BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037075
(806 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LPQ9|FPA_ARATH Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA
PE=2 SV=2
Length = 901
Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 125/246 (50%), Gaps = 32/246 (13%)
Query: 301 DFSQPEVFDKNLDAGPFGYKQIPDQQMNLALPCREKNDHW-------------RTPHDSF 347
++ +P + P G +P P R D W RT D
Sbjct: 348 NWRRPSANGTGILPSPTGPGILPSPAQGTRRPMRSNPDSWEGYDPAQLVRESKRTRRDGS 407
Query: 348 QAGFGSLPPNPVDRKKF------TPELEKPSFKEWKWEGTIAKGGTPVCRARCFPVGKVM 401
GF P VD + F + P + W G IAKGGTPVC ARC P+GK +
Sbjct: 408 VDGFT---PMGVDERSFGRGSVAARPIRGPPDSDHIWRGMIAKGGTPVCCARCVPMGKGI 464
Query: 402 DMMLPEFLDCTARTGLDMLAKHYYQASGSWVVFFVPGSDGDIGFYNEFMHYLEEKQRAAV 461
+ LPE ++C+ART L+MLAKHY A G +VFFVP + D Y EF+ YL K RA V
Sbjct: 465 ETKLPEVVNCSARTDLNMLAKHYAVAIGCEIVFFVPDREEDFASYTEFLRYLSSKDRAGV 524
Query: 462 AKLDDKTTLFLVPPSEFSEKVLKVPGKLSISGVVLRLEPPG------YNQ----GPIHHP 511
AKLDD TTLFLVPPS+F VL+V + + GVVL+L PP Y Q P+H+
Sbjct: 525 AKLDDGTTLFLVPPSDFLTDVLQVTRQERLYGVVLKLPPPAVPVTASYRQESQSNPLHYM 584
Query: 512 NELKDA 517
++ +D+
Sbjct: 585 DQARDS 590
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
Query: 50 NAEPSEVLWIGFP--ALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRA 107
+ +PS+VLWIGFP A DE IL A FGEIE++ +P R++A V+FRS A +
Sbjct: 201 DVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEARQC 260
Query: 108 KETLQGKLFGNPRVHICFAKSE 129
KE LQG+LF NPR+ I ++ E
Sbjct: 261 KEGLQGRLFNNPRIKIMYSNDE 282
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQG 113
S LW+G + E L + F +G+I++ITV+ R +AF+ +R + A AKE LQG
Sbjct: 17 SNNLWVG-SLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQG 75
Query: 114 KLFGNPRVHICFAK 127
++ I +A+
Sbjct: 76 ANLNGSQIKIEYAR 89
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 51 AEPSEVLWIGF--PALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAK 108
A+P + LW+G P + K D L + FS FG+IE R AF+ + + A +AK
Sbjct: 91 AKPCKSLWVGGIGPNVSKDD---LEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQAK 147
Query: 109 ETLQGKLFGNPRVHICFAKSEA 130
++ GK G + + F +S+A
Sbjct: 148 -SMNGKPMGGSFLRVDFLRSQA 168
>sp|Q9P6M8|PABPX_SCHPO mRNA export factor crp79 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=crp79 PE=2 SV=2
Length = 710
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 72 LRKAFSPFGEI--EKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125
L FSPFG I + +P + Y FV FR I +A RAK+TL G + G R+ +CF
Sbjct: 400 LEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCF 459
Query: 126 AKSEA 130
A+ ++
Sbjct: 460 AERKS 464
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 67 VDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126
+ E ++R+ FSPFG+I +I VFP + Y+FV+F S SA A ++ G V +
Sbjct: 225 LTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Query: 127 K 127
K
Sbjct: 285 K 285
>sp|Q01560|NOP3_YEAST Nucleolar protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NPL3 PE=1 SV=1
Length = 414
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 62 PALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRV 121
P L V E L + F PFG ++++ + G +AFV+F SA +A E + GK F N +
Sbjct: 131 PFPLDVQESELNEIFGPFGPMKEVKILNG--FAFVEFEEAESAAKAIEEVHGKSFANQPL 188
Query: 122 HICFAK 127
+ ++K
Sbjct: 189 EVVYSK 194
>sp|Q6PHZ5|RB15B_MOUSE Putative RNA-binding protein 15B OS=Mus musculus GN=Rbm15b PE=1
SV=2
Length = 887
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 67 VDEVILRKAFSPFGEIEKITV-FPGR----SYAFVQFRSIISACRAKETLQGKLFGNPRV 121
V EV LR+AF +G IE++ + P R +YAF++F+++ A RAK + G++ G +
Sbjct: 344 VSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPI 403
Query: 122 HICFAKS 128
I + K+
Sbjct: 404 KIGYGKA 410
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 45 KMTDKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISA 104
K+ A P+ LW+G L + F FG I I G S+A++Q+ S+ +A
Sbjct: 404 KIGYGKANPTTRLWVGGLGP-NTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAA 462
Query: 105 CRAKETLQGKLFGNP--RVHICFAKSE 129
A ++G G P R+ + FAK+E
Sbjct: 463 QAACAKMRGFPLGGPDRRLRVDFAKAE 489
>sp|Q8NDT2|RB15B_HUMAN Putative RNA-binding protein 15B OS=Homo sapiens GN=RBM15B PE=1
SV=3
Length = 890
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 67 VDEVILRKAFSPFGEIEKITV-FPGR----SYAFVQFRSIISACRAKETLQGKLFGNPRV 121
V EV LR+AF +G IE++ + P R +YAF++F+++ A RAK + G++ G +
Sbjct: 348 VSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPI 407
Query: 122 HICFAKS 128
I + K+
Sbjct: 408 KIGYGKA 414
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 45 KMTDKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISA 104
K+ A P+ LW+G L + F FG I I G S+A++Q+ S+ +A
Sbjct: 408 KIGYGKANPTTRLWVGGLGP-NTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAA 466
Query: 105 CRAKETLQGKLFGNP--RVHICFAKSE 129
A ++G G P R+ + FAK+E
Sbjct: 467 QAACAKMRGFPLGGPDRRLRVDFAKAE 493
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 67 VDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126
V E IL KAFS FG++E++ + YAF+ F A +A E + GK + I FA
Sbjct: 349 VTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 406
Query: 127 K 127
K
Sbjct: 407 K 407
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 67 VDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126
+ E ++R+ FSPFG+I +I VFP + Y+FV+F S SA A ++ G V +
Sbjct: 225 LTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Query: 127 K 127
K
Sbjct: 285 K 285
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 67 VDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126
V E LR+ FSP+GE+ + + G+ FVQF + SA +A +L G G + + +
Sbjct: 293 VAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWG 352
Query: 127 KS 128
+S
Sbjct: 353 RS 354
>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1
Length = 3664
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 72 LRKAFSPFGEI-----EKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126
LR F FGEI +K+ P YAF+Q+ I S C+A + + G+ GN R+ + F
Sbjct: 454 LRNIFQRFGEIVDIDIKKVNGVP--QYAFLQYCDIASVCKAIKKMDGEYLGNNRLKLGFG 511
Query: 127 KS 128
KS
Sbjct: 512 KS 513
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 67 VDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126
V E IL K+FS FG++E++ + YAF+ F A +A E + GK + I FA
Sbjct: 349 VTEEILEKSFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 406
Query: 127 K 127
K
Sbjct: 407 K 407
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 67 VDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126
V E IL K+FS FG++E++ + YAF+ F A +A E + GK + I FA
Sbjct: 259 VTEEILEKSFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 316
Query: 127 K 127
K
Sbjct: 317 K 317
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 72 LRKAFSPFGEI-----EKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126
LR F FGEI +K+ P YAF+Q+ I S C+A + + G+ GN R+ + F
Sbjct: 455 LRNIFQRFGEIVDIDIKKVNGVP--QYAFLQYCDIASVCKAIKKMDGEYLGNNRLKLGFG 512
Query: 127 KS 128
KS
Sbjct: 513 KS 514
>sp|Q9P789|YN8E_SCHPO Pumilio domain-containing protein P35G2.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP35G2.14 PE=1 SV=2
Length = 1065
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 52 EPSEVLWIG-FPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKET 110
EP+ LW+G P+ V + FS +G + I + + AF+ F S+ +A E
Sbjct: 589 EPTHALWVGNLPS--GVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEE 646
Query: 111 LQGK--LFGNPRVHICFAK 127
L GK FG+ V I FAK
Sbjct: 647 LNGKRIFFGSDPVCISFAK 665
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 67 VDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126
V E L+KAFS GE+ + + + Y +VQF++ SA A + +QG++ G V I ++
Sbjct: 248 VTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWS 307
Query: 127 KS 128
K+
Sbjct: 308 KN 309
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 71 ILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127
++R+ FSPFG+I +I VFP + Y+FV+F + SA A ++ G V + K
Sbjct: 220 LMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 276
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 71 ILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127
++R+ FSPFG+I +I VFP + Y+FV+F + SA A ++ G V + K
Sbjct: 237 LMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 72 LRKAFSPFGEIEKITVFPG--RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128
LR F FGEI +I + +YAF Q+ I+S +A + G+ G+ R+ + F KS
Sbjct: 672 LRSHFEAFGEIIEIDIKKQGLNAYAFCQYSDIVSVVKAMRKMDGEHLGSNRIKLGFGKS 730
>sp|Q8BHN5|RBM45_MOUSE RNA-binding protein 45 OS=Mus musculus GN=Rbm45 PE=2 SV=1
Length = 476
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 69 EVILRKAFSPFGEIEKITVF------PGRSYAFVQFRSIISACRAKETLQGKLFG 117
E++LR+ FSPFG+I+ I V + AFV+F ACRA E + G+ G
Sbjct: 38 ELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCLG 92
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 67 VDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126
V E L+ F FGEI + + PG+ FVQF + SA A LQG GN R+ + +
Sbjct: 314 VSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWG 373
Query: 127 KSE 129
+++
Sbjct: 374 RNQ 376
>sp|Q6BLU8|CWC2_DEBHA Pre-mRNA-splicing factor CWC2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CWC2 PE=3 SV=2
Length = 339
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKET 110
++ + L+IG + E L K F FG I+KI V ++ AFV FR+ A AKE
Sbjct: 153 SKSNRTLYIGGLHMDDKMENTLTKHFQEFGSIDKIRVLHSKACAFVTFRTENEAQFAKEA 212
Query: 111 LQGK-LFGNPRVHICFAKSE 129
+Q + L GN ++I +A +
Sbjct: 213 MQNQSLDGNEVLNIRWANED 232
>sp|Q4PA86|CWC2_USTMA Pre-mRNA-splicing factor CWC2 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=CWC2 PE=3 SV=1
Length = 480
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 62 PALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETL 111
P E ++R+ FS +GEI+++ V GRS AFV F+ +A AKE +
Sbjct: 250 PETDNATERVVRRHFSEWGEIDRLRVLTGRSCAFVTFKYEANAQFAKEAM 299
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 72 LRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128
LR+ FS FGE+ + + G+ FVQF SA A E+L G + G V + + +S
Sbjct: 337 LRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRS 393
Score = 36.6 bits (83), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 52/170 (30%)
Query: 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGR------SYAFVQFRSIISACRAK 108
+ LW+G L +DE L FS GE+ + V + Y FV+F +S A+
Sbjct: 108 KTLWVG-DLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEF---LSRAAAE 163
Query: 109 ETLQGKLFGNPRVHICFAKSEAGANSGRGSLNAPSSPHFKLNGRSGSSENFRPARN---F 165
E LQ GS+ S F++N S S+ R N
Sbjct: 164 EVLQNY---------------------SGSVMPNSDQPFRINWASFSTGEKRAVENGPDL 202
Query: 166 GSFAGD------------------PSVRSPQLISNLDSGDADVYNFNRKG 197
F GD PSV+S +++ + ++G + Y F R G
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFG 252
>sp|Q9U1N0|HRP65_CHITE Hrp65 protein OS=Chironomus tentans GN=HRP65 PE=1 SV=1
Length = 535
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 57 LWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLF 116
L+IG V E L++ FSP+GEI + + +++AF++ +A RAK+ L G++
Sbjct: 115 LYIG-NLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAERAKKDLDGRMR 173
Query: 117 GNPRVHICFA 126
N + I FA
Sbjct: 174 KNKPIRIRFA 183
>sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SNP1 PE=1
SV=1
Length = 300
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 31 DSRLRHFSPDSEKSKMTDKNAEPSEVLWIG-FPALLKVDEVILRKAFSPFGEIEKITVF- 88
D RL++++P+ + K+ +P ++IG P L DE+ L+K F FGEIEKI +
Sbjct: 86 DRRLQNWNPNVDPHI---KDTDPYRTIFIGRLPYDL--DEIELQKYFVKFGEIEKIRIVK 140
Query: 89 -----PGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEAG 131
+ YAF+ F+ IS+ A + + + IC E G
Sbjct: 141 DKITQKSKGYAFIVFKDPISSKMAFKEIGVHRGIQIKDRICIVDIERG 188
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 72 LRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130
LR++F+ FGE+ + + G+ FVQF SA A + L G + G V + + +S A
Sbjct: 311 LRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPA 369
>sp|Q8IUH3|RBM45_HUMAN RNA-binding protein 45 OS=Homo sapiens GN=RBM45 PE=2 SV=1
Length = 476
Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 69 EVILRKAFSPFGEIEKITVF------PGRSYAFVQFRSIISACRAKETLQGKLFG 117
E +LR+ FSPFG+I+ I V + AFV+F ACRA E + G+ G
Sbjct: 38 ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLG 92
>sp|Q8CFD1|RBM45_RAT RNA-binding protein 45 OS=Rattus norvegicus GN=Rbm45 PE=2 SV=1
Length = 476
Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 69 EVILRKAFSPFGEIEKITVF------PGRSYAFVQFRSIISACRAKETLQGKLFG 117
E +LR+ FSPFG+I+ I V + AFV+F ACRA E + G+ G
Sbjct: 38 ESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLG 92
Score = 37.0 bits (84), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 55 EVLWIGF-PALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQG 113
E L+I F P L +D +L F FG + ++ + G++ +V++ +SA A TL G
Sbjct: 392 ERLFIVFNPHPLPLD--VLEDIFCRFGNLIEVYLVSGKNVGYVKYADRMSANDAITTLHG 449
Query: 114 KLFGNPRVHICFAKS 128
K+ R+ + A S
Sbjct: 450 KILNGVRLKVMLADS 464
>sp|Q0V898|NELFE_BOVIN Negative elongation factor E OS=Bos taurus GN=RDBP PE=2 SV=1
Length = 374
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 70 VILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129
+LR AFSPFG I +++ P R+ AFV + + SA +A L G + ++ + A+ +
Sbjct: 268 TLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVSIARKQ 327
Query: 130 -----AGANSGRGSLNAPSSPH 146
A S GSL +SP
Sbjct: 328 PMLDAATGKSVWGSLAVQNSPK 349
>sp|P18615|NELFE_HUMAN Negative elongation factor E OS=Homo sapiens GN=RDBP PE=1 SV=3
Length = 380
Score = 41.2 bits (95), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 70 VILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129
+LR AFSPFG I +++ P R+ AFV + + SA +A L G + ++ + A+ +
Sbjct: 274 TLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 333
Query: 130 -----AGANSGRGSLNAPSSP 145
A S GSL +SP
Sbjct: 334 PMLDAATGKSVWGSLAVQNSP 354
>sp|P19426|NELFE_MOUSE Negative elongation factor E OS=Mus musculus GN=Rdbp PE=1 SV=2
Length = 375
Score = 41.2 bits (95), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 70 VILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129
+LR AFSPFG I +++ P R+ AFV + + SA +A L G + ++ + A+ +
Sbjct: 278 TLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 337
Query: 130 -----AGANSGRGSLNAPSSPH 146
A S GSL +SP
Sbjct: 338 PMLDAATGKSVWGSLAVQNSPK 359
>sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=mrd1 PE=3 SV=1
Length = 825
Score = 40.8 bits (94), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 56 VLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKL 115
+L F +KVD+ LRK F P+G+I ++ + P + A V+F A +A + L +
Sbjct: 486 ILVKNFSYGVKVDD--LRKLFEPYGQITRLLMPPSGTIAIVEFARPDEAQKAFKGLAYRK 543
Query: 116 FGNPRVHICFAKSEAGANSGRGSLNAPSSPHFKLNGRSGSSENFRPARNFGSFAGD-PSV 174
G+ I F + +A AN +A ++P + S+ F A F + GD P V
Sbjct: 544 VGDS---ILFLE-KAPAN----LFDATTAPQTSVLETKAVSQGFSTADTFAAEDGDEPVV 595
Query: 175 RSPQLISNLD 184
S + NL+
Sbjct: 596 TSTLFVKNLN 605
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 40.0 bits (92), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 67 VDEVILRKAFSPFGEIEKITVFP-----GRSYAFVQFRSIISACRAKETLQGKLFGNPRV 121
V E +LR+ F+ FG+I + + R YAFV F + A RA ET+ G FG+ +
Sbjct: 212 VSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCL 271
Query: 122 HICFAKSEA 130
++ A+ +A
Sbjct: 272 YVGRAQKKA 280
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 40.0 bits (92), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 38 SPDSEKSKMTDKNAEPSEVLWIGFPAL-LKVDEVILRKAFSPFGEIEKITVF------PG 90
SP S + + A P +G L L E LR+ FS +G I +++
Sbjct: 99 SPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158
Query: 91 RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126
R +AFV F ++ A AKE G R+ + F+
Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 40.0 bits (92), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 38 SPDSEKSKMTDKNAEPSEVLWIGFPAL-LKVDEVILRKAFSPFGEIEKITVF------PG 90
SP S + + A P +G L L E LR+ FS +G I +++
Sbjct: 99 SPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158
Query: 91 RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126
R +AFV F ++ A AKE G R+ + F+
Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 40.0 bits (92), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 38 SPDSEKSKMTDKNAEPSEVLWIGFPAL-LKVDEVILRKAFSPFGEIEKITVF------PG 90
SP S + + A P +G L L E LR+ FS +G I +++
Sbjct: 99 SPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158
Query: 91 RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126
R +AFV F ++ A AKE G R+ + F+
Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 40.0 bits (92), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 38 SPDSEKSKMTDKNAEPSEVLWIGFPAL-LKVDEVILRKAFSPFGEIEKITVF------PG 90
SP S + + A P +G L L E LR+ FS +G I +++
Sbjct: 99 SPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158
Query: 91 RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126
R +AFV F ++ A AKE G R+ + F+
Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 39.7 bits (91), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 67 VDEVILRKAFSPFGEI--EKITVFPGRS--YAFVQFRSIISACRAKETLQGKLFGNPRVH 122
+D+ LRK FSPFG I K+ + GRS + FV F S A +A + G++ G+ ++
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 123 ICFAK 127
+ A+
Sbjct: 365 VALAQ 369
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 72 LRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130
L++ FS FGEI + + G+ FVQF + +A A E L G + G V + + ++ A
Sbjct: 322 LKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPA 380
>sp|P21169|DCOR_ECOLI Ornithine decarboxylase, constitutive OS=Escherichia coli (strain
K12) GN=speC PE=1 SV=2
Length = 711
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 35/191 (18%)
Query: 416 GLDMLAKHYYQASGSWVVFFVPGSDGDIGFYNEF-------MHYLEEKQRAAVAKLDDKT 468
G + A Y ++ PG D + G Y++F HYL E K D +
Sbjct: 472 GFEGYAADQYFVDPCKLLLTTPGIDAETGEYSDFGVPATILAHYLRENGIVP-EKCDLNS 530
Query: 469 TLFLVPPSEFSEKVLKVPGKLS-------ISGVVLRLEPPGYNQGPIHHPN--------E 513
LFL+ P+E EK+ ++ L+ ++ + P YN+ P+ + + E
Sbjct: 531 ILFLLTPAESHEKLAQLVAMLAQFEQHIEDDSPLVEVLPSVYNKYPVRYRDYTLRQLCQE 590
Query: 514 LKDANYLSFNADASYLNQSM-RSEPFPSRVSFPDMTMSAQSASYPGSVHSMGNISDSYGE 572
+ D Y+SF D L ++M R + FPS V P A SA G V + I D+ G
Sbjct: 591 MHDL-YVSF--DVKDLQKAMFRQQSFPSVVMNPQ---DAHSAYIRGDV-ELVRIRDAEGR 643
Query: 573 NRHE----YPP 579
E YPP
Sbjct: 644 IAAEGALPYPP 654
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 66 KVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125
K E LR F PFG I + + G++ FV+F I A + + LQG + G + + +
Sbjct: 370 KTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSW 429
Query: 126 AK---SEAGANS 134
+ S A NS
Sbjct: 430 GRPSSSNAKTNS 441
>sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2
PE=3 SV=1
Length = 326
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 50/128 (39%), Gaps = 31/128 (24%)
Query: 23 RGSPFSQRDSRLRHFSPDSEKSKMTDKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEI 82
RG S+ D R + E A PS VL + F + +E L+ FS FG+I
Sbjct: 81 RGGSPSRDDKRRYGNGGNGETRNRLANTASPSNVLGV-FGLAPQTEERDLKDEFSRFGKI 139
Query: 83 EKITVF----PGRS--YAFVQFRSIISACRAKETLQ------------------------ 112
+ + + GRS + FV F + A RAKE Q
Sbjct: 140 DHVDLIMDRKTGRSKCFGFVYFENKEDAVRAKEECQDLQLHGKSIRTDFSATKKPHEPTP 199
Query: 113 GKLFGNPR 120
GK FGNPR
Sbjct: 200 GKYFGNPR 207
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 14/128 (10%)
Query: 20 TGLRGSPFSQRDSRL------------RHFSPDSEKSKMTDKNAEPSEVLWIGFPALLKV 67
T + G P S R R+ R S TD + + V G A +
Sbjct: 215 TEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTD 274
Query: 68 DEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127
D L+ FS +GEI + + G+ FVQF A A L G G V + + +
Sbjct: 275 DH--LKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGR 332
Query: 128 SEAGANSG 135
S + SG
Sbjct: 333 SPSNKQSG 340
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 67 VDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGK 114
V E IL K+FS FG++E++ + YAFV F +A +A + + GK
Sbjct: 352 VTEEILEKSFSEFGKLERVKKL--KDYAFVHFEDRGAAVKAMDEMNGK 397
>sp|Q6P616|RBM22_XENTR Pre-mRNA-splicing factor RBM22 OS=Xenopus tropicalis GN=rbm22 PE=2
SV=1
Length = 417
Score = 38.1 bits (87), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 67 VDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGN-PRVHICF 125
+ E LR F FGEI ITV + AF+QF + +A A E KL N R+++ +
Sbjct: 243 ISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMAAEKSFNKLIVNGRRLNVKW 302
Query: 126 AKSEAGANSGRGSLNAPSSPHFKL 149
+S+A R + S P KL
Sbjct: 303 GRSQAARGKER-ERDGSSDPGMKL 325
>sp|P49960|PRP24_YEAST U4/U6 snRNA-associated-splicing factor PRP24 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PRP24 PE=1
SV=1
Length = 444
Score = 38.1 bits (87), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 42 EKSKMTDK-NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGR-------SY 93
EKSK TD E E++ L +DE +LR++F FG IEKI + G+
Sbjct: 197 EKSKRTDSATLEGREIMIRNLSTEL-LDENLLRESFEGFGSIEKINIPAGQKEHSFNNCC 255
Query: 94 AFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126
AF+ F + SA RA + + L GN + + A
Sbjct: 256 AFMVFENKDSAERALQ-MNRSLLGNREISVSLA 287
>sp|Q9UT83|MUG28_SCHPO Meiotically up-regulated gene 28 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug28 PE=1 SV=1
Length = 609
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 72 LRKAFSPFGEIEKITV--FPG----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125
L + FS FG I+ T+ +P + Y FV F A +A TL G LFG R+ + +
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNY 496
Query: 126 AK 127
A+
Sbjct: 497 AE 498
>sp|Q7ZXB5|RBM22_XENLA Pre-mRNA-splicing factor RBM22 OS=Xenopus laevis GN=rbm22 PE=2 SV=1
Length = 417
Score = 37.7 bits (86), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 67 VDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGN-PRVHICF 125
+ E LR F FGEI ITV + AF+QF + SA A E KL N R+++ +
Sbjct: 243 ISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQSAETAAEKSFNKLIVNGRRLNVKW 302
Query: 126 AKSEAGANSGR 136
+S+A R
Sbjct: 303 GRSQAARGKER 313
>sp|Q0P4R6|RBM46_XENTR Probable RNA-binding protein 46 OS=Xenopus tropicalis GN=rbm46 PE=2
SV=1
Length = 534
Score = 37.7 bits (86), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 12/142 (8%)
Query: 38 SPDSEKSKMTDKNAEPSEVLWIGFPALLKVDEVILRKAFSPF--GEIEKITVFPGRSYAF 95
SP+ E + ++ + +VL++ ++ E ++ F+ + G +E++ R YAF
Sbjct: 222 SPEKE---VDEETMQKVKVLYVR-NLMMSTTEETIKAEFNRYKPGVVERVKKI--RDYAF 275
Query: 96 VQFRSIISACRAKETLQGKLFGNPRVHICFA----KSEAGANSGRGSLNAPSSPHFKLNG 151
V F A A + G+L R+ + A K A +G G +NA S
Sbjct: 276 VHFFRRDYAIAAMSVMNGRLIDGARIEVTLAKPVNKEAAWRQNGNGHMNANSECLLNFAN 335
Query: 152 RSGSSENFRPARNFGSFAGDPS 173
+ GS + N ++ +P+
Sbjct: 336 KEGSQKALDMCSNVPAYLNNPN 357
>sp|F1LMN3|E2F8_RAT Transcription factor E2F8 OS=Rattus norvegicus GN=E2f8 PE=2 SV=2
Length = 860
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 14/105 (13%)
Query: 655 ETKPSGSLPTPI----ASLQPEQLAQ--LASTLLGQQGQAGFTPN------VSTAENQRQ 702
E P+ S +P+ ASL+ EQ A+ A L +G+ FT + V + EN R+
Sbjct: 349 EISPNNSGSSPVMPLTASLEAEQSAKENCAKNLFSTRGKPSFTRHPSLIKLVKSIENDRR 408
Query: 703 TATGHQSDSPLRSSQVYALQNNPVMP-ETSQFGQVQQLQRQQQTS 746
+ S SP++SS+ + QN+P +P + +Q + ++Q ++Q+S
Sbjct: 409 KISSAPS-SPVKSSKAESSQNSPPVPNKMAQLAAICKMQLEEQSS 452
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 329,239,631
Number of Sequences: 539616
Number of extensions: 15163579
Number of successful extensions: 29720
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 318
Number of HSP's that attempted gapping in prelim test: 28245
Number of HSP's gapped (non-prelim): 1323
length of query: 806
length of database: 191,569,459
effective HSP length: 126
effective length of query: 680
effective length of database: 123,577,843
effective search space: 84032933240
effective search space used: 84032933240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)