRAFDRPGVLADITRILADSSISIDA 389 (444)
T ss_dssp EEEEE--EEEC-CCHHHHHHHHHHHHTTCCEEE
T ss_pred eeEEE--EEecCcccHHHHHHHHHHhcCCceeE
Confidence 57888 88999999999999999999998755
No 21
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=74.84 E-value=8.8 Score=33.51 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=39.8
Q ss_pred eEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCe-eEEEEEEeeccCcCccCh
Q 037071 46 YSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGS-MKNIFVMASCKELNFENT 104 (208)
Q Consensus 46 ~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGR-aknVFyVtd~~gg~~~D~ 104 (208)
+.+-.++ .|+||-|+++-..|...|+.+++=|=--..++ -.-+||| |+. |..+|+
T Consensus 201 tsl~f~~--~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffv-D~e-g~~~d~ 256 (283)
T 2qmx_A 201 TSIVFAL--PNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYA-DFI-GHREDQ 256 (283)
T ss_dssp EEEEEEE--ECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEE-EEE-SCTTSH
T ss_pred EEEEEEc--CCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEE-EEe-cCCCcH
Confidence 4455334 69999999999999999999999887555554 5567777 444 444454
No 22
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=70.77 E-value=31 Score=30.73 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=41.1
Q ss_pred CCCCCchHHHHHHHHhcCCeeEeeEEeecCCee-EEEEEEeeccCcCccChHHHHHHHHHHHHHHHHH
Q 037071 55 NYKPGLLSDLRRVLEALHLSIVKAEIATLEGSM-KNIFVMASCKELNFENTEVCQSLVSSVHQAIRSV 121 (208)
Q Consensus 55 dDRPGLLSDLtRALreL~L~ivRAEIaTlGGRa-knVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~v 121 (208)
.|+||-|+++=..|...|+.++|=|=--..++. .=+||| |.. |...|+ .+++||..+
T Consensus 216 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~e-g~~~d~--------~v~~AL~~L 273 (329)
T 3luy_A 216 VTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLD-AAPWEE--------RFRDALVEI 273 (329)
T ss_dssp CCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EES-SCTTSH--------HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEe-CCcCCH--------HHHHHHHHH
Confidence 489999999999999999999998876555554 566776 544 444454 455555554
No 23
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=67.91 E-value=22 Score=31.51 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=37.2
Q ss_pred Eec-CCCCCchHHHHHHHHhcCCeeEeeEEeecCCe-eEEEEEEeeccCcCccCh
Q 037071 52 LCC-NYKPGLLSDLRRVLEALHLSIVKAEIATLEGS-MKNIFVMASCKELNFENT 104 (208)
Q Consensus 52 VcC-dDRPGLLSDLtRALreL~L~ivRAEIaTlGGR-aknVFyVtd~~gg~~~D~ 104 (208)
+.. .|+||-|+++-..|...|+.++|=|=--..++ -.-+||| |.. |...|+
T Consensus 206 f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~e-g~~~d~ 258 (313)
T 3mwb_A 206 VPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSI-DAD-GHATDS 258 (313)
T ss_dssp EECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEE-EEE-SCTTSH
T ss_pred EEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEE-EEe-CCCCcH
Confidence 455 49999999999999999999998886544444 3567777 444 444454
No 24
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=66.91 E-value=18 Score=31.27 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=36.6
Q ss_pred eEEEEEEec---CCCCCchHHHHHHHHhcCCeeEeeEEeecCCe-eEEEEEEe
Q 037071 46 YSIKASLCC---NYKPGLLSDLRRVLEALHLSIVKAEIATLEGS-MKNIFVMA 94 (208)
Q Consensus 46 ~~irasVcC---dDRPGLLSDLtRALreL~L~ivRAEIaTlGGR-aknVFyVt 94 (208)
+.+- +.. .|+||-|+++-..|...|+.+++=|=--..++ -.-.|||.
T Consensus 187 tsl~--f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD 237 (267)
T 2qmw_A 187 TSLM--FLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQ 237 (267)
T ss_dssp SEEE--EEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEE
T ss_pred EEEE--EEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEE
Confidence 4444 555 79999999999999999999999887555444 45678884
No 25
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=65.82 E-value=42 Score=25.54 Aligned_cols=83 Identities=12% Similarity=0.243 Sum_probs=48.9
Q ss_pred EecCCCCCchHHHHHHHHhc--CC---eeEeeEEeecCCee-EEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 52 LCCNYKPGLLSDLRRVLEAL--HL---SIVKAEIATLEGSM-KNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 52 VcCdDRPGLLSDLtRALreL--~L---~ivRAEIaTlGGRa-knVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
...+--++-+.+|.++|.+. +. .+.-..+.++++.- -+|+|+.-.. +. .+..|+++|...+.+.
T Consensus 45 flg~~~~~~~~~l~~~l~~~~~~~~pf~l~l~g~g~F~~~~~p~vl~~~v~~-----~~-----~L~~L~~~l~~~l~~~ 114 (184)
T 1vgj_A 45 FLGEITEEQAEEIKNILKKIAEKYKKHEVKVKGIGVFPNPNYIRVIWAGIEN-----DE-----IIREMAREIEDELAKL 114 (184)
T ss_dssp EEESCCHHHHHHHHHHHHHHHTTSBCEEEEEEEEEEEECSSSEEEEEEEEET-----CH-----HHHHHHHHHHHHHHTT
T ss_pred eecCCCHHHHHHHHHHHHHHHccCCCeEEEEeeEeeCCCCCCCcEEEEEecC-----CH-----HHHHHHHHHHHHHHHc
Confidence 34443455677788888777 44 44444555665532 2688885422 12 2677888887776432
Q ss_pred ccchhhhcCCCCCCCcceeccccCCCCCCCCcccccceeeecccc
Q 037071 126 SATEEFLLGAKLSNKRRRVSLFDSSLSSSSDYLWHPRITISRLRP 170 (208)
Q Consensus 126 sas~e~s~~~~~~~KR~R~s~~~ss~ss~~~~~~~~~~~~~~~~~ 170 (208)
++ + .++ -|+|-|||-|...
T Consensus 115 ----g~--------~-------------~~~-~f~PHiTLar~~~ 133 (184)
T 1vgj_A 115 ----GF--------K-------------KEG-NFVAHITLGRVKF 133 (184)
T ss_dssp ----TC--------C-------------CCC-CCCCEEEEEEEEE
T ss_pred ----CC--------C-------------CCC-CccceEEEEeecc
Confidence 11 0 012 5799999998764
No 26
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=59.29 E-value=42 Score=24.29 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=37.0
Q ss_pred eEEEEEEecCCC-CCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEee
Q 037071 46 YSIKASLCCNYK-PGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMAS 95 (208)
Q Consensus 46 ~~irasVcCdDR-PGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd 95 (208)
..+++.+..+.- .-++++|++.+ .+...|+.|.|..++|+....++|.=
T Consensus 21 ~lvrL~f~g~~~~~PvIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l 70 (98)
T 3ced_A 21 YIVRLVFAGSTTTEPIVSSLSTAY-DIKINILEANIKNTKNGTVGFLVLHI 70 (98)
T ss_dssp EEEEEEEEEESCHHHHHHHHHHHH-TCCCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEECCCccCchHHHHHHHHH-CCcEEEEEEEeEEeCCEeEEEEEEEE
Confidence 356665654333 34677777776 47889999999999999999999954
No 27
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=58.94 E-value=37 Score=26.30 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=37.8
Q ss_pred EEEEEecCC---CCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHH
Q 037071 48 IKASLCCNY---KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAI 118 (208)
Q Consensus 48 irasVcCdD---RPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL 118 (208)
..++|-+.+ +||.++.+.++|.+.++.+.- |+| ....-.|+|.. .|.+ +.+..|++++
T Consensus 104 a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~--ist--se~~is~vv~~------~d~~---~av~~Lh~~f 164 (167)
T 2re1_A 104 CKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQM--IST--SEIKVSVLIDE------KYME---LATRVLHKAF 164 (167)
T ss_dssp EEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCE--EEE--CSSEEEEEEEG------GGHH---HHHHHHHHHT
T ss_pred EEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEE--EEc--ccCEEEEEEeH------HHHH---HHHHHHHHHh
Confidence 345566665 999999999999999998876 565 22334444422 1222 3566777664
No 28
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=57.57 E-value=25 Score=31.75 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=38.9
Q ss_pred EEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEE
Q 037071 49 KASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVM 93 (208)
Q Consensus 49 rasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyV 93 (208)
++-+.-.|+||.+..|+.+|-+.++.|..-...+-|+.+--++-|
T Consensus 333 rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv 377 (404)
T 1sc6_A 333 RLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI 377 (404)
T ss_dssp EEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence 344677899999999999999999999999999988877666665
No 29
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=56.97 E-value=32 Score=24.70 Aligned_cols=49 Identities=8% Similarity=0.119 Sum_probs=38.5
Q ss_pred eEEEEEEecCCC-CCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEee
Q 037071 46 YSIKASLCCNYK-PGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMAS 95 (208)
Q Consensus 46 ~~irasVcCdDR-PGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd 95 (208)
..+++.+..+.- .-++++|++.| .+...|+.|.|..++|+....|+|.=
T Consensus 24 ~lv~l~f~g~~~~~pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v~l 73 (100)
T 2qsw_A 24 KIVRLLFHGEQAKLPIISHIVQEY-QVEVSIIQGNIQQTKQGAVGSLYIQL 73 (100)
T ss_dssp EEEEEEEESCSCSSCHHHHHHHHH-TCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEcCCCcCchHHHHHHHHh-CCCEEEEEeeceEcCCeeEEEEEEEE
Confidence 468877766443 45778887777 47789999999999999999999954
No 30
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=56.38 E-value=20 Score=26.26 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=36.7
Q ss_pred eEEEEEEecCCC-CCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEe
Q 037071 46 YSIKASLCCNYK-PGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMA 94 (208)
Q Consensus 46 ~~irasVcCdDR-PGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVt 94 (208)
..+++.+..+.- -.++|++++.+. ...+|+.|.|..++|.....++|.
T Consensus 22 ~lvrL~f~g~~~~~PiIs~l~~~~~-v~vnIL~g~I~~i~~~~~G~L~v~ 70 (106)
T 3dhx_A 22 PMLRLEFTGQSVDAPLLSETARRFN-VNNNIISAQMDYAGGVKFGIMLTE 70 (106)
T ss_dssp EEEEEEEEEECTTCCHHHHHHHHSC-CEEEEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEEEEcCCccChhHHHHHHHHHC-CCEEEEEEEeEEECCeeEEEEEEE
Confidence 567777765432 337777777663 567999999999999999999994
No 31
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=50.89 E-value=88 Score=24.50 Aligned_cols=62 Identities=6% Similarity=0.036 Sum_probs=35.3
Q ss_pred EecCCCCCchHHHHHHHHhc-----CCeeEeeEEeecCCee-EEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhh
Q 037071 52 LCCNYKPGLLSDLRRVLEAL-----HLSIVKAEIATLEGSM-KNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDK 124 (208)
Q Consensus 52 VcCdDRPGLLSDLtRALreL-----~L~ivRAEIaTlGGRa-knVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~ 124 (208)
...+--++-+.+|.++|.++ ...+.-..+.++++.- -+|+|+.- . .. .+..|+++|...+.+
T Consensus 44 flgev~~~~~~~l~~~l~~~~~~~~pf~l~l~g~g~F~~~~~p~vl~l~v-~-----~~-----~L~~L~~~l~~~l~~ 111 (198)
T 1iuh_A 44 FLGERPEEELPDYLALGHRLARLEAPFRARLRGTGYFPNEGTPRVWFAKA-E-----AE-----GFLRLAEGLRAGVEE 111 (198)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHHSCCEEEEEEEEEEESSSSSCSEEEEEE-E-----CH-----HHHHHHHHHHHHHHH
