Query 037075
Match_columns 806
No_of_seqs 322 out of 1944
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 14:03:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cq1_A PTB-like protein L; RRM 99.7 1.5E-16 5E-21 143.6 12.5 84 48-132 9-94 (101)
2 1why_A Hypothetical protein ri 99.7 1.3E-16 4.3E-21 139.7 11.6 83 48-131 11-95 (97)
3 1wex_A Hypothetical protein (r 99.7 1.7E-16 5.9E-21 143.6 12.8 83 48-131 9-93 (104)
4 3r27_A HnRNP L, heterogeneous 99.7 1E-16 3.5E-21 145.6 10.8 81 49-130 16-98 (100)
5 1x4d_A Matrin 3; structural ge 99.7 1.2E-16 4.2E-21 144.8 10.7 80 51-131 12-94 (102)
6 2cpj_A Non-POU domain-containi 99.7 2.7E-16 9.2E-21 138.1 12.3 84 48-132 9-92 (99)
7 4fxv_A ELAV-like protein 1; RN 99.7 1.1E-16 3.7E-21 142.7 9.7 75 53-128 18-98 (99)
8 1sjq_A Polypyrimidine tract-bi 99.7 1E-16 3.4E-21 146.7 8.9 84 48-132 10-95 (105)
9 2dnz_A Probable RNA-binding pr 99.7 5.9E-16 2E-20 134.2 13.0 80 52-132 3-88 (95)
10 1x4a_A Splicing factor, argini 99.7 6.3E-16 2.1E-20 138.0 13.1 83 49-132 17-102 (109)
11 2dnq_A RNA-binding protein 4B; 99.7 6.3E-16 2.2E-20 133.6 12.4 79 51-132 5-83 (90)
12 1whw_A Hypothetical protein ri 99.7 7E-16 2.4E-20 135.0 12.6 81 51-132 5-91 (99)
13 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.6E-16 1.2E-20 148.1 11.2 83 49-132 34-122 (156)
14 2cq3_A RNA-binding protein 9; 99.6 1.4E-15 4.9E-20 134.1 14.1 82 50-132 11-96 (103)
15 2ytc_A PRE-mRNA-splicing facto 99.6 3.1E-16 1.1E-20 133.3 9.3 77 50-127 8-85 (85)
16 2ad9_A Polypyrimidine tract-bi 99.6 3.5E-16 1.2E-20 145.9 10.4 84 48-132 25-110 (119)
17 2cph_A RNA binding motif prote 99.6 8.2E-16 2.8E-20 136.1 12.2 82 50-132 11-100 (107)
18 2cq0_A Eukaryotic translation 99.6 6.3E-16 2.2E-20 136.4 11.4 83 49-132 10-98 (103)
19 3ex7_B RNA-binding protein 8A; 99.6 4.1E-16 1.4E-20 142.3 10.5 82 50-132 18-105 (126)
20 1x4f_A Matrin 3; structural ge 99.6 4.5E-16 1.5E-20 143.8 10.8 84 48-132 19-105 (112)
21 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.2E-15 3.9E-20 134.8 12.8 82 50-132 11-96 (103)
22 2d9p_A Polyadenylate-binding p 99.6 8.7E-16 3E-20 135.6 11.9 81 51-132 12-96 (103)
23 2cqb_A Peptidyl-prolyl CIS-tra 99.6 6.2E-16 2.1E-20 136.0 10.9 83 49-132 7-95 (102)
24 2dgt_A RNA-binding protein 30; 99.6 1.3E-15 4.3E-20 132.2 12.6 81 49-132 5-85 (92)
25 1x5s_A Cold-inducible RNA-bind 99.6 8.7E-16 3E-20 135.1 11.7 83 49-132 7-95 (102)
26 2dnh_A Bruno-like 5, RNA bindi 99.6 1E-15 3.6E-20 135.2 12.2 81 51-132 12-100 (105)
27 1x4g_A Nucleolysin TIAR; struc 99.6 7.9E-16 2.7E-20 137.6 11.6 81 51-132 22-102 (109)
28 2dgx_A KIAA0430 protein; RRM d 99.6 7.3E-16 2.5E-20 135.4 11.1 80 51-131 6-92 (96)
29 2dgo_A Cytotoxic granule-assoc 99.6 1.5E-15 5.3E-20 136.5 13.5 84 48-132 9-98 (115)
30 2dgu_A Heterogeneous nuclear r 99.6 1.2E-15 4E-20 135.2 12.5 79 51-132 8-86 (103)
31 1x5t_A Splicing factor 3B subu 99.6 5.5E-16 1.9E-20 134.7 10.2 80 52-132 3-89 (96)
32 2dnm_A SRP46 splicing factor; 99.6 7.9E-16 2.7E-20 135.8 11.2 83 49-132 8-96 (103)
33 3s8s_A Histone-lysine N-methyl 99.6 6.8E-16 2.3E-20 140.4 10.7 78 51-129 3-86 (110)
34 2dgs_A DAZ-associated protein 99.6 2.1E-15 7.1E-20 132.2 13.4 81 50-132 6-92 (99)
35 2la4_A Nuclear and cytoplasmic 99.6 4.8E-16 1.6E-20 136.7 9.3 77 51-128 24-100 (101)
36 2kvi_A Nuclear polyadenylated 99.6 6.6E-16 2.3E-20 135.4 10.0 81 50-133 6-87 (96)
37 4f25_A Polyadenylate-binding p 99.6 5.3E-16 1.8E-20 140.9 9.7 78 53-131 4-85 (115)
38 2x1f_A MRNA 3'-END-processing 99.6 8.7E-16 3E-20 134.2 10.5 78 53-131 1-84 (96)
39 1p27_B RNA-binding protein 8A; 99.6 7.2E-16 2.5E-20 136.5 10.0 79 51-130 20-104 (106)
40 3bs9_A Nucleolysin TIA-1 isofo 99.6 7.4E-16 2.5E-20 131.3 9.7 77 52-129 4-86 (87)
41 1x5u_A Splicing factor 3B subu 99.6 1.4E-15 4.9E-20 134.3 11.8 82 50-132 11-98 (105)
42 2fy1_A RNA-binding motif prote 99.6 2E-15 6.8E-20 137.7 13.1 81 51-132 4-89 (116)
43 2e5h_A Zinc finger CCHC-type a 99.6 1.1E-15 3.9E-20 132.2 10.8 79 48-127 10-94 (94)
44 2do4_A Squamous cell carcinoma 99.6 2E-15 6.8E-20 132.6 12.4 82 49-131 12-98 (100)
45 3mdf_A Peptidyl-prolyl CIS-tra 99.6 9.3E-16 3.2E-20 130.1 9.9 76 51-127 4-85 (85)
46 3md1_A Nuclear and cytoplasmic 99.6 1.2E-15 4.1E-20 128.9 10.4 76 54-130 1-82 (83)
47 2cqc_A Arginine/serine-rich sp 99.6 9.1E-16 3.1E-20 132.8 9.5 80 48-128 9-94 (95)
48 2cpf_A RNA binding motif prote 99.6 1.2E-15 4E-20 133.4 10.0 80 52-132 3-91 (98)
49 1u6f_A Tcubp1, RNA-binding pro 99.6 1.4E-15 4.7E-20 141.1 11.1 83 49-132 37-125 (139)
50 2do0_A HnRNP M, heterogeneous 99.6 3.9E-15 1.3E-19 133.4 13.6 81 50-131 11-96 (114)
51 1x4h_A RNA-binding protein 28; 99.6 2.6E-15 9E-20 133.6 12.4 83 49-132 10-104 (111)
52 2dgv_A HnRNP M, heterogeneous 99.6 1.2E-15 4.2E-20 131.5 9.9 81 51-132 5-89 (92)
53 1x4c_A Splicing factor, argini 99.6 4E-15 1.4E-19 133.3 13.4 78 52-131 13-95 (108)
54 2cpd_A Apobec-1 stimulating pr 99.6 4.3E-15 1.5E-19 130.4 13.1 80 49-131 10-91 (99)
55 3ulh_A THO complex subunit 4; 99.6 1.7E-15 5.8E-20 134.3 10.6 79 49-128 24-107 (107)
56 2dgp_A Bruno-like 4, RNA bindi 99.6 2.2E-15 7.4E-20 133.4 11.1 82 50-132 9-99 (106)
57 2dnp_A RNA-binding protein 14; 99.6 2.3E-15 8E-20 130.0 10.9 79 50-131 5-83 (90)
58 2hvz_A Splicing factor, argini 99.6 1.8E-15 6.3E-20 133.0 10.4 77 55-132 1-78 (101)
59 2cpz_A CUG triplet repeat RNA- 99.6 2.7E-15 9.4E-20 135.1 11.5 84 48-132 19-108 (115)
60 1x5p_A Negative elongation fac 99.6 5.8E-15 2E-19 129.4 13.2 80 50-132 11-90 (97)
61 2cqh_A IGF-II mRNA-binding pro 99.6 1.1E-15 3.6E-20 132.6 8.4 80 51-132 5-86 (93)
62 2ywk_A Putative RNA-binding pr 99.6 1.3E-15 4.6E-20 132.0 9.0 79 49-128 11-94 (95)
63 2lxi_A RNA-binding protein 10; 99.6 4.4E-16 1.5E-20 136.4 5.6 77 54-131 1-85 (91)
64 2cpe_A RNA-binding protein EWS 99.6 3.7E-15 1.3E-19 133.6 11.6 82 50-132 11-106 (113)
65 2xnq_A Nuclear polyadenylated 99.6 3.8E-15 1.3E-19 131.7 11.4 79 49-130 17-96 (97)
66 1wi8_A EIF-4B, eukaryotic tran 99.6 4.4E-15 1.5E-19 131.5 11.9 79 51-132 12-97 (104)
67 4a8x_A RNA-binding protein wit 99.6 3.3E-15 1.1E-19 127.2 10.6 77 53-130 3-86 (88)
68 2wbr_A GW182, gawky, LD47780P; 99.6 2.1E-15 7.1E-20 134.8 9.6 75 52-127 5-79 (89)
69 1oo0_B CG8781-PA, drosophila Y 99.6 3E-15 1E-19 133.6 10.6 79 51-130 23-107 (110)
70 2div_A TRNA selenocysteine ass 99.6 2E-15 6.9E-20 132.1 9.3 81 50-131 5-96 (99)
71 1whx_A Hypothetical protein ri 99.6 1.9E-15 6.6E-20 136.8 9.4 76 54-130 10-85 (111)
72 2cqd_A RNA-binding region cont 99.6 7E-15 2.4E-19 132.6 13.0 82 49-132 12-99 (116)
73 2err_A Ataxin-2-binding protei 99.6 2.6E-15 9E-20 135.1 10.1 80 49-129 24-107 (109)
74 2jvo_A Nucleolar protein 3; nu 99.6 3E-15 1E-19 135.1 10.5 80 49-131 26-105 (108)
75 1wf1_A RNA-binding protein RAL 99.6 3.7E-15 1.3E-19 133.4 10.9 78 51-131 24-102 (110)
76 2khc_A Testis-specific RNP-typ 99.6 5.1E-15 1.7E-19 133.6 11.8 79 48-127 34-118 (118)
77 2lkz_A RNA-binding protein 5; 99.6 1.9E-15 6.5E-20 134.7 8.8 77 51-128 6-94 (95)
78 2dhg_A TRNA selenocysteine ass 99.6 2.7E-15 9.3E-20 132.3 9.3 82 50-132 5-93 (104)
79 2cq2_A Hypothetical protein LO 99.6 2.1E-15 7.3E-20 139.9 9.0 82 48-130 19-107 (114)
80 1nu4_A U1A RNA binding domain; 99.6 3E-15 1E-19 130.2 9.3 81 50-131 4-91 (97)
81 2kxn_B Transformer-2 protein h 99.6 3.4E-15 1.2E-19 139.2 10.1 82 48-130 40-127 (129)
82 2la6_A RNA-binding protein FUS 99.6 4.7E-15 1.6E-19 130.2 10.1 78 49-127 8-99 (99)
83 2e5j_A Methenyltetrahydrofolat 99.6 1E-14 3.4E-19 127.9 11.9 78 51-130 16-95 (97)
84 2dng_A Eukaryotic translation 99.6 9E-15 3.1E-19 129.3 11.5 80 50-132 11-96 (103)
85 2cpi_A CCR4-NOT transcription 99.6 7.8E-15 2.7E-19 132.2 10.8 80 51-131 12-103 (111)
86 2fc9_A NCL protein; structure 99.6 1.2E-14 4.2E-19 127.8 11.7 82 50-132 11-94 (101)
87 2jrs_A RNA-binding protein 39; 99.6 6.1E-15 2.1E-19 133.0 9.8 81 49-130 21-107 (108)
88 3lqv_A PRE-mRNA branch site pr 99.6 7.8E-15 2.7E-19 131.9 10.4 79 51-130 5-86 (115)
89 2i2y_A Fusion protein consists 99.6 6.4E-15 2.2E-19 138.7 10.3 81 49-130 68-149 (150)
90 2a3j_A U1 small nuclear ribonu 99.6 6.4E-15 2.2E-19 138.1 10.1 82 49-131 24-112 (127)
91 2cpx_A Hypothetical protein FL 99.6 1.2E-14 4.2E-19 130.3 11.4 82 50-132 21-108 (115)
92 2kt5_A RNA and export factor-b 99.6 3.2E-14 1.1E-18 129.9 14.0 81 50-131 31-116 (124)
93 2dis_A Unnamed protein product 99.6 1.1E-14 3.7E-19 129.5 10.5 81 51-132 5-95 (109)
94 3ns6_A Eukaryotic translation 99.6 3.1E-15 1.1E-19 132.7 6.8 76 52-128 4-92 (100)
95 1x4e_A RNA binding motif, sing 99.6 2.6E-15 8.9E-20 127.9 6.0 77 51-128 2-84 (85)
96 2dh8_A DAZ-associated protein 99.6 5.6E-15 1.9E-19 130.8 8.0 83 48-132 10-98 (105)
97 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.8E-14 6.2E-19 132.6 11.1 78 48-126 57-140 (140)
98 3p5t_L Cleavage and polyadenyl 99.5 2.7E-15 9.3E-20 130.0 5.2 76 55-131 2-85 (90)
99 2fc8_A NCL protein; structure 99.5 1.7E-14 5.8E-19 126.8 10.3 79 50-132 11-95 (102)
100 1x5o_A RNA binding motif, sing 99.5 3.2E-14 1.1E-18 127.7 12.3 78 51-129 22-112 (114)
101 3ucg_A Polyadenylate-binding p 99.5 1.1E-14 3.9E-19 124.5 8.9 74 54-129 6-85 (89)
102 2cq4_A RNA binding motif prote 99.5 8.3E-15 2.8E-19 131.7 8.5 77 53-131 24-106 (114)
103 1p1t_A Cleavage stimulation fa 99.5 6.1E-15 2.1E-19 129.8 7.3 78 53-131 7-90 (104)
104 2e5i_A Heterogeneous nuclear r 99.5 3.8E-14 1.3E-18 132.9 13.1 79 51-130 20-103 (124)
105 2cqp_A RNA-binding protein 12; 99.5 7.9E-15 2.7E-19 128.0 7.8 78 51-129 12-95 (98)
106 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.7E-14 5.8E-19 138.5 10.3 81 51-132 69-155 (165)
107 1x4b_A Heterogeneous nuclear r 99.5 2.3E-14 7.8E-19 129.2 10.5 79 52-132 25-109 (116)
108 2kn4_A Immunoglobulin G-bindin 99.5 2.6E-14 8.8E-19 135.0 11.2 80 51-131 67-152 (158)
109 2ek1_A RNA-binding protein 12; 99.5 5.8E-15 2E-19 127.9 6.2 76 52-128 13-94 (95)
110 2dgw_A Probable RNA-binding pr 99.5 3.2E-14 1.1E-18 122.9 10.8 78 51-131 7-89 (91)
111 2jvr_A Nucleolar protein 3; RN 99.5 1.2E-14 4.2E-19 133.4 8.3 78 51-129 25-105 (111)
112 2m2b_A RNA-binding protein 10; 99.5 1.1E-14 3.7E-19 134.9 8.0 79 51-131 20-110 (131)
113 1wg1_A KIAA1579 protein, homol 99.5 1.7E-14 5.9E-19 124.5 8.7 76 53-130 4-79 (88)
114 2jwn_A Embryonic polyadenylate 99.5 1.5E-14 5.1E-19 131.7 8.7 77 53-131 35-117 (124)
115 2cqg_A TDP-43, TAR DNA-binding 99.5 5.1E-14 1.7E-18 124.2 11.3 81 49-132 10-96 (103)
116 2bz2_A Negative elongation fac 99.5 3.4E-14 1.2E-18 131.2 10.5 78 51-131 36-113 (121)
117 1s79_A Lupus LA protein; RRM, 99.5 2.3E-14 7.8E-19 129.1 8.5 75 52-128 9-88 (103)
118 1fjc_A Nucleolin RBD2, protein 99.5 2.6E-14 9E-19 124.3 8.6 79 51-131 13-93 (96)
119 3zzy_A Polypyrimidine tract-bi 99.5 3.7E-14 1.3E-18 134.4 10.3 79 52-131 24-108 (130)
120 2e5g_A U6 snRNA-specific termi 99.5 5.9E-14 2E-18 122.3 10.8 79 51-131 5-84 (94)
121 2rs2_A Musashi-1, RNA-binding 99.5 3.7E-14 1.3E-18 127.8 9.8 79 51-131 22-106 (109)
122 3s7r_A Heterogeneous nuclear r 99.5 4E-14 1.4E-18 121.0 9.5 75 50-126 7-87 (87)
123 2lcw_A RNA-binding protein FUS 99.3 1.2E-15 4.2E-20 137.8 0.0 81 51-132 4-98 (116)
124 3beg_B Splicing factor, argini 99.5 3.6E-14 1.2E-18 129.0 9.6 74 53-128 15-93 (115)
125 2nlw_A Eukaryotic translation 99.5 3.5E-14 1.2E-18 126.8 9.2 77 52-129 13-100 (105)
126 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.7E-14 5.7E-19 127.6 7.0 77 51-130 16-99 (100)
127 3q2s_C Cleavage and polyadenyl 99.5 2.5E-15 8.5E-20 152.9 1.8 75 53-128 67-149 (229)
128 2lea_A Serine/arginine-rich sp 99.5 1.6E-14 5.6E-19 135.3 7.2 81 51-132 44-130 (135)
129 2hzc_A Splicing factor U2AF 65 99.5 3.6E-14 1.2E-18 120.8 8.2 72 52-125 4-86 (87)
130 1wel_A RNA-binding protein 12; 99.5 1.7E-14 5.9E-19 132.2 6.6 76 51-128 22-103 (124)
131 1sjr_A Polypyrimidine tract-bi 99.5 3.9E-14 1.3E-18 139.1 9.1 76 54-130 46-125 (164)
132 3n9u_C Cleavage and polyadenyl 99.5 3.8E-14 1.3E-18 136.5 8.8 75 53-128 54-136 (156)
133 2krb_A Eukaryotic translation 99.5 2E-14 7E-19 122.0 5.9 70 54-124 1-81 (81)
134 3pgw_S U1-70K; protein-RNA com 99.5 1.4E-13 4.8E-18 152.6 14.2 79 52-131 100-184 (437)
135 3tyt_A Heterogeneous nuclear r 99.5 9.9E-14 3.4E-18 138.5 11.3 79 52-130 2-81 (205)
136 2mss_A Protein (musashi1); RNA 99.5 2.7E-14 9.1E-19 118.9 6.0 69 56-126 1-75 (75)
137 2ki2_A SS-DNA binding protein 99.5 1.2E-14 4.1E-19 125.0 4.0 75 55-131 2-82 (90)
138 2e44_A Insulin-like growth fac 99.5 8.1E-14 2.8E-18 121.2 9.1 77 52-129 13-92 (96)
139 2f3j_A RNA and export factor b 99.5 2.2E-13 7.7E-18 133.5 13.3 80 50-130 84-168 (177)
140 3egn_A RNA-binding protein 40; 99.5 4.7E-14 1.6E-18 131.8 7.8 82 49-131 40-132 (143)
141 2cpy_A RNA-binding protein 12; 99.5 7.8E-14 2.7E-18 126.2 8.8 78 51-130 12-95 (114)
142 1wez_A HnRNP H', FTP-3, hetero 99.5 1.2E-13 4.2E-18 123.6 9.7 78 51-131 12-94 (102)
143 1wf0_A TDP-43, TAR DNA-binding 99.5 6.4E-14 2.2E-18 120.5 7.5 76 52-132 3-81 (88)
144 2diu_A KIAA0430 protein; struc 99.5 1.4E-13 4.6E-18 124.6 9.8 78 50-132 4-87 (96)
145 3u1l_A PRE-mRNA-splicing facto 99.5 6E-14 2E-18 145.1 8.4 81 51-132 131-232 (240)
146 1uaw_A Mouse-musashi-1; RNP-ty 99.5 4.3E-14 1.5E-18 117.7 5.8 70 55-126 1-76 (77)
147 1wg5_A Heterogeneous nuclear r 99.5 3E-13 1E-17 120.6 11.0 77 52-130 13-95 (104)
148 3md3_A Nuclear and cytoplasmic 99.5 2.9E-13 9.8E-18 125.5 11.2 77 50-127 83-165 (166)
149 1fj7_A Nucleolin RBD1, protein 99.4 1.7E-13 5.7E-18 120.5 9.0 79 51-131 14-97 (101)
150 1fxl_A Paraneoplastic encephal 99.4 2.6E-13 8.9E-18 125.9 10.7 77 53-130 1-83 (167)
151 3d2w_A TAR DNA-binding protein 99.4 2.3E-13 7.9E-18 118.8 9.6 75 51-130 8-85 (89)
152 2db1_A Heterogeneous nuclear r 99.4 1.3E-13 4.5E-18 126.1 8.1 75 52-128 15-97 (118)
153 2qfj_A FBP-interacting repress 99.4 2.6E-13 8.9E-18 131.9 10.6 79 52-131 123-207 (216)
154 3pgw_A U1-A; protein-RNA compl 99.4 2.7E-13 9.2E-18 138.4 11.3 77 50-127 203-281 (282)
155 4f02_A Polyadenylate-binding p 99.4 2.1E-13 7E-18 135.2 10.0 79 51-130 12-96 (213)
156 1b7f_A Protein (SXL-lethal pro 99.4 3E-13 1E-17 126.2 9.9 77 53-130 2-84 (168)
157 4f02_A Polyadenylate-binding p 99.4 2.4E-13 8.1E-18 134.8 9.4 77 53-130 102-182 (213)
158 3pgw_A U1-A; protein-RNA compl 99.4 5.4E-13 1.9E-17 136.1 12.0 82 49-131 4-92 (282)
159 2yh0_A Splicing factor U2AF 65 99.4 5.4E-13 1.8E-17 128.0 10.0 80 51-131 111-196 (198)
160 2lmi_A GRSF-1, G-rich sequence 99.4 2E-13 6.9E-18 122.2 6.4 76 51-128 8-91 (107)
161 3md3_A Nuclear and cytoplasmic 99.4 7.4E-13 2.5E-17 122.7 10.0 76 55-131 1-81 (166)
162 2hgl_A HNRPF protein, heteroge 99.4 3.7E-13 1.3E-17 127.6 7.8 76 51-128 41-124 (136)
163 1iqt_A AUF1, heterogeneous nuc 99.4 1.1E-13 3.8E-18 114.9 3.6 69 56-126 1-75 (75)
164 2dit_A HIV TAT specific factor 99.4 2.4E-12 8.1E-17 116.4 12.5 81 50-131 11-104 (112)
165 2g4b_A Splicing factor U2AF 65 99.4 6.7E-13 2.3E-17 124.6 9.1 75 52-127 92-172 (172)
166 1qm9_A Polypyrimidine tract-bi 99.4 5.6E-13 1.9E-17 128.9 8.8 78 51-129 117-197 (198)
167 2adc_A Polypyrimidine tract-bi 99.4 7.3E-13 2.5E-17 132.6 9.6 79 51-130 31-111 (229)
168 2adc_A Polypyrimidine tract-bi 99.4 1.1E-12 3.8E-17 131.3 10.6 78 51-129 148-228 (229)
169 3sde_A Paraspeckle component 1 99.4 1.2E-12 4.2E-17 133.7 10.9 79 49-128 17-95 (261)
170 3nmr_A Cugbp ELAV-like family 99.4 1E-12 3.6E-17 123.0 9.5 76 51-127 92-175 (175)
171 2xs2_A Deleted in azoospermia- 99.4 3.3E-13 1.1E-17 118.8 5.4 76 53-131 8-88 (102)
172 1l3k_A Heterogeneous nuclear r 99.4 1.1E-12 3.8E-17 125.6 9.2 80 51-132 101-186 (196)
173 2pe8_A Splicing factor 45; RRM 99.4 1.9E-12 6.5E-17 117.3 10.1 78 51-128 5-93 (105)
174 1b7f_A Protein (SXL-lethal pro 99.4 2.4E-12 8.1E-17 120.1 11.0 75 51-126 86-168 (168)
175 2dnn_A RNA-binding protein 12; 99.4 1.3E-12 4.4E-17 119.3 8.8 72 54-128 16-92 (109)
176 2qfj_A FBP-interacting repress 99.4 1.6E-12 5.3E-17 126.4 9.7 78 52-130 26-109 (216)
177 1qm9_A Polypyrimidine tract-bi 99.4 8.9E-13 3E-17 127.6 7.8 76 54-130 3-80 (198)
178 2cjk_A Nuclear polyadenylated 99.3 8.5E-13 2.9E-17 123.3 7.1 75 53-129 86-166 (167)
179 1l3k_A Heterogeneous nuclear r 99.3 1.5E-12 5.1E-17 124.7 9.0 80 50-131 9-94 (196)
180 2hgn_A Heterogeneous nuclear r 99.3 3.4E-13 1.2E-17 128.4 4.1 77 52-131 44-125 (139)
181 1fje_B Nucleolin RBD12, protei 99.3 2.5E-12 8.5E-17 121.6 9.3 76 52-129 97-174 (175)
182 3tht_A Alkylated DNA repair pr 99.3 2.3E-12 7.8E-17 139.6 10.1 79 49-128 13-98 (345)
183 1fxl_A Paraneoplastic encephal 99.3 2.9E-12 9.9E-17 118.9 9.3 74 52-126 86-167 (167)
184 2g4b_A Splicing factor U2AF 65 99.3 2.8E-12 9.5E-17 120.4 9.1 76 53-130 3-89 (172)
185 3nmr_A Cugbp ELAV-like family 99.3 4E-12 1.4E-16 119.1 9.2 78 53-131 2-90 (175)
186 2dnl_A Cytoplasmic polyadenyla 99.3 3.8E-12 1.3E-16 115.2 8.1 73 52-128 6-87 (114)
187 2yh0_A Splicing factor U2AF 65 99.3 4.3E-12 1.5E-16 121.7 8.6 77 53-131 3-90 (198)
188 2hgm_A HNRPF protein, heteroge 99.3 3.8E-12 1.3E-16 119.5 7.9 75 51-128 39-120 (126)
189 3smz_A Protein raver-1, ribonu 99.3 8E-12 2.7E-16 127.6 10.8 80 51-131 181-266 (284)
190 3smz_A Protein raver-1, ribonu 99.3 1.5E-11 5.1E-16 125.6 11.4 75 52-128 20-94 (284)
191 2cjk_A Nuclear polyadenylated 99.3 7.3E-12 2.5E-16 117.0 8.0 74 53-129 2-81 (167)
192 2dha_A FLJ20171 protein; RRM d 99.3 3.1E-12 1.1E-16 119.3 5.3 75 52-128 21-104 (123)
193 3v4m_A Splicing factor U2AF 65 99.2 1.4E-11 4.7E-16 111.6 9.0 77 52-128 3-96 (105)
194 3tyt_A Heterogeneous nuclear r 99.2 8.8E-12 3E-16 124.4 8.2 75 51-126 120-204 (205)
195 2ghp_A U4/U6 snRNA-associated 99.2 1.2E-11 4E-16 126.8 8.8 78 50-129 206-291 (292)
196 2voo_A Lupus LA protein; RNA-b 99.2 1.4E-11 4.7E-16 122.2 8.7 74 54-129 109-187 (193)
197 2ghp_A U4/U6 snRNA-associated 99.2 1.8E-11 6.3E-16 125.4 8.6 78 48-127 35-116 (292)
198 1fje_B Nucleolin RBD12, protei 99.2 2.4E-11 8.1E-16 114.9 8.7 79 50-130 9-92 (175)
199 3s6e_A RNA-binding protein 39; 99.2 9.2E-11 3.2E-15 108.3 10.6 78 51-128 4-92 (114)
200 3ue2_A Poly(U)-binding-splicin 99.2 5.7E-11 2E-15 110.2 8.9 77 52-128 18-108 (118)
201 2d9o_A DNAJ (HSP40) homolog, s 99.1 2.6E-10 9E-15 102.9 12.0 65 65-131 27-92 (100)
202 2j8a_A Histone-lysine N-methyl 99.1 3.9E-11 1.3E-15 114.4 6.4 73 55-128 3-95 (136)
203 1jmt_A Splicing factor U2AF 35 99.1 2.2E-11 7.5E-16 109.9 3.1 67 59-126 20-103 (104)
204 3sde_A Paraspeckle component 1 99.1 1.8E-10 6E-15 117.7 9.4 78 52-130 94-180 (261)
205 2dnr_A Synaptojanin-1; RRM dom 98.8 1.5E-08 5E-13 91.1 8.5 78 51-131 4-88 (91)
206 1owx_A Lupus LA protein, SS-B, 98.8 2.4E-08 8.1E-13 93.8 10.3 77 50-127 14-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 98.5 8.6E-08 2.9E-12 86.7 6.2 76 49-128 10-94 (95)
208 3dxb_A Thioredoxin N-terminall 98.5 1E-07 3.5E-12 94.9 7.4 78 51-128 121-212 (222)
209 1ow1_A Smart/HDAC1 associated 98.0 5.2E-06 1.8E-10 83.6 6.6 108 376-485 38-172 (195)
210 2l9w_A U4/U6 snRNA-associated- 97.8 7.4E-05 2.5E-09 69.5 9.3 71 54-125 21-96 (117)
211 1wey_A Calcipressin 1; structu 97.5 0.00015 5.3E-09 66.5 6.3 73 55-128 6-83 (104)
212 1wwh_A Nucleoporin 35, nucleop 96.0 0.022 7.5E-07 53.5 8.5 70 54-126 24-94 (119)
213 1uw4_A UPF3X; nonsense mediate 95.2 0.076 2.6E-06 47.5 8.9 74 55-129 2-88 (91)
214 1whv_A Poly(A)-specific ribonu 94.6 0.1 3.4E-06 47.7 8.0 55 54-112 16-70 (100)
215 2dhx_A Poly (ADP-ribose) polym 94.4 0.18 6.1E-06 46.4 9.1 67 54-124 8-79 (104)
216 3ctr_A Poly(A)-specific ribonu 93.4 0.073 2.5E-06 48.7 4.6 54 55-112 7-60 (101)
217 3pq1_A Poly(A) RNA polymerase; 93.1 0.046 1.6E-06 61.6 3.5 54 54-109 53-107 (464)
218 3p3d_A Nucleoporin 53; structu 91.9 0.14 4.9E-06 48.8 4.6 68 57-127 10-97 (132)
219 2i2y_A Fusion protein consists 91.0 0.057 1.9E-06 50.3 0.9 37 91-128 13-50 (150)
220 2l08_A Regulator of nonsense t 90.8 0.39 1.3E-05 43.7 6.1 73 54-127 9-94 (97)
221 2kn4_A Immunoglobulin G-bindin 88.9 0.19 6.5E-06 46.8 2.7 26 91-116 13-38 (158)
222 3d45_A Poly(A)-specific ribonu 77.5 4.2 0.00014 46.1 7.8 55 54-112 440-494 (507)
223 2g0c_A ATP-dependent RNA helic 62.4 15 0.00052 30.5 6.1 69 56-127 2-75 (76)
224 3ts2_A Protein LIN-28 homolog 21.1 19 0.00066 34.4 -0.2 29 69-99 1-29 (148)
No 1
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=143.57 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=76.4
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHh--CCCeeCCCeEEEEe
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETL--QGKLFGNPRVHICF 125 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaL--nG~~I~GrrIrVef 125 (806)
....+|+++|||+||+ .+++|++|+++|++||.|++|.|..+||||||+|.+.++|++|++.| ++..|.|+.|+|.|
T Consensus 9 ~~~~~p~~~l~V~nLp-~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLP-GEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCCSSCCSEEEEESCC-TTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CccCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 4445688999999999 99999999999999999999999999999999999999999999987 46789999999999
Q ss_pred ecCCCCC
Q 037075 126 AKSEAGA 132 (806)
Q Consensus 126 AKs~~~~ 132 (806)
++.....
T Consensus 88 a~~~~~~ 94 (101)
T 2cq1_A 88 SNHKELK 94 (101)
T ss_dssp CSCSSCC
T ss_pred cCcccCc
Confidence 9875543
No 2
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=139.73 Aligned_cols=83 Identities=30% Similarity=0.510 Sum_probs=77.4
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeC--CCeEEEEe
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFG--NPRVHICF 125 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~--GrrIrVef 125 (806)
.....++++|||+||+ .+++|++|+++|++||.|++|++..+++||||+|.+.++|++|++.|||..|. |+.|+|+|
T Consensus 11 ~~~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 11 YGKANPTTRLWVGGLG-PNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCCCCCSCEEEECCC-SSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 4445678899999999 99999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ecCCCC
Q 037075 126 AKSEAG 131 (806)
Q Consensus 126 AKs~~~ 131 (806)
+++...
T Consensus 90 a~~~~~ 95 (97)
T 1why_A 90 AKSGPS 95 (97)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 998654
No 3
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=143.64 Aligned_cols=83 Identities=20% Similarity=0.196 Sum_probs=76.2
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC--eeCCCeEEEEe
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGK--LFGNPRVHICF 125 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~--~I~GrrIrVef 125 (806)
.....|+++|||+||+ .+++|++|+++|++||.|++|+|.++|+||||+|.+.++|++|++.|++. .|.|+.|+|+|
T Consensus 9 ~~~~~p~~~l~V~nLp-~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLC-ESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCCCCCSEEEEESCC-SSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCcCCCCCEEEEeCCC-CCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4455789999999999 99999999999999999999999999999999999999999999999765 48999999999
Q ss_pred ecCCCC
Q 037075 126 AKSEAG 131 (806)
Q Consensus 126 AKs~~~ 131 (806)
++....
T Consensus 88 a~~~~~ 93 (104)
T 1wex_A 88 STSKRI 93 (104)
T ss_dssp CSSSSC
T ss_pred ccCccc
Confidence 987554
No 4
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=145.58 Aligned_cols=81 Identities=23% Similarity=0.340 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCe--eCCCeEEEEee
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKL--FGNPRVHICFA 126 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~--I~GrrIrVefA 126 (806)
...+|+++|||+||+ .++||++|+++|++||.|++|++++.||||||+|++.++|++|++.|+|.. |.|+.|+|.||
T Consensus 16 ~~~~ps~~l~V~NLp-~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 16 HKTPASPVVHIRGLI-DGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp -CCCCCSEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred ccCCCCcEEEEeCCC-CCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 345789999999999 999999999999999999999999999999999999999999999999985 78999999999
Q ss_pred cCCC
Q 037075 127 KSEA 130 (806)
Q Consensus 127 Ks~~ 130 (806)
+...
T Consensus 95 ~~k~ 98 (100)
T 3r27_A 95 TSQK 98 (100)
T ss_dssp SCSC
T ss_pred cccc
Confidence 8753
No 5
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=144.83 Aligned_cols=80 Identities=19% Similarity=0.138 Sum_probs=74.5
Q ss_pred CCCCcEEEEecCCCC-CCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC--eeCCCeEEEEeec
Q 037075 51 AEPSEVLWIGFPALL-KVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGK--LFGNPRVHICFAK 127 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~-~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~--~I~GrrIrVefAK 127 (806)
..|+++|||+||+ . +++|++|+++|++||+|++|+|+++|+||||+|++.++|++|++.|+|. .|.|+.|+|+||+
T Consensus 12 ~~p~~~l~V~nLp-~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 12 VETRRVVHIMDFQ-RGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCEEEEESCC-CSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCEEEEeCCC-CCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 4578999999999 9 9999999999999999999999999999999999999999999999875 5999999999998
Q ss_pred CCCC
Q 037075 128 SEAG 131 (806)
Q Consensus 128 s~~~ 131 (806)
..+.
T Consensus 91 ~~~~ 94 (102)
T 1x4d_A 91 KYKR 94 (102)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 7554
No 6
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.7e-16 Score=138.13 Aligned_cols=84 Identities=19% Similarity=0.324 Sum_probs=77.9
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
.....++++|||+||+ .++++++|+++|++||+|++|++..+|+||||+|.+.++|++|++.|+|..|.|+.|+|.|++
T Consensus 9 ~~~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLP-PDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp SCCCCCTTEEEEESCC-TTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCcCCCCCEEEEeCCC-CCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 3445678899999999 999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 037075 128 SEAGA 132 (806)
Q Consensus 128 s~~~~ 132 (806)
.....
T Consensus 88 ~~~~~ 92 (99)
T 2cpj_A 88 HSASL 92 (99)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 86543
No 7
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=142.74 Aligned_cols=75 Identities=24% Similarity=0.416 Sum_probs=70.6
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
..++|||+||+ .++||++|+++|++||+|++|++..+ +|||||+|.+.++|++|++.|||..|.|+.|+|+||
T Consensus 18 ~gt~lfV~nLp-~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLP-QNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCC-TTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCC-CCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999 99999999999999999999999865 579999999999999999999999999999999999
Q ss_pred cC
Q 037075 127 KS 128 (806)
Q Consensus 127 Ks 128 (806)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 8
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=146.73 Aligned_cols=84 Identities=18% Similarity=0.265 Sum_probs=75.9
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCC--CeeCCCeEEEEe
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQG--KLFGNPRVHICF 125 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG--~~I~GrrIrVef 125 (806)
.+...++++|||+||+ ++++|++|+++|++||+|++|+|+++||||||+|.+.++|++|++.|++ ..|.|+.|+|.|
T Consensus 10 ~~~~~~~~~LfV~nLp-~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 10 HGSGVPSRVIHIRKLP-IDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp --CCCCCCEEEECSCC-TTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred cCCCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3456678999999999 9999999999999999999999999999999999999999999999874 789999999999
Q ss_pred ecCCCCC
Q 037075 126 AKSEAGA 132 (806)
Q Consensus 126 AKs~~~~ 132 (806)
++.....
T Consensus 89 A~~~~~~ 95 (105)
T 1sjq_A 89 SNHKELK 95 (105)
T ss_dssp CSSSSCC
T ss_pred cCCCCCC
Confidence 9875543
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.9e-16 Score=134.21 Aligned_cols=80 Identities=26% Similarity=0.469 Sum_probs=74.9
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
.++++|||+||+ .++++++|+++|++||.|++|++..+ ++||||+|.+.++|++|++.|||..|.|+.|+|+|
T Consensus 3 ~~~~~l~v~nlp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLH-FNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCC-TTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCC-CCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 567899999999 99999999999999999999999876 67999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 037075 126 AKSEAGA 132 (806)
Q Consensus 126 AKs~~~~ 132 (806)
++.....
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9886654
No 10
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.3e-16 Score=138.01 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG---RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d---KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
....++++|||+||+ .+++|++|+++|++||.|+.|+|..+ ++||||+|.+.++|++|++.|||..|.|+.|+|+|
T Consensus 17 ~~~~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLP-PDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCCSSEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 344567899999999 99999999999999999999999765 67999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 037075 126 AKSEAGA 132 (806)
Q Consensus 126 AKs~~~~ 132 (806)
++..+..
T Consensus 96 a~~~~~~ 102 (109)
T 1x4a_A 96 PRSGRGT 102 (109)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9986654
No 11
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.3e-16 Score=133.55 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=74.2
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~ 130 (806)
..++++|||+||+ .++++++|+++|++||.|++|++. |+||||+|.+.++|++|++.|+|..|+|+.|+|+|++...
T Consensus 5 ~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLP-REATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCC-SSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCC-CCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 4578899999999 999999999999999999999997 8999999999999999999999999999999999998866
Q ss_pred CC
Q 037075 131 GA 132 (806)
Q Consensus 131 ~~ 132 (806)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=7e-16 Score=134.97 Aligned_cols=81 Identities=22% Similarity=0.312 Sum_probs=75.3
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..++++|||+||+ .++++++|+++|++||.|++|+|..+ ++||||+|.+.++|++|++.|||..|.|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLS-YTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCC-TTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4577899999999 99999999999999999999999875 5899999999999999999999999999999999
Q ss_pred eecCCCCC
Q 037075 125 FAKSEAGA 132 (806)
Q Consensus 125 fAKs~~~~ 132 (806)
|++.....
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99986654
No 13
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=3.6e-16 Score=148.14 Aligned_cols=83 Identities=20% Similarity=0.241 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
....++++|||+||+ .+++|++|+++|++||+|++|+|+.+ ++||||+|.+.++|++|++.|+|..|.|+.|+
T Consensus 34 ~~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLS-FYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp TTTTTCCEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred ccCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 334578999999999 99999999999999999999999765 57999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 037075 123 ICFAKSEAGA 132 (806)
Q Consensus 123 VefAKs~~~~ 132 (806)
|+|+++....
T Consensus 113 V~~a~~~~~~ 122 (156)
T 1h2v_Z 113 TDWDAGFKEG 122 (156)
T ss_dssp EEEESCCCTT
T ss_pred EEECCCCCCc
Confidence 9999875543
No 14
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-15 Score=134.14 Aligned_cols=82 Identities=21% Similarity=0.393 Sum_probs=76.1
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
...+.++|||+||+ .++++++|+++|++||.|++|+|..+ ++||||+|.+.++|++|++.|+|..|+|+.|+|.|
T Consensus 11 ~~~~~~~l~V~nlp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNIP-FRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESCC-TTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999 99999999999999999999999876 78999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 037075 126 AKSEAGA 132 (806)
Q Consensus 126 AKs~~~~ 132 (806)
++.....
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9986654
No 15
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.1e-16 Score=133.33 Aligned_cols=77 Identities=27% Similarity=0.396 Sum_probs=73.0
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHh-CCCeeCCCeEEEEeec
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETL-QGKLFGNPRVHICFAK 127 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaL-nG~~I~GrrIrVefAK 127 (806)
...++++|||+||+ .++++++|+++|++||.|..|++..+++||||+|.+.++|++|++.| +|..+.|+.|+|+|+|
T Consensus 8 ~~~~~~~l~V~~l~-~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLG-DTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCT-TTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCC-CCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34567899999999 99999999999999999999999999999999999999999999999 9999999999999986
No 16
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=145.87 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=76.5
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCC--CeeCCCeEEEEe
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQG--KLFGNPRVHICF 125 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG--~~I~GrrIrVef 125 (806)
.....|+++|||+||+ .+++|++|+++|++||.|++|+|+.+||||||+|++.++|++|++.|++ ..|.|+.|+|.|
T Consensus 25 ~~~~~ps~~LfVgNLp-~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLP-IDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp TSCSSCCSEEEEESCC-TTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred cccCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 3345688999999999 9999999999999999999999999999999999999999999999984 689999999999
Q ss_pred ecCCCCC
Q 037075 126 AKSEAGA 132 (806)
Q Consensus 126 AKs~~~~ 132 (806)
++.....
T Consensus 104 a~~k~~~ 110 (119)
T 2ad9_A 104 SNHKELK 110 (119)
T ss_dssp CSSSSCC
T ss_pred ccCCCCC
Confidence 9875543
No 17
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.2e-16 Score=136.07 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=75.9
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHHh-CCCeeCCCeE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-------RSYAFVQFRSIISACRAKETL-QGKLFGNPRV 121 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-------KGyAFVeF~s~EdAekAleaL-nG~~I~GrrI 121 (806)
...++++|||+||+ .++++++|+++|++||.|+.|+|+.+ ++||||+|.+.++|++|++.| ||..|.|+.|
T Consensus 11 ~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNIP-FQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESCC-TTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEeCCC-CcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34567899999999 99999999999999999999999876 799999999999999999999 9999999999
Q ss_pred EEEeecCCCCC
Q 037075 122 HICFAKSEAGA 132 (806)
Q Consensus 122 rVefAKs~~~~ 132 (806)
+|.|++.....
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999986654
No 18
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.3e-16 Score=136.42 Aligned_cols=83 Identities=22% Similarity=0.380 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
.+..++++|||+||+ .++++++|+++|++||.|+.|+|..+ ++||||+|.+.++|++|++.|+|..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp-~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 10 RRADDNATIRVTNLS-EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCSSSEEEEEESCC-TTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCC-CCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 345578999999999 99999999999999999999999865 57999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 037075 123 ICFAKSEAGA 132 (806)
Q Consensus 123 VefAKs~~~~ 132 (806)
|.|++.....
T Consensus 89 v~~a~~~~~~ 98 (103)
T 2cq0_A 89 VEWAKPSTNS 98 (103)
T ss_dssp EEESSCCCCS
T ss_pred EEECCCCCCC
Confidence 9999886543
No 19
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=4.1e-16 Score=142.33 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=75.6
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
...++++|||+||+ .++++++|+++|++||.|++|.|+.+ ++||||+|.+.++|++|++.|||..|.|+.|+|
T Consensus 18 ~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 18 RSVEGWILFVTGVH-EEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCSSSEEEEEESCC-TTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34567899999999 99999999999999999999999866 789999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 037075 124 CFAKSEAGA 132 (806)
Q Consensus 124 efAKs~~~~ 132 (806)
+|++.....
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999876554
No 20
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.5e-16 Score=143.77 Aligned_cols=84 Identities=15% Similarity=0.204 Sum_probs=76.0
Q ss_pred CCCCCCCcEEEEecCCCCC-CCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCC--CeeCCCeEEEE
Q 037075 48 DKNAEPSEVLWIGFPALLK-VDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQG--KLFGNPRVHIC 124 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~-vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG--~~I~GrrIrVe 124 (806)
.....|+++|||+||+ .+ ++|++|+++|++||+|.+|+|.+.||||||+|.+.++|++|++.|++ ..|.|+.|+|+
T Consensus 19 ~~~~~p~~~l~V~NLp-~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 19 DQKQELGRVIHLSNLP-HSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp CCSSCCCCEEEEESCC-CSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred cccCCCCCEEEEeCCC-CccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3446789999999999 87 99999999999999999999999999999999999999999998865 56999999999
Q ss_pred eecCCCCC
Q 037075 125 FAKSEAGA 132 (806)
Q Consensus 125 fAKs~~~~ 132 (806)
|++.....
T Consensus 98 ~a~~~~~~ 105 (112)
T 1x4f_A 98 LSEKYKKL 105 (112)
T ss_dssp EECSCSSS
T ss_pred ECcccccc
Confidence 99875543
No 21
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=134.76 Aligned_cols=82 Identities=21% Similarity=0.371 Sum_probs=75.8
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
...+.++|||+||+ .++++++|+++|++||.|++|+|..+ ++||||+|.+.++|++|++.|+|..|.|+.|+|.|
T Consensus 11 ~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLS-RDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCC-TTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCC-ccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34567899999999 99999999999999999999999874 78999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 037075 126 AKSEAGA 132 (806)
Q Consensus 126 AKs~~~~ 132 (806)
++.....
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9986543
No 22
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.7e-16 Score=135.55 Aligned_cols=81 Identities=26% Similarity=0.397 Sum_probs=75.1
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
..++++|||+||+ .++++++|+++|++||.|++|+|..+ ++||||+|.+.++|++|++.|||..|.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLD-DGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCC-TTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 4567899999999 99999999999999999999999855 789999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037075 127 KSEAGA 132 (806)
Q Consensus 127 Ks~~~~ 132 (806)
+.....
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 986653
No 23
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.2e-16 Score=135.98 Aligned_cols=83 Identities=29% Similarity=0.410 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
....++++|||+||+ .++++++|+++|++||.|++|+|+.+ ++||||+|.+.++|++|++.|+|..|.|+.|+
T Consensus 7 ~~~~~~~~l~V~nLp-~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 7 GMATTKRVLYVGGLA-EEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp CSCCCCSCEEEESCC-SSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CcCCCCCEEEEeCCC-CCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 344678899999999 99999999999999999999999765 78999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 037075 123 ICFAKSEAGA 132 (806)
Q Consensus 123 VefAKs~~~~ 132 (806)
|.|++.....
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2cqb_A 86 VNLAKPMRIK 95 (102)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999986654
No 24
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=132.16 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=74.5
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
....++++|||+||+ .++++++|+++|++||.|++|++. ++||||+|.+.++|++|++.|||..|.|+.|+|+|++.
T Consensus 5 ~~~~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 5 SSGKASTKLHVGNIS-PTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCCCSSEEEEEESCC-SSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 345678899999999 999999999999999999999996 56999999999999999999999999999999999988
Q ss_pred CCCC
Q 037075 129 EAGA 132 (806)
Q Consensus 129 ~~~~ 132 (806)
....
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6654
No 25
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.7e-16 Score=135.05 Aligned_cols=83 Identities=24% Similarity=0.389 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
....+.++|||+||+ .++++++|+++|++||.|++|+|+.+ ++||||+|.+.++|++|++.|||..|.|+.|+
T Consensus 7 ~~~~~~~~l~v~nLp-~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 7 GMASDEGKLFVGGLS-FDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCSEEEEESCC-TTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCEEEEECCC-CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345678899999999 99999999999999999999999875 68999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 037075 123 ICFAKSEAGA 132 (806)
Q Consensus 123 VefAKs~~~~ 132 (806)
|.|++.....
T Consensus 86 v~~a~~~~~~ 95 (102)
T 1x5s_A 86 VDQAGKSSDN 95 (102)
T ss_dssp EEEEECCCCC
T ss_pred EEECCCCCCC
Confidence 9999886553
No 26
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=1e-15 Score=135.22 Aligned_cols=81 Identities=27% Similarity=0.415 Sum_probs=75.2
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCC---CeEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGN---PRVH 122 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~G---rrIr 122 (806)
..++++|||+||+ .++++++|+++|+.||.|++|+|..+ ++||||+|.+.++|++|++.|||..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLN-KQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCC-TTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3568899999999 99999999999999999999999876 7899999999999999999999999988 9999
Q ss_pred EEeecCCCCC
Q 037075 123 ICFAKSEAGA 132 (806)
Q Consensus 123 VefAKs~~~~ 132 (806)
|.|++.....
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999986653
No 27
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.9e-16 Score=137.60 Aligned_cols=81 Identities=28% Similarity=0.497 Sum_probs=76.3
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~ 130 (806)
..+.++|||+||+ .++++++|+++|++||.|.+|+|..+++||||+|.+.++|++|++.|+|..|.|+.|+|.|++...
T Consensus 22 ~~~~~~l~V~nl~-~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 22 SPKNCTVYCGGIA-SGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CSSCCEEEEECCS-SCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCcEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 3467899999999 999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred CC
Q 037075 131 GA 132 (806)
Q Consensus 131 ~~ 132 (806)
..
T Consensus 101 ~~ 102 (109)
T 1x4g_A 101 DM 102 (109)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 28
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.3e-16 Score=135.37 Aligned_cols=80 Identities=18% Similarity=0.303 Sum_probs=74.5
Q ss_pred CCCCcEEEEecCCCCCCCHHHHH----HhhcCCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILR----KAFSPFGEIEKITVFPG---RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLr----elFs~FGeI~~VrI~~d---KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
....++|||+||+ .++++++|+ ++|++||+|++|+|..+ |+||||+|.+.++|++|++.|||..|+|+.|+|
T Consensus 6 ~~~~~~l~V~nL~-~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 6 SGNGADVQVSNID-YRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp CSSCEEEEEESCC-TTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCEEEEECCC-CCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4456899999999 999999999 99999999999999876 899999999999999999999999999999999
Q ss_pred EeecCCCC
Q 037075 124 CFAKSEAG 131 (806)
Q Consensus 124 efAKs~~~ 131 (806)
+|++....
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99987554
No 29
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.64 E-value=1.5e-15 Score=136.46 Aligned_cols=84 Identities=23% Similarity=0.408 Sum_probs=76.9
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
.....+.++|||+||+ .++++++|+++|+.||.|++|+|+.+ +|||||+|.+.++|++|++.|+|..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLS-PEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp CCCSTTCEEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCcEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4445678999999999 99999999999999999999999876 5899999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 037075 122 HICFAKSEAGA 132 (806)
Q Consensus 122 rVefAKs~~~~ 132 (806)
+|.|++.....
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999886654
No 30
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.64 E-value=1.2e-15 Score=135.19 Aligned_cols=79 Identities=34% Similarity=0.532 Sum_probs=73.6
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~ 130 (806)
..++++|||+||+ .++++++|+++|++||.|++|++. ++||||+|.+.++|++|++.|+|..|.|+.|+|.|++...
T Consensus 8 ~~~~~~l~V~nl~-~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 8 MAKVKVLFVRNLA-NTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCCEEEECCC-TTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 4567899999999 999999999999999999999996 6799999999999999999999999999999999998866
Q ss_pred CC
Q 037075 131 GA 132 (806)
Q Consensus 131 ~~ 132 (806)
..
T Consensus 85 ~~ 86 (103)
T 2dgu_A 85 QK 86 (103)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 31
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.5e-16 Score=134.68 Aligned_cols=80 Identities=26% Similarity=0.453 Sum_probs=74.5
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEE-EEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKI-TVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~V-rI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
.++++|||+||+ .++++++|+++|++||.|.+| +|+.+ ++||||+|.+.++|++|++.|||..|.|+.|+|.
T Consensus 3 ~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLD-PEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCC-TTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 467899999999 999999999999999999999 88875 7899999999999999999999999999999999
Q ss_pred eecCCCCC
Q 037075 125 FAKSEAGA 132 (806)
Q Consensus 125 fAKs~~~~ 132 (806)
|++.....
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99886654
No 32
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.9e-16 Score=135.82 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
....++++|||+||+ .++++++|+++|++||.|++|.|..+ ++||||+|.+.++|++|++.|||..|+|+.|+
T Consensus 8 ~~~~~~~~l~V~nLp-~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 8 PDVDGMITLKVDNLT-YRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SCCSCCCEEEEESCC-TTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCeEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 344568899999999 99999999999999999999999764 68999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 037075 123 ICFAKSEAGA 132 (806)
Q Consensus 123 VefAKs~~~~ 132 (806)
|.|++..+..
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999986544
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.64 E-value=6.8e-16 Score=140.37 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=72.8
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..|.++|||+||+ .+++|++|+++|++||+|++|+|+.+ ||||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 3 ~~p~~~lfV~nL~-~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 3 QIPLKEVTFARLN-DNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp CSCCCEEEEESCC-TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEECCC-CCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3578899999999 99999999999999999999999765 6899999999999999999999999999999999
Q ss_pred eecCC
Q 037075 125 FAKSE 129 (806)
Q Consensus 125 fAKs~ 129 (806)
|++..
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 99754
No 34
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.1e-15 Score=132.20 Aligned_cols=81 Identities=19% Similarity=0.291 Sum_probs=74.5
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
...++++|||+||+ .++++++|+++|++||.|++|+|+.+ ++||||+|.+.++|++|++ |+|..|.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGIP-HNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESCC-SSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 34577899999999 99999999999999999999999864 7899999999999999998 9999999999999
Q ss_pred EeecCCCCC
Q 037075 124 CFAKSEAGA 132 (806)
Q Consensus 124 efAKs~~~~ 132 (806)
.|++.....
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999976553
No 35
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.8e-16 Score=136.73 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=73.5
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
...+++|||+||+ .++++++|+++|++||.|++|++...+|||||+|.+.++|++|++.|||..|+|+.|+|.|+++
T Consensus 24 ~~~~~~l~V~nlp-~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNIP-HFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESCC-TTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCCC-cccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3456899999999 9999999999999999999999999999999999999999999999999999999999999986
No 36
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=6.6e-16 Score=135.40 Aligned_cols=81 Identities=27% Similarity=0.380 Sum_probs=72.6
Q ss_pred CCCCCcEEEEecCCCC-CCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 50 NAEPSEVLWIGFPALL-KVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~-~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
...++++|||+||+ . ++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|+|..+.|+.|+|+|++.
T Consensus 6 ~~~~~~~l~V~nlp-~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 6 NIPPKSRLFIGNLP-LKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp ---CCEEEEEESST-TSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred cCCCCCEEEEeCCC-cccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 45678999999999 8 99999999999999999999994 89999999999999999999999999999999999988
Q ss_pred CCCCC
Q 037075 129 EAGAN 133 (806)
Q Consensus 129 ~~~~~ 133 (806)
.....
T Consensus 83 ~~~~~ 87 (96)
T 2kvi_A 83 NARPQ 87 (96)
T ss_dssp CCC--
T ss_pred CCCCC
Confidence 66543
No 37
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.63 E-value=5.3e-16 Score=140.93 Aligned_cols=78 Identities=29% Similarity=0.397 Sum_probs=72.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
.+++|||+||+ .+++|++|+++|++||.|++|+|+.+ ||||||+|.+.++|++|++.|+|..|+|+.|+|.|++.
T Consensus 4 ~~~~lfV~nLp-~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLD-KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCC-CCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 35689999999 99999999999999999999999876 68999999999999999999999999999999999987
Q ss_pred CCC
Q 037075 129 EAG 131 (806)
Q Consensus 129 ~~~ 131 (806)
...
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 544
No 38
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.63 E-value=8.7e-16 Score=134.15 Aligned_cols=78 Identities=22% Similarity=0.387 Sum_probs=73.4
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
|+++|||+||+ .++++++|+++|++||.|.+|++..+ +|||||+|.+.++|++|++.|+|..|+|+.|+|.|+
T Consensus 1 P~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIP-YDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCC-TTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCC-CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 67899999999 99999999999999999999999865 789999999999999999999999999999999999
Q ss_pred cCCCC
Q 037075 127 KSEAG 131 (806)
Q Consensus 127 Ks~~~ 131 (806)
+....
T Consensus 80 ~~~~~ 84 (96)
T 2x1f_A 80 SNSDI 84 (96)
T ss_dssp SCSSG
T ss_pred CCCCC
Confidence 87543
No 39
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.2e-16 Score=136.48 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=73.6
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..++++|||+||+ .++++++|+++|+.||.|.+|.+..+ +|||||+|.+.++|++|++.|+|..|.|+.|+|+
T Consensus 20 ~~~~~~l~V~nlp-~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVH-EEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3567899999999 99999999999999999999999765 6899999999999999999999999999999999
Q ss_pred eecCCC
Q 037075 125 FAKSEA 130 (806)
Q Consensus 125 fAKs~~ 130 (806)
|++...
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998754
No 40
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.63 E-value=7.4e-16 Score=131.29 Aligned_cols=77 Identities=22% Similarity=0.421 Sum_probs=70.2
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
.+.++|||+||+ .++++++|+++|++||.|.+|++..+ +|||||+|.+.++|++|++.|+|..++|+.|+|+|
T Consensus 4 ~~~~~l~v~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLS-PEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCC-CCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 467899999999 99999999999999999999999875 58999999999999999999999999999999999
Q ss_pred ecCC
Q 037075 126 AKSE 129 (806)
Q Consensus 126 AKs~ 129 (806)
++..
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9864
No 41
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=134.34 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=75.4
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
...++++|||+||+ .++++++|+++|++||.|++|++..+ +|||||+|.+.++|++|++.|+|..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 11 ERNQDATVYVGGLD-EKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCTTTEEEEECCC-TTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred cCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567899999999 99999999999999999999999875 589999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 037075 124 CFAKSEAGA 132 (806)
Q Consensus 124 efAKs~~~~ 132 (806)
.|++.....
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999886653
No 42
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=137.74 Aligned_cols=81 Identities=23% Similarity=0.375 Sum_probs=74.8
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
..+.++|||+||+ .++++++|+++|++||.|++|+|..+ +|||||+|.+.++|++|++.|+|..|+|+.|+|+|
T Consensus 4 ~~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLN-RETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCT-TTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999 99999999999999999999999886 49999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 037075 126 AKSEAGA 132 (806)
Q Consensus 126 AKs~~~~ 132 (806)
++.....
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9875543
No 43
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=132.20 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=73.0
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
.....+.++|||+||+ .++++++|+++|++||.|++|++..+ ++||||+|.+.++|++|++.|||..|.|+.|
T Consensus 10 ~~~~~~~~~l~V~nlp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLP-FSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CSCCCCTTSEEEESCC-TTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCEEEEECCC-CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 3445677899999999 99999999999999999999999765 6899999999999999999999999999999
Q ss_pred EEEeec
Q 037075 122 HICFAK 127 (806)
Q Consensus 122 rVefAK 127 (806)
+|+|||
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999986
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=132.55 Aligned_cols=82 Identities=12% Similarity=0.243 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
....+.++|||+||+ .++++++|+++|++||.|++|++..+ ++||||+|.+.++|++|++.|+|..|.|+.|+|
T Consensus 12 ~~~~~~~~l~v~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLP-FSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCC-TTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCC-CCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 334567899999999 99999999999999999999999876 489999999999999999999999999999999
Q ss_pred EeecCCCC
Q 037075 124 CFAKSEAG 131 (806)
Q Consensus 124 efAKs~~~ 131 (806)
+|+++...
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99987553
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.63 E-value=9.3e-16 Score=130.14 Aligned_cols=76 Identities=32% Similarity=0.493 Sum_probs=71.4
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..++++|||+||+ .++++++|+++|++||.|.+|++..+ ++||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 4 ~~~~~~l~V~nl~-~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGLA-EEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECCC-TTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCC-CCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4578899999999 99999999999999999999998654 8999999999999999999999999999999999
Q ss_pred eec
Q 037075 125 FAK 127 (806)
Q Consensus 125 fAK 127 (806)
|||
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 986
No 46
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.63 E-value=1.2e-15 Score=128.93 Aligned_cols=76 Identities=29% Similarity=0.368 Sum_probs=71.5
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
+.+|||+||+ .++++++|+++|++||.|.+|++..+ +|||||+|.+.++|++|++.|+|..++|+.|+|.|++
T Consensus 1 t~~l~V~nlp-~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLN-VNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCC-TTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCCC-CCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 4689999999 99999999999999999999999866 7899999999999999999999999999999999998
Q ss_pred CCC
Q 037075 128 SEA 130 (806)
Q Consensus 128 s~~ 130 (806)
...
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 47
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.1e-16 Score=132.75 Aligned_cols=80 Identities=29% Similarity=0.388 Sum_probs=73.8
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
.....++++|||+||+ .++++++|+++|++||.|++|++..+ ++||||+|.+.++|++|++.|||..|.|+.|
T Consensus 9 ~~~~~~~~~l~v~nlp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLS-LYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCSCCGGGCEEEESCC-SSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCEEEEECCC-CCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3445678999999999 99999999999999999999999754 5799999999999999999999999999999
Q ss_pred EEEeecC
Q 037075 122 HICFAKS 128 (806)
Q Consensus 122 rVefAKs 128 (806)
+|+|+++
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999986
No 48
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=133.35 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=73.6
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC---------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG---------RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d---------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
.++++|||+||+ .+++|++|+++|++||.|+.|+|..+ ++||||+|.+.++|++|++.|+|..|.|+.|+
T Consensus 3 ~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLN-FSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCC-TTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 467899999999 99999999999999999999998742 57999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 037075 123 ICFAKSEAGA 132 (806)
Q Consensus 123 VefAKs~~~~ 132 (806)
|.|++.....
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999886654
No 49
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=141.10 Aligned_cols=83 Identities=31% Similarity=0.433 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
....+.++|||+||+ .+++|++|+++|+.||+|++|+|+.+ +|||||+|.+.++|++|++.|+|..|.|+.|+
T Consensus 37 ~~~~~~~~l~V~nLp-~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIP-TTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp CCTTTTSEEEEESCS-TTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 344567899999999 99999999999999999999999764 67999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 037075 123 ICFAKSEAGA 132 (806)
Q Consensus 123 VefAKs~~~~ 132 (806)
|+|++.....
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999986543
No 50
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.9e-15 Score=133.39 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=74.7
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
...++++|||+||+ .++++++|+++|++||.|++|+|..+ ++||||+|.+.++|++|++.|+|..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp-~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLD-YKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCC-TTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999 99999999999999999999999876 6899999999999999999999999999999999
Q ss_pred eecCCCC
Q 037075 125 FAKSEAG 131 (806)
Q Consensus 125 fAKs~~~ 131 (806)
|++....
T Consensus 90 ~a~~~~~ 96 (114)
T 2do0_A 90 MDERALP 96 (114)
T ss_dssp ECSCCCC
T ss_pred EcccCCC
Confidence 9986544
No 51
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.6e-15 Score=133.62 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhC------CCee
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQ------GKLF 116 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLn------G~~I 116 (806)
....++++|||+||+ .++++++|+++|+.||.|..|+|+.+ +|||||+|.+.++|++|++.|+ |..|
T Consensus 10 ~~~~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLS-FDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCEEEESCC-TTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CcCCCCCEEEEECCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 345678899999999 99999999999999999999999854 7899999999999999999999 9999
Q ss_pred CCCeEEEEeecCCCCC
Q 037075 117 GNPRVHICFAKSEAGA 132 (806)
Q Consensus 117 ~GrrIrVefAKs~~~~ 132 (806)
+|+.|+|.|+++....
T Consensus 89 ~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSCEEEEECCCCCCCC
T ss_pred cCEEEEEEECCCCccC
Confidence 9999999999886554
No 52
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.62 E-value=1.2e-15 Score=131.45 Aligned_cols=81 Identities=14% Similarity=0.223 Sum_probs=74.9
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
..++++|||+||+ .++++++|+++|++||.|+.|++..+ ++||||+|.+.++|++|++.|+|..|+|+.|+|.|+
T Consensus 5 ~~~~~~l~V~nlp-~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLP-FDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCC-TTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4567899999999 99999999999999999999999864 689999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037075 127 KSEAGA 132 (806)
Q Consensus 127 Ks~~~~ 132 (806)
+.....
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 986653
No 53
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4e-15 Score=133.30 Aligned_cols=78 Identities=10% Similarity=0.065 Sum_probs=73.3
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCC-----CeEEEEee
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGN-----PRVHICFA 126 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~G-----rrIrVefA 126 (806)
....+|||+||+ .++++++|+++|++||+|+.|+|+.+ +||||+|.+.++|++||+.|||..|.| +.|+|.|+
T Consensus 13 ~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 13 RSENRVVVSGLP-PSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp SCCCEEEEESCC-SSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 456899999999 99999999999999999999999888 999999999999999999999999999 99999999
Q ss_pred cCCCC
Q 037075 127 KSEAG 131 (806)
Q Consensus 127 Ks~~~ 131 (806)
++...
T Consensus 91 ~~~~~ 95 (108)
T 1x4c_A 91 GPRSP 95 (108)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 88543
No 54
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.3e-15 Score=130.44 Aligned_cols=80 Identities=25% Similarity=0.456 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCC--CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPF--GEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~F--GeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
....++++|||+||+ .++++++|+++|++| |.|.+|++ .++||||+|.+.++|++|++.|||..|.|+.|+|.|+
T Consensus 10 ~~~~~~~~l~V~nLp-~~~t~~~l~~~F~~~g~g~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 10 DTMSSVKILYVRNLM-LSTSEEMIEKEFNNIKPGAVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCSSCCCEEEEESCC-TTCCHHHHHHHHHTTSTTCEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred cccCCcCEEEEeCCC-CCCCHHHHHHHHHhcCCcceEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 334578999999999 999999999999999 99999988 4789999999999999999999999999999999999
Q ss_pred cCCCC
Q 037075 127 KSEAG 131 (806)
Q Consensus 127 Ks~~~ 131 (806)
++...
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 55
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=1.7e-15 Score=134.29 Aligned_cols=79 Identities=20% Similarity=0.261 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
....++++|||+||+ ..+++++|+++|++||.|++|+|+.+ ++||||+|.+.++|++|++.|+|..|.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLD-FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCC-TTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345678999999999 99999999999999999999999865 789999999999999999999999999999999
Q ss_pred EeecC
Q 037075 124 CFAKS 128 (806)
Q Consensus 124 efAKs 128 (806)
+|+++
T Consensus 103 ~~a~s 107 (107)
T 3ulh_A 103 QLVTS 107 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99863
No 56
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.61 E-value=2.2e-15 Score=133.40 Aligned_cols=82 Identities=27% Similarity=0.347 Sum_probs=75.1
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCee---CCCe
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLF---GNPR 120 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I---~Grr 120 (806)
...++++|||+||+ .+++|++|+++|++||.|++|+|+.+ ++||||+|.+.++|++|++.|||..+ .|+.
T Consensus 9 ~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQIP-RNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCTTCEEEEEESCC-TTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34567899999999 99999999999999999999999874 68999999999999999999999998 8999
Q ss_pred EEEEeecCCCCC
Q 037075 121 VHICFAKSEAGA 132 (806)
Q Consensus 121 IrVefAKs~~~~ 132 (806)
|+|.|++.....
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999886653
No 57
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.3e-15 Score=129.97 Aligned_cols=79 Identities=20% Similarity=0.290 Sum_probs=73.1
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~ 129 (806)
...++++|||+||+ .++++++|+++|++||.|++|++. ++||||+|.+.++|++|++.|+|..|+|+.|+|.|++..
T Consensus 5 ~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 5 SSGNTWKIFVGNVS-AACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SSCCSCCEEEESCC-TTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCCEEEEeCCC-CCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 34567899999999 999999999999999999999996 569999999999999999999999999999999999876
Q ss_pred CC
Q 037075 130 AG 131 (806)
Q Consensus 130 ~~ 131 (806)
..
T Consensus 82 ~~ 83 (90)
T 2dnp_A 82 QK 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 58
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=133.00 Aligned_cols=77 Identities=22% Similarity=0.335 Sum_probs=72.9
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCCC
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEAGA 132 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~~~ 132 (806)
++|||+||+ .++++++|+++|++||+|++|++..+ ++||||+|.+.++|++|++.|+|..+.|+.|+|.|++.....
T Consensus 1 ~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLG-TGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCC-SSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 479999999 99999999999999999999999997 999999999999999999999999999999999999986643
No 59
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.61 E-value=2.7e-15 Score=135.07 Aligned_cols=84 Identities=23% Similarity=0.402 Sum_probs=75.9
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
.....+.++|||+||+ .++++++|+++|++||.|++|+|..+ ++||||+|.+.++|++|++.|||..|.|+.|
T Consensus 19 ~~~~~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLP-QEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCCSTTCCEEEESCC-SSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcCCCCCcEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3344567899999999 99999999999999999999999876 4799999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 037075 122 HICFAKSEAGA 132 (806)
Q Consensus 122 rVefAKs~~~~ 132 (806)
+|+|++.....
T Consensus 98 ~V~~a~~~~~~ 108 (115)
T 2cpz_A 98 KVQLKRSKNDS 108 (115)
T ss_dssp EEECCCCSCCC
T ss_pred EEEEcCCCCcC
Confidence 99999876543
No 60
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.8e-15 Score=129.38 Aligned_cols=80 Identities=26% Similarity=0.423 Sum_probs=73.5
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~ 129 (806)
...++++|||+|+ ++++++|+++|++||+|++|+|...++||||+|.+.++|++|++.|+|..|.|+.|+|.|++..
T Consensus 11 ~~~~~~~l~V~n~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS---SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC---CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3456789999996 6999999999999999999999888999999999999999999999999999999999999886
Q ss_pred CCC
Q 037075 130 AGA 132 (806)
Q Consensus 130 ~~~ 132 (806)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 61
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=132.65 Aligned_cols=80 Identities=24% Similarity=0.219 Sum_probs=71.3
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCC-eeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCC-CeeCCCeEEEEeecC
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGE-IEKITVFPGRSYAFVQFRSIISACRAKETLQG-KLFGNPRVHICFAKS 128 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGe-I~~VrI~~dKGyAFVeF~s~EdAekAleaLnG-~~I~GrrIrVefAKs 128 (806)
..++++|||+||+ .+++|++|+++|++||. |..+.+ ..++||||+|.+.++|++|++.||| ..|+|+.|+|+|++.
T Consensus 5 ~~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLS-PAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCC-TTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCCcEEEEeCCC-CCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 4567899999999 99999999999999999 555544 5689999999999999999999999 999999999999987
Q ss_pred CCCC
Q 037075 129 EAGA 132 (806)
Q Consensus 129 ~~~~ 132 (806)
....
T Consensus 83 ~~~~ 86 (93)
T 2cqh_A 83 KKLR 86 (93)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6543
No 62
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=131.96 Aligned_cols=79 Identities=24% Similarity=0.338 Sum_probs=73.1
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
....+.++|||+||+ ..+++++|+++|++||+|++|+|..+ ++||||+|.+.++|++|++.|||..|.|+.|+|
T Consensus 11 ~~~~~~~~l~v~nlp-~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLE-ARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCC-CCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 334567899999999 99999999999999999999999876 689999999999999999999999999999999
Q ss_pred EeecC
Q 037075 124 CFAKS 128 (806)
Q Consensus 124 efAKs 128 (806)
.|+++
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99975
No 63
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.60 E-value=4.4e-16 Score=136.39 Aligned_cols=77 Identities=18% Similarity=0.313 Sum_probs=69.9
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCC-CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhC-CCeeCCCeEEEEe
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFG-EIEKITVFPG------RSYAFVQFRSIISACRAKETLQ-GKLFGNPRVHICF 125 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FG-eI~~VrI~~d------KGyAFVeF~s~EdAekAleaLn-G~~I~GrrIrVef 125 (806)
|++|||+||+ .++||++|+++|++|| +|++|+|+.+ ||||||+|.+.++|++|++.|+ +..|+|+.|+|+|
T Consensus 1 S~~i~v~nLp-~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLP-QAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCC-SSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 5799999999 9999999999999999 8999998764 7899999999999999999885 5679999999999
Q ss_pred ecCCCC
Q 037075 126 AKSEAG 131 (806)
Q Consensus 126 AKs~~~ 131 (806)
|++...
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 987543
No 64
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.7e-15 Score=133.58 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=75.0
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCee--------EEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCe
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIE--------KITVFPG------RSYAFVQFRSIISACRAKETLQGKL 115 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~--------~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~ 115 (806)
...++++|||+||+ .++++++|+++|++||.|. .|+|+.+ +|||||+|.+.++|++|++.|||..
T Consensus 11 ~~~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 11 EDSDNSAIYVQGLN-DSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCEEEEECCC-TTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEEcCCC-CCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 34567899999999 9999999999999999999 6888765 6899999999999999999999999
Q ss_pred eCCCeEEEEeecCCCCC
Q 037075 116 FGNPRVHICFAKSEAGA 132 (806)
Q Consensus 116 I~GrrIrVefAKs~~~~ 132 (806)
|.|+.|+|.|++.....
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999886654
No 65
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=3.8e-15 Score=131.71 Aligned_cols=79 Identities=25% Similarity=0.352 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEecCCCC-CCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 49 KNAEPSEVLWIGFPALL-KVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~-~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
....++++|||+||+ . ++++++|+++|++||.|.+|++ .+|||||+|.+.++|++|++.|+|..++|+.|+|+|++
T Consensus 17 ~~~~~~~~l~V~nLp-~~~~t~~~L~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLP-LKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp --CCTTCEEEEESCC-SSCCCHHHHHHHHGGGSCEEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCCCEEEEeCCC-cccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 344678999999999 8 9999999999999999999999 58999999999999999999999999999999999998
Q ss_pred CCC
Q 037075 128 SEA 130 (806)
Q Consensus 128 s~~ 130 (806)
...
T Consensus 94 ~~~ 96 (97)
T 2xnq_A 94 SNA 96 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
No 66
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.4e-15 Score=131.45 Aligned_cols=79 Identities=18% Similarity=0.339 Sum_probs=72.7
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
..+..+|||+||+ .++++++|+++|+.|| |++|+|+.+ +|||||+|.+.++|++|+ .|+|..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 12 KSPPYTAFLGNLP-YDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp SSSCEEEEEESCC-SSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCEEEEeCCC-CcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 3567899999999 9999999999999999 999998754 689999999999999999 99999999999999
Q ss_pred EeecCCCCC
Q 037075 124 CFAKSEAGA 132 (806)
Q Consensus 124 efAKs~~~~ 132 (806)
.|++.....
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999886654
No 67
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=3.3e-15 Score=127.24 Aligned_cols=77 Identities=19% Similarity=0.275 Sum_probs=71.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeC-------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFP-------GRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~-------dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
.+++|||+||+ .++++++|+++|++||.|.+|.+.. .+|||||+|.+.++|++|++.|||..|+|+.|+|.|
T Consensus 3 ~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLT-RNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCC-TTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCC-CCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 45789999999 9999999999999999999999864 478999999999999999999999999999999999
Q ss_pred ecCCC
Q 037075 126 AKSEA 130 (806)
Q Consensus 126 AKs~~ 130 (806)
+++.+
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 98754
No 68
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.60 E-value=2.1e-15 Score=134.78 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=72.0
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
-.+..||||||+ ..+||++|+++|.+||+|.+|++...||||||+|.+.++|++|++.|||..+.|+.|+|.+|.
T Consensus 5 ~~~~wL~VgNL~-~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLT-AQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCC-TTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCC-ccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 347789999999 999999999999999999999999999999999999999999999999999999999999994
No 69
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.60 E-value=3e-15 Score=133.59 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=73.9
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..++++|||+||+ .++++++|+++|+.||.|++|++..+ +|||||+|.+.++|++|++.|+|..|+|+.|+|.
T Consensus 23 ~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 23 SVEGWILFVTSIH-EEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp BTTBEEEEEESCC-TTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4567899999999 99999999999999999999999765 6999999999999999999999999999999999
Q ss_pred eecCCC
Q 037075 125 FAKSEA 130 (806)
Q Consensus 125 fAKs~~ 130 (806)
|++...
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 998754
No 70
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=132.06 Aligned_cols=81 Identities=21% Similarity=0.436 Sum_probs=74.5
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCee-EEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCe--
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIE-KITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPR-- 120 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~-~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~Grr-- 120 (806)
...++++|||+||+ .+++|++|+++|++||.|+ +|+|+.+ ++||||+|.+.++|++|++.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 5 SSGMAASLWMGDLE-PYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCSSSSEEEECSCC-TTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCccEEEEeCCC-CCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 34578999999999 9999999999999999999 9999876 389999999999999999999999999999
Q ss_pred --EEEEeecCCCC
Q 037075 121 --VHICFAKSEAG 131 (806)
Q Consensus 121 --IrVefAKs~~~ 131 (806)
|+|.|++....
T Consensus 84 ~~l~v~~a~~~~~ 96 (99)
T 2div_A 84 KRFKLNYATYSGP 96 (99)
T ss_dssp EECCEEETTCCSS
T ss_pred eeEEEeecCCCCC
Confidence 99999987543
No 71
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=136.82 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=72.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~ 130 (806)
.++|||+||+ .++++++|+++|++||.|.+|.|...++||||+|.+.++|++|++.|||..|.|+.|+|+|++...
T Consensus 10 ~~~l~V~nLp-~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 10 KTVILAKNLP-AGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEESCC-TTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 5799999999 999999999999999999999999999999999999999999999999999999999999998743
No 72
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7e-15 Score=132.59 Aligned_cols=82 Identities=23% Similarity=0.354 Sum_probs=74.1
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
....+.++|||+||+ .+++|++|+++|++||.|++|+|+.+ ++||||+|.+.++|++|++.|++ .|.|+.|+
T Consensus 12 ~~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLP-YHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCSCSSSEEEEECCC-SSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred cCCCCCCEEEEeCCC-CCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 334567899999999 99999999999999999999999875 67999999999999999999999 89999999
Q ss_pred EEeecCCCCC
Q 037075 123 ICFAKSEAGA 132 (806)
Q Consensus 123 VefAKs~~~~ 132 (806)
|+|++.....
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999875443
No 73
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=135.12 Aligned_cols=80 Identities=23% Similarity=0.430 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
....+.++|||+||+ .++++++|+++|++||+|++|++..+ +|||||+|.+.++|++|++.|+|..|+|+.|+|+
T Consensus 24 ~~~~~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 24 ENKSQPKRLHVSNIP-FRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp SCTTCCCEEEEESCC-TTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCCEEEEECCC-CcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 344567899999999 99999999999999999999999876 7999999999999999999999999999999999
Q ss_pred eecCC
Q 037075 125 FAKSE 129 (806)
Q Consensus 125 fAKs~ 129 (806)
|++..
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99874
No 74
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=3e-15 Score=135.13 Aligned_cols=80 Identities=29% Similarity=0.523 Sum_probs=73.2
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
....++++|||+||+ .++++++|+++|++||.|++|++. +|||||+|.+.++|++|++.|+|..|+|+.|+|+|++.
T Consensus 26 ~~~~~~~~l~V~nLp-~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 26 EGELSNTRLFVRPFP-LDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp --CCSCSEEEECSSC-TTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCCEEEEECCC-CCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 344577899999999 999999999999999999999998 89999999999999999999999999999999999987
Q ss_pred CCC
Q 037075 129 EAG 131 (806)
Q Consensus 129 ~~~ 131 (806)
...
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 553
No 75
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=3.7e-15 Score=133.45 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=72.7
Q ss_pred CCCCcEEEEecCCCCC-CCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 037075 51 AEPSEVLWIGFPALLK-VDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~-vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~ 129 (806)
..++++|||+||+ .+ +++++|+++|++||.|++|++ .++||||+|.+.++|++|++.|+|..|+|+.|+|+|++..
T Consensus 24 ~~~~~~l~V~nl~-~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 24 KSINSRVFIGNLN-TALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TTCSSEEEECSCC-CSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCCcEEEEeCCC-cccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3456899999999 88 999999999999999999999 7899999999999999999999999999999999999865
Q ss_pred CC
Q 037075 130 AG 131 (806)
Q Consensus 130 ~~ 131 (806)
+.
T Consensus 101 ~~ 102 (110)
T 1wf1_A 101 KP 102 (110)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 76
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.59 E-value=5.1e-15 Score=133.62 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=72.5
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
.....++++|||+||+ .++++++|+++|++||+|++|+|..+ +|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 34 ~~~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLP-QEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SCCCCCSEEEEEECSC-TTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3345678999999999 99999999999999999999999865 7899999999999999999999999999999
Q ss_pred EEEeec
Q 037075 122 HICFAK 127 (806)
Q Consensus 122 rVefAK 127 (806)
+|+|+|
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999986
No 77
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=134.73 Aligned_cols=77 Identities=23% Similarity=0.321 Sum_probs=70.0
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCC--eeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCC----eeCC
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGE--IEKITVFPG------RSYAFVQFRSIISACRAKETLQGK----LFGN 118 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGe--I~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~----~I~G 118 (806)
...-++|||+||+ +++||++|+++|++||. |.+|+++++ ||||||+|.+.++|++|++.|||. .|+|
T Consensus 6 ~~~m~tlfV~nL~-~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 6 HHHMDTIILRNIA-PHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SCCCCEEEEESCC-TTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred CCccCEEEEeCCC-CcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3456899999999 99999999999999995 678988765 789999999999999999999997 5899
Q ss_pred CeEEEEeecC
Q 037075 119 PRVHICFAKS 128 (806)
Q Consensus 119 rrIrVefAKs 128 (806)
+.|+|+||++
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999986
No 78
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.7e-15 Score=132.33 Aligned_cols=82 Identities=24% Similarity=0.371 Sum_probs=75.4
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcC-CCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCe-eCCCeEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSP-FGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKL-FGNPRVH 122 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~-FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~-I~GrrIr 122 (806)
+..++.+|||+||+ .++++++|+++|++ ||.|++|+|+.+ ++||||+|.+.++|++|++.|+|.. |+|+.|+
T Consensus 5 ~~~~~~~l~V~nLp-~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLT-PDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCC-TTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCC-CCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 44677899999999 99999999999999 999999999875 7899999999999999999999999 9999999
Q ss_pred EEeecCCCCC
Q 037075 123 ICFAKSEAGA 132 (806)
Q Consensus 123 VefAKs~~~~ 132 (806)
|.|++.....
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999875543
No 79
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=139.86 Aligned_cols=82 Identities=20% Similarity=0.281 Sum_probs=74.9
Q ss_pred CCCCCCCcEEEE--ecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCee-----CCCe
Q 037075 48 DKNAEPSEVLWI--GFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLF-----GNPR 120 (806)
Q Consensus 48 ~~~~~PS~tLfV--GNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I-----~Grr 120 (806)
.....|+++||| |||+ .+++|++|+++|++||+|++|.|..+||||||+|.+.++|++|++.|||..| .|+.
T Consensus 19 ~~~~~pt~~L~V~Ng~L~-~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLG-NGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCCSSCCSEEEEETCTGG-GTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCCCEEEEECCCCC-CCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 334568899999 7799 8999999999999999999999998999999999999999999999999998 6889
Q ss_pred EEEEeecCCC
Q 037075 121 VHICFAKSEA 130 (806)
Q Consensus 121 IrVefAKs~~ 130 (806)
|.|.|++...
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999998643
No 80
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=3e-15 Score=130.22 Aligned_cols=81 Identities=31% Similarity=0.445 Sum_probs=73.8
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHH----HhhcCCCCeeEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILR----KAFSPFGEIEKITVFP---GRSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLr----elFs~FGeI~~VrI~~---dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
+..++++|||+||+ .++++++|+ ++|++||.|.+|++.. .+|||||+|.+.++|++|++.|+|..|+|+.|+
T Consensus 4 ~~~~~~~l~V~nLp-~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 4 ETRPNHTIYINNLN-EKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp --CCCSEEEEESCC-TTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEeCCC-CCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 34678999999999 999999999 9999999999999873 489999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 037075 123 ICFAKSEAG 131 (806)
Q Consensus 123 VefAKs~~~ 131 (806)
|+|++....
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999988653
No 81
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=3.4e-15 Score=139.16 Aligned_cols=82 Identities=28% Similarity=0.408 Sum_probs=75.7
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
.....++++|||+||+ .+++|++|+++|++||+|++|+|+.+ +|||||+|.+.++|++|++.|+|..|+|+.|
T Consensus 40 ~~~~~~~~~l~V~nLp-~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLS-LYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp SSCCCCSSCBCEETCT-TSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3445678999999999 99999999999999999999999864 7899999999999999999999999999999
Q ss_pred EEEeecCCC
Q 037075 122 HICFAKSEA 130 (806)
Q Consensus 122 rVefAKs~~ 130 (806)
+|+|++..+
T Consensus 119 ~V~~a~~~~ 127 (129)
T 2kxn_B 119 RVDFSITKR 127 (129)
T ss_dssp EESCCSSSS
T ss_pred EEEEecCCC
Confidence 999998755
No 82
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.58 E-value=4.7e-15 Score=130.19 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeE--------EEEeCC------CCEEEEEeCCHHHHHHHHHHhCCC
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEK--------ITVFPG------RSYAFVQFRSIISACRAKETLQGK 114 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~--------VrI~~d------KGyAFVeF~s~EdAekAleaLnG~ 114 (806)
....+..+|||+||+ .++++++|+++|++||.|.. |++..+ +|||||+|.+.++|++|++.|+|.
T Consensus 8 ~~~~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGLG-ENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECCC-SSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCC-CCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345678999999999 99999999999999999999 988765 579999999999999999999999
Q ss_pred eeCCCeEEEEeec
Q 037075 115 LFGNPRVHICFAK 127 (806)
Q Consensus 115 ~I~GrrIrVefAK 127 (806)
.|.|+.|+|+||+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999985
No 83
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1e-14 Score=127.90 Aligned_cols=78 Identities=19% Similarity=0.322 Sum_probs=70.5
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEe--CCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVF--PGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~--~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
.+.+++|||+||+ .++++++|+++|+.||.|. ++++ ..++||||+|.+.++|++|++.|||..|+|+.|+|+|++.
T Consensus 16 ~~~~~~l~V~nL~-~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 16 APLAADVYVGNLP-RDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SCCCCEEEEECCC-TTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCEEEEeCCC-CcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4557899999999 9999999999999999996 4444 4489999999999999999999999999999999999987
Q ss_pred CC
Q 037075 129 EA 130 (806)
Q Consensus 129 ~~ 130 (806)
.+
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 84
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=9e-15 Score=129.27 Aligned_cols=80 Identities=18% Similarity=0.345 Sum_probs=72.7
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
...+.++|||+||+ .+++|++|+++|+.|| |++|+|+.+ +|||||+|.+.++|++|+ .|+|..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp-~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 11 PTEPPYTAYVGNLP-FNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CSSSCEEEEEESCC-TTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCeEEEEeCCC-CCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 34567899999999 9999999999999997 999999865 579999999999999999 89999999999999
Q ss_pred EeecCCCCC
Q 037075 124 CFAKSEAGA 132 (806)
Q Consensus 124 efAKs~~~~ 132 (806)
.|++.....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999876543
No 85
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=7.8e-15 Score=132.24 Aligned_cols=80 Identities=13% Similarity=0.217 Sum_probs=73.5
Q ss_pred CCCCcEEEEecCCCCCCCHHHHH---HhhcCCCCeeEEEEeCCC---------CEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 037075 51 AEPSEVLWIGFPALLKVDEVILR---KAFSPFGEIEKITVFPGR---------SYAFVQFRSIISACRAKETLQGKLFGN 118 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLr---elFs~FGeI~~VrI~~dK---------GyAFVeF~s~EdAekAleaLnG~~I~G 118 (806)
....++|||+||+ .+++|++|+ ++|++||+|++|+|..++ |||||+|.+.++|++|++.|||..|+|
T Consensus 12 ~~~~~~l~V~nLp-~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLS-QRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEEEEC-TTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEECCC-CCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 3457789999999 999999999 999999999999998653 699999999999999999999999999
Q ss_pred CeEEEEeecCCCC
Q 037075 119 PRVHICFAKSEAG 131 (806)
Q Consensus 119 rrIrVefAKs~~~ 131 (806)
+.|+|+|+++...
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999988653
No 86
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=127.76 Aligned_cols=82 Identities=16% Similarity=0.172 Sum_probs=70.3
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEe--CCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVF--PGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~--~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
...++++|||+||+ .++++++|+++|++||.|.-+... ..++||||+|.+.++|++|++.|||..|.|+.|+|+|++
T Consensus 11 ~~~~~~~l~V~nLp-~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 11 WSGESKTLVLSNLS-YSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CSCCCSEEEEESCC-TTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCCCEEEEeCCC-CCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 44578999999999 999999999999999988322111 127999999999999999999999999999999999998
Q ss_pred CCCCC
Q 037075 128 SEAGA 132 (806)
Q Consensus 128 s~~~~ 132 (806)
.....
T Consensus 90 ~~~~~ 94 (101)
T 2fc9_A 90 PRGSP 94 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86543
No 87
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.57 E-value=6.1e-15 Score=132.96 Aligned_cols=81 Identities=26% Similarity=0.455 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
....++++|||+||+ ..+++++|+++|++||.|.+|++..+ +|||||+|.+.++|++|++.|+|..|.|+.|+
T Consensus 21 ~~~~~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLH-FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CSCSSCEEEEEECCC-SSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cCCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 334567899999999 99999999999999999999999764 68999999999999999999999999999999
Q ss_pred EEeecCCC
Q 037075 123 ICFAKSEA 130 (806)
Q Consensus 123 VefAKs~~ 130 (806)
|+|+++..
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998753
No 88
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.57 E-value=7.8e-15 Score=131.86 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=73.6
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG---RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d---KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
..++++|||+||+ .++++++|+++|+.||.|.+|.+..+ +|||||+|.+.++|++|++.|||..|+|+.|+|+|++
T Consensus 5 ~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 5 PEVNRILYIRNLP-YKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TTCCSEEEEESCC-TTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4578899999999 99999999999999999999999765 7899999999999999999999999999999999998
Q ss_pred CCC
Q 037075 128 SEA 130 (806)
Q Consensus 128 s~~ 130 (806)
...
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 643
No 89
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.57 E-value=6.4e-15 Score=138.74 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
....+.++|||+||+ .++++++|+++|++||.|++|++..+ +|||||+|.+.++|++|++.|||..|+|+.|+|+|++
T Consensus 68 ~~~~~~~~l~V~nl~-~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLG-NNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp SSSTTSCEEEEESCC-SCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred cCCCCCCEEEEeCCC-CCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 344578899999999 99999999999999999999999988 9999999999999999999999999999999999998
Q ss_pred CCC
Q 037075 128 SEA 130 (806)
Q Consensus 128 s~~ 130 (806)
+.+
T Consensus 147 ~~~ 149 (150)
T 2i2y_A 147 GEK 149 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 90
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=6.4e-15 Score=138.06 Aligned_cols=82 Identities=27% Similarity=0.277 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHH----HhhcCCCCeeEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILR----KAFSPFGEIEKITVFP---GRSYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLr----elFs~FGeI~~VrI~~---dKGyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
....|+++|||+||+ ..+++++|+ ++|++||.|++|.+.. .||||||+|.+.++|++|++.|||..|.|+.|
T Consensus 24 ~~~~p~~~LfV~nL~-~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 24 PHTEPSQVVLITNIN-PEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CCCSCCSEEEEESCC-TTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCCCEEEEeCCC-CCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 345678999999999 999999876 6999999999999864 38999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 037075 122 HICFAKSEAG 131 (806)
Q Consensus 122 rVefAKs~~~ 131 (806)
+|.|++....
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987544
No 91
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=130.35 Aligned_cols=82 Identities=26% Similarity=0.323 Sum_probs=73.5
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCe----eEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEI----EKITVFPG--RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI----~~VrI~~d--KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
...++++|||+||+ .++++++|+++|+.||.| ..+++..+ +|||||+|.+.++|++|++.|+|..|.|+.|+|
T Consensus 21 ~~~~~~~l~V~nLp-~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 21 PGEPNKVLYLKNLS-PRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCSCCSEEEEECCC-TTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCEEEEeCCC-CCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34578999999999 999999999999999998 56666544 799999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 037075 124 CFAKSEAGA 132 (806)
Q Consensus 124 efAKs~~~~ 132 (806)
.|++.....
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpx_A 100 EFGKNKKQR 108 (115)
T ss_dssp EECCCCSCC
T ss_pred EEccCCCCC
Confidence 999986654
No 92
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.56 E-value=3.2e-14 Score=129.92 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=75.2
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
...++++|||+||+ .++++++|+++|++||.|++|+|..+ +|||||+|.+.++|++|++.|+|..|+|+.|+|+
T Consensus 31 ~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLD-FGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCC-SSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44678899999999 99999999999999999999999874 7899999999999999999999999999999999
Q ss_pred eecCCCC
Q 037075 125 FAKSEAG 131 (806)
Q Consensus 125 fAKs~~~ 131 (806)
||.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9987554
No 93
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=129.53 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=73.5
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCC-eeEEEEe-------CCCCEEEEEeCCHHHHHHHHHHhC--CCeeCCCe
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGE-IEKITVF-------PGRSYAFVQFRSIISACRAKETLQ--GKLFGNPR 120 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGe-I~~VrI~-------~dKGyAFVeF~s~EdAekAleaLn--G~~I~Grr 120 (806)
..+.++|||+||+ .++++++|+++|+.||. |++|.++ ..+|||||+|.+.++|++|++.|+ +..+.|+.
T Consensus 5 s~~~~~l~V~nLp-~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 5 SSGNCRLFIGGIP-KMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCSEEEEEECCC-TTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred ccCCCEEEEeCCC-CcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 3467899999999 99999999999999998 9999998 348999999999999999999996 58999999
Q ss_pred EEEEeecCCCCC
Q 037075 121 VHICFAKSEAGA 132 (806)
Q Consensus 121 IrVefAKs~~~~ 132 (806)
|+|.|+++....
T Consensus 84 l~V~~a~~~~~~ 95 (109)
T 2dis_A 84 IAVDWAEPEIDV 95 (109)
T ss_dssp CEEEESCSSCST
T ss_pred EEEEEcCCCCCc
Confidence 999999886553
No 94
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.56 E-value=3.1e-15 Score=132.69 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=70.8
Q ss_pred CCCcEEEEecCCCC------CCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCC-
Q 037075 52 EPSEVLWIGFPALL------KVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGN- 118 (806)
Q Consensus 52 ~PS~tLfVGNLp~~------~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~G- 118 (806)
..+++|||+||| . ++++++|+++|++||.|++|+|+.+ ||||||+|.+.++|++|++.|||..|.|
T Consensus 4 ~~~~~vfV~nLp-~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAP-VIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCC-CