Query 037075
Match_columns 806
No_of_seqs 322 out of 1944
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 08:24:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 1.1E-14 2.4E-19 141.1 14.3 80 51-131 31-116 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 6.2E-13 1.3E-17 142.3 11.1 77 53-130 268-350 (352)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 1.3E-12 2.7E-17 139.9 10.2 77 53-130 2-84 (352)
4 KOG0148 Apoptosis-promoting RN 99.4 1.5E-12 3.3E-17 136.4 10.0 80 52-132 162-241 (321)
5 PF00076 RRM_1: RNA recognitio 99.4 1.5E-12 3.2E-17 107.0 7.5 65 57-122 1-70 (70)
6 KOG0121 Nuclear cap-binding pr 99.4 1.2E-12 2.5E-17 124.9 7.5 93 53-146 35-134 (153)
7 KOG0107 Alternative splicing f 99.4 6.2E-12 1.3E-16 125.2 12.2 78 54-132 10-88 (195)
8 TIGR01659 sex-lethal sex-letha 99.3 5.4E-12 1.2E-16 138.2 10.5 79 50-129 103-187 (346)
9 PF07744 SPOC: SPOC domain; I 99.3 2.4E-12 5.3E-17 118.8 4.7 97 378-474 1-119 (119)
10 TIGR01648 hnRNP-R-Q heterogene 99.3 5.7E-11 1.2E-15 137.5 16.7 77 52-131 231-309 (578)
11 TIGR01659 sex-lethal sex-letha 99.3 3.4E-11 7.3E-16 132.0 14.1 79 53-132 192-278 (346)
12 TIGR01622 SF-CC1 splicing fact 99.3 3E-11 6.6E-16 134.3 13.2 77 53-131 88-170 (457)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 2.1E-11 4.6E-16 138.1 10.7 77 53-130 1-79 (481)
14 KOG0125 Ataxin 2-binding prote 99.2 2E-11 4.4E-16 130.7 8.5 75 55-130 97-175 (376)
15 PLN03120 nucleic acid binding 99.2 4.2E-11 9.1E-16 126.3 10.3 74 54-129 4-80 (260)
16 KOG0132 RNA polymerase II C-te 99.2 4.9E-11 1.1E-15 138.1 11.6 77 54-131 421-497 (894)
17 PF13893 RRM_5: RNA recognitio 99.2 6.2E-11 1.4E-15 96.1 8.8 55 72-126 1-56 (56)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 5.2E-11 1.1E-15 135.0 11.2 78 52-130 273-352 (481)
19 smart00362 RRM_2 RNA recogniti 99.2 1.2E-10 2.6E-15 93.4 8.8 68 56-124 1-72 (72)
20 KOG0105 Alternative splicing f 99.2 7.9E-11 1.7E-15 118.3 9.1 77 53-130 5-84 (241)
21 PF14259 RRM_6: RNA recognitio 99.2 1.1E-10 2.4E-15 97.5 8.2 65 57-122 1-70 (70)
22 KOG0111 Cyclophilin-type pepti 99.1 2.6E-11 5.7E-16 124.2 4.8 79 53-132 9-93 (298)
23 TIGR01628 PABP-1234 polyadenyl 99.1 1E-10 2.2E-15 134.1 9.9 74 56-130 2-81 (562)
24 TIGR01645 half-pint poly-U bin 99.1 1.6E-10 3.4E-15 134.4 10.8 78 52-130 202-285 (612)
25 KOG0117 Heterogeneous nuclear 99.1 3.1E-10 6.7E-15 125.5 12.4 78 52-132 257-334 (506)
26 TIGR01622 SF-CC1 splicing fact 99.1 1.7E-10 3.7E-15 128.3 10.0 74 54-128 186-265 (457)
27 TIGR01628 PABP-1234 polyadenyl 99.1 1.8E-10 3.9E-15 132.2 10.4 78 52-130 283-365 (562)
28 PLN03213 repressor of silencin 99.1 2.2E-10 4.9E-15 127.4 9.9 75 53-128 9-87 (759)
29 TIGR01642 U2AF_lg U2 snRNP aux 99.1 3.8E-10 8.1E-15 127.1 11.4 77 52-129 293-375 (509)
30 KOG0122 Translation initiation 99.1 2E-10 4.4E-15 119.3 8.3 76 53-129 188-269 (270)
31 KOG0114 Predicted RNA-binding 99.1 4.4E-10 9.6E-15 104.3 9.4 79 51-130 15-96 (124)
32 TIGR01645 half-pint poly-U bin 99.1 2.9E-10 6.3E-15 132.2 9.4 76 52-128 105-186 (612)
33 KOG0113 U1 small nuclear ribon 99.1 8.2E-10 1.8E-14 117.4 11.7 80 52-132 99-184 (335)
34 cd00590 RRM RRM (RNA recogniti 99.1 8.6E-10 1.9E-14 89.0 9.2 69 56-125 1-74 (74)
35 COG0724 RNA-binding proteins ( 99.1 6.1E-10 1.3E-14 109.1 9.7 74 54-128 115-194 (306)
36 KOG4207 Predicted splicing fac 99.0 2.1E-10 4.5E-15 117.0 6.1 79 51-130 10-94 (256)
37 smart00360 RRM RNA recognition 99.0 1.3E-09 2.9E-14 86.9 7.7 65 59-124 1-71 (71)
38 KOG0148 Apoptosis-promoting RN 99.0 5.8E-10 1.3E-14 117.3 6.9 76 54-130 62-143 (321)
39 PLN03121 nucleic acid binding 99.0 1.5E-09 3.2E-14 113.5 9.6 73 54-128 5-80 (243)
40 KOG0144 RNA-binding protein CU 99.0 3.6E-10 7.8E-15 124.5 5.2 78 54-132 124-209 (510)
41 TIGR01648 hnRNP-R-Q heterogene 99.0 1.5E-09 3.2E-14 126.0 9.5 74 53-127 57-136 (578)
42 KOG0153 Predicted RNA-binding 98.9 2.1E-09 4.6E-14 116.2 9.1 77 51-128 225-302 (377)
43 KOG0145 RNA-binding protein EL 98.9 2.3E-09 5E-14 112.4 8.3 79 53-132 40-124 (360)
44 KOG0149 Predicted RNA-binding 98.9 1.3E-09 2.9E-14 112.9 6.2 72 55-128 13-90 (247)
45 KOG0109 RNA-binding protein LA 98.9 9.5E-10 2.1E-14 116.7 5.2 72 56-130 4-75 (346)
46 KOG0145 RNA-binding protein EL 98.9 4.8E-09 1E-13 110.0 9.5 75 54-129 278-358 (360)
47 KOG4206 Spliceosomal protein s 98.9 3.5E-09 7.7E-14 109.1 8.0 82 50-132 5-93 (221)
48 KOG0130 RNA-binding protein RB 98.9 3.3E-09 7.2E-14 102.4 7.1 76 54-130 72-153 (170)
49 KOG0109 RNA-binding protein LA 98.9 2.6E-09 5.7E-14 113.4 6.2 84 51-137 75-158 (346)
50 TIGR01642 U2AF_lg U2 snRNP aux 98.8 8.7E-09 1.9E-13 116.2 9.0 73 54-128 175-259 (509)
51 KOG0108 mRNA cleavage and poly 98.8 6.8E-09 1.5E-13 116.9 7.7 77 55-132 19-101 (435)
52 KOG0126 Predicted RNA-binding 98.8 8.7E-10 1.9E-14 110.7 0.4 80 52-132 33-118 (219)
53 KOG0131 Splicing factor 3b, su 98.8 5E-09 1.1E-13 105.3 5.5 73 54-127 9-87 (203)
54 KOG0117 Heterogeneous nuclear 98.8 1.5E-08 3.3E-13 112.4 9.4 77 53-130 82-165 (506)
55 KOG0415 Predicted peptidyl pro 98.8 6.4E-09 1.4E-13 112.6 6.1 81 50-131 235-321 (479)
56 KOG0144 RNA-binding protein CU 98.8 1.1E-08 2.3E-13 113.2 7.5 78 53-131 33-119 (510)
57 KOG0127 Nucleolar protein fibr 98.7 1.8E-08 4E-13 113.8 8.1 76 53-129 116-196 (678)
58 smart00361 RRM_1 RNA recogniti 98.7 4.6E-08 1E-12 83.4 7.1 56 69-124 2-70 (70)
59 KOG0147 Transcriptional coacti 98.7 1.9E-08 4.2E-13 113.8 6.2 74 56-130 280-359 (549)
60 KOG0146 RNA-binding protein ET 98.6 6.1E-08 1.3E-12 102.2 5.5 81 49-130 280-366 (371)
61 KOG0146 RNA-binding protein ET 98.6 8.1E-08 1.7E-12 101.3 6.0 78 54-132 19-104 (371)
62 KOG0124 Polypyrimidine tract-b 98.5 6E-08 1.3E-12 105.5 4.7 69 55-124 114-188 (544)
63 KOG4661 Hsp27-ERE-TATA-binding 98.5 1.9E-07 4E-12 105.9 7.5 81 51-132 402-488 (940)
64 KOG0131 Splicing factor 3b, su 98.5 3.2E-07 7E-12 92.6 7.0 81 51-132 93-180 (203)
65 KOG0123 Polyadenylate-binding 98.4 4E-07 8.7E-12 101.1 7.7 73 57-131 79-155 (369)
66 KOG0110 RNA-binding protein (R 98.4 1.7E-07 3.6E-12 108.8 4.8 78 53-131 612-695 (725)
67 KOG0123 Polyadenylate-binding 98.4 5.4E-07 1.2E-11 100.1 8.2 73 55-131 2-77 (369)
68 KOG0127 Nucleolar protein fibr 98.4 5.2E-07 1.1E-11 102.4 6.8 77 55-132 6-88 (678)
69 KOG0151 Predicted splicing reg 98.4 6.6E-07 1.4E-11 103.8 7.6 79 51-130 171-258 (877)
70 KOG0110 RNA-binding protein (R 98.3 1.1E-06 2.3E-11 102.4 8.3 71 57-128 518-597 (725)
71 KOG1457 RNA binding protein (c 98.3 3.2E-06 6.9E-11 87.8 10.6 81 53-134 33-123 (284)
72 KOG0116 RasGAP SH3 binding pro 98.3 2.3E-06 5.1E-11 96.3 10.4 77 54-132 288-370 (419)
73 KOG4660 Protein Mei2, essentia 98.3 3.7E-07 7.9E-12 103.9 3.6 70 52-122 73-143 (549)
74 KOG4208 Nucleolar RNA-binding 98.2 2.6E-06 5.7E-11 87.4 8.0 78 51-129 46-130 (214)
75 KOG4212 RNA-binding protein hn 98.2 1.3E-05 2.9E-10 89.3 13.3 74 54-128 44-123 (608)
76 KOG0106 Alternative splicing f 98.2 1.2E-06 2.5E-11 91.0 4.8 72 56-130 3-74 (216)
77 KOG1456 Heterogeneous nuclear 98.2 2.8E-05 6E-10 85.6 14.9 86 47-132 113-202 (494)
78 KOG0124 Polypyrimidine tract-b 98.1 3.4E-06 7.4E-11 92.2 6.3 75 54-129 210-290 (544)
79 KOG4212 RNA-binding protein hn 98.0 1.3E-05 2.8E-10 89.5 7.2 78 48-126 530-608 (608)
80 KOG4209 Splicing factor RNPS1, 98.0 2.2E-05 4.7E-10 82.6 8.5 76 52-129 99-180 (231)
81 KOG1190 Polypyrimidine tract-b 97.9 3.2E-05 6.9E-10 85.9 8.4 78 54-131 297-375 (492)
82 KOG0533 RRM motif-containing p 97.8 5.1E-05 1.1E-09 80.3 8.1 77 54-131 83-164 (243)
83 KOG4454 RNA binding protein (R 97.8 1.1E-05 2.3E-10 83.8 2.0 78 50-128 5-86 (267)
84 KOG1457 RNA binding protein (c 97.7 2.6E-05 5.6E-10 81.2 4.0 73 43-116 199-273 (284)
85 KOG4206 Spliceosomal protein s 97.6 0.00018 3.8E-09 75.0 8.3 77 50-127 142-220 (221)
86 KOG4205 RNA-binding protein mu 97.6 0.00033 7E-09 76.7 9.9 77 53-131 96-178 (311)
87 KOG4205 RNA-binding protein mu 97.6 7.3E-05 1.6E-09 81.7 4.8 77 53-131 5-87 (311)
88 PF11608 Limkain-b1: Limkain b 97.5 0.00034 7.4E-09 63.5 7.9 71 55-130 3-78 (90)
89 KOG1548 Transcription elongati 97.5 0.00022 4.7E-09 78.2 7.2 78 53-131 133-223 (382)
90 PF04059 RRM_2: RNA recognitio 97.3 0.00078 1.7E-08 62.4 8.1 74 55-129 2-87 (97)
91 KOG0226 RNA-binding proteins [ 97.2 0.00027 5.8E-09 75.0 4.0 69 55-124 191-265 (290)
92 KOG1456 Heterogeneous nuclear 97.1 0.0057 1.2E-07 68.0 12.4 81 52-132 285-366 (494)
93 KOG1190 Polypyrimidine tract-b 97.1 0.0012 2.7E-08 73.7 7.4 85 44-129 404-491 (492)
94 KOG0106 Alternative splicing f 97.0 0.00038 8.2E-09 72.7 2.8 66 55-123 100-165 (216)
95 COG5175 MOT2 Transcriptional r 97.0 0.0013 2.9E-08 72.0 6.7 74 54-128 114-202 (480)
96 KOG0112 Large RNA-binding prot 97.0 0.0018 4E-08 77.9 8.3 82 50-132 451-534 (975)
97 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.0015 3.2E-08 54.0 5.3 52 55-108 2-53 (53)
98 PF08777 RRM_3: RNA binding mo 97.0 0.0023 5.1E-08 59.8 7.2 69 55-124 2-75 (105)
99 KOG1855 Predicted RNA-binding 96.7 0.0014 3E-08 73.7 3.8 62 52-114 229-309 (484)
100 KOG0120 Splicing factor U2AF, 96.6 0.0045 9.7E-08 71.6 7.4 81 48-128 393-491 (500)
101 KOG2416 Acinus (induces apopto 96.5 0.002 4.3E-08 74.7 4.0 77 52-129 442-522 (718)
102 KOG4210 Nuclear localization s 96.4 0.0028 6.1E-08 68.7 4.3 76 54-131 185-266 (285)
103 KOG0147 Transcriptional coacti 96.4 0.0046 9.9E-08 71.4 6.1 77 52-128 441-527 (549)
104 KOG1995 Conserved Zn-finger pr 96.3 0.0092 2E-07 66.0 7.1 79 53-132 65-157 (351)
105 KOG0120 Splicing factor U2AF, 96.2 0.0028 6E-08 73.2 3.0 77 54-131 289-371 (500)
106 PF05172 Nup35_RRM: Nup53/35/4 96.1 0.019 4.1E-07 53.6 7.4 70 56-128 8-91 (100)
107 KOG2202 U2 snRNP splicing fact 95.9 0.0037 8E-08 66.5 1.9 57 72-128 85-147 (260)
108 KOG2314 Translation initiation 95.8 0.019 4.2E-07 66.6 7.4 71 54-126 58-141 (698)
109 KOG1548 Transcription elongati 95.7 0.025 5.4E-07 62.6 7.4 75 53-127 264-350 (382)
110 KOG1996 mRNA splicing factor [ 95.7 0.02 4.2E-07 62.3 6.1 61 69-129 300-367 (378)
111 KOG4211 Splicing factor hnRNP- 95.5 0.036 7.8E-07 63.6 7.9 73 53-128 9-85 (510)
112 KOG3152 TBP-binding protein, a 95.5 0.0086 1.9E-07 63.9 2.5 67 53-120 73-157 (278)
113 KOG4849 mRNA cleavage factor I 95.4 0.31 6.6E-06 54.4 14.2 72 55-127 81-161 (498)
114 KOG4211 Splicing factor hnRNP- 95.1 0.14 3.1E-06 59.0 11.0 72 53-126 102-179 (510)
115 PF15023 DUF4523: Protein of u 94.8 0.099 2.1E-06 52.1 7.5 74 51-127 83-160 (166)
116 PF08952 DUF1866: Domain of un 94.3 0.14 3E-06 51.0 7.4 78 51-131 24-109 (146)
117 PF04847 Calcipressin: Calcipr 94.3 0.081 1.8E-06 54.3 6.0 61 68-128 8-70 (184)
118 KOG0112 Large RNA-binding prot 93.9 0.017 3.7E-07 69.9 0.1 75 53-128 371-450 (975)
119 KOG2193 IGF-II mRNA-binding pr 93.6 0.067 1.4E-06 60.6 4.0 76 55-131 2-78 (584)
120 KOG4307 RNA binding protein RB 93.4 0.33 7.2E-06 58.0 9.4 71 54-125 867-943 (944)
121 KOG4676 Splicing factor, argin 92.2 0.14 3E-06 57.7 3.9 66 56-123 9-83 (479)
122 KOG4285 Mitotic phosphoprotein 92.1 0.3 6.5E-06 53.6 6.3 58 67-125 208-266 (350)
123 KOG4574 RNA-binding protein (c 92.1 0.085 1.8E-06 63.9 2.3 65 66-130 309-375 (1007)
124 PF08675 RNA_bind: RNA binding 91.6 0.98 2.1E-05 41.5 8.0 54 55-112 10-63 (87)
125 KOG0129 Predicted RNA-binding 91.2 0.33 7.1E-06 56.4 5.8 69 54-126 259-338 (520)
126 KOG0129 Predicted RNA-binding 91.2 0.45 9.9E-06 55.3 6.9 62 48-110 364-432 (520)
127 KOG2068 MOT2 transcription fac 90.4 0.12 2.5E-06 57.3 1.2 73 55-128 78-162 (327)
128 KOG0128 RNA-binding protein SA 90.3 0.23 5.1E-06 60.3 3.7 81 54-135 736-821 (881)
129 KOG2135 Proteins containing th 88.8 0.25 5.3E-06 56.9 2.2 62 68-130 386-447 (526)
130 KOG2318 Uncharacterized conser 88.6 1.4 3E-05 52.2 8.0 75 51-126 171-305 (650)
131 KOG2591 c-Mpl binding protein, 88.0 1 2.2E-05 53.0 6.4 72 48-121 169-244 (684)
132 PF03880 DbpA: DbpA RNA bindin 86.7 2.4 5.3E-05 37.0 6.8 68 56-126 2-74 (74)
133 KOG0105 Alternative splicing f 86.3 11 0.00025 39.4 12.2 61 55-117 116-176 (241)
134 PF07576 BRAP2: BRCA1-associat 86.2 4.6 0.0001 38.6 8.8 65 53-118 12-81 (110)
135 PF10309 DUF2414: Protein of u 85.8 2.8 6E-05 36.4 6.4 54 55-111 6-62 (62)
136 KOG0115 RNA-binding protein p5 84.1 1 2.3E-05 48.6 3.8 58 54-112 31-93 (275)
137 PF03467 Smg4_UPF3: Smg-4/UPF3 82.9 1.4 2.9E-05 45.0 3.9 76 54-130 7-99 (176)
138 PF11767 SET_assoc: Histone ly 80.3 7.6 0.00016 34.1 7.0 56 65-123 10-65 (66)
139 KOG0128 RNA-binding protein SA 79.2 0.18 4E-06 61.2 -4.3 62 55-117 668-735 (881)
140 KOG4307 RNA binding protein RB 77.0 1.3 2.9E-05 53.2 1.9 73 53-126 433-511 (944)
141 COG5638 Uncharacterized conser 75.7 12 0.00025 43.2 8.6 41 48-89 140-185 (622)
142 KOG2253 U1 snRNP complex, subu 75.4 1.6 3.5E-05 52.2 2.0 71 51-125 37-107 (668)
143 KOG1365 RNA-binding protein Fu 74.5 3.4 7.4E-05 47.0 4.1 73 54-127 280-360 (508)
144 KOG0804 Cytoplasmic Zn-finger 71.6 7.9 0.00017 44.9 6.1 67 51-118 71-142 (493)
145 PRK11634 ATP-dependent RNA hel 68.3 32 0.0007 41.7 10.7 73 54-129 486-563 (629)
146 KOG1365 RNA-binding protein Fu 67.3 14 0.00029 42.4 6.7 54 56-110 163-225 (508)
147 KOG4660 Protein Mei2, essentia 65.0 8.1 0.00018 45.7 4.6 41 91-131 431-475 (549)
148 cd00594 KU Ku-core domain; inc 58.9 25 0.00055 37.4 6.8 62 431-500 110-178 (272)
149 TIGR02772 Ku_bact Ku protein, 56.9 33 0.00071 37.3 7.2 80 406-501 87-168 (258)
150 KOG4210 Nuclear localization s 52.0 7.5 0.00016 42.7 1.5 75 54-129 88-168 (285)
151 KOG4019 Calcineurin-mediated s 47.9 14 0.00031 38.5 2.6 75 55-129 11-90 (193)
152 cd00789 KU_like Ku-core domain 45.1 65 0.0014 35.0 7.2 80 406-502 86-168 (256)
153 PF02735 Ku: Ku70/Ku80 beta-ba 42.8 46 0.001 34.0 5.4 63 432-500 105-175 (200)
154 KOG1634 Predicted transcriptio 41.5 32 0.00069 42.7 4.6 92 374-466 546-644 (778)
155 smart00559 Ku78 Ku70 and Ku80 40.8 81 0.0018 30.9 6.6 82 409-500 38-127 (140)
156 cd00788 KU70 Ku-core domain, K 40.7 74 0.0016 34.6 6.9 69 432-500 117-193 (287)
157 KOG0921 Dosage compensation co 39.3 1.2E+02 0.0025 39.0 8.7 13 96-108 1086-1098(1282)
158 KOG3598 Thyroid hormone recept 35.0 1.7E+02 0.0037 39.1 9.4 11 792-802 2190-2200(2220)
159 KOG4676 Splicing factor, argin 30.9 11 0.00024 43.2 -1.3 73 54-128 151-225 (479)
160 KOG2135 Proteins containing th 30.1 46 0.00099 39.2 3.3 66 60-128 202-268 (526)
161 KOG2891 Surface glycoprotein [ 27.5 23 0.0005 39.1 0.4 62 67-128 173-267 (445)
162 PF13546 DDE_5: DDE superfamil 26.2 2E+02 0.0043 30.6 7.1 115 374-496 104-244 (273)
163 cd07445 CRD_corin_1 One of two 25.8 12 0.00026 37.0 -1.9 22 392-413 87-108 (130)
164 cd00873 KU80 Ku-core domain, K 24.1 1.9E+02 0.004 31.8 6.6 82 408-500 98-186 (300)
165 cd07464 CRD_FZ2 Cysteine-rich 23.3 11 0.00024 37.0 -2.7 23 391-413 84-106 (127)
166 KOG2884 26S proteasome regulat 23.1 1.4E+02 0.003 32.4 5.0 63 416-487 124-187 (259)
167 PF03745 DUF309: Domain of unk 22.8 1.1E+02 0.0024 26.3 3.6 25 779-804 30-54 (62)
168 cd07449 CRD_FZ3 Cysteine-rich 22.1 15 0.00032 36.1 -2.0 22 392-413 85-106 (127)
169 TIGR00578 ku70 ATP-dependent D 21.5 2.1E+02 0.0047 34.6 6.9 91 406-500 318-417 (584)
170 cd07450 CRD_FZ6 Cysteine-rich 21.1 16 0.00034 36.0 -2.1 22 392-413 85-106 (127)
171 PF10567 Nab6_mRNP_bdg: RNA-re 20.7 1.4E+02 0.0031 33.4 4.8 75 52-127 13-106 (309)
172 KOG2193 IGF-II mRNA-binding pr 20.2 6.7 0.00015 45.2 -5.4 76 54-130 80-158 (584)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.60 E-value=1.1e-14 Score=141.06 Aligned_cols=80 Identities=26% Similarity=0.390 Sum_probs=73.5
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
...+++|||+||+ .+++|++|+++|++||.|++|+|+.+ |+||||+|.+.++|++|++.|+|..|+|+.|+|+
T Consensus 31 ~~~~~~lfVgnL~-~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGLS-WGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCCC-CCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3457789999999 99999999999999999999998754 7999999999999999999999999999999999
Q ss_pred eecCCCC
Q 037075 125 FAKSEAG 131 (806)
Q Consensus 125 fAKs~~~ 131 (806)
|++....
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9986544
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.42 E-value=6.2e-13 Score=142.31 Aligned_cols=77 Identities=23% Similarity=0.465 Sum_probs=71.8
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
.+.+|||+||+ .+++|++|+++|++||.|++|+|+.+ ||||||+|.+.++|.+|++.|||..|+|+.|+|.|+
T Consensus 268 ~~~~lfV~NL~-~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 268 AGYCIFVYNLS-PDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCcEEEEeCCC-CCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34579999999 99999999999999999999999865 799999999999999999999999999999999999
Q ss_pred cCCC
Q 037075 127 KSEA 130 (806)
Q Consensus 127 Ks~~ 130 (806)
.+..
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 7743
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.38 E-value=1.3e-12 Score=139.93 Aligned_cols=77 Identities=21% Similarity=0.387 Sum_probs=72.0
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
+.++|||+||+ .+++|++|+++|+.||+|.+|+|+.+ +|||||+|.+.++|++|++.|+|..|.|+.|+|+|+
T Consensus 2 ~~~~l~V~nLp-~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 2 SKTNLIVNYLP-QTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCcEEEEeCCC-CCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 46799999999 99999999999999999999999865 589999999999999999999999999999999999
Q ss_pred cCCC
Q 037075 127 KSEA 130 (806)
Q Consensus 127 Ks~~ 130 (806)
++..
T Consensus 81 ~~~~ 84 (352)
T TIGR01661 81 RPSS 84 (352)
T ss_pred cccc
Confidence 8644
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.5e-12 Score=136.43 Aligned_cols=80 Identities=28% Similarity=0.501 Sum_probs=75.5
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCC
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEAG 131 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~~ 131 (806)
+-+++|||||++ ..++|++|++.|++||.|.+|+|++++|||||.|++.|.|.+||..|||.+|.|..++|.|.|....
T Consensus 162 p~NtsVY~G~I~-~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 162 PDNTSVYVGNIA-SGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred CCCceEEeCCcC-ccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 446789999999 6799999999999999999999999999999999999999999999999999999999999998665
Q ss_pred C
Q 037075 132 A 132 (806)
Q Consensus 132 ~ 132 (806)
.
T Consensus 241 ~ 241 (321)
T KOG0148|consen 241 G 241 (321)
T ss_pred C
Confidence 4
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.37 E-value=1.5e-12 Score=107.05 Aligned_cols=65 Identities=40% Similarity=0.595 Sum_probs=61.9
Q ss_pred EEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 57 LWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 57 LfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
|||+||+ .++++++|+++|+.||.|..+.+..+ ++||||+|.+.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp-~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLP-PDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESET-TTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCC-CcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999 99999999999999999999998874 78999999999999999999999999999886
No 6
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.2e-12 Score=124.94 Aligned_cols=93 Identities=19% Similarity=0.265 Sum_probs=79.8
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
.+.|||||||+ +.++|+.|+++|+++|+|.+|.|--+ .|||||+|.+.++|+.|++.++|+.++.+.|+|+|.
T Consensus 35 ~S~tvyVgNlS-fyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLS-FYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeee-eeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 57899999999 99999999999999999999988655 589999999999999999999999999999999998
Q ss_pred cCCCCC-CCCCCCCCCCCCCC
Q 037075 127 KSEAGA-NSGRGSLNAPSSPH 146 (806)
Q Consensus 127 Ks~~~~-~~grg~~g~P~sp~ 146 (806)
-.-... ..|+|.+|+....-
T Consensus 114 ~GF~eGRQyGRG~sGGqVrde 134 (153)
T KOG0121|consen 114 AGFVEGRQYGRGKSGGQVRDE 134 (153)
T ss_pred ccchhhhhhcCCCCCCeechh
Confidence 654333 55666666554443
No 7
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=6.2e-12 Score=125.23 Aligned_cols=78 Identities=22% Similarity=0.358 Sum_probs=72.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCCC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEAGA 132 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~~~ 132 (806)
.+.||||||+ .++++.||+.+|..||.|.+|.|... .|||||+|++..+|+.|+..|+|+.|+|.+|+|++++.....
T Consensus 10 ~~kVYVGnL~-~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r~ 88 (195)
T KOG0107|consen 10 NTKVYVGNLG-SRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPRG 88 (195)
T ss_pred CceEEeccCC-CCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCccc
Confidence 5679999999 89999999999999999999998765 789999999999999999999999999999999999876553
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.32 E-value=5.4e-12 Score=138.24 Aligned_cols=79 Identities=23% Similarity=0.376 Sum_probs=73.0
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
.....++|||++|+ .++||++|+++|+.||+|++|+|+.+ |+||||+|.+.++|++|++.|+|..|.+++|+|
T Consensus 103 ~~~~~~~LfVgnLp-~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLP-QDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34467899999999 99999999999999999999999765 589999999999999999999999999999999
Q ss_pred EeecCC
Q 037075 124 CFAKSE 129 (806)
Q Consensus 124 efAKs~ 129 (806)
.|++..
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 999764
No 9
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=99.28 E-value=2.4e-12 Score=118.77 Aligned_cols=97 Identities=27% Similarity=0.401 Sum_probs=75.4
Q ss_pred ceeeeccCCCceeeeEEeecccc--c-CcCC------CceeccccccchhHHHHHhhccC---CceEEEEec-----CCC
Q 037075 378 WEGTIAKGGTPVCRARCFPVGKV--M-DMML------PEFLDCTARTGLDMLAKHYYQAS---GSWVVFFVP-----GSD 440 (806)
Q Consensus 378 W~GtIAKgGtpvCrarC~pvgk~--~-~~~~------P~~ld~t~Rt~l~~l~~~~~~a~---~~~v~~~~p-----~s~ 440 (806)
|+|+|...+..-|.|+|..|+.. + +..| |.+|++.-|.+++.+.+.+.+-. ..+|++|.. +++
T Consensus 1 W~G~i~m~~~~~f~~~a~~v~G~~~~~~~~l~~~~~~p~~i~i~gRl~~~~~~~yl~~i~~s~~~~v~v~~~~~~~~~~~ 80 (119)
T PF07744_consen 1 WQGTISMKSVASFSARAHFVSGNCDLLDNVLPWQQLPPKKIDIRGRLDPEKVWDYLRQIRKSRSKDVCVVALSSPESDSN 80 (119)
T ss_dssp EEEEEEETT-EEEEEEEEEEEE-HHHHHHHS-------EEE-EEEE-SHHHHHHHHHHTSSTTT-EEEEEEE-SSHHHHH
T ss_pred CceEEEcCCCCeEEEEEEEEEcchhHhhhhcccccCCCcEEEEEeecCHHHHHHHHHhcccCCCceEEEEEEcCCcccCH
Confidence 99999999999999999999653 2 1334 99999999999999988887443 337777666 677
Q ss_pred CchhhHHHHHHHHHhccceeEeecCC-----CceEEEeC
Q 037075 441 GDIGFYNEFMHYLEEKQRAAVAKLDD-----KTTLFLVP 474 (806)
Q Consensus 441 ~D~~~y~~f~~YL~~K~ragv~k~~~-----~~~lflvP 474 (806)
.|...|++|++||.+|+|||||+++. .+.|||||
T Consensus 81 ~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 81 SDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp HHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred HHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 99999999999999999999999997 67899998
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.28 E-value=5.7e-11 Score=137.50 Aligned_cols=77 Identities=29% Similarity=0.512 Sum_probs=71.2
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCC--CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPF--GEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~F--GeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~ 129 (806)
...++|||+||+ .+++|++|+++|++| |+|++|+++ ++||||+|.+.++|++|++.|||.+|+|+.|+|+|+++.
T Consensus 231 ~~~k~LfVgNL~-~~~tee~L~~~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 231 AKVKILYVRNLM-TTTTEEIIEKSFSEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred ccccEEEEeCCC-CCCCHHHHHHHHHhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 346899999999 999999999999999 999999885 679999999999999999999999999999999999875
Q ss_pred CC
Q 037075 130 AG 131 (806)
Q Consensus 130 ~~ 131 (806)
..
T Consensus 308 ~~ 309 (578)
T TIGR01648 308 DK 309 (578)
T ss_pred Cc
Confidence 43
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.28 E-value=3.4e-11 Score=132.00 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=71.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCC--CeEEEE
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGN--PRVHIC 124 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~G--rrIrVe 124 (806)
..++|||+||+ .++||++|+++|++||+|+.|+|+.+ |+||||+|.+.++|++||+.|++..+.+ +.|+|.
T Consensus 192 ~~~~lfV~nLp-~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 192 KDTNLYVTNLP-RTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred ccceeEEeCCC-CcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 35689999999 99999999999999999999999876 4899999999999999999999999876 679999
Q ss_pred eecCCCCC
Q 037075 125 FAKSEAGA 132 (806)
Q Consensus 125 fAKs~~~~ 132 (806)
|++.....
T Consensus 271 ~a~~~~~~ 278 (346)
T TIGR01659 271 LAEEHGKA 278 (346)
T ss_pred ECCccccc
Confidence 99875443
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.27 E-value=3e-11 Score=134.28 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=70.8
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
+.++|||+||+ ..+++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|+. |+|..+.|+.|.|.++
T Consensus 88 ~~~~l~V~nlp-~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 88 DDRTVFVLQLA-LKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred CCcEEEEeCCC-CCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 47899999999 99999999999999999999999865 7899999999999999995 9999999999999998
Q ss_pred cCCCC
Q 037075 127 KSEAG 131 (806)
Q Consensus 127 Ks~~~ 131 (806)
+....
T Consensus 166 ~~~~~ 170 (457)
T TIGR01622 166 QAEKN 170 (457)
T ss_pred chhhh
Confidence 76543
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.24 E-value=2.1e-11 Score=138.09 Aligned_cols=77 Identities=23% Similarity=0.312 Sum_probs=72.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHh--CCCeeCCCeEEEEeecCCC
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETL--QGKLFGNPRVHICFAKSEA 130 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaL--nG~~I~GrrIrVefAKs~~ 130 (806)
||++|||+||+ .+++|++|+++|++||.|.+|+|+++|+||||+|++.++|++|++.| ++..|.|+.|+|.|++...
T Consensus 1 ps~vv~V~nLp-~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~ 79 (481)
T TIGR01649 1 PSPVVHVRNLP-QDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQE 79 (481)
T ss_pred CccEEEEcCCC-CCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcc
Confidence 68999999999 99999999999999999999999999999999999999999999975 7889999999999997643
No 14
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=2e-11 Score=130.70 Aligned_cols=75 Identities=19% Similarity=0.377 Sum_probs=70.5
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~ 130 (806)
++|+|.||+ +...|.||+.+|++||+|.+|.|+-+ ||||||+|++.++|++|.++|||..|.|++|.|.-|..+-
T Consensus 97 kRLhVSNIP-FrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 97 KRLHVSNIP-FRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred ceeEeecCC-ccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhh
Confidence 689999999 99999999999999999999998754 8999999999999999999999999999999999987653
No 15
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.21 E-value=4.2e-11 Score=126.32 Aligned_cols=74 Identities=24% Similarity=0.235 Sum_probs=69.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG---RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d---KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~ 129 (806)
.++|||+||+ +.++|++|+++|+.||+|++|.|..+ ++||||+|.+.++|+.|+. |+|..|.|+.|+|.++...
T Consensus 4 ~rtVfVgNLs-~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVS-LKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 5789999999 99999999999999999999999876 6899999999999999995 9999999999999998754
No 16
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.21 E-value=4.9e-11 Score=138.10 Aligned_cols=77 Identities=29% Similarity=0.445 Sum_probs=73.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEAG 131 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~~ 131 (806)
++|||||.|+ .+++|.+|..+|+.||+|.+|.++..++||||.+..+.+|++|+..|....+.++.|+|.|+.....
T Consensus 421 SrTLwvG~i~-k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIP-KNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeecccc-chhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 6899999999 9999999999999999999999999999999999999999999999999999999999999977543
No 17
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.21 E-value=6.2e-11 Score=96.10 Aligned_cols=55 Identities=40% Similarity=0.729 Sum_probs=52.3
Q ss_pred HHHhhcCCCCeeEEEEeCCC-CEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 72 LRKAFSPFGEIEKITVFPGR-SYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 72 LrelFs~FGeI~~VrI~~dK-GyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
|+++|++||+|.+|.+...+ ++|||+|.+.++|.+|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999999987 99999999999999999999999999999999997
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.20 E-value=5.2e-11 Score=135.01 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=73.1
Q ss_pred CCCcEEEEecCCCC-CCCHHHHHHhhcCCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 037075 52 EPSEVLWIGFPALL-KVDEVILRKAFSPFGEIEKITVFPG-RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129 (806)
Q Consensus 52 ~PS~tLfVGNLp~~-~vTEedLrelFs~FGeI~~VrI~~d-KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~ 129 (806)
.++.+|||+||+ . .+++++|+++|+.||.|.+|+|+.+ ++||||+|.+.++|++|++.|||..|.|+.|+|.+++..
T Consensus 273 ~~~~~l~v~nL~-~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 273 GPGSVLMVSGLH-QEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCEEEEeCCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 578899999999 7 6999999999999999999999876 699999999999999999999999999999999999875
Q ss_pred C
Q 037075 130 A 130 (806)
Q Consensus 130 ~ 130 (806)
.
T Consensus 352 ~ 352 (481)
T TIGR01649 352 N 352 (481)
T ss_pred c
Confidence 4
No 19
>smart00362 RRM_2 RNA recognition motif.
Probab=99.17 E-value=1.2e-10 Score=93.45 Aligned_cols=68 Identities=32% Similarity=0.491 Sum_probs=63.9
Q ss_pred EEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCC----CEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 56 VLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGR----SYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 56 tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dK----GyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
+|||+||+ ..+++++|+++|..||.|..+.+..++ ++|||+|.+.++|++|++.++|..+.|+.|+|.
T Consensus 1 ~v~i~~l~-~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLP-PDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCC-CcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999 899999999999999999999998875 999999999999999999999999999998873
No 20
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=7.9e-11 Score=118.34 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=70.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG---RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d---KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~ 129 (806)
.+.+||||||| .+|.|.+|+++|.+||.|..|.+... -.||||+|++..+|+.||..-+|..++|.+|+|+|++..
T Consensus 5 ~~~~iyvGNLP-~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLP-GDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCC-cchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 46789999999 99999999999999999999988544 469999999999999999999999999999999999875
Q ss_pred C
Q 037075 130 A 130 (806)
Q Consensus 130 ~ 130 (806)
.
T Consensus 84 r 84 (241)
T KOG0105|consen 84 R 84 (241)
T ss_pred C
Confidence 5
No 21
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.16 E-value=1.1e-10 Score=97.47 Aligned_cols=65 Identities=35% Similarity=0.503 Sum_probs=59.8
Q ss_pred EEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 57 LWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 57 LfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
|||+||+ ..+++++|+++|+.||.|..|++..+ +++|||+|.+.++|.+|++.++|..|+|+.|+
T Consensus 1 v~i~nlp-~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLP-PSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESST-TT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCC-CCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999 99999999999999999999999887 58999999999999999999999999999875
No 22
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.6e-11 Score=124.23 Aligned_cols=79 Identities=28% Similarity=0.430 Sum_probs=74.6
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
-.++||||+|. .+++|..|...|-+||.|++|.+..+ ||||||+|...|+|.+||..||+.++.|+.|+|.||
T Consensus 9 ~KrtlYVGGla-deVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLA-DEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccch-HHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35799999999 89999999999999999999998765 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037075 127 KSEAGA 132 (806)
Q Consensus 127 Ks~~~~ 132 (806)
++.+..
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 998876
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.14 E-value=1e-10 Score=134.12 Aligned_cols=74 Identities=28% Similarity=0.463 Sum_probs=69.4
Q ss_pred EEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 037075 56 VLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129 (806)
Q Consensus 56 tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~ 129 (806)
+||||||+ .++||++|+++|++||.|++|+|+++ +|||||+|.+.++|++|++.|++..|.|+.|+|.|++.+
T Consensus 2 sl~VgnLp-~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLD-PDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 79999999 99999999999999999999999875 579999999999999999999999999999999998754
Q ss_pred C
Q 037075 130 A 130 (806)
Q Consensus 130 ~ 130 (806)
.
T Consensus 81 ~ 81 (562)
T TIGR01628 81 P 81 (562)
T ss_pred c
Confidence 3
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.13 E-value=1.6e-10 Score=134.42 Aligned_cols=78 Identities=15% Similarity=0.299 Sum_probs=72.2
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
...++|||+||+ .++++++|+++|+.||+|++|+|.++ ||||||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 202 ~~~~rLfVgnLp-~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~k 280 (612)
T TIGR01645 202 KKFNRIYVASVH-PDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 280 (612)
T ss_pred cccceEEeecCC-CCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEe
Confidence 345789999999 99999999999999999999999864 79999999999999999999999999999999999
Q ss_pred ecCCC
Q 037075 126 AKSEA 130 (806)
Q Consensus 126 AKs~~ 130 (806)
+....
T Consensus 281 Ai~pP 285 (612)
T TIGR01645 281 CVTPP 285 (612)
T ss_pred cCCCc
Confidence 98644
No 25
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=3.1e-10 Score=125.49 Aligned_cols=78 Identities=26% Similarity=0.397 Sum_probs=72.3
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCC
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEAG 131 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~~ 131 (806)
..-++|||.||. .++||+.|+++|..||.|++|+.+++ ||||.|.++++|.+|++.|||++|+|..|.|.+||+...
T Consensus 257 s~VKvLYVRNL~-~~tTeE~lk~~F~~~G~veRVkk~rD--YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 257 SKVKVLYVRNLM-ESTTEETLKKLFNEFGKVERVKKPRD--YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred hheeeeeeeccc-hhhhHHHHHHHHHhccceEEeecccc--eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 345899999999 89999999999999999999998755 999999999999999999999999999999999998655
Q ss_pred C
Q 037075 132 A 132 (806)
Q Consensus 132 ~ 132 (806)
.
T Consensus 334 ~ 334 (506)
T KOG0117|consen 334 K 334 (506)
T ss_pred h
Confidence 4
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.12 E-value=1.7e-10 Score=128.34 Aligned_cols=74 Identities=26% Similarity=0.504 Sum_probs=70.1
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
+++|||+||+ ..++|++|+++|++||.|..|.+..+ +|||||+|.+.++|++|++.|+|..|.|+.|+|.|++
T Consensus 186 ~~~l~v~nl~-~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLH-FNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCC-CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6899999999 99999999999999999999998843 7899999999999999999999999999999999998
Q ss_pred C
Q 037075 128 S 128 (806)
Q Consensus 128 s 128 (806)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 4
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.12 E-value=1.8e-10 Score=132.16 Aligned_cols=78 Identities=26% Similarity=0.396 Sum_probs=72.5
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
....+|||+||+ ..+++++|+++|++||+|++|+++.+ +|||||+|.+.++|++|++.|||..|+|+.|+|.|+
T Consensus 283 ~~~~~l~V~nl~-~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLD-DTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCC-CccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 456789999999 99999999999999999999999765 699999999999999999999999999999999999
Q ss_pred cCCC
Q 037075 127 KSEA 130 (806)
Q Consensus 127 Ks~~ 130 (806)
+...
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 8654
No 28
>PLN03213 repressor of silencing 3; Provisional
Probab=99.10 E-value=2.2e-10 Score=127.45 Aligned_cols=75 Identities=25% Similarity=0.337 Sum_probs=70.0
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC--CCEEEEEeCCH--HHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG--RSYAFVQFRSI--ISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d--KGyAFVeF~s~--EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
...+||||||+ +.+++++|+.+|+.||.|.+|.|++. ||||||+|.+. .++.+||..|||..+.|+.|+|.-|++
T Consensus 9 ~gMRIYVGNLS-ydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVGGLG-ESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEeCCC-CCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 45789999999 99999999999999999999999875 89999999987 789999999999999999999999874
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.09 E-value=3.8e-10 Score=127.12 Aligned_cols=77 Identities=21% Similarity=0.408 Sum_probs=71.5
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
...++|||+||+ ..+++++|+++|+.||.|+.|.|+.+ +|||||+|.+.++|..|++.|+|..|.|+.|+|.+
T Consensus 293 ~~~~~l~v~nlp-~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIGNLP-LYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346799999999 99999999999999999999998764 79999999999999999999999999999999999
Q ss_pred ecCC
Q 037075 126 AKSE 129 (806)
Q Consensus 126 AKs~ 129 (806)
+...
T Consensus 372 a~~~ 375 (509)
T TIGR01642 372 ACVG 375 (509)
T ss_pred CccC
Confidence 9754
No 30
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2e-10 Score=119.32 Aligned_cols=76 Identities=25% Similarity=0.372 Sum_probs=71.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
-+++|-|.||+ .+++|++|+++|.+||.|.+|.|.++ ||||||+|.++++|.+||+.|+|.-++.-.|+|+|+
T Consensus 188 D~~tvRvtNLs-ed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLS-EDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCc-cccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46789999999 99999999999999999999998876 899999999999999999999999999999999999
Q ss_pred cCC
Q 037075 127 KSE 129 (806)
Q Consensus 127 Ks~ 129 (806)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 974
No 31
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=4.4e-10 Score=104.27 Aligned_cols=79 Identities=24% Similarity=0.370 Sum_probs=72.6
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG---RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d---KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
.+-++.|||.||| +++|.+++.++|.+||.|..|+|-.. +|-|||.|+++.+|.+|++.|.|..++++-+.|-|-.
T Consensus 15 pevnriLyirNLp-~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 15 PEVNRILYIRNLP-FKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhhheeEEEecCC-ccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4558899999999 99999999999999999999999654 8999999999999999999999999999999999876
Q ss_pred CCC
Q 037075 128 SEA 130 (806)
Q Consensus 128 s~~ 130 (806)
...
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 543
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.07 E-value=2.9e-10 Score=132.21 Aligned_cols=76 Identities=24% Similarity=0.448 Sum_probs=69.8
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
....+||||||+ ++++|++|+++|++||.|.+|+|..+ ||||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 105 ~~~~rLfVGnLp-~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSIS-FELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCCC-CCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 345789999999 99999999999999999999998754 89999999999999999999999999999999986
Q ss_pred ecC
Q 037075 126 AKS 128 (806)
Q Consensus 126 AKs 128 (806)
...
T Consensus 184 p~~ 186 (612)
T TIGR01645 184 PSN 186 (612)
T ss_pred ccc
Confidence 543
No 33
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=8.2e-10 Score=117.44 Aligned_cols=80 Identities=19% Similarity=0.379 Sum_probs=74.6
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
.|-+||||+-|+ .+++|..|++.|+.||.|++|+|+.+ ||||||+|++..+...|.+..+|..|+|+.|-|++
T Consensus 99 DPy~TLFv~RLn-ydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLN-YDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred Cccceeeeeecc-ccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 578999999999 99999999999999999999999886 89999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 037075 126 AKSEAGA 132 (806)
Q Consensus 126 AKs~~~~ 132 (806)
-...-..
T Consensus 178 ERgRTvk 184 (335)
T KOG0113|consen 178 ERGRTVK 184 (335)
T ss_pred ccccccc
Confidence 8765443
No 34
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.06 E-value=8.6e-10 Score=88.95 Aligned_cols=69 Identities=33% Similarity=0.564 Sum_probs=64.8
Q ss_pred EEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 56 VLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 56 tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
+|+|++|+ ..+++++|+++|..||.|..+.+... +++|||+|.+.++|..|++.+++..+.|+.|.|.|
T Consensus 1 ~i~i~~l~-~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLP-PDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCC-CccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999 89999999999999999999998875 68999999999999999999999999999999875
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.06 E-value=6.1e-10 Score=109.08 Aligned_cols=74 Identities=31% Similarity=0.486 Sum_probs=70.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
..+|||+||+ .++++++|+++|..||.|..|.+..+ +|||||+|.+.++|..|++.|+|..|.|+.|+|.++.
T Consensus 115 ~~~l~v~nL~-~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLP-YDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCC-CCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6899999999 99999999999999999999888765 6999999999999999999999999999999999986
Q ss_pred C
Q 037075 128 S 128 (806)
Q Consensus 128 s 128 (806)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 36
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.05 E-value=2.1e-10 Score=117.00 Aligned_cols=79 Identities=19% Similarity=0.334 Sum_probs=73.2
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..-..+|-|-||. +.++.++|+.+|++||.|.+|.|..+ +|||||.|....+|+.|+++|+|.+++|+.|+|.
T Consensus 10 v~gm~SLkVdNLT-yRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 10 VEGMTSLKVDNLT-YRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred cccceeEEeccee-ccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 4456789999999 99999999999999999999999876 7999999999999999999999999999999999
Q ss_pred eecCCC
Q 037075 125 FAKSEA 130 (806)
Q Consensus 125 fAKs~~ 130 (806)
+|+=..
T Consensus 89 ~arygr 94 (256)
T KOG4207|consen 89 MARYGR 94 (256)
T ss_pred hhhcCC
Confidence 998544
No 37
>smart00360 RRM RNA recognition motif.
Probab=99.00 E-value=1.3e-09 Score=86.90 Aligned_cols=65 Identities=34% Similarity=0.504 Sum_probs=60.0
Q ss_pred EecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 59 IGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 59 VGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
|+||+ ..+++++|+++|+.||.|..|.+... ++||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 1 i~~l~-~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLP-PDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCC-cccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57888 89999999999999999999998776 4699999999999999999999999999998873
No 38
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=5.8e-10 Score=117.34 Aligned_cols=76 Identities=26% Similarity=0.495 Sum_probs=71.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
.--+|||.|. ..|+-++|++.|.+||+|.+++|+++ ||||||.|-+.++|++||..|+|.-|+++.|+-.||.
T Consensus 62 hfhvfvgdls-~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDLS-PEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhcc-hhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 4468999999 89999999999999999999999987 8999999999999999999999999999999999998
Q ss_pred CCC
Q 037075 128 SEA 130 (806)
Q Consensus 128 s~~ 130 (806)
...
T Consensus 141 RKp 143 (321)
T KOG0148|consen 141 RKP 143 (321)
T ss_pred cCc
Confidence 765
No 39
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.98 E-value=1.5e-09 Score=113.49 Aligned_cols=73 Identities=22% Similarity=0.187 Sum_probs=67.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG---RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d---KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
..+|||+||+ ..+||++|+++|+.||+|.+|+|+.+ ++||||+|.+.++|+.|+ .|+|..|.++.|.|.-...
T Consensus 5 g~TV~V~NLS-~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLS-PKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCC-CCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 4689999999 99999999999999999999999986 579999999999999999 7999999999999876653
No 40
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=3.6e-10 Score=124.54 Aligned_cols=78 Identities=27% Similarity=0.431 Sum_probs=71.5
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCe-eCC--CeEEEEe
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKL-FGN--PRVHICF 125 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~-I~G--rrIrVef 125 (806)
...||||-|+ ..++|+|++++|++||.|++|.|.++ ||||||+|.++|-|..||++|||.. +.| ..|.|.|
T Consensus 124 e~KLFvg~ls-K~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 124 ERKLFVGMLS-KQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred chhhhhhhcc-ccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 5679999999 99999999999999999999999986 9999999999999999999999994 555 4599999
Q ss_pred ecCCCCC
Q 037075 126 AKSEAGA 132 (806)
Q Consensus 126 AKs~~~~ 132 (806)
|...+.+
T Consensus 203 ADtqkdk 209 (510)
T KOG0144|consen 203 ADTQKDK 209 (510)
T ss_pred cccCCCc
Confidence 9988776
No 41
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.96 E-value=1.5e-09 Score=125.99 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=67.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeC-CCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFG-NPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~-GrrIrVefA 126 (806)
-.++|||+||+ .+++|++|+++|++||.|.+|+|+.+ ||||||+|.+.++|++||+.|||..|. |+.|.|+++
T Consensus 57 ~~~~lFVgnLp-~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIP-RDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCC-CCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 35789999999 99999999999999999999998764 899999999999999999999999985 788888776
Q ss_pred c
Q 037075 127 K 127 (806)
Q Consensus 127 K 127 (806)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 4
No 42
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=2.1e-09 Score=116.19 Aligned_cols=77 Identities=29% Similarity=0.409 Sum_probs=69.8
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC-eeCCCeEEEEeecC
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGK-LFGNPRVHICFAKS 128 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~-~I~GrrIrVefAKs 128 (806)
....++||||+|. ..++|.+|+++|.+||+|+.|+++..++||||+|.+.++|+.|.+.+-.. .|+|.+|+|.|+++
T Consensus 225 D~~I~tLyIg~l~-d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 225 DTSIKTLYIGGLN-DEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ccceeEEEecccc-cchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 3456899999998 79999999999999999999999999999999999999999988655444 57999999999998
No 43
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=2.3e-09 Score=112.35 Aligned_cols=79 Identities=23% Similarity=0.407 Sum_probs=73.8
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCC------CEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGR------SYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dK------GyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
..+.|.|..|| .++|++||+.+|+..|+|++|+++++| ||+||.|-+.++|++|+..|||..+..+.|+|.||
T Consensus 40 skTNLIvNYLP-Q~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 40 SKTNLIVNYLP-QNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred ccceeeeeecc-cccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 34679999999 899999999999999999999999984 89999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037075 127 KSEAGA 132 (806)
Q Consensus 127 Ks~~~~ 132 (806)
++....
T Consensus 119 RPSs~~ 124 (360)
T KOG0145|consen 119 RPSSDS 124 (360)
T ss_pred cCChhh
Confidence 987665
No 44
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=1.3e-09 Score=112.89 Aligned_cols=72 Identities=26% Similarity=0.430 Sum_probs=64.3
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
+.||||+|+ +.++.++|++.|++||+|++..|+.+ ||||||+|.+.++|++|++.. .-.|+|++-.|..|.-
T Consensus 13 TKifVggL~-w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLA-WETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcc-cccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhhh
Confidence 579999999 99999999999999999999988876 899999999999999998754 3468999988888754
No 45
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.92 E-value=9.5e-10 Score=116.67 Aligned_cols=72 Identities=24% Similarity=0.390 Sum_probs=68.7
Q ss_pred EEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 037075 56 VLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130 (806)
Q Consensus 56 tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~ 130 (806)
.||||||+ .++++.+|+.+|++||+|++|.|+ |+||||..++...|+.||..|||.+|+|..|+|+-+|++.
T Consensus 4 KLFIGNLp-~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLP-REATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCC-cccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 59999999 999999999999999999999995 6799999999999999999999999999999999999873
No 46
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=4.8e-09 Score=109.99 Aligned_cols=75 Identities=23% Similarity=0.440 Sum_probs=70.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
.=+|||-||. .+.+|..|+++|++||.|..|+|+++ ||||||++.+-++|..||..|||..++++.|.|.|..
T Consensus 278 g~ciFvYNLs-pd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 278 GWCIFVYNLS-PDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred eeEEEEEecC-CCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 3589999999 89999999999999999999999987 8999999999999999999999999999999999986
Q ss_pred CC
Q 037075 128 SE 129 (806)
Q Consensus 128 s~ 129 (806)
+.
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 53
No 47
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.89 E-value=3.5e-09 Score=109.14 Aligned_cols=82 Identities=33% Similarity=0.471 Sum_probs=74.5
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHH----hhcCCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRK----AFSPFGEIEKITVFPG---RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLre----lFs~FGeI~~VrI~~d---KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
+..|+.||||.||+ ..+..++|++ +|++||+|.+|..+.. ||-|||.|.+.+.|..|+.+|+|..+.|+.++
T Consensus 5 ~~~pn~TlYInnLn-ekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 5 SVNPNGTLYINNLN-EKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred ccCCCceEeehhcc-ccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 34566799999999 8999999887 9999999999998754 89999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 037075 123 ICFAKSEAGA 132 (806)
Q Consensus 123 VefAKs~~~~ 132 (806)
|+||+++..-
T Consensus 84 iqyA~s~sdi 93 (221)
T KOG4206|consen 84 IQYAKSDSDI 93 (221)
T ss_pred eecccCccch
Confidence 9999986653
No 48
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=3.3e-09 Score=102.44 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=70.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
.=.|||.++. ...+|+++.+.|+-||+|+.|.+.-+ ||||+|+|++.++|.+|+++|||..+.|..|.|.|+-
T Consensus 72 GwIi~VtgvH-eEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 72 GWIIFVTGVH-EEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eEEEEEeccC-cchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 4578999999 89999999999999999999988655 8999999999999999999999999999999999997
Q ss_pred CCC
Q 037075 128 SEA 130 (806)
Q Consensus 128 s~~ 130 (806)
...
T Consensus 151 v~g 153 (170)
T KOG0130|consen 151 VKG 153 (170)
T ss_pred ecC
Confidence 644
No 49
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.86 E-value=2.6e-09 Score=113.38 Aligned_cols=84 Identities=25% Similarity=0.411 Sum_probs=76.3
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~ 130 (806)
..++++|+|||+. +.++.+||+..|++||.|.+|+|+ |+|+||.|.-.++|..|++.|+|++|.|++++|..+.++-
T Consensus 75 sk~stkl~vgNis-~tctn~ElRa~fe~ygpviecdiv--kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 75 SKASTKLHVGNIS-PTCTNQELRAKFEKYGPVIECDIV--KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred CCCccccccCCCC-ccccCHHHhhhhcccCCceeeeee--cceeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 5678899999999 999999999999999999999995 6699999999999999999999999999999999999877
Q ss_pred CCCCCCC
Q 037075 131 GANSGRG 137 (806)
Q Consensus 131 ~~~~grg 137 (806)
..+.|.+
T Consensus 152 rtapgmg 158 (346)
T KOG0109|consen 152 RTAPGMG 158 (346)
T ss_pred ccCCCCC
Confidence 6544433
No 50
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.82 E-value=8.7e-09 Score=116.19 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=64.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCC------------CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPF------------GEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~F------------GeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
.++||||||+ ..+|+++|+++|..| +.|..|.+..+++||||+|.+.++|+.|| .|+|..|.|..|
T Consensus 175 ~r~lyVgnLp-~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~l 252 (509)
T TIGR01642 175 ARRLYVGGIP-PEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSNVFL 252 (509)
T ss_pred ccEEEEeCCC-CCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCcee
Confidence 5789999999 999999999999874 45677778788999999999999999999 599999999999
Q ss_pred EEEeecC
Q 037075 122 HICFAKS 128 (806)
Q Consensus 122 rVefAKs 128 (806)
+|...+.
T Consensus 253 ~v~r~~~ 259 (509)
T TIGR01642 253 KIRRPHD 259 (509)
T ss_pred EecCccc
Confidence 9965443
No 51
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.81 E-value=6.8e-09 Score=116.89 Aligned_cols=77 Identities=21% Similarity=0.352 Sum_probs=73.6
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
.++||||++ ++++|++|..+|+..|.|.+++++.| |||||++|.+.++|+.|++.|||.++.|++|+|.|+..
T Consensus 19 ~~v~vgnip-~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIP-YEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCC-CcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 789999999 99999999999999999999999876 89999999999999999999999999999999999998
Q ss_pred CCCC
Q 037075 129 EAGA 132 (806)
Q Consensus 129 ~~~~ 132 (806)
.+..
T Consensus 98 ~~~~ 101 (435)
T KOG0108|consen 98 RKNA 101 (435)
T ss_pred cchh
Confidence 7764
No 52
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=8.7e-10 Score=110.72 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=73.8
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
.-+..||||+|+ +..||-+|..+|++||+|++|.++++ +||||..|++..+..-|+..|||..|.|+.|+|+.
T Consensus 33 kdsA~Iyiggl~-~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLP-YELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCc-ccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 457899999999 99999999999999999999999987 79999999999999999999999999999999998
Q ss_pred ecCCCCC
Q 037075 126 AKSEAGA 132 (806)
Q Consensus 126 AKs~~~~ 132 (806)
....+.+
T Consensus 112 v~~Yk~p 118 (219)
T KOG0126|consen 112 VSNYKKP 118 (219)
T ss_pred cccccCC
Confidence 7665543
No 53
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.80 E-value=5e-09 Score=105.34 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=69.2
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
..+||||||+ ..++|+.|+++|-+.|.|++|.+.++ +|||||+|.++|+|+-|++.|+...+.|++|+|.-+.
T Consensus 9 d~tiyvgnld-~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLD-EKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCC-HHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4689999999 99999999999999999999999876 7999999999999999999999999999999998876
No 54
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=1.5e-08 Score=112.43 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=71.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCee-CCCeEEEEe
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLF-GNPRVHICF 125 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I-~GrrIrVef 125 (806)
-..-||||.|| .++.|++|.-+|++.|+|-+++|+.+ ||||||+|.+.++|++|++.||+++| .|+.|.||.
T Consensus 82 ~G~EVfvGkIP-rD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 82 RGCEVFVGKIP-RDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCceEEecCCC-ccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 35789999999 99999999999999999999999876 89999999999999999999999998 799999998
Q ss_pred ecCCC
Q 037075 126 AKSEA 130 (806)
Q Consensus 126 AKs~~ 130 (806)
+-...
T Consensus 161 Svan~ 165 (506)
T KOG0117|consen 161 SVANC 165 (506)
T ss_pred eeecc
Confidence 86543
No 55
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=6.4e-09 Score=112.62 Aligned_cols=81 Identities=27% Similarity=0.390 Sum_probs=74.5
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCC------CEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGR------SYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dK------GyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
..+|-++|||+-|+ +-++.++|.-+|+.||.|..|.|++++ .||||+|++.+++++|.-.|++..|++++|+|
T Consensus 235 ~~PPeNVLFVCKLN-PVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 235 VKPPENVLFVCKLN-PVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred cCCCcceEEEEecC-CcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 35788999999999 888999999999999999999999883 49999999999999999999999999999999
Q ss_pred EeecCCCC
Q 037075 124 CFAKSEAG 131 (806)
Q Consensus 124 efAKs~~~ 131 (806)
.|+.+-..
T Consensus 314 DFSQSVsk 321 (479)
T KOG0415|consen 314 DFSQSVSK 321 (479)
T ss_pred ehhhhhhh
Confidence 99987544
No 56
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=1.1e-08 Score=113.23 Aligned_cols=78 Identities=21% Similarity=0.341 Sum_probs=69.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCe-eCC--CeEEE
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKL-FGN--PRVHI 123 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~-I~G--rrIrV 123 (806)
..-.||||-++ ..++|.||+++|++||.|.+|.|++| ||||||.|.++++|.+|+.+||+.. |-| ..|.|
T Consensus 33 ~~vKlfVgqIp-rt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 33 SAVKLFVGQIP-RTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred hhhhheeccCC-ccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 45579999999 99999999999999999999999988 7999999999999999999999985 444 55899
Q ss_pred EeecCCCC
Q 037075 124 CFAKSEAG 131 (806)
Q Consensus 124 efAKs~~~ 131 (806)
.||..++.
T Consensus 112 k~Ad~E~e 119 (510)
T KOG0144|consen 112 KYADGERE 119 (510)
T ss_pred cccchhhh
Confidence 99987664
No 57
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=1.8e-08 Score=113.81 Aligned_cols=76 Identities=28% Similarity=0.362 Sum_probs=71.0
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
+.-.|.|.||| +.+.+.+|+.+|+.||.|.+|.|... +|||||.|....+|++|++.+||..|+|+.|-|+||-
T Consensus 116 ~k~rLIIRNLP-f~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLP-FKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCC-cccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 35679999999 99999999999999999999999864 6899999999999999999999999999999999997
Q ss_pred CC
Q 037075 128 SE 129 (806)
Q Consensus 128 s~ 129 (806)
..
T Consensus 195 ~K 196 (678)
T KOG0127|consen 195 DK 196 (678)
T ss_pred cc
Confidence 63
No 58
>smart00361 RRM_1 RNA recognition motif.
Probab=98.68 E-value=4.6e-08 Score=83.39 Aligned_cols=56 Identities=29% Similarity=0.487 Sum_probs=49.1
Q ss_pred HHHHHHhhc----CCCCeeEEE-EeC--------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 69 EVILRKAFS----PFGEIEKIT-VFP--------GRSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 69 EedLrelFs----~FGeI~~Vr-I~~--------dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
+++|+++|+ +||.|.+|. |.. .+|||||+|.+.++|.+|++.|||..+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678889998 999999985 322 28999999999999999999999999999999863
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.68 E-value=1.9e-08 Score=113.81 Aligned_cols=74 Identities=24% Similarity=0.477 Sum_probs=68.8
Q ss_pred EEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 037075 56 VLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129 (806)
Q Consensus 56 tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~ 129 (806)
.||||||. ++++|++|+.+|++||.|+.|.+..+ ||||||+|.+.++|.+|++.|||.+|.|+.|+|......
T Consensus 280 rl~vgnLH-fNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 280 RLYVGNLH-FNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhcccc-cCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 39999999 99999999999999999999988766 899999999999999999999999999999999887654
Q ss_pred C
Q 037075 130 A 130 (806)
Q Consensus 130 ~ 130 (806)
-
T Consensus 359 ~ 359 (549)
T KOG0147|consen 359 V 359 (549)
T ss_pred c
Confidence 3
No 60
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=6.1e-08 Score=102.17 Aligned_cols=81 Identities=23% Similarity=0.386 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
.+.+...+|||-.|+ .++.+.||..+|.+||.|++.+++.+ |-|+||.|.+..+|..||.+|||..|+-++|+
T Consensus 280 reGPeGCNlFIYHLP-QEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLP-QEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hcCCCcceEEEEeCc-hhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 445567899999999 89999999999999999999999877 67999999999999999999999999999999
Q ss_pred EEeecCCC
Q 037075 123 ICFAKSEA 130 (806)
Q Consensus 123 VefAKs~~ 130 (806)
|...+++.
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 99987744
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.55 E-value=8.1e-08 Score=101.30 Aligned_cols=78 Identities=31% Similarity=0.501 Sum_probs=70.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCe-eCC--CeEEEEe
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKL-FGN--PRVHICF 125 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~-I~G--rrIrVef 125 (806)
.+.||||-|. ..-.|+|++++|..||+|++|.+.++ ||||||.|.+..+|..||..|||.. +-| ..|.|.|
T Consensus 19 drklfvgml~-kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 19 DRKLFVGMLN-KQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred chhhhhhhhc-ccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 4679999999 88999999999999999999999875 9999999999999999999999985 434 5699999
Q ss_pred ecCCCCC
Q 037075 126 AKSEAGA 132 (806)
Q Consensus 126 AKs~~~~ 132 (806)
+..++.+
T Consensus 98 ADTdkER 104 (371)
T KOG0146|consen 98 ADTDKER 104 (371)
T ss_pred ccchHHH
Confidence 9887764
No 62
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=6e-08 Score=105.47 Aligned_cols=69 Identities=26% Similarity=0.522 Sum_probs=65.1
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..+|||.+. +.+.|+.|+..|.+||.|++|.+--+ ||||||+|+-.|.|.-|++.|||..++|+.|+|.
T Consensus 114 cRvYVGSIs-fEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 114 CRVYVGSIS-FELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HheeeeeeE-EEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 579999999 99999999999999999999987543 8999999999999999999999999999999987
No 63
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.50 E-value=1.9e-07 Score=105.91 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=73.0
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..-+++|||.+|. ..+...+|+.+|++||+|+..+|+.+ +-|+||+|.+.++|.++|+.||-+++.|+.|.|+
T Consensus 402 s~~gRNlWVSGLS-stTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 402 STLGRNLWVSGLS-STTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred cccccceeeeccc-cchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 3456899999999 67778899999999999999888765 6799999999999999999999999999999999
Q ss_pred eecCCCCC
Q 037075 125 FAKSEAGA 132 (806)
Q Consensus 125 fAKs~~~~ 132 (806)
-+|+....
T Consensus 481 kaKNEp~G 488 (940)
T KOG4661|consen 481 KAKNEPGG 488 (940)
T ss_pred ecccCccc
Confidence 99987654
No 64
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.45 E-value=3.2e-07 Score=92.56 Aligned_cols=81 Identities=20% Similarity=0.383 Sum_probs=69.5
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEE-EEeC------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKI-TVFP------GRSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~V-rI~~------dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
..-+..||||||. ..++|..|+++|+.||.|... ++++ .++||||.|.+.|.+.+|++.|+|..++.+.|+|
T Consensus 93 l~vganlfvgNLd-~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 93 LDVGANLFVGNLD-PEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred ccccccccccccC-cchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 3445789999999 899999999999999987652 3333 2789999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 037075 124 CFAKSEAGA 132 (806)
Q Consensus 124 efAKs~~~~ 132 (806)
.|++-+...
T Consensus 172 ~ya~k~~~k 180 (203)
T KOG0131|consen 172 SYAFKKDTK 180 (203)
T ss_pred EEEEecCCC
Confidence 999865543
No 65
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=4e-07 Score=101.14 Aligned_cols=73 Identities=30% Similarity=0.420 Sum_probs=68.3
Q ss_pred EEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCC
Q 037075 57 LWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEAG 131 (806)
Q Consensus 57 LfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~~ 131 (806)
|||.||+ ..++..+|.++|+.||+|++|++..+ ||| ||+|++.++|.+|++.|||..+.|+.|.|........
T Consensus 79 ~~i~nl~-~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLD-ESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCC-cccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999 99999999999999999999999876 789 9999999999999999999999999999988766544
No 66
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.43 E-value=1.7e-07 Score=108.85 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=73.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
.++.|+|.|++ +..+..+++.+|+.||.|..|+|... +|||||+|-+..+|.+|+++|.++.+.|++|.++||
T Consensus 612 ~~tKIlVRNip-FeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 612 KGTKILVRNIP-FEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred ccceeeeeccc-hHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 36789999999 99999999999999999999999865 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 037075 127 KSEAG 131 (806)
Q Consensus 127 Ks~~~ 131 (806)
+++..
T Consensus 691 ~~d~~ 695 (725)
T KOG0110|consen 691 KSDNT 695 (725)
T ss_pred ccchH
Confidence 98654
No 67
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=5.4e-07 Score=100.14 Aligned_cols=73 Identities=27% Similarity=0.477 Sum_probs=67.7
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCC
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG---RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEAG 131 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d---KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~~ 131 (806)
..|||| + ++||.+|.++|+++|.|++|+++++ -|||||.|.+.++|++|++.||...+.|+.|+|.|+..+..
T Consensus 2 ~sl~vg--~--~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 2 ASLYVG--P--DVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred CceecC--C--cCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 469999 4 8999999999999999999999887 58999999999999999999999999999999999987554
No 68
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.37 E-value=5.2e-07 Score=102.37 Aligned_cols=77 Identities=22% Similarity=0.258 Sum_probs=72.3
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
.||||++|+ +.++.++|.++|+.+|.|..|.++.+ ||||||+|.-.+++++|++.+.+..|.|+.|+|.+++.
T Consensus 6 ~TlfV~~lp-~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 6 ATLFVSRLP-FSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred ceEEEecCC-CccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 799999999 99999999999999999999998865 79999999999999999999999999999999999987
Q ss_pred CCCC
Q 037075 129 EAGA 132 (806)
Q Consensus 129 ~~~~ 132 (806)
....
T Consensus 85 R~r~ 88 (678)
T KOG0127|consen 85 RARS 88 (678)
T ss_pred cccc
Confidence 6554
No 69
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.36 E-value=6.6e-07 Score=103.82 Aligned_cols=79 Identities=25% Similarity=0.385 Sum_probs=72.6
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC---------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG---------RSYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d---------KGyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
.+.+++||||||+ ..++|+.|...|+.||.|..|+|+-- +.||||-|.+..+|++|++.|+|..+.+..+
T Consensus 171 DP~TTNlyv~Nln-psv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLN-PSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCC-ccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 4567899999999 99999999999999999999998642 6899999999999999999999999999999
Q ss_pred EEEeecCCC
Q 037075 122 HICFAKSEA 130 (806)
Q Consensus 122 rVefAKs~~ 130 (806)
++-|+|.-.
T Consensus 250 K~gWgk~V~ 258 (877)
T KOG0151|consen 250 KLGWGKAVP 258 (877)
T ss_pred eeccccccc
Confidence 999998644
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=1.1e-06 Score=102.39 Aligned_cols=71 Identities=21% Similarity=0.323 Sum_probs=67.3
Q ss_pred EEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCC---------CEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 57 LWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGR---------SYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 57 LfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dK---------GyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
|||.||+ +..+.++|..+|.+.|.|..|.|...+ |||||+|.+.++|++|++.|+|+.|+|..|.|.++.
T Consensus 518 lfvkNln-f~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNLN-FDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcCC-cccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999 999999999999999999999886543 999999999999999999999999999999999999
Q ss_pred C
Q 037075 128 S 128 (806)
Q Consensus 128 s 128 (806)
+
T Consensus 597 ~ 597 (725)
T KOG0110|consen 597 N 597 (725)
T ss_pred C
Confidence 3
No 71
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.32 E-value=3.2e-06 Score=87.78 Aligned_cols=81 Identities=23% Similarity=0.221 Sum_probs=67.4
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeC--C-----CCEEEEEeCCHHHHHHHHHHhCCCee---CCCeEE
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFP--G-----RSYAFVQFRSIISACRAKETLQGKLF---GNPRVH 122 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~--d-----KGyAFVeF~s~EdAekAleaLnG~~I---~GrrIr 122 (806)
.-+||||.+|+ .++.-.||+.+|..|--.+.+.+-. . +.+|||+|.+..+|.+|+++|||..| .+..|+
T Consensus 33 ~VRTLFVSGLP-~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGLP-NDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeeccCC-cccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 35899999999 9999999999999995555443321 1 46999999999999999999999998 578899
Q ss_pred EEeecCCCCCCC
Q 037075 123 ICFAKSEAGANS 134 (806)
Q Consensus 123 VefAKs~~~~~~ 134 (806)
|++||+.....+
T Consensus 112 iElAKSNtK~kr 123 (284)
T KOG1457|consen 112 IELAKSNTKRKR 123 (284)
T ss_pred eeehhcCccccc
Confidence 999998765533
No 72
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.31 E-value=2.3e-06 Score=96.34 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=65.5
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC----C--CEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG----R--SYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d----K--GyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
..+|||+||| .++++.+|+++|..||.|++..|... + .||||+|.+.++++.|+++- -..|++++|.|+-.+
T Consensus 288 ~~~i~V~nlP-~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLP-PDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCC-CCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecc
Confidence 4459999999 99999999999999999998766542 2 79999999999999999875 667899999999887
Q ss_pred CCCCC
Q 037075 128 SEAGA 132 (806)
Q Consensus 128 s~~~~ 132 (806)
.....
T Consensus 366 ~~~~g 370 (419)
T KOG0116|consen 366 PGFRG 370 (419)
T ss_pred ccccc
Confidence 75443
No 73
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=3.7e-07 Score=103.90 Aligned_cols=70 Identities=26% Similarity=0.348 Sum_probs=65.7
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
.++.+|||-||+ ..|++++|+++|+.||+|..|+.-+. ++.+||+|.++.+|++|+++|++.+|.|++|+
T Consensus 73 ~~~~~L~v~nl~-~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLP-RSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecC-CcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 467899999999 99999999999999999999887554 89999999999999999999999999999998
No 74
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.24 E-value=2.6e-06 Score=87.39 Aligned_cols=78 Identities=23% Similarity=0.286 Sum_probs=69.9
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCC-CCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPF-GEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~F-GeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
......+||+.++ ..+.|.+|...|.+| |.|..+++-++ ||||||+|++.+.|+-|.++||++.+.|+.|.|
T Consensus 46 ~~~~g~~~~~~~p-~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 46 QEIEGVVYVDHIP-HGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred cCCccceeecccc-cchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 3456789999999 899999999999999 77777777554 899999999999999999999999999999999
Q ss_pred EeecCC
Q 037075 124 CFAKSE 129 (806)
Q Consensus 124 efAKs~ 129 (806)
.|-.++
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 999876
No 75
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.22 E-value=1.3e-05 Score=89.35 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=67.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhc-CCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFS-PFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs-~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
.+.+||.|++ +++...+|+++|. +-|+|+-|.++.+ |+||.|+|++.|.+++|++.||.+.+.|+.|.|.-..
T Consensus 44 ~R~vfItNIp-yd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIP-YDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCc-chhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 3569999999 9999999999995 6799999999876 8999999999999999999999999999999987655
Q ss_pred C
Q 037075 128 S 128 (806)
Q Consensus 128 s 128 (806)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 76
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.21 E-value=1.2e-06 Score=91.03 Aligned_cols=72 Identities=22% Similarity=0.365 Sum_probs=67.5
Q ss_pred EEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 037075 56 VLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130 (806)
Q Consensus 56 tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~ 130 (806)
.+|||+|+ +.+.+.+|+++|..||.|.+|.+ ..+|+||+|++..+|..|+..|||.+|+|-++.|+|++...
T Consensus 3 rv~vg~~~-~~~~~~d~E~~f~~yg~~~d~~m--k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLP-YRARERDVERFFKGYGKIPDADM--KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccC-CccchhHHHHHHhhcccccccee--ecccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 58999999 99999999999999999999988 56799999999999999999999999999999999998644
No 77
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.19 E-value=2.8e-05 Score=85.59 Aligned_cols=86 Identities=28% Similarity=0.379 Sum_probs=72.6
Q ss_pred CCCCCCCCcEEEEecCC-CCCCCHHHHHHhhcCCCCeeEEEEeCCCC-EEEEEeCCHHHHHHHHHHhCCCee--CCCeEE
Q 037075 47 TDKNAEPSEVLWIGFPA-LLKVDEVILRKAFSPFGEIEKITVFPGRS-YAFVQFRSIISACRAKETLQGKLF--GNPRVH 122 (806)
Q Consensus 47 ~~~~~~PS~tLfVGNLp-~~~vTEedLrelFs~FGeI~~VrI~~dKG-yAFVeF~s~EdAekAleaLnG~~I--~GrrIr 122 (806)
+.....++++|.+.-|+ .+.||-+.|+.+....|+|.+|.|++..+ .|.|+|++.+.|++|+++|||..| +-++|+
T Consensus 113 g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLK 192 (494)
T KOG1456|consen 113 GDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLK 192 (494)
T ss_pred CCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEE
Confidence 35556788888877664 24599999999999999999999998755 799999999999999999999998 335699
Q ss_pred EEeecCCCCC
Q 037075 123 ICFAKSEAGA 132 (806)
Q Consensus 123 VefAKs~~~~ 132 (806)
|+|||+.+-.
T Consensus 193 IeyAkP~rln 202 (494)
T KOG1456|consen 193 IEYAKPTRLN 202 (494)
T ss_pred EEecCcceee
Confidence 9999987653
No 78
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.12 E-value=3.4e-06 Score=92.16 Aligned_cols=75 Identities=16% Similarity=0.307 Sum_probs=68.9
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
-+.+||..+. .+.+|++|+.+|+.||+|++|.+-+. |||+||+|.+...-.+|+..||=..++|.-|+|--+-
T Consensus 210 fnRiYVaSvH-pDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVH-PDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecC-CCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 4789999999 99999999999999999999998764 8999999999999999999999999999999987665
Q ss_pred CC
Q 037075 128 SE 129 (806)
Q Consensus 128 s~ 129 (806)
..
T Consensus 289 TP 290 (544)
T KOG0124|consen 289 TP 290 (544)
T ss_pred CC
Confidence 43
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.98 E-value=1.3e-05 Score=89.47 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=68.5
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFP-GRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~-dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
........+|||.||| +++|.+.|++-|..||.|....|.. .+.-+.|.|.+.++|++|+..|+|..++|+.|+|.|.
T Consensus 530 ~gaarKa~qIiirNlP-~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 530 VGAARKACQIIIRNLP-FDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccccccEEEEecCC-ccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 3444557789999999 9999999999999999998877743 3666799999999999999999999999999999873
No 80
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.97 E-value=2.2e-05 Score=82.56 Aligned_cols=76 Identities=21% Similarity=0.408 Sum_probs=69.4
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
...+.+||||+. +.++.+++..+|+.||.|..|.|..+ |+|+||+|.+.+.+++|+. |+|..|.|+.|.|.+
T Consensus 99 ~d~~sv~v~nvd-~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNVD-FLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEeccc-cccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 456789999999 89988889999999999998887765 7899999999999999999 999999999999999
Q ss_pred ecCC
Q 037075 126 AKSE 129 (806)
Q Consensus 126 AKs~ 129 (806)
.+-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 9875
No 81
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.89 E-value=3.2e-05 Score=85.93 Aligned_cols=78 Identities=18% Similarity=0.266 Sum_probs=71.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEAG 131 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~~ 131 (806)
+.+|.|.||....+|.+.|..+|+-||.|.+|+|+.+ +--|.|+|.+...|+-|++.|+|..+.|++|+|.++|-..-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 5788999998566999999999999999999999877 56899999999999999999999999999999999997543
No 82
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.81 E-value=5.1e-05 Score=80.30 Aligned_cols=77 Identities=22% Similarity=0.229 Sum_probs=69.9
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
...|+|.||+ ..+++++|+++|..||+++.+.+..+ .|+|=|.|...++|++|++.++|..++|+.|+|....+
T Consensus 83 ~~~v~v~NL~-~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLP-YGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCC-cCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3679999999 99999999999999999999888766 58999999999999999999999999999999998876
Q ss_pred CCC
Q 037075 129 EAG 131 (806)
Q Consensus 129 ~~~ 131 (806)
...
T Consensus 162 ~~~ 164 (243)
T KOG0533|consen 162 PSQ 164 (243)
T ss_pred ccc
Confidence 544
No 83
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.76 E-value=1.1e-05 Score=83.77 Aligned_cols=78 Identities=21% Similarity=0.197 Sum_probs=69.6
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
.++.-+||||+|+. ..++|+.|.++|..-|.|.+|.|..+ ..||||.|.++-...-|++.|||..+.+..|+|.+
T Consensus 5 aae~drtl~v~n~~-~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMY-SGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred CcchhhHHHHHhhh-hhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccc
Confidence 34456899999999 89999999999999999999998765 23999999999999999999999999999999887
Q ss_pred ecC
Q 037075 126 AKS 128 (806)
Q Consensus 126 AKs 128 (806)
-..
T Consensus 84 r~G 86 (267)
T KOG4454|consen 84 RCG 86 (267)
T ss_pred ccC
Confidence 654
No 84
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.72 E-value=2.6e-05 Score=81.20 Aligned_cols=73 Identities=25% Similarity=0.302 Sum_probs=58.6
Q ss_pred cccCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCee
Q 037075 43 KSKMTDKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG--RSYAFVQFRSIISACRAKETLQGKLF 116 (806)
Q Consensus 43 kSk~~~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d--KGyAFVeF~s~EdAekAleaLnG~~I 116 (806)
|+.........+.||||.||. .+++|++|+.+|+.|-....++|-.. ...|||+|++++.|+.|+..|+|..|
T Consensus 199 ks~q~~~~~~acstlfianl~-~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 199 KSSQGGSGARACSTLFIANLG-PNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhcccccchhhhhHhhhccC-CCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 333333344568899999999 99999999999999975555555333 45899999999999999999999887
No 85
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.62 E-value=0.00018 Score=75.03 Aligned_cols=77 Identities=29% Similarity=0.425 Sum_probs=71.0
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeC-CCeEEEEeec
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-RSYAFVQFRSIISACRAKETLQGKLFG-NPRVHICFAK 127 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-KGyAFVeF~s~EdAekAleaLnG~~I~-GrrIrVefAK 127 (806)
..+|+.+||+.|++ ..++.+.|..+|+.|....+|+++.. ++.|||+|.+...|..|..+|+|..|. ...|+|.|++
T Consensus 142 ~~ppn~ilf~~niP-~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 142 MAPPNNILFLTNIP-SESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CCCCceEEEEecCC-cchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 35788999999999 89999999999999999999999885 789999999999999999999999996 8889999885
No 86
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.56 E-value=0.00033 Score=76.74 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=67.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
.++.+|||.|+ .+++|++|++.|.+||.|..+.+..+ ++|+||+|.+.+...+++. ..-+.|+|+.+.|.-|
T Consensus 96 ~tkkiFvGG~~-~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 96 RTKKIFVGGLP-PDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeEEEecCcC-CCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeec
Confidence 46799999999 99999999999999999988877665 7999999999998888864 6778899999999988
Q ss_pred cCCCC
Q 037075 127 KSEAG 131 (806)
Q Consensus 127 Ks~~~ 131 (806)
-+...
T Consensus 174 ~pk~~ 178 (311)
T KOG4205|consen 174 IPKEV 178 (311)
T ss_pred cchhh
Confidence 76544
No 87
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.55 E-value=7.3e-05 Score=81.72 Aligned_cols=77 Identities=26% Similarity=0.308 Sum_probs=65.4
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
....||||+|+ ++++|+.|++.|++||+|.+|.+.++ ++|+||+|.+.+...+++.. .-..|+|+.|.+.-|
T Consensus 5 ~~~KlfiGgis-w~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLS-WETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcC-ccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 45679999999 99999999999999999999999876 79999999998888888753 445688988888777
Q ss_pred cCCCC
Q 037075 127 KSEAG 131 (806)
Q Consensus 127 Ks~~~ 131 (806)
.++..
T Consensus 83 v~r~~ 87 (311)
T KOG4205|consen 83 VSRED 87 (311)
T ss_pred cCccc
Confidence 66554
No 88
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.54 E-value=0.00034 Score=63.52 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=49.6
Q ss_pred cEEEEecCCCCCCCHHH----HHHhhcCCC-CeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 037075 55 EVLWIGFPALLKVDEVI----LRKAFSPFG-EIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEed----LrelFs~FG-eI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~ 129 (806)
+.|+|.||| .+.+-.. |++++..|| +|..| ..+.|+|.|.+.+.|++|.+-|+|..+-|.+|.|.|....
T Consensus 3 s~L~V~NLP-~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLP-TNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES---TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCC-CCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 469999999 7766554 677888995 77776 3689999999999999999999999999999999999654
Q ss_pred C
Q 037075 130 A 130 (806)
Q Consensus 130 ~ 130 (806)
+
T Consensus 78 r 78 (90)
T PF11608_consen 78 R 78 (90)
T ss_dssp -
T ss_pred c
Confidence 4
No 89
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.48 E-value=0.00022 Score=78.16 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=69.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeE--------EEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEK--------ITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNP 119 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~--------VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~Gr 119 (806)
-++.|||.||| .++|-+++.++|++||-|.+ |++.++ ||=|.|.|-..++.+-|++.|++..+.|+
T Consensus 133 ~Nt~VYVsgLP-~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLP-LDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCC-CcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 35679999999 99999999999999998863 677665 78999999999999999999999999999
Q ss_pred eEEEEeecCCCC
Q 037075 120 RVHICFAKSEAG 131 (806)
Q Consensus 120 rIrVefAKs~~~ 131 (806)
.|+|+-|+-+..
T Consensus 212 ~~rVerAkfq~K 223 (382)
T KOG1548|consen 212 KLRVERAKFQMK 223 (382)
T ss_pred EEEEehhhhhhc
Confidence 999999986543
No 90
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.35 E-value=0.00078 Score=62.41 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=60.1
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCC--CCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeC----CCeEE
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPF--GEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFG----NPRVH 122 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~F--GeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~----GrrIr 122 (806)
+||.|.|+| ...|.++|.+++... |...-+-+..+ .|||||.|.+.+.|.+-.+.++|..+. .+...
T Consensus 2 TTvMirNIP-n~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIP-NKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCC-CCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 589999999 899999999888653 55444444333 799999999999999999999999874 56688
Q ss_pred EEeecCC
Q 037075 123 ICFAKSE 129 (806)
Q Consensus 123 VefAKs~ 129 (806)
|.||+-+
T Consensus 81 i~yAriQ 87 (97)
T PF04059_consen 81 ISYARIQ 87 (97)
T ss_pred EehhHhh
Confidence 9998754
No 91
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.22 E-value=0.00027 Score=74.98 Aligned_cols=69 Identities=26% Similarity=0.456 Sum_probs=60.8
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
-.||.|.|. .+++.+.|.+.|.+|-.....+++++ |||+||.|.+.+++.+|+.+|+|+-++.+.|++.
T Consensus 191 fRIfcgdlg-Nevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 191 FRIFCGDLG-NEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred ceeeccccc-ccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 579999999 88999999999999976655555554 8999999999999999999999999999988764
No 92
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.07 E-value=0.0057 Score=67.96 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=73.1
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~ 130 (806)
.+..++.|-+|...++.-+.|-.+|+.||.|++|++++. .+-|.|++.+..+.++|+..||+..+-|.+|.|+++|...
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccc
Confidence 457899999998566888999999999999999999876 5899999999999999999999999999999999999865
Q ss_pred CC
Q 037075 131 GA 132 (806)
Q Consensus 131 ~~ 132 (806)
-.
T Consensus 365 v~ 366 (494)
T KOG1456|consen 365 VS 366 (494)
T ss_pred cc
Confidence 43
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.06 E-value=0.0012 Score=73.70 Aligned_cols=85 Identities=27% Similarity=0.316 Sum_probs=71.3
Q ss_pred ccCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeE-EEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCeeCCC-e
Q 037075 44 SKMTDKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEK-ITVFP-GRSYAFVQFRSIISACRAKETLQGKLFGNP-R 120 (806)
Q Consensus 44 Sk~~~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~-VrI~~-dKGyAFVeF~s~EdAekAleaLnG~~I~Gr-r 120 (806)
+|.-..-.+|+.+|+..|++ ..++|++|+.+|..-|-.++ .+.+. ++.+|++.++++|+|..|+-.||...+++. .
T Consensus 404 sKN~~ni~PpsatlHlsnip-~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~h 482 (492)
T KOG1190|consen 404 SKNYQNIFPPSATLHLSNIP-PSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHH 482 (492)
T ss_pred cccccccCCchhheeeccCC-cccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCce
Confidence 34434445899999999999 99999999999999986654 44444 578999999999999999999999998766 7
Q ss_pred EEEEeecCC
Q 037075 121 VHICFAKSE 129 (806)
Q Consensus 121 IrVefAKs~ 129 (806)
|+|.|+|+.
T Consensus 483 lRvSFSks~ 491 (492)
T KOG1190|consen 483 LRVSFSKST 491 (492)
T ss_pred EEEEeeccc
Confidence 999999863
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.02 E-value=0.00038 Score=72.68 Aligned_cols=66 Identities=32% Similarity=0.448 Sum_probs=59.1
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
..|.|-++. ..+.+.+|.++|+++|++....+ ..+++||+|.+.++|.+|++.|+|..+.++.|++
T Consensus 100 ~r~~~~~~~-~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 100 FRLIVRNLS-LRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ceeeeccch-hhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 456777887 77889999999999999965544 6889999999999999999999999999999999
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.99 E-value=0.0013 Score=72.00 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=60.4
Q ss_pred CcEEEEecCCCCCCCHHH----H--HHhhcCCCCeeEEEEeCC-------CC-E-EEEEeCCHHHHHHHHHHhCCCeeCC
Q 037075 54 SEVLWIGFPALLKVDEVI----L--RKAFSPFGEIEKITVFPG-------RS-Y-AFVQFRSIISACRAKETLQGKLFGN 118 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEed----L--relFs~FGeI~~VrI~~d-------KG-y-AFVeF~s~EdAekAleaLnG~~I~G 118 (806)
.+-+||-+|+ ..+..++ | .+.|.+||.|.+|.|.+. .+ + .||+|.+.|+|.+||...+|..++|
T Consensus 114 KNLvYVigi~-pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIGIP-PKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEecCC-CCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3567888888 6655444 4 379999999999988654 12 3 3999999999999999999999999
Q ss_pred CeEEEEeecC
Q 037075 119 PRVHICFAKS 128 (806)
Q Consensus 119 rrIrVefAKs 128 (806)
+.|+..|...
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999998754
No 96
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.98 E-value=0.0018 Score=77.86 Aligned_cols=82 Identities=24% Similarity=0.357 Sum_probs=75.2
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCC--CeEEEEeec
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGN--PRVHICFAK 127 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~G--rrIrVefAK 127 (806)
...+++.||||.|. ..+....|...|..||.|..|.+-.+..||+|.|++...|+.|+..|.|..|+| ++|+|.|++
T Consensus 451 kst~ttr~~sgglg-~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLG-PWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCC-CCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 66789999999999 889999999999999999999998888899999999999999999999999976 569999999
Q ss_pred CCCCC
Q 037075 128 SEAGA 132 (806)
Q Consensus 128 s~~~~ 132 (806)
...+.
T Consensus 530 ~~~~~ 534 (975)
T KOG0112|consen 530 PPGAT 534 (975)
T ss_pred CCCCC
Confidence 86654
No 97
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.96 E-value=0.0015 Score=54.01 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=42.1
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHH
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAK 108 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAl 108 (806)
+.|-|.+.+ .+.. +++.++|..||+|+++.+.....+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~-~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFP-PDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeEC-chHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 456666666 3433 556679999999999999777899999999999999985
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.96 E-value=0.0023 Score=59.75 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=45.5
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC-----eeCCCeEEEE
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGK-----LFGNPRVHIC 124 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~-----~I~GrrIrVe 124 (806)
.+|+|.++. ..++.++|+++|+.||.|.-|.+..+..-|||.|.+.+.|++|++.+.-. .|.+..+++.
T Consensus 2 ~il~~~g~~-~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLG-EPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE---SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCC-CCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 468888888 78999999999999999999999888889999999999999999877544 4566555544
No 99
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.67 E-value=0.0014 Score=73.70 Aligned_cols=62 Identities=24% Similarity=0.324 Sum_probs=54.9
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-------------------CCEEEEEeCCHHHHHHHHHHhC
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-------------------RSYAFVQFRSIISACRAKETLQ 112 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-------------------KGyAFVeF~s~EdAekAleaLn 112 (806)
-++++|.+.||+ .+-.-+-|.++|+.||.|..|+|+.. +-||||+|+..+.|.+|.+.|+
T Consensus 229 l~srtivaenLP-~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLP-LDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCC-cchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 489999999999 77677889999999999999999753 4589999999999999999885
Q ss_pred CC
Q 037075 113 GK 114 (806)
Q Consensus 113 G~ 114 (806)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 54
No 100
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.59 E-value=0.0045 Score=71.58 Aligned_cols=81 Identities=23% Similarity=0.336 Sum_probs=63.3
Q ss_pred CCCCCCCcEEEEecCCCCC--CCHH-------HHHHhhcCCCCeeEEEEeCC---------CCEEEEEeCCHHHHHHHHH
Q 037075 48 DKNAEPSEVLWIGFPALLK--VDEV-------ILRKAFSPFGEIEKITVFPG---------RSYAFVQFRSIISACRAKE 109 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~--vTEe-------dLrelFs~FGeI~~VrI~~d---------KGyAFVeF~s~EdAekAle 109 (806)
.....|+.+|+..|+=..+ .+++ +++.-+++||.|..|.+.+. -|..||+|.+.++|++|++
T Consensus 393 q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~ 472 (500)
T KOG0120|consen 393 QMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAME 472 (500)
T ss_pred ccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHH
Confidence 4556678888887753111 2232 24556789999999998764 5788999999999999999
Q ss_pred HhCCCeeCCCeEEEEeecC
Q 037075 110 TLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 110 aLnG~~I~GrrIrVefAKs 128 (806)
+|+|.++.|+.|...|-..
T Consensus 473 ~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 473 ELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HccCceeCCcEEEEEecCH
Confidence 9999999999999988654
No 101
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.53 E-value=0.002 Score=74.72 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=67.3
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhc-CCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCee---CCCeEEEEeec
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFS-PFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLF---GNPRVHICFAK 127 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs-~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I---~GrrIrVefAK 127 (806)
.++++|||.||- .-+|.-.|+.++. .+|.|++..|-+-|..|||.|.+.++|.+.+.+|||..+ +++.|.|.|..
T Consensus 442 ~~SnvlhI~nLv-RPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 442 EPSNVLHIDNLV-RPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred CccceEeeeccc-ccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 568999999998 7899999999999 567788876655589999999999999999999999976 67889999987
Q ss_pred CC
Q 037075 128 SE 129 (806)
Q Consensus 128 s~ 129 (806)
..
T Consensus 521 ~d 522 (718)
T KOG2416|consen 521 AD 522 (718)
T ss_pred hh
Confidence 53
No 102
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.44 E-value=0.0028 Score=68.75 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=67.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
.+.++|++++ +.+++++|+.+|..+|.|..+++... ++||||.|.+...+..|+.. +...+.+..+.|.+.+
T Consensus 185 ~~~~~~~~~~-f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 185 DTIFFVGELD-FSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccceeecccc-cccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 3445599999 99999999999999999999998654 78999999999999999988 8889999999999998
Q ss_pred CCCC
Q 037075 128 SEAG 131 (806)
Q Consensus 128 s~~~ 131 (806)
....
T Consensus 263 ~~~~ 266 (285)
T KOG4210|consen 263 PRPK 266 (285)
T ss_pred CCcc
Confidence 7654
No 103
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.43 E-value=0.0046 Score=71.36 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=60.9
Q ss_pred CCCcEEEEecCCCC-CCC--------HHHHHHhhcCCCCeeEEEEeCCC-CEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 52 EPSEVLWIGFPALL-KVD--------EVILRKAFSPFGEIEKITVFPGR-SYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 52 ~PS~tLfVGNLp~~-~vT--------EedLrelFs~FGeI~~VrI~~dK-GyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
.++.+|.+.|+-.+ ..| ++++.+-.++||.|..|.|.+.. ||.||.|.+.+.|..|+++|||.-|.|+.|
T Consensus 441 i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~I 520 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMI 520 (549)
T ss_pred CccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhcccee
Confidence 46677777775311 111 13455566999999999997764 999999999999999999999999999999
Q ss_pred EEEeecC
Q 037075 122 HICFAKS 128 (806)
Q Consensus 122 rVefAKs 128 (806)
++.|-.-
T Consensus 521 ta~~~~~ 527 (549)
T KOG0147|consen 521 TAKYLPL 527 (549)
T ss_pred EEEEeeh
Confidence 9998754
No 104
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.26 E-value=0.0092 Score=66.03 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=68.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeE--------EEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEK--------ITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGN 118 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~--------VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~G 118 (806)
-..++||-+|+ ..+++++|.++|.++|.|.. |.|.++ |+=|.|+|.+...|+.|+..++++.+.+
T Consensus 65 ~~~ti~v~g~~-d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 65 DNETIFVWGCP-DSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred ccccceeeccC-ccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 35689999999 89999999999999998863 333333 7899999999999999999999999999
Q ss_pred CeEEEEeecCCCCC
Q 037075 119 PRVHICFAKSEAGA 132 (806)
Q Consensus 119 rrIrVefAKs~~~~ 132 (806)
..|+|.+|......
T Consensus 144 n~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 144 NTIKVSLAERRTGV 157 (351)
T ss_pred CCchhhhhhhccCc
Confidence 99999999876644
No 105
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.23 E-value=0.0028 Score=73.22 Aligned_cols=77 Identities=17% Similarity=0.315 Sum_probs=69.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
...+||++|+ ..+++..++++...||.+....++.+ |+|||.+|.+......|+..|||..+.++.|.|..|-
T Consensus 289 ~~ki~v~~lp-~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 289 PNKIFVGGLP-LYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred cchhhhccCc-CccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 3568999999 89999999999999999988777665 8999999999999999999999999999999999987
Q ss_pred CCCC
Q 037075 128 SEAG 131 (806)
Q Consensus 128 s~~~ 131 (806)
....
T Consensus 368 ~g~~ 371 (500)
T KOG0120|consen 368 VGAS 371 (500)
T ss_pred ccch
Confidence 6544
No 106
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.12 E-value=0.019 Score=53.61 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=51.7
Q ss_pred EEEEecCCCCCCCHHHHHHhhcCCCCeeEEE-------------EeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE-
Q 037075 56 VLWIGFPALLKVDEVILRKAFSPFGEIEKIT-------------VFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRV- 121 (806)
Q Consensus 56 tLfVGNLp~~~vTEedLrelFs~FGeI~~Vr-------------I~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrI- 121 (806)
.|.|-+.+ .-....+.+.|++||+|++.. +....++-.|+|.+..+|.+||. -||..|.|..|
T Consensus 8 wVtVFGfp--~~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 8 WVTVFGFP--PSASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp EEEEE-----GGGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred EEEEEccC--HHHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 45555555 236678889999999999875 56678999999999999999996 69999998764
Q ss_pred EEEeecC
Q 037075 122 HICFAKS 128 (806)
Q Consensus 122 rVefAKs 128 (806)
-|.|+++
T Consensus 85 GV~~~~~ 91 (100)
T PF05172_consen 85 GVKPCDP 91 (100)
T ss_dssp EEEE-HH
T ss_pred EEEEcHH
Confidence 5777753
No 107
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.91 E-value=0.0037 Score=66.54 Aligned_cols=57 Identities=25% Similarity=0.392 Sum_probs=49.3
Q ss_pred HHHhhc-CCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 72 LRKAFS-PFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 72 LrelFs-~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
|...|+ +||+|++++|..+ +|=+||.|...++|++|++.|||.-+.|+.|..+++.-
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 333444 8999999987664 78899999999999999999999999999999999864
No 108
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.85 E-value=0.019 Score=66.60 Aligned_cols=71 Identities=24% Similarity=0.344 Sum_probs=57.0
Q ss_pred CcEEEEecCCCCCCCHH-------HHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCC-Ce
Q 037075 54 SEVLWIGFPALLKVDEV-------ILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGN-PR 120 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEe-------dLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~G-rr 120 (806)
-++++|-|+| .+-+. .|.++|+++|+|+.+.+..+ +||.|++|.+..+|+.|++.|||+.++- .+
T Consensus 58 D~vVvv~g~P--vV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAP--VVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred ceEEEECCCc--ccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4688999988 33332 36689999999999888754 8999999999999999999999999854 45
Q ss_pred EEEEee
Q 037075 121 VHICFA 126 (806)
Q Consensus 121 IrVefA 126 (806)
+.|..-
T Consensus 136 f~v~~f 141 (698)
T KOG2314|consen 136 FFVRLF 141 (698)
T ss_pred EEeehh
Confidence 665533
No 109
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.74 E-value=0.025 Score=62.60 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=60.7
Q ss_pred CCcEEEEecCCCCC---CC-------HHHHHHhhcCCCCeeEEEEe--CCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCe
Q 037075 53 PSEVLWIGFPALLK---VD-------EVILRKAFSPFGEIEKITVF--PGRSYAFVQFRSIISACRAKETLQGKLFGNPR 120 (806)
Q Consensus 53 PS~tLfVGNLp~~~---vT-------EedLrelFs~FGeI~~VrI~--~dKGyAFVeF~s~EdAekAleaLnG~~I~Grr 120 (806)
-.++|.|.|+-... .+ +++|++-..+||.|.+|.|+ ...|.+-|.|.+.++|..||+.|+|+-|+|+.
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 35788888874111 22 34566778899999999998 45899999999999999999999999999999
Q ss_pred EEEEeec
Q 037075 121 VHICFAK 127 (806)
Q Consensus 121 IrVefAK 127 (806)
|.-....
T Consensus 344 l~A~i~D 350 (382)
T KOG1548|consen 344 LTASIWD 350 (382)
T ss_pred EEEEEeC
Confidence 9876653
No 110
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.65 E-value=0.02 Score=62.27 Aligned_cols=61 Identities=28% Similarity=0.490 Sum_probs=52.5
Q ss_pred HHHHHHhhcCCCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 037075 69 EVILRKAFSPFGEIEKITVFPG-------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129 (806)
Q Consensus 69 EedLrelFs~FGeI~~VrI~~d-------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~ 129 (806)
|+++++-.++||.|.+|.|+.. .---||+|+..++|.+|+-.|||+.|+|+.++-+|-+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 3467788999999999998765 235799999999999999999999999999999886543
No 111
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.53 E-value=0.036 Score=63.63 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=59.0
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
....|-+..|| +.+|++||.++|+-++ |+++.+.+. .|=|||+|.+.|++++|++ .+-..+..+-|.|--+..
T Consensus 9 ~~~~vr~rGLP-wsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLP-WSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCC-ccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 34556678999 9999999999999998 888777654 6789999999999999997 455566667787766644
No 112
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.46 E-value=0.0086 Score=63.92 Aligned_cols=67 Identities=25% Similarity=0.369 Sum_probs=59.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCC----------------C--EEEEEeCCHHHHHHHHHHhCCC
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGR----------------S--YAFVQFRSIISACRAKETLQGK 114 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dK----------------G--yAFVeF~s~EdAekAleaLnG~ 114 (806)
.+-+||+++|| ..+.-.-|+++|+.||+|-+|-+.+.. . =|.|+|.+...|....+.|||.
T Consensus 73 k~GVvylS~IP-p~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIP-PYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCC-CccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 46799999999 999999999999999999999886541 1 2789999999999999999999
Q ss_pred eeCCCe
Q 037075 115 LFGNPR 120 (806)
Q Consensus 115 ~I~Grr 120 (806)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999875
No 113
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.41 E-value=0.31 Score=54.36 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=59.7
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCC--CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE-EEEe
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFG--EIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRV-HICF 125 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FG--eI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrI-rVef 125 (806)
-++|||||- +.+|+++|.+.....| .|.+++++.+ ||||+|...+....++-++.|--++|.|..- .+.|
T Consensus 81 ~~~YvGNL~-W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLL-WYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEeccee-EEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 368999999 9999999999888877 5667777754 8999999999999999999999999988763 4444
Q ss_pred ec
Q 037075 126 AK 127 (806)
Q Consensus 126 AK 127 (806)
.|
T Consensus 160 NK 161 (498)
T KOG4849|consen 160 NK 161 (498)
T ss_pred ch
Confidence 44
No 114
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.13 E-value=0.14 Score=58.95 Aligned_cols=72 Identities=19% Similarity=0.131 Sum_probs=55.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeE-EEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEK-ITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~-VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
+.-+|-+..|| +.|||++|.++|+-.--|.. |.++.+ .+=|||+|++.+.|++|+.. |...|+-+-|.|.-+
T Consensus 102 ~d~vVRLRGLP-fscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLP-FSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCC-ccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 45678889999 99999999999998765544 434333 46799999999999999863 455566666777655
No 115
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.81 E-value=0.099 Score=52.09 Aligned_cols=74 Identities=24% Similarity=0.388 Sum_probs=58.0
Q ss_pred CCCCcEEEEecCCCCCCC-HHHH---HHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 51 AEPSEVLWIGFPALLKVD-EVIL---RKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vT-EedL---relFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
.+|-.||.|.-|. .++. .++| ...++.||.|.+|.++ ++.-|.|.|.+..+|++|+.+++. ..-|..+++.|-
T Consensus 83 epPMsTIVVRWlk-knm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLK-KNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhh-hcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 4667788888776 5543 3444 4567889999999764 788999999999999999999887 567778888885
Q ss_pred c
Q 037075 127 K 127 (806)
Q Consensus 127 K 127 (806)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 4
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.34 E-value=0.14 Score=51.01 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=52.8
Q ss_pred CCCCcEEEEecCC-----CCCCCH---HHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 51 AEPSEVLWIGFPA-----LLKVDE---VILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 51 ~~PS~tLfVGNLp-----~~~vTE---edLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
.+|-.|+.|.-.. ...+.+ .+|.+.|..||+|.-|+++.+ .-.|+|.+-+.|-+|+ .|+|..|+|+.|+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--~mwVTF~dg~sALaal-s~dg~~v~g~~l~ 100 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--TMWVTFRDGQSALAAL-SLDGIQVNGRTLK 100 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--CEEEEESSCHHHHHHH-HGCCSEETTEEEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--eEEEEECccHHHHHHH-ccCCcEECCEEEE
Confidence 3556666665443 011333 257789999999999998764 7899999999999998 5999999999999
Q ss_pred EEeecCCCC
Q 037075 123 ICFAKSEAG 131 (806)
Q Consensus 123 VefAKs~~~ 131 (806)
|....++.-
T Consensus 101 i~LKtpdW~ 109 (146)
T PF08952_consen 101 IRLKTPDWL 109 (146)
T ss_dssp EEE------
T ss_pred EEeCCccHH
Confidence 998776543
No 117
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.31 E-value=0.081 Score=54.33 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=49.6
Q ss_pred CHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhC--CCeeCCCeEEEEeecC
Q 037075 68 DEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQ--GKLFGNPRVHICFAKS 128 (806)
Q Consensus 68 TEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLn--G~~I~GrrIrVefAKs 128 (806)
..+.|+++|..|+.+..+..++.-+-..|.|.+.++|++|+..|+ +..+.|..|+|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 567899999999999999999998889999999999999999999 9999999999999954
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.88 E-value=0.017 Score=69.95 Aligned_cols=75 Identities=27% Similarity=0.376 Sum_probs=66.2
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
-+.+||+|||. ..+++.+|+.+|..||.|.+|.|-.. -.||||.|.+...+-.|+..+.|..|....+++.+..
T Consensus 371 atrTLf~Gnl~-~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLD-SKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcc-cchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 47899999999 89999999999999999999887433 4699999999999999999999999977777777774
Q ss_pred C
Q 037075 128 S 128 (806)
Q Consensus 128 s 128 (806)
.
T Consensus 450 ~ 450 (975)
T KOG0112|consen 450 P 450 (975)
T ss_pred c
Confidence 3
No 119
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.55 E-value=0.067 Score=60.60 Aligned_cols=76 Identities=24% Similarity=0.203 Sum_probs=60.9
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC-eeCCCeEEEEeecCCCC
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGK-LFGNPRVHICFAKSEAG 131 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~-~I~GrrIrVefAKs~~~ 131 (806)
+.||||||. ..++..+|+.+|...---..=.++...+|+||.+.+..-|.+|++.++|+ ++.|+++.|+++-+.+.
T Consensus 2 nklyignL~-p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLS-PQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccC-CCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 468999999 99999999999976411111122335789999999999999999999998 47999999999876554
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.43 E-value=0.33 Score=58.02 Aligned_cols=71 Identities=21% Similarity=0.165 Sum_probs=59.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCee-EEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIE-KITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~-~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
.++|-+.|++ ++++-+||.++|.-|-.+- +|++-.+ .|=|.|.|++.++|.+|...|+++.|..++|++.+
T Consensus 867 p~V~~~~n~P-f~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFP-FDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCC-ccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3588999999 9999999999999996553 3433222 46899999999999999999999999999988764
No 121
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=92.15 E-value=0.14 Score=57.75 Aligned_cols=66 Identities=17% Similarity=0.331 Sum_probs=56.3
Q ss_pred EEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC---------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 56 VLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG---------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 56 tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d---------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
+|.|.||. ..++.+.++.+|...|+|.++.+++. ...|||.|.+...+..| +.|.++.|-++.|.|
T Consensus 9 vIqvanis-psat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdraliv 83 (479)
T KOG4676|consen 9 VIQVANIS-PSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALIV 83 (479)
T ss_pred eeeecccC-chhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeeeeEEE
Confidence 89999999 99999999999999999999998874 45899999999988877 467777776666544
No 122
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.09 E-value=0.3 Score=53.62 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=48.7
Q ss_pred CCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCe-EEEEe
Q 037075 67 VDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPR-VHICF 125 (806)
Q Consensus 67 vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~Grr-IrVef 125 (806)
-.-..|..+|++||+|++.......++-+|.|.++-+|.+||. -+|+.|+|.. |-|.-
T Consensus 208 g~~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 208 GQVSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred cchhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 4556788999999999998887677899999999999999996 5999998876 34443
No 123
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.06 E-value=0.085 Score=63.86 Aligned_cols=65 Identities=26% Similarity=0.323 Sum_probs=58.6
Q ss_pred CCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCee--CCCeEEEEeecCCC
Q 037075 66 KVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLF--GNPRVHICFAKSEA 130 (806)
Q Consensus 66 ~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I--~GrrIrVefAKs~~ 130 (806)
..+..-|..+|+.||+|.++++.++-..|.|+|.+.+.|..|+++|+|+++ .|...+|.|||.-.
T Consensus 309 ~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 309 NLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred cchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 356667899999999999999999999999999999999999999999975 67889999998744
No 124
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.58 E-value=0.98 Score=41.50 Aligned_cols=54 Identities=28% Similarity=0.367 Sum_probs=42.9
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhC
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQ 112 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLn 112 (806)
-++||..+ ......||.++|+.||.|.=-.| +-.-|||...+.+.|..|+..+.
T Consensus 10 HVFhltFP--keWK~~DI~qlFspfG~I~VsWi--~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFP--KEWKTSDIYQLFSPFGQIYVSWI--NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE----TT--HHHHHHHCCCCCCEEEEEE--CTTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCc--hHhhhhhHHHHhccCCcEEEEEE--cCCcEEEEeecHHHHHHHHHHhc
Confidence 47888855 48899999999999999865445 66799999999999999999885
No 125
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=91.24 E-value=0.33 Score=56.37 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=49.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeE-E-------EEeCCCC---EEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEK-I-------TVFPGRS---YAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~-V-------rI~~dKG---yAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
++.||||+|+ .+|+|++|...|..||.+.- . .-...+| |+|+.|+++.....-+.+.. .+...+.
T Consensus 259 S~KVFvGGlp-~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~---~~~~~~y 334 (520)
T KOG0129|consen 259 SRKVFVGGLP-WDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS---EGEGNYY 334 (520)
T ss_pred ccceeecCCC-ccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh---hcccceE
Confidence 6789999999 99999999999999997641 1 1122367 99999999887766554443 3444444
Q ss_pred EEee
Q 037075 123 ICFA 126 (806)
Q Consensus 123 VefA 126 (806)
++.+
T Consensus 335 f~vs 338 (520)
T KOG0129|consen 335 FKVS 338 (520)
T ss_pred EEEe
Confidence 4443
No 126
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=91.22 E-value=0.45 Score=55.26 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=52.9
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhc-CCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHH
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFS-PFGEIEKITVFPG------RSYAFVQFRSIISACRAKET 110 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs-~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAlea 110 (806)
.....|.+|||||.|+ --++.++|..+|+ -||.|+-+-|-.| ||-|-|+|.+..+=.+||.+
T Consensus 364 sq~lDprrTVFVGgvp-rpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLP-RPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCC-CcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3445789999999999 8899999999999 7999987666544 78999999999998888864
No 127
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.35 E-value=0.12 Score=57.27 Aligned_cols=73 Identities=16% Similarity=0.303 Sum_probs=59.8
Q ss_pred cEEEEecCCCCC-CCHHHHH--HhhcCCCCeeEEEEeCCC---------CEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 55 EVLWIGFPALLK-VDEVILR--KAFSPFGEIEKITVFPGR---------SYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 55 ~tLfVGNLp~~~-vTEedLr--elFs~FGeI~~VrI~~dK---------GyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
+-+||-.|+ .. .+|..|+ +.|.+||.|.+|.+..+. --++|+|+..++|..||...+|...+|+.|+
T Consensus 78 nlvyvvgl~-~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLP-LDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCC-ccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 446777777 44 5566665 589999999999987753 1489999999999999999999999999988
Q ss_pred EEeecC
Q 037075 123 ICFAKS 128 (806)
Q Consensus 123 VefAKs 128 (806)
..|+..
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 888765
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=90.28 E-value=0.23 Score=60.31 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=69.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
...|+|.|++ +..|.++|+.+|..+|.+++++++.. +|.|||.|.+..+|.++...+++..+.-+.+.|..+++
T Consensus 736 K~~v~i~g~p-f~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPP-FQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCC-CCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 5678999999 99999999999999999999876543 78999999999999999999988888888888888777
Q ss_pred CCCCCCC
Q 037075 129 EAGANSG 135 (806)
Q Consensus 129 ~~~~~~g 135 (806)
.....++
T Consensus 815 ~~~K~k~ 821 (881)
T KOG0128|consen 815 ERDKKKG 821 (881)
T ss_pred ccccccc
Confidence 5544443
No 129
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=88.78 E-value=0.25 Score=56.90 Aligned_cols=62 Identities=26% Similarity=0.329 Sum_probs=54.0
Q ss_pred CHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 037075 68 DEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130 (806)
Q Consensus 68 TEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~ 130 (806)
+-++|..+|.+||+|..|.+-..---|.|+|.+..+|-+|. ..++..|+++-|+|.|-+...
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhhhcCccccccccCchhhheeeeeccccccchh-ccccceecCceeEEEEecCCc
Confidence 66889999999999999998655567999999999997776 468999999999999998744
No 130
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.58 E-value=1.4 Score=52.15 Aligned_cols=75 Identities=25% Similarity=0.334 Sum_probs=60.7
Q ss_pred CCCCcEEEEecCCCCC-CCHHHHHHhhcCC----CCeeEEEEeCC--------------C--------------------
Q 037075 51 AEPSEVLWIGFPALLK-VDEVILRKAFSPF----GEIEKITVFPG--------------R-------------------- 91 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~-vTEedLrelFs~F----GeI~~VrI~~d--------------K-------------------- 91 (806)
..++++|-|.|+. ++ +.-.+|..+|..| |.|.+|.|.+. .
T Consensus 171 ~~~T~RLAVvNMD-Wd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNMD-WDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEeccc-cccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 4578999999999 65 8899999998877 69999987642 1
Q ss_pred -------------------CEEEEEeCCHHHHHHHHHHhCCCeeCCC--eEEEEee
Q 037075 92 -------------------SYAFVQFRSIISACRAKETLQGKLFGNP--RVHICFA 126 (806)
Q Consensus 92 -------------------GyAFVeF~s~EdAekAleaLnG~~I~Gr--rIrVefA 126 (806)
=||.|+|.+++.|.+.++.++|..+... .|.+.|-
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1899999999999999999999998544 3444443
No 131
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=87.99 E-value=1 Score=53.02 Aligned_cols=72 Identities=10% Similarity=0.071 Sum_probs=55.2
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcC--CCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC--eeCCCeE
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSP--FGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGK--LFGNPRV 121 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~--FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~--~I~GrrI 121 (806)
.+....-+++.+.-|+ ..+-+++++.+|.. |-++.+|.+..+. -.||+|++.+||+.|.+.|.-. +|.|+.|
T Consensus 169 Vrp~~kRcIvilREIp-ettp~e~Vk~lf~~encPk~iscefa~N~-nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 169 VRPNHKRCIVILREIP-ETTPIEVVKALFKGENCPKVISCEFAHND-NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred cccCcceeEEEEeecC-CCChHHHHHHHhccCCCCCceeeeeeecC-ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 3444555677888999 88889999999975 7889999876554 4799999999999999877433 4555554
No 132
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.75 E-value=2.4 Score=37.01 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=40.7
Q ss_pred EEEEecCCCCCCCHHHHHHhhcCCCC-----eeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 56 VLWIGFPALLKVDEVILRKAFSPFGE-----IEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 56 tLfVGNLp~~~vTEedLrelFs~FGe-----I~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
+|||.---...++..+|..+++.-+. |-+|.| ...|+||+-.. +.|..+++.|++..+.|+.|+|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I--~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDI--FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEE--eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45653222135889999999988754 456777 45699999886 5789999999999999999999864
No 133
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=86.33 E-value=11 Score=39.39 Aligned_cols=61 Identities=11% Similarity=-0.018 Sum_probs=54.8
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeC
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFG 117 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~ 117 (806)
..+.|..|+ ..-+.++|++++-+-|.|+-..+.++ +++.|+|...|+-+-|+..|....+.
T Consensus 116 ~RVvVsGLp-~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 116 YRVVVSGLP-PSGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeEEEecCC-CCCchHHHHHHHHhhCCeeeeeeecc-cceeeeeeehhhHHHHHHhhcccccc
Confidence 467899999 89999999999999999998888766 59999999999999999999988763
No 134
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=86.23 E-value=4.6 Score=38.55 Aligned_cols=65 Identities=26% Similarity=0.351 Sum_probs=50.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCC-CCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPF-GEIEKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGN 118 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~F-GeI~~VrI~~d----KGyAFVeF~s~EdAekAleaLnG~~I~G 118 (806)
.+..+.+..++ .-++-++|..+.+.+ ..|..++|+++ +=.+.+.|.+.++|.+-.+..||+.++.
T Consensus 12 ~~~~~~l~vp~-~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPP-YMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCc-ccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 35566666666 566777777776766 46778888887 3378999999999999999999997743
No 135
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=85.84 E-value=2.8 Score=36.43 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=43.3
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCC---CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHh
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPF---GEIEKITVFPGRSYAFVQFRSIISACRAKETL 111 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~F---GeI~~VrI~~dKGyAFVeF~s~EdAekAleaL 111 (806)
..|+|.++. +++.++++..|..| ....+|..+-+ .-|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd--~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD--ELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC--CCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 468999997 89999999999998 13456665544 46779999999999999765
No 136
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=84.09 E-value=1 Score=48.59 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=49.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQ 112 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLn 112 (806)
.+.|||.||. ..++.+.|.+.|+.||.|....++.+ .+=++|.|...-.|.+|+..+.
T Consensus 31 ~a~l~V~nl~-~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 31 HAELYVVNLM-QGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred cceEEEEecc-hhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 3789999999 88999999999999999987655544 3568999999999999998773
No 137
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=82.89 E-value=1.4 Score=45.03 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=50.2
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcC-CCCeeEEEEeC---C--------CCEEEEEeCCHHHHHHHHHHhCCCeeCCC--
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSP-FGEIEKITVFP---G--------RSYAFVQFRSIISACRAKETLQGKLFGNP-- 119 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~-FGeI~~VrI~~---d--------KGyAFVeF~s~EdAekAleaLnG~~I~Gr-- 119 (806)
...|.|.+|| +++||+++.+.++. ++.......+. . -.-|||.|.+.++...-++.++|..|.+.
T Consensus 7 ~~KvVIR~LP-P~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 7 GTKVVIRRLP-PNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp --EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred CceEEEeCCC-CCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3478999999 99999999998887 77663222222 1 24799999999999999999999887432
Q ss_pred ---eEEEEeecCCC
Q 037075 120 ---RVHICFAKSEA 130 (806)
Q Consensus 120 ---rIrVefAKs~~ 130 (806)
.-.|+||--.+
T Consensus 86 ~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 86 NEYPAVVEFAPYQK 99 (176)
T ss_dssp -EEEEEEEE-SS--
T ss_pred CCcceeEEEcchhc
Confidence 24677775533
No 138
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=80.27 E-value=7.6 Score=34.07 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=46.0
Q ss_pred CCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 65 LKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 65 ~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
..++-++|+..+..|+ ..+|.. ++.==||.|.+.++|+++.+..+|..+.+.+|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~-~~~I~~--d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR-WDRIRD--DRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCC-cceEEe--cCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4588999999999998 444443 5544589999999999999999999998877765
No 139
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=79.21 E-value=0.18 Score=61.21 Aligned_cols=62 Identities=27% Similarity=0.338 Sum_probs=52.0
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEe--C--C--CCEEEEEeCCHHHHHHHHHHhCCCeeC
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVF--P--G--RSYAFVQFRSIISACRAKETLQGKLFG 117 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~--~--d--KGyAFVeF~s~EdAekAleaLnG~~I~ 117 (806)
.++||.||+ ..+.+.+|...|..+|.|..+.+. . + ||+|||+|...++|.+|+....+..++
T Consensus 668 ~~~fvsnl~-~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLS-PKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcc-hhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 467999999 899999999999999987766543 1 1 899999999999999999876666554
No 140
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=77.04 E-value=1.3 Score=53.19 Aligned_cols=73 Identities=16% Similarity=0.076 Sum_probs=59.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeE-EEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEK-ITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~-VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
-+.+|||..|+ ..+++.++.++|..--.|++ |.|-+. ++-|||.|...+++..|...-+..-++.+.|+|.-.
T Consensus 433 ag~~lyv~~lP-~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLP-VMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCC-ccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 46899999999 88999999999998888887 555433 679999999999999988766666677777888754
No 141
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=75.67 E-value=12 Score=43.17 Aligned_cols=41 Identities=29% Similarity=0.494 Sum_probs=32.3
Q ss_pred CCCCCCCcEEEEecCCCCC-CCHHHHHHhhcCC----CCeeEEEEeC
Q 037075 48 DKNAEPSEVLWIGFPALLK-VDEVILRKAFSPF----GEIEKITVFP 89 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~-vTEedLrelFs~F----GeI~~VrI~~ 89 (806)
..+..+++.|-|-|+. ++ +...+|..+|+.| |.|.+|.|.+
T Consensus 140 pe~G~~tkrLAvVnmD-Wd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 140 PEEGNPTKRLAVVNMD-WDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred cCCCCcccceeEeecc-cccchHHHHHHHHHhhCCCCCccceeEech
Confidence 3346789999999998 65 8889999988876 6888887653
No 142
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=75.43 E-value=1.6 Score=52.19 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=61.1
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
.++.-++||||+. ..+..+-++.+...||-|..++... |||..|.....+.+|+..|+-..++|..+.+.-
T Consensus 37 ~~~~~~vfv~~~~-~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNIS-YLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchh-hhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3567789999998 8899999999999999998887643 999999999999999999999999888765433
No 143
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=74.51 E-value=3.4 Score=47.01 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=59.2
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeE---EEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEK---ITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~---VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
..+|-+.+|+ +..+.++|-.+|..|-.-++ |.|+.+ .|=|||+|.+.|+|..|....+.+....+-|.|--
T Consensus 280 kdcvRLRGLP-y~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLP-YEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCC-hhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 5688899999 99999999999998864322 454433 57899999999999999999998888888888766
Q ss_pred ec
Q 037075 126 AK 127 (806)
Q Consensus 126 AK 127 (806)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 54
No 144
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=71.56 E-value=7.9 Score=44.93 Aligned_cols=67 Identities=24% Similarity=0.281 Sum_probs=57.7
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCC-CCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPF-GEIEKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGN 118 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~F-GeI~~VrI~~d----KGyAFVeF~s~EdAekAleaLnG~~I~G 118 (806)
..+++.|+|-.+| ..++-.||..+...| -.|.+|+|+++ +=...|.|.+.++|..-++.+||+.|+.
T Consensus 71 ~~~~~mLcilaVP-~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVP-AYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEecc-ccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3448999999999 899999999988876 57889999886 3368999999999999999999998754
No 145
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=68.26 E-value=32 Score=41.66 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=54.5
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCee-----EEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIE-----KITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~-----~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
..+|||.---...++..+|-.+++.-+.|. .|+|+ ..|.||+-.. +.|...++.|++..+.|+.|.|+.++.
T Consensus 486 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred CEEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 345666432223589999988888776554 45553 5699999875 568899999999999999999998864
Q ss_pred C
Q 037075 129 E 129 (806)
Q Consensus 129 ~ 129 (806)
.
T Consensus 563 ~ 563 (629)
T PRK11634 563 A 563 (629)
T ss_pred C
Confidence 3
No 146
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=67.28 E-value=14 Score=42.42 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=41.9
Q ss_pred EEEEecCCCCCCCHHHHHHhhcCC----CCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHH
Q 037075 56 VLWIGFPALLKVDEVILRKAFSPF----GEIEKITVFPG-----RSYAFVQFRSIISACRAKET 110 (806)
Q Consensus 56 tLfVGNLp~~~vTEedLrelFs~F----GeI~~VrI~~d-----KGyAFVeF~s~EdAekAlea 110 (806)
.|-+.+|+ +++++.++.++|.+- |..+.|.++.. .|=|||.|...++|..|+..
T Consensus 163 ivRmRGLP-fdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 163 IVRMRGLP-FDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EEEecCCC-CCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 45567899 999999999999632 34455554432 57899999999999999864
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=65.02 E-value=8.1 Score=45.73 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=33.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHhCCCee---CC-CeEEEEeecCCCC
Q 037075 91 RSYAFVQFRSIISACRAKETLQGKLF---GN-PRVHICFAKSEAG 131 (806)
Q Consensus 91 KGyAFVeF~s~EdAekAleaLnG~~I---~G-rrIrVefAKs~~~ 131 (806)
.|||||.|.+.+++..+.++.||+.. ++ +...|.||+-++.
T Consensus 431 vGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk 475 (549)
T KOG4660|consen 431 VGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGK 475 (549)
T ss_pred cceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhch
Confidence 68999999999999999999999954 43 4468888876544
No 148
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=58.94 E-value=25 Score=37.36 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=48.5
Q ss_pred eEEEEecCC--CCchhhHHHHHHHHHhccceeEeecCCCc-----eEEEeCCCccccceeccCCCccEEEEEeecCC
Q 037075 431 WVVFFVPGS--DGDIGFYNEFMHYLEEKQRAAVAKLDDKT-----TLFLVPPSEFSEKVLKVPGKLSISGVVLRLEP 500 (806)
Q Consensus 431 ~v~~~~p~s--~~D~~~y~~f~~YL~~K~ragv~k~~~~~-----~lflvPps~~~~~~l~v~~~~~~~gvvl~~~~ 500 (806)
+..|++|+. ..+.+.|.-+++-|.+++++|||++--+. .+.|+|.-+. ...+|+-+-|+|..
T Consensus 110 ~s~~l~P~~~~~~s~~af~aL~~am~~~~kvai~r~v~r~~~~p~l~aL~P~~~~--------~~~gl~l~~LPfad 178 (272)
T cd00594 110 ESYYLVPDDSDKGSEKAFSALRRALLEKDKVAIARYVLRRNSRPRLVALRPQEEE--------DPEGLVLVTLPFAD 178 (272)
T ss_pred CcEEEEcCCCCcccHHHHHHHHHHHHHcCcEEEEEEEEcCCCCcEEEEEeccccC--------CCCEEEEEccCCch
Confidence 567889998 59999999999999999999999994322 3556666444 56778888787764
No 149
>TIGR02772 Ku_bact Ku protein, prokaryotic. Members of this protein family are Ku proteins of non-homologous end joining (NHEJ) DNA repair in bacteria and in at least one member of the archaea (Archaeoglobus fulgidus). Most members are encoded by a gene adjacent to the gene for the DNA ligase that completes the repair. The NHEJ system is broadly but rather sparsely distributed, being present in about one fifth of the first 250 completed prokarytotic genomes. A few species (e.g. Archaeoglobus fulgidus and Bradyrhizobium japonicum) have multiple copies that appear to represent recent paralogous family expansion.
Probab=56.86 E-value=33 Score=37.25 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=55.5
Q ss_pred CceeccccccchhHHHHHhhccCCceEEEEecCCCCchhhHHHHHHHHHhccceeEeecCC--CceEEEeCCCcccccee
Q 037075 406 PEFLDCTARTGLDMLAKHYYQASGSWVVFFVPGSDGDIGFYNEFMHYLEEKQRAAVAKLDD--KTTLFLVPPSEFSEKVL 483 (806)
Q Consensus 406 P~~ld~t~Rt~l~~l~~~~~~a~~~~v~~~~p~s~~D~~~y~~f~~YL~~K~ragv~k~~~--~~~lflvPps~~~~~~l 483 (806)
...||+-.=++.+-|.-+|... -.|+.|+ ..-.+.|.-+++=|..++++||+++-- +..|.+|=|++
T Consensus 87 ~~~i~I~gFv~~~~i~~~y~~~----syyl~P~-~~~~~a~~~L~~Al~~~~kvaIar~v~r~r~~l~aL~P~~------ 155 (258)
T TIGR02772 87 TKTIEIEAFVDADEIDPIYFDT----PYYLAPD-KGGEKAYALLREALEDTGKVGIAKVVLRGRERLAALRPVG------ 155 (258)
T ss_pred CCeEEEEEEeCHHHCChheeCC----CEEEccC-CCchHHHHHHHHHHHHcCCEEEEEEEEcCCcEEEEEEECC------
Confidence 3455555555555555566543 3889998 677889999999999999999999942 22455444443
Q ss_pred ccCCCccEEEEEeecCCC
Q 037075 484 KVPGKLSISGVVLRLEPP 501 (806)
Q Consensus 484 ~v~~~~~~~gvvl~~~~~ 501 (806)
+.|+.+.|+|+.-
T Consensus 156 -----~gL~l~~LpfadE 168 (258)
T TIGR02772 156 -----KGLVLTTLRYPDE 168 (258)
T ss_pred -----CeEEEEECCChhh
Confidence 2888888888743
No 150
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=51.98 E-value=7.5 Score=42.66 Aligned_cols=75 Identities=13% Similarity=0.031 Sum_probs=59.1
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFP------GRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~------dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
..++|+|++. ..+.+.+...+|..+|.+..+.+.. .++++.|.|...+.+..|+.......+.++.+...+.+
T Consensus 88 ~~~~f~g~~s-~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 88 SSTFFVGELS-ENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred cccccccccc-cchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 5789999999 8888888889999999877665433 38999999999999999998666566677666655554
Q ss_pred CC
Q 037075 128 SE 129 (806)
Q Consensus 128 s~ 129 (806)
..
T Consensus 167 ~~ 168 (285)
T KOG4210|consen 167 RR 168 (285)
T ss_pred cc
Confidence 43
No 151
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=47.94 E-value=14 Score=38.49 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=55.0
Q ss_pred cEEEEecCCCCCCCHHH----HHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCC-eEEEEeecCC
Q 037075 55 EVLWIGFPALLKVDEVI----LRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNP-RVHICFAKSE 129 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEed----LrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~Gr-rIrVefAKs~ 129 (806)
+++.++++.....++.+ ...+|-.|-+..-..+++..+.--|.|.+.+.|+.|...++++.|.|+ .++.-|+...
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 34667777622233333 345666666666566666777888999999999999999999999998 7888888653
No 152
>cd00789 KU_like Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.
Probab=45.08 E-value=65 Score=34.96 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=57.0
Q ss_pred CceeccccccchhHHHHHhhccCCceEEEEecCCCCchhhHHHHHHHHHhccceeEeecC---CCceEEEeCCCccccce
Q 037075 406 PEFLDCTARTGLDMLAKHYYQASGSWVVFFVPGSDGDIGFYNEFMHYLEEKQRAAVAKLD---DKTTLFLVPPSEFSEKV 482 (806)
Q Consensus 406 P~~ld~t~Rt~l~~l~~~~~~a~~~~v~~~~p~s~~D~~~y~~f~~YL~~K~ragv~k~~---~~~~lflvPps~~~~~~ 482 (806)
...||+-.=++.+.|..+|+..+ .|+.|+. ...+.|.-+++=|...+++||+++- ......|+|.-
T Consensus 86 ~~~i~IlgFv~~~~I~~~y~~~s----yyl~P~~-~~~kaf~~L~~Al~~~~kvaIar~V~r~~~~l~aL~P~~------ 154 (256)
T cd00789 86 TRTIEIVDFVPLDEIDPIYFDKP----YYLAPDK-GGEKAYALLREALRDTGKVAIAKVVLRTRERLAALRPRG------ 154 (256)
T ss_pred CCeEEEEeEeCHHHCCHhHcCCC----EEEecCC-CcchHHHHHHHHHHHcCCEEEEEEEEcCCceEEEEEECC------
Confidence 44555555555566656777533 7788988 6778999999999999999999993 22345555542
Q ss_pred eccCCCccEEEEEeecCCCC
Q 037075 483 LKVPGKLSISGVVLRLEPPG 502 (806)
Q Consensus 483 l~v~~~~~~~gvvl~~~~~~ 502 (806)
++|+-+.|+|+.-.
T Consensus 155 ------~gL~l~~Lpfaddv 168 (256)
T cd00789 155 ------KGLVLNTLRYPDEV 168 (256)
T ss_pred ------CEEEEEECCChhhc
Confidence 58888888887543
No 153
>PF02735 Ku: Ku70/Ku80 beta-barrel domain; InterPro: IPR006164 The Ku heterodimer is composed of Ku70 and Ku80 (or Ku86), 70 kDa and 80 kDa subunits of an ATP-dependent DNA helicase, which contributes to genomic integrity through its ability to bind DNA double-stranded breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-binding beta-barrel domain and is found in both the Ku70 and Ku80 proteins. Ku makes only a few contacts with the sugar-phosphate backbone, and none with the DNA bases, but it fits sterically to major and minor groove contours forming a ring that encircles duplex DNA, cradling two full turns of the DNA molecule. By forming a bridge between the broken DNA ends, Ku acts to structurally support and align the DNA ends, to protect them from degradation, and to prevent promiscuous binding to unbroken DNA. Ku effectively aligns the DNA, while still allowing access of polymerases, nucleases and ligases to the broken DNA ends to promote end joining [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0006303 double-strand break repair via nonhomologous end joining; PDB: 1JEY_B 1JEQ_B.
Probab=42.79 E-value=46 Score=33.99 Aligned_cols=63 Identities=19% Similarity=0.275 Sum_probs=44.3
Q ss_pred EEEEecCCCCc---hhhHHHHHHHHHhccceeEeecCCCc-----eEEEeCCCccccceeccCCCccEEEEEeecCC
Q 037075 432 VVFFVPGSDGD---IGFYNEFMHYLEEKQRAAVAKLDDKT-----TLFLVPPSEFSEKVLKVPGKLSISGVVLRLEP 500 (806)
Q Consensus 432 v~~~~p~s~~D---~~~y~~f~~YL~~K~ragv~k~~~~~-----~lflvPps~~~~~~l~v~~~~~~~gvvl~~~~ 500 (806)
-.|++|+-... ...|.-|++=|.+++++|||++--+. .+.|+|--+.. ..+.+|+.+.|+|..
T Consensus 105 ~~~i~p~~~~~~~s~~~f~aL~~am~~~~~vaI~r~v~r~~~~p~l~aL~P~~~~~------~~~~gl~~~~Lpf~d 175 (200)
T PF02735_consen 105 SYFIVPDEKSGEGSAKAFSALVQAMLEKNKVAIARYVLRSNSRPRLVALIPQIEES------DTPEGLVLIRLPFAD 175 (200)
T ss_dssp EEEEEEETTTECCHHHHHHHHHHHHHHCTEEEEEEEESSTTS--EEEEEEEEE-CE------EC-CEEEEEE---GG
T ss_pred cEEEEECCCCcchhHHHHHHHHHHHHhcCcEEEEEEEEcCCCCcEEEEEEEecccc------CCCCeEEEEEcCChh
Confidence 45778877766 78999999999999999999995333 46677765554 334788888888874
No 154
>KOG1634 consensus Predicted transcription factor DATF1, contains PHD and TFS2M domains [Transcription]
Probab=41.51 E-value=32 Score=42.69 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=66.7
Q ss_pred CCCcceeeeccCCCceeeeEEeec--ccccCcCCCceeccccccchhHHHHHhh---ccC--CceEEEEecCCCCchhhH
Q 037075 374 KEWKWEGTIAKGGTPVCRARCFPV--GKVMDMMLPEFLDCTARTGLDMLAKHYY---QAS--GSWVVFFVPGSDGDIGFY 446 (806)
Q Consensus 374 ~~~~W~GtIAKgGtpvCrarC~pv--gk~~~~~~P~~ld~t~Rt~l~~l~~~~~---~a~--~~~v~~~~p~s~~D~~~y 446 (806)
.+ -|.|+|+=.=.-.-.|...+. .|.....||.++++..|-.+..+-+.+- ++. .+-++++.+.+.--...+
T Consensus 546 ~~-~w~G~l~l~~s~~~~~v~i~~~~~~~~~~~~p~~~ei~gri~~s~~ge~i~el~kS~ske~~~~~~~~~s~~~s~~~ 624 (778)
T KOG1634|consen 546 SE-LWKGNLQLNLSNDVSAVGIFPSGEKAAGRLWPATYEIKGRIRLSKVGEYIPELPKSPSKEHMVERIEPTSRIKSDEF 624 (778)
T ss_pred cc-cccccccccccCccceeeccccchhhhcccCceeeeeecceeecchhhhhhhcccCccccceEEEeecccccccccc
Confidence 35 899988733222223333333 4566789999999999999998766433 222 346677888887788889
Q ss_pred HHHHHHHHhccceeEeecCC
Q 037075 447 NEFMHYLEEKQRAAVAKLDD 466 (806)
Q Consensus 447 ~~f~~YL~~K~ragv~k~~~ 466 (806)
+-|..|+-..+|++|+-...
T Consensus 625 ~~~~~~~d~~~~~~~~~~~~ 644 (778)
T KOG1634|consen 625 DLFAEVFDKRQRLGVLGSVQ 644 (778)
T ss_pred chhhhhhhhhhhhccccccc
Confidence 99999999999999987764
No 155
>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen. This is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain, that also occurs in bacterial hypothetical proteins.
Probab=40.83 E-value=81 Score=30.85 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=53.9
Q ss_pred eccccccchhHHHHHhhccCCceEEEEecCCCC---chhhHHHHHHHHHhccceeEeecCC-----CceEEEeCCCcccc
Q 037075 409 LDCTARTGLDMLAKHYYQASGSWVVFFVPGSDG---DIGFYNEFMHYLEEKQRAAVAKLDD-----KTTLFLVPPSEFSE 480 (806)
Q Consensus 409 ld~t~Rt~l~~l~~~~~~a~~~~v~~~~p~s~~---D~~~y~~f~~YL~~K~ragv~k~~~-----~~~lflvPps~~~~ 480 (806)
|++-.=+..+.|.-+|.-. ...|++|+-.. ..+.|.-+++=|.+++++||+++-- ....-|+|.-+..
T Consensus 38 l~ilgF~~~~~i~~~~~~~---~s~~i~P~~~~~~~s~~a~~aL~~am~~~~~~aiar~v~r~~~~p~l~aL~P~~~~~- 113 (140)
T smart00559 38 LELLGFKPLSSLPPYYFLR---PSYFLVPDDKSVIGSTKAFSALVEALLETDKIAIARYTLRTKSNPRLVALRPYDEED- 113 (140)
T ss_pred EEEEeecChHHCCHhHccC---CcEEEeeCCcccchhHHHHHHHHHHHHhcCCEEEEEEEEcCCCCCEEEEEEeeeccc-
Confidence 3333333344454455432 45577788754 7899999999999999999999932 2345566654322
Q ss_pred ceeccCCCccEEEEEeecCC
Q 037075 481 KVLKVPGKLSISGVVLRLEP 500 (806)
Q Consensus 481 ~~l~v~~~~~~~gvvl~~~~ 500 (806)
..++|+.+-|+|..
T Consensus 114 ------~~~~l~~~~Lpfae 127 (140)
T smart00559 114 ------DGEGLVLVQLPFAD 127 (140)
T ss_pred ------CCCcEEEEecCCch
Confidence 13589988888874
No 156
>cd00788 KU70 Ku-core domain, Ku70 subfamily; Ku70 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in the nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity.
Probab=40.67 E-value=74 Score=34.65 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=44.2
Q ss_pred EEEEecCCC---CchhhHHHHHHHHHhccceeEeecCCC-----ceEEEeCCCccccceeccCCCccEEEEEeecCC
Q 037075 432 VVFFVPGSD---GDIGFYNEFMHYLEEKQRAAVAKLDDK-----TTLFLVPPSEFSEKVLKVPGKLSISGVVLRLEP 500 (806)
Q Consensus 432 v~~~~p~s~---~D~~~y~~f~~YL~~K~ragv~k~~~~-----~~lflvPps~~~~~~l~v~~~~~~~gvvl~~~~ 500 (806)
-.|++|+.. ...+.|.-|++-|.+++++||+++--+ .-+.|+|.-+.....-..--...|+-+.|+|..
T Consensus 117 s~fl~P~~~~~~gs~~af~aL~~am~~~~kvaIa~~v~r~~~~p~l~aL~P~~~~~~~~~~~~~~~gl~l~~LPfad 193 (287)
T cd00788 117 SYFIYPDESDYKGSTRLFAALLRSCLKKNKVAICWYILRKNSPPRLVALVPQEEELDEPDGQVLPPGFHLVPLPFAD 193 (287)
T ss_pred ceeEecCcccccCcHHHHHHHHHHHHhcCcEEEEEEEecCCCCCEEEEEeccccccCCCCCccCCCcEEEEecCchh
Confidence 567888873 678899999999999999999999422 235556643322111000013567777776663
No 157
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=39.25 E-value=1.2e+02 Score=38.95 Aligned_cols=13 Identities=8% Similarity=0.084 Sum_probs=5.7
Q ss_pred EEeCCHHHHHHHH
Q 037075 96 VQFRSIISACRAK 108 (806)
Q Consensus 96 VeF~s~EdAekAl 108 (806)
|.|.-.-+|.++|
T Consensus 1086 IklqIshEaAAcI 1098 (1282)
T KOG0921|consen 1086 IKLQISHEAAACI 1098 (1282)
T ss_pred eeEeccHHHHHHH
Confidence 3444444444444
No 158
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=35.04 E-value=1.7e+02 Score=39.10 Aligned_cols=11 Identities=45% Similarity=0.534 Sum_probs=8.0
Q ss_pred HHHHHHHHHHh
Q 037075 792 LAAALLQQIQR 802 (806)
Q Consensus 792 ~~~~~~~~~~~ 802 (806)
--|||..|+|+
T Consensus 2190 qtaalVRQlQ~ 2200 (2220)
T KOG3598|consen 2190 QTAALVRQLQM 2200 (2220)
T ss_pred HHHHHHHHHHH
Confidence 45778888875
No 159
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=30.91 E-value=11 Score=43.16 Aligned_cols=73 Identities=14% Similarity=-0.013 Sum_probs=55.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG--RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d--KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
..|++|++|. ..+...++.++|..+|+|....+-.+ ..||-|+|......+.|+. ++|..+.-...++..-++
T Consensus 151 rRt~~v~sl~-~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 151 RRTREVQSLI-SAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred Hhhhhhhcch-hhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 3689999999 78999999999999999987665443 6788899999999999986 577766543333333333
No 160
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=30.10 E-value=46 Score=39.23 Aligned_cols=66 Identities=14% Similarity=0.027 Sum_probs=46.2
Q ss_pred ecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 60 GFPALLKVDEVILRKAFSPFGEIEKITVFPG-RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 60 GNLp~~~vTEedLrelFs~FGeI~~VrI~~d-KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
.+.+.....+.-....|+.||.+++..+++. .+|--|.+. +.|.+++..++...|.-. |.+-|...
T Consensus 202 rtgp~ks~~s~~r~k~fee~g~~~r~el~p~~hg~~~vv~~--enan~~m~s~da~ei~~~-l~~~~ynp 268 (526)
T KOG2135|consen 202 RTGPEKSRNSENRRKFFEEFGVLERGELCPTHHGCVPVVSK--ENANKTMKSEDAAEIMKT-LPPPGYNP 268 (526)
T ss_pred ccCcccccccHHhhhhhHhhceeeeccccccccccceeEee--ccccccccCCcchhhhhc-CCCCCcCC
Confidence 4444255788889999999999988777664 667777776 788888877766665444 55544443
No 161
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=27.47 E-value=23 Score=39.13 Aligned_cols=62 Identities=32% Similarity=0.500 Sum_probs=42.2
Q ss_pred CCHHHHHHhhcCCCCeeEEEEeCC----------------CCE---------EEEEeCCHHHHHHHHHHhCCCee----C
Q 037075 67 VDEVILRKAFSPFGEIEKITVFPG----------------RSY---------AFVQFRSIISACRAKETLQGKLF----G 117 (806)
Q Consensus 67 vTEedLrelFs~FGeI~~VrI~~d----------------KGy---------AFVeF~s~EdAekAleaLnG~~I----~ 117 (806)
-+|+-|+..|..||+|..|.|..- +|| |||+|..-..-..|+.+|.|..+ +
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d 252 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGD 252 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcC
Confidence 467889999999999998876421 233 45777766677778888888753 2
Q ss_pred CC----eEEEEeecC
Q 037075 118 NP----RVHICFAKS 128 (806)
Q Consensus 118 Gr----rIrVefAKs 128 (806)
|. .++|+|.++
T Consensus 253 ~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 253 DGFFQANVKVDFDRS 267 (445)
T ss_pred Ccccccccccccchh
Confidence 22 356666554
No 162
>PF13546 DDE_5: DDE superfamily endonuclease
Probab=26.25 E-value=2e+02 Score=30.59 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=75.1
Q ss_pred CCCcceeeec--cCCCceeeeEEeecccccC------cCCC--ce------------eccccccchhHHHHHhhccC---
Q 037075 374 KEWKWEGTIA--KGGTPVCRARCFPVGKVMD------MMLP--EF------------LDCTARTGLDMLAKHYYQAS--- 428 (806)
Q Consensus 374 ~~~~W~GtIA--KgGtpvCrarC~pvgk~~~------~~~P--~~------------ld~t~Rt~l~~l~~~~~~a~--- 428 (806)
-.+.|.|..- |.+..++.+-|..+..... +.+| -. -+...+|-+++.......+.
T Consensus 104 v~r~~~~~~g~~k~~~~~~~v~l~~~~~~~~~~l~~~L~~p~~w~~~~~~~~~~~~~~~~~~~tk~~la~~~i~~a~~~g 183 (273)
T PF13546_consen 104 VGRQYDHSAGRGKSGNCQVGVHLSYVDGGGSCPLDFRLYLPKSWTEDKERRNRAGIPEEQEFRTKPELALEMIDRARQAG 183 (273)
T ss_pred ccccccCccccccccccceEEEEEeccCCcccchhhhhhccccccchhhhhhccccccccccccHHHHHHHHHHHHHhcc
Confidence 4678999888 9999988888877755332 2333 01 12344555555444444332
Q ss_pred -CceEEEEecCCCCchhhHHHHHHHHHhccceeEeecCCCceEEEeCCCccccceeccCCCccEEEEEe
Q 037075 429 -GSWVVFFVPGSDGDIGFYNEFMHYLEEKQRAAVAKLDDKTTLFLVPPSEFSEKVLKVPGKLSISGVVL 496 (806)
Q Consensus 429 -~~~v~~~~p~s~~D~~~y~~f~~YL~~K~ragv~k~~~~~~lflvPps~~~~~~l~v~~~~~~~gvvl 496 (806)
.+.+ ++.|+- +..-.+|+.-|...+-.-|+.+..++.||+.||..-.-+ .|.-+.||-.+
T Consensus 184 ~~~~~--vvaDs~--y~~~~~f~~~l~~~~~~~i~~vr~n~~~~~~~~~~~~~~----rGRPr~~g~~~ 244 (273)
T PF13546_consen 184 IPARW--VVADSW--YGSSPAFRKALRERGLHYIGRVRSNRKVYYPPPPPPPPK----RGRPRKYGRRI 244 (273)
T ss_pred cccce--EEeccc--cCChHHHHHHHHHCCceEEEeeccCCEEEcCCccccCCC----CCCCCCCCCcC
Confidence 2233 666654 335678999999988899999999999999998554433 66666666553
No 163
>cd07445 CRD_corin_1 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the first (N-terminal) CRD.
Probab=25.76 E-value=12 Score=36.96 Aligned_cols=22 Identities=32% Similarity=0.735 Sum_probs=17.7
Q ss_pred eEEeecccccCcCCCceecccc
Q 037075 392 ARCFPVGKVMDMMLPEFLDCTA 413 (806)
Q Consensus 392 arC~pvgk~~~~~~P~~ld~t~ 413 (806)
..|.+|=+...+.||+.|||.+
T Consensus 87 ~~C~~~m~~fg~~WPe~L~C~~ 108 (130)
T cd07445 87 EGCEPVLGMVNASWPDFLRCSQ 108 (130)
T ss_pred HHHHHHHHHhCCCCCCcCCccc
Confidence 3466676677999999999985
No 164
>cd00873 KU80 Ku-core domain, Ku80 subfamily; Ku80 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity.
Probab=24.06 E-value=1.9e+02 Score=31.82 Aligned_cols=82 Identities=20% Similarity=0.167 Sum_probs=52.9
Q ss_pred eeccccccchhHHHHHhhccCCceEEEEecCCC--CchhhHHHHHHHHHhccceeEeecCCC-----ceEEEeCCCcccc
Q 037075 408 FLDCTARTGLDMLAKHYYQASGSWVVFFVPGSD--GDIGFYNEFMHYLEEKQRAAVAKLDDK-----TTLFLVPPSEFSE 480 (806)
Q Consensus 408 ~ld~t~Rt~l~~l~~~~~~a~~~~v~~~~p~s~--~D~~~y~~f~~YL~~K~ragv~k~~~~-----~~lflvPps~~~~ 480 (806)
.|++-.=++.+.|.-+|.= + +..|++|+.. ...+.|.-+++=|.+++++||+++--+ ....|+| +....
T Consensus 98 ~l~ilgF~~~~~i~~~~~~--~-~s~~l~P~~~~~~~~~a~~aL~~am~~~~k~aI~r~v~r~~~~p~l~aL~P-~~~~~ 173 (300)
T cd00873 98 GLDILGFIKASNVPRYYLM--G-ESSYVVPQQDDEAAALAFSALVRALAELDKYAIARYVYKDNSEPQLGVLFP-RIKED 173 (300)
T ss_pred ceEEEeeccHHHCChhhee--C-CcEEEEcCCCChhHHHHHHHHHHHHHhCCCEEEEEEEEcCCCCcEEEEEec-cccCC
Confidence 3333333333444444441 1 5678888862 378999999999999999999999422 2344555 43221
Q ss_pred ceeccCCCccEEEEEeecCC
Q 037075 481 KVLKVPGKLSISGVVLRLEP 500 (806)
Q Consensus 481 ~~l~v~~~~~~~gvvl~~~~ 500 (806)
.++|+-+-|+|..
T Consensus 174 -------~~~l~l~~LPf~e 186 (300)
T cd00873 174 -------YECLVLVRLPFAE 186 (300)
T ss_pred -------CCEEEEEecCchh
Confidence 5688888888873
No 165
>cd07464 CRD_FZ2 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 2 (Fz2) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 2 (Fz2) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz2 is involved in the Wnt/beta-catenin signaling pathway and in the activation of protein kinase C and calcium/calmodulin-dependent protein kinase (CaM kinase).
Probab=23.29 E-value=11 Score=36.96 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=18.7
Q ss_pred eeEEeecccccCcCCCceecccc
Q 037075 391 RARCFPVGKVMDMMLPEFLDCTA 413 (806)
Q Consensus 391 rarC~pvgk~~~~~~P~~ld~t~ 413 (806)
|..|.++=+...+.||+.|||.+
T Consensus 84 r~~C~~~m~~fg~~WP~~l~C~~ 106 (127)
T cd07464 84 RQGCEALMNKFGFQWPERLRCEN 106 (127)
T ss_pred HHHHHHHHHHhCCCCCCcCCccc
Confidence 44567777778999999999976
No 166
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=23.12 E-value=1.4e+02 Score=32.43 Aligned_cols=63 Identities=24% Similarity=0.249 Sum_probs=50.4
Q ss_pred chhHHHHHhhc-cCCceEEEEecCCCCchhhHHHHHHHHHhccceeEeecCCCceEEEeCCCccccceeccCC
Q 037075 416 GLDMLAKHYYQ-ASGSWVVFFVPGSDGDIGFYNEFMHYLEEKQRAAVAKLDDKTTLFLVPPSEFSEKVLKVPG 487 (806)
Q Consensus 416 ~l~~l~~~~~~-a~~~~v~~~~p~s~~D~~~y~~f~~YL~~K~ragv~k~~~~~~lflvPps~~~~~~l~v~~ 487 (806)
.|-.|+|.+-+ ..-.+||+|.-..+. ..++.+||+.|--| +++..|.-|||..-+..+|-+.+
T Consensus 124 eLv~~akrlkk~~Vaidii~FGE~~~~-~e~l~~fida~N~~--------~~gshlv~Vppg~~L~d~l~ssP 187 (259)
T KOG2884|consen 124 ELVKLAKRLKKNKVAIDIINFGEAENN-TEKLFEFIDALNGK--------GDGSHLVSVPPGPLLSDALLSSP 187 (259)
T ss_pred HHHHHHHHHHhcCeeEEEEEecccccc-HHHHHHHHHHhcCC--------CCCceEEEeCCCccHHHHhhcCc
Confidence 67778888774 457799999865554 89999999999765 47889999999998888876654
No 167
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=22.77 E-value=1.1e+02 Score=26.32 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=19.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhcc
Q 037075 779 DADPQKRLQATLQLAAALLQQIQRGK 804 (806)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (806)
..+-.+-||+-+|+|+++.| ++.|+
T Consensus 30 ~~~~~~~lqglIq~A~a~~h-~~~gn 54 (62)
T PF03745_consen 30 PGPERDFLQGLIQLAVALYH-LRRGN 54 (62)
T ss_dssp -CCHHHHHHHHHHHHHHHHH-HHCTS
T ss_pred CcchHHHHHHHHHHHHHHHH-HHhCC
Confidence 34467789999999999998 66653
No 168
>cd07449 CRD_FZ3 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 3 (Fz3) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 3 (Fz3) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz3 plays a vital role in the anterior-posterior guidance of commissural axons. Knockout mice without Fz3 show defects in fiber tracts in the rostral CNS.
Probab=22.12 E-value=15 Score=36.12 Aligned_cols=22 Identities=18% Similarity=0.538 Sum_probs=17.6
Q ss_pred eEEeecccccCcCCCceecccc
Q 037075 392 ARCFPVGKVMDMMLPEFLDCTA 413 (806)
Q Consensus 392 arC~pvgk~~~~~~P~~ld~t~ 413 (806)
+.|.++=+..++.||+.|||.+
T Consensus 85 ~~C~~~m~~fg~~WP~~L~C~~ 106 (127)
T cd07449 85 SECSKLMEMFGVPWPEDMECSR 106 (127)
T ss_pred HHHHHHHHHhCCCCCCcCCccc
Confidence 3466666678999999999985
No 169
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=21.50 E-value=2.1e+02 Score=34.58 Aligned_cols=91 Identities=23% Similarity=0.243 Sum_probs=56.8
Q ss_pred CceeccccccchhHHHHHhhccCCceEEEEecCCC---CchhhHHHHHHHHHhccceeEeecCCC--c---eEEEeCCCc
Q 037075 406 PEFLDCTARTGLDMLAKHYYQASGSWVVFFVPGSD---GDIGFYNEFMHYLEEKQRAAVAKLDDK--T---TLFLVPPSE 477 (806)
Q Consensus 406 P~~ld~t~Rt~l~~l~~~~~~a~~~~v~~~~p~s~---~D~~~y~~f~~YL~~K~ragv~k~~~~--~---~lflvPps~ 477 (806)
+..|++--=++++.|..+|+-. ...|+.|+.. .-.+.|.-+++=|..++++||+++--+ . .+-|+ |++
T Consensus 318 ~~~l~ilGF~~~s~l~~~~~~~---~s~fi~Pde~~~~gs~~afsaL~~~l~~~~kvAI~~~v~r~~~~P~lvaL~-P~~ 393 (584)
T TIGR00578 318 PPGLQLMGFKPLSMLKKHHHLR---PSLFVYPEESLVRGSTTLFSALLQKCLEKEVAALCRYISRRNQPPYFVALV-PQE 393 (584)
T ss_pred CCceEEEeeccHHHCCchhhcC---CceEEecCCcccccHHHHHHHHHHHHHhcCcEEEEEEEecCCCCCEEEEEe-CCc
Confidence 3344444445555677777642 2378889875 356689999999999999999999332 2 34555 554
Q ss_pred cccceeccC-CCccEEEEEeecCC
Q 037075 478 FSEKVLKVP-GKLSISGVVLRLEP 500 (806)
Q Consensus 478 ~~~~~l~v~-~~~~~~gvvl~~~~ 500 (806)
....--++. -++.|+-+.|+|..
T Consensus 394 ~~~d~~~~q~~p~G~~l~~LPfad 417 (584)
T TIGR00578 394 EELDDQKIQVTPPGFHLVFLPFAD 417 (584)
T ss_pred ccccccCCccCCCeEEEEecCchh
Confidence 322111111 14577778787774
No 170
>cd07450 CRD_FZ6 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 6 (Fz6) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 6 (Fz6) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Frizzled 6 (Fz6) is expressed in the skin and hair follicles and controls hair patterning in mammals using a Fz-dependent tissue polarity system, which is similar to the one that patterns the Drosophila cuticle.
Probab=21.15 E-value=16 Score=35.98 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=17.5
Q ss_pred eEEeecccccCcCCCceecccc
Q 037075 392 ARCFPVGKVMDMMLPEFLDCTA 413 (806)
Q Consensus 392 arC~pvgk~~~~~~P~~ld~t~ 413 (806)
+.|.+|=+...+.||+.|||.+
T Consensus 85 ~~C~~~m~~fg~~WP~~L~C~~ 106 (127)
T cd07450 85 SDCKKLIDTFGISWPEELECDR 106 (127)
T ss_pred HHHHHHHHHhCCCCCCcCCccc
Confidence 3455666678999999999986
No 171
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=20.72 E-value=1.4e+02 Score=33.40 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=57.3
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCC-------------CEEEEEeCCHHHHHHHHHHh----CC-
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGR-------------SYAFVQFRSIISACRAKETL----QG- 113 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dK-------------GyAFVeF~s~EdAekAleaL----nG- 113 (806)
--++.|...|+. ..++--.+...|.+||.|+.|.++.+. ....+.|-+.+.+-.-...+ .-
T Consensus 13 YrTRSLLfeNv~-~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 13 YRTRSLLFENVN-NSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred ceeHHHHHhhcc-ccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 346778888998 788888888999999999999999865 67899999998876544322 11
Q ss_pred -CeeCCCeEEEEeec
Q 037075 114 -KLFGNPRVHICFAK 127 (806)
Q Consensus 114 -~~I~GrrIrVefAK 127 (806)
+.+....|+|.|..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 14566778887775
No 172
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=20.23 E-value=6.7 Score=45.20 Aligned_cols=76 Identities=14% Similarity=0.199 Sum_probs=63.9
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG---RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d---KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~ 130 (806)
++.+-|.|++ .....+.|..+...||.++.|..+.. ....-|+|.+.+.+..|+..|+|..+....++|.|-..+-
T Consensus 80 srk~Qirnip-pql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 80 SRKIQIRNIP-PQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred hhhhhHhcCC-HHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhh
Confidence 5668899999 88999999999999999998875432 3344588999999999999999999999999998875543
Done!