T ss_pred eCCcCCHHHHHHHHHHHHHHhccCCCeEEEEcceEECCCCCCCCEEEEEC-C-----CH-----HHHHHHHHHHHHHHH
Confidence 34443455677777777665 3455556677777642 25888754 1 12 255666666666543
No 32
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=49.90 E-value=33 Score=24.61 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=36.0
Q ss_pred eEEEEEEecCCC-CCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEee
Q 037071 46 YSIKASLCCNYK-PGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMAS 95 (208)
Q Consensus 46 ~~irasVcCdDR-PGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd 95 (208)
..+++.+..+.- .-+++++++.| .+..+|+.|.|..++|+....|+|.=
T Consensus 24 ~lv~l~f~g~~~~~pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v~l 73 (101)
T 2qrr_A 24 PLVRMEFTGATVDAPLMSQISRKY-NIDVSILSSDLDYAGGVKFGMMVAEL 73 (101)
T ss_dssp EEEEEEECTTSCSSCHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEcCCCcCchHHHHHHHHh-CCCEEEEEeeeeEcCCeeEEEEEEEE
Confidence 467766655433 34666666655 35678999999999999999999954
No 33
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=43.32 E-value=61 Score=25.43 Aligned_cols=57 Identities=18% Similarity=0.362 Sum_probs=38.1
Q ss_pred EEEecC---CCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHH
Q 037071 50 ASLCCN---YKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIR 119 (208)
Q Consensus 50 asVcCd---DRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~ 119 (208)
++|-+. ++||.++.+.++|.+.++.+.- |+|-. ..-.|+| +. .|.+ ..+.+|++++.
T Consensus 98 VsvVG~gm~~~~Gv~arif~aLa~~~InI~~--istSe--~~Is~vV-~~-----~d~~---~Av~~Lh~~F~ 157 (178)
T 2dtj_A 98 VSLVGAGMKSHPGVTAEFMEALRDVNVNIEL--ISTSE--IRISVLI-RE-----DDLD---AAARALHEQFQ 157 (178)
T ss_dssp EEEEEECCTTCHHHHHHHHHHHHHTTCCCCE--EEEET--TEEEEEE-EG-----GGHH---HHHHHHHHHHT
T ss_pred EEEEcCCcccCccHHHHHHHHHHHCCCCEEE--EEcCC--CeEEEEE-eH-----HHHH---HHHHHHHHHHc
Confidence 345554 8999999999999999998866 55443 3344555 21 1332 46777887764
No 34
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=43.21 E-value=79 Score=24.31 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=35.5
Q ss_pred EEEecCC---CCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHH
Q 037071 50 ASLCCNY---KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAI 118 (208)
Q Consensus 50 asVcCdD---RPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL 118 (208)
++|-+.+ +||.++.+.++|.+.++.+. -|+|- + .+=.|+|.. . |.+ +.+.+|++++
T Consensus 98 vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~--~is~S-e-~~is~vv~~-~-----d~~---~Av~~Lh~~f 156 (167)
T 2dt9_A 98 VSIVGVGLASTPEVPAKMFQAVASTGANIE--MIATS-E-VRISVIIPA-E-----YAE---AALRAVHQAF 156 (167)
T ss_dssp EEEEESSGGGSTHHHHHHHHHHHHTTCCCC--EEEEC-S-SEEEEEEEG-G-----GHH---HHHHHHHHHT
T ss_pred EEEECCCcccCcCHHHHHHHHHHHCCCCEE--EEEcc-C-CEEEEEEeH-H-----HHH---HHHHHHHHHH
Confidence 5566655 99999999999999999882 23433 2 344455522 1 222 3566666654
No 35
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=40.44 E-value=1.4e+02 Score=25.78 Aligned_cols=85 Identities=12% Similarity=0.108 Sum_probs=51.2
Q ss_pred EEEecCC-CCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEE-EEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhccc
Q 037071 50 ASLCCNY-KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNI-FVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFSA 127 (208)
Q Consensus 50 asVcCdD-RPGLLSDLtRALreL~L~ivRAEIaTlGGRaknV-FyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~sa 127 (208)
++|-..| +||++.+|++.|.++++.+.....-+- .-...+ |+|.... .+ .+.++++|....+.-.
T Consensus 104 ~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~-~~~~~~~~~v~~~~----~~-------~~~l~~~l~~l~~~~~- 170 (415)
T 3p96_A 104 IFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSD-YPVIGLELRVSVPP----GA-------DEALRTALNRVSSEEH- 170 (415)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEES-SSSEEEEEEEECCT----TC-------HHHHHHHHHHHHHHHT-
T ss_pred EEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccC-CCceEEEEEeeCCC----CC-------HHHHHHHHHHHhhhcC-
Confidence 3477788 999999999999999999876665552 223344 6663321 22 3566667766654432
Q ss_pred chhhhc-CCCCCCCcceecccc
Q 037071 128 TEEFLL-GAKLSNKRRRVSLFD 148 (208)
Q Consensus 128 s~e~s~-~~~~~~KR~R~s~~~ 148 (208)
.|... ......+..|.-+||
T Consensus 171 -vD~~v~~~~~~~~~~k~viFD 191 (415)
T 3p96_A 171 -VDVAVEDYTLERRAKRLIVFD 191 (415)
T ss_dssp -CEEEEEECSTTTTCCCEEEEC
T ss_pred -cCcccccccccccCCcEEEEc
Confidence 23221 112234556666666
No 36
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=37.88 E-value=98 Score=21.91 Aligned_cols=45 Identities=7% Similarity=0.006 Sum_probs=31.3
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCe-eEeeEEeecCCeeEEEEEEeeccCc
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLS-IVKAEIATLEGSMKNIFVMASCKEL 99 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~-ivRAEIaTlGGRaknVFyVtd~~gg 99 (208)
+.+.+.++| +..+.+.|.++|.. ++..-...-.|+. ||+.|..|.
T Consensus 68 ~~l~f~v~d----vd~~~~~l~~~G~~~~~~~p~~~~~G~~---~~~~DPdGn 113 (128)
T 3g12_A 68 LQLGFQITD----LEKTVQELVKIPGAMCILDPTDMPDGKK---AIVLDPDGH 113 (128)
T ss_dssp EEEEEEESC----HHHHHHHHTTSTTCEEEEEEEECC-CEE---EEEECTTCC
T ss_pred eEEEEEeCC----HHHHHHHHHHCCCceeccCceeCCCccE---EEEECCCCC
Confidence 334577888 78888999999999 7764343334433 999998754
No 37
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=36.63 E-value=53 Score=25.14 Aligned_cols=39 Identities=10% Similarity=-0.124 Sum_probs=27.6
Q ss_pred CCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEee
Q 037071 57 KPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMAS 95 (208)
Q Consensus 57 RPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd 95 (208)
||.-+.++..||.+.|....+...+.-++|-.++=+...
T Consensus 14 rp~kld~V~~AL~~~G~~~t~v~~~gGf~r~g~~~leiv 52 (114)
T 3m05_A 14 QDKDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMIG 52 (114)
T ss_dssp EHHHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEeccccccCCEEEEEE
Confidence 788999999999999999765544443346555544433
No 38
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=35.39 E-value=1.6e+02 Score=27.15 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=35.6
Q ss_pred EecCCCCCchHHHHHHHHhcCCeeEeeEEee--cCCeeEEEEEE
Q 037071 52 LCCNYKPGLLSDLRRVLEALHLSIVKAEIAT--LEGSMKNIFVM 93 (208)
Q Consensus 52 VcCdDRPGLLSDLtRALreL~L~ivRAEIaT--lGGRaknVFyV 93 (208)
+.-.|+||.+..|+..|-+.++.|..-.+.- .||.+.-++.|
T Consensus 459 v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v 502 (529)
T 1ygy_A 459 IHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL 502 (529)
T ss_dssp EEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred EEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE
Confidence 5678999999999999999999999988865 47777666666
No 39
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=34.60 E-value=83 Score=23.57 Aligned_cols=74 Identities=9% Similarity=0.167 Sum_probs=44.4
Q ss_pred CchHHHHHHHHhc-----CCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhcccchhhhc
Q 037071 59 GLLSDLRRVLEAL-----HLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKFSATEEFLL 133 (208)
Q Consensus 59 GLLSDLtRALreL-----~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~sas~e~s~ 133 (208)
+-+.+|.++|.++ ...+.-..+.+++.| .+|+|+.-.. ++ .+..|+++|...+...
T Consensus 46 ~~~~~l~~~l~~~~~~~~pf~l~l~~~g~F~~~-~~vl~l~~~~-----~~-----~L~~L~~~l~~~~~~~-------- 106 (171)
T 2d4g_A 46 EKADQLVSHLRNIAKESHPLVLKMTKYSSFAPV-NNVIYIKAEP-----TE-----ELKTLNEKLYTGVLAG-------- 106 (171)
T ss_dssp GGHHHHHHHHHHHHHTCCCEEEEEEEEEECTTT-CCCEEEEECC-----CH-----HHHHHHHHTTSGGGCS--------
T ss_pred HHHHHHHHHHHHHHccCCCEEEEECCcEEeCCC-CcEEEEEccC-----Ch-----HHHHHHHHHHhccccc--------
Confidence 3466666666655 345555566777655 3688885422 22 2567777766654210
Q ss_pred CCCCCCCcceeccccCCCCCCCCcccccceeeecccch
Q 037071 134 GAKLSNKRRRVSLFDSSLSSSSDYLWHPRITISRLRPS 171 (208)
Q Consensus 134 ~~~~~~KR~R~s~~~ss~ss~~~~~~~~~~~~~~~~~~ 171 (208)
.++.-|+|-|||.|..+.
T Consensus 107 --------------------~~~~~f~PHiTLar~~~~ 124 (171)
T 2d4g_A 107 --------------------EQEYNFVPHVTVGQNLSD 124 (171)
T ss_dssp --------------------CCCSCCCCEEEEECSCCH
T ss_pred --------------------ccCCCCCCeEEeecCCCH
Confidence 123469999999987654
No 40
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=32.95 E-value=1e+02 Score=28.72 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=36.0
Q ss_pred ceEEEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCC-eeEEEEEE
Q 037071 45 PYSIKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEG-SMKNIFVM 93 (208)
Q Consensus 45 ~~~irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGG-RaknVFyV 93 (208)
.+.+- +...|+||-|+++-..|..+|+.+++=|=--..+ .-.-+|||
T Consensus 34 KTSLi--Fsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfV 81 (429)
T 1phz_A 34 AISLI--FSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT 81 (429)
T ss_dssp CEEEE--EEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE
T ss_pred eEEEE--EEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEE
Confidence 35555 4447899999999999999999999887754443 35677777
No 41
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=32.90 E-value=67 Score=29.35 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=41.4
Q ss_pred EEEec---CCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHH
Q 037071 50 ASLCC---NYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIR 119 (208)
Q Consensus 50 asVcC---dDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~ 119 (208)
++|-+ .++||.++.+.++|.+.++.+ .+-+.|..-.++-+|-+.. |.+ +.+.+||+++.
T Consensus 407 vsvVG~gm~~~~Gvaak~f~aL~~~~InI---~misqgtSe~~Is~vV~~~-----d~~---~Av~aLh~~f~ 468 (473)
T 3c1m_A 407 ISVVGAGMRGAKGIAGKIFTAVSESGANI---KMIAQGSSEVNISFVIDEK-----DLL---NCVRKLHEKFI 468 (473)
T ss_dssp EEEECTTTTTCTTHHHHHHHHHHHHTCCC---CEEEESSCSSEEEEEEEGG-----GHH---HHHHHHHHHHT
T ss_pred EEEEecCCCCChhHHHHHHHHHHHCCCCE---EEEecCCCCceEEEEEcHH-----HHH---HHHHHHHHHHh
Confidence 34555 468999999999999999988 6667776655665554432 222 46778887764
No 42
>3r6a_A Uncharacterized protein; PSI biology, structural genomics, NEW YORK structural genomi research consortium, putative glyoxalase I; 1.76A {Methanosarcina mazei}
Probab=29.51 E-value=1.6e+02 Score=21.43 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=31.0
Q ss_pred EecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCc
Q 037071 52 LCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKEL 99 (208)
Q Consensus 52 VcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg 99 (208)
+.++| +.++.+.|.+.|..+...-..+-+|| .||+.|..|.
T Consensus 71 f~V~d----~d~~~~~l~~~G~~v~~~p~~~~~G~---~~~~~DPdG~ 111 (144)
T 3r6a_A 71 FLVDS----LDKFKTFLEENGAEIIRGPSKVPTGR---NMTVRHSDGS 111 (144)
T ss_dssp EEESC----HHHHHHHHHHTTCEEEEEEEEETTEE---EEEEECTTSC
T ss_pred EEeCC----HHHHHHHHHHcCCEEecCCccCCCce---EEEEECCCCC
Confidence 55666 67788889999999887766666664 5899997753
No 43
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=29.41 E-value=91 Score=23.31 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=33.2
Q ss_pred CchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeeccCcCccChHHHHHHHHHHHHHHHHHHhhc
Q 037071 59 GLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASCKELNFENTEVCQSLVSSVHQAIRSVLDKF 125 (208)
Q Consensus 59 GLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~~gg~~~D~~~~~~~~~sVrqAL~~vLe~~ 125 (208)
-+|-++-+.+|.+... -..|++++++++++++.||-.++++.
T Consensus 43 ~Flqel~~l~R~iP~~-------------------------vf~d~e~R~~lL~a~Q~AlD~aI~~E 84 (92)
T 1xl3_C 43 RFYQDLXRMFRLFPLG-------------------------VFSDEEQRQNLLQMCQNAIDMAIESE 84 (92)
T ss_dssp HHHHHHHHHHHTSCGG-------------------------GSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHH-------------------------hcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777762 24578889999999999999999874
No 44
>2ebe_A Hypothetical protein TTHA0061; struct genomics, unknown function, NPPSFA, national project on Pro structural and functional analyses; 1.80A {Thermus thermophilus} PDB: 2ebg_A 2ei5_A*
Probab=27.08 E-value=12 Score=28.69 Aligned_cols=8 Identities=63% Similarity=1.763 Sum_probs=6.1
Q ss_pred Ccccccce
Q 037071 156 DYLWHPRI 163 (208)
Q Consensus 156 ~~~~~~~~ 163 (208)
.|+|||+-
T Consensus 9 GYlW~Pr~ 16 (106)
T 2ebe_A 9 GYMWHPRA 16 (106)
T ss_dssp EEEEEETT
T ss_pred cccccccc
Confidence 48899874
No 45
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=26.71 E-value=2.4e+02 Score=25.69 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=38.2
Q ss_pred EEEEEecCCCCCchHHHHHHHHhcCCeeEeeEEeecCCeeEEEEEEeec
Q 037071 48 IKASLCCNYKPGLLSDLRRVLEALHLSIVKAEIATLEGSMKNIFVMASC 96 (208)
Q Consensus 48 irasVcCdDRPGLLSDLtRALreL~L~ivRAEIaTlGGRaknVFyVtd~ 96 (208)
.|+.+.=.|+||.|..|..+|.+.++.|..=--.|.|+-+ +.|.|.
T Consensus 344 ~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~---y~~~d~ 389 (416)
T 3k5p_A 344 TRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVG---YLVMEA 389 (416)
T ss_dssp EEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCE---EEEEEE
T ss_pred eEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceE---EEEEEe
Confidence 5666888999999999999999999999988888888854 444453
No 46
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=25.54 E-value=48 Score=25.62 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=29.3
Q ss_pred EEEEe-cCCCCCchHHHHHHHHhcCCeeEeeEEe-ecCCeeEEEEEE
Q 037071 49 KASLC-CNYKPGLLSDLRRVLEALHLSIVKAEIA-TLEGSMKNIFVM 93 (208)
Q Consensus 49 rasVc-CdDRPGLLSDLtRALreL~L~ivRAEIa-TlGGRaknVFyV 93 (208)
.++|. -.|+||.+++|.++|.+.++.+----.+ +.+|..-=.|+|
T Consensus 27 ~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v 73 (167)
T 2re1_A 27 RINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTV 73 (167)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEE
T ss_pred EEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEE
Confidence 34465 4899999999999999999976533222 112333445666
No 47
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=23.66 E-value=32 Score=24.34 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=15.5
Q ss_pred ChhhHhhHHHHHHHHHHh
Q 037071 1 MCEKRVDDVKELDKNATE 18 (208)
Q Consensus 1 lLAeVI~~VKELK~~Aae 18 (208)
+|..+|+++|.|+++++=
T Consensus 46 IL~~aI~yik~Lq~~~~~ 63 (71)
T 4h10_B 46 VLQKSIDFLRKHKEITAW 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhH
Confidence 378899999999998864
No 48
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=23.05 E-value=2.5e+02 Score=21.35 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=20.6
Q ss_pred CCCCCchHHHHHHHHhcCCeeEe
Q 037071 55 NYKPGLLSDLRRVLEALHLSIVK 77 (208)
Q Consensus 55 dDRPGLLSDLtRALreL~L~ivR 77 (208)
.|+||.+++|.++|.+.++.+--
T Consensus 25 ~~~~G~~a~if~~La~~~InVd~ 47 (167)
T 2dt9_A 25 PDQPGIAAKVFQALAERGIAVDM 47 (167)
T ss_dssp ECSTTHHHHHHHHHHHHTCCCSC
T ss_pred CCCCCHHHHHHHHHHHcCCcEEE
Confidence 89999999999999999987653
No 49
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=21.28 E-value=41 Score=20.76 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=11.9
Q ss_pred cceeccccCC-CCCCCCcccccce
Q 037071 141 RRRVSLFDSS-LSSSSDYLWHPRI 163 (208)
Q Consensus 141 R~R~s~~~ss-~ss~~~~~~~~~~ 163 (208)
|--+|.-.|| |||-++-+|.|.-
T Consensus 11 rtdistssssissseendfwqpkp 34 (35)
T 2lic_A 11 RTDISTSSSSISSSEENDFWQPKP 34 (35)
T ss_dssp SSSSCSCSSCCSTTCSCSSCCCCC
T ss_pred hhccccccccccccccccccCCCC
Confidence 3334443333 3344566799864
No 50
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=20.79 E-value=2.2e+02 Score=22.07 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=20.9
Q ss_pred ecCCCCCchHHHHHHHHhcCCeeE
Q 037071 53 CCNYKPGLLSDLRRVLEALHLSIV 76 (208)
Q Consensus 53 cCdDRPGLLSDLtRALreL~L~iv 76 (208)
.-.|+||.+++|.++|.+.++.+-
T Consensus 22 ~~~~~~G~~a~if~~La~~~InId 45 (178)
T 2dtj_A 22 GISDKPGEAAKVFRALADAEINID 45 (178)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCC
T ss_pred cCCCCccHHHHHHHHHHHcCCCEE
Confidence 348999999999999999997654
Done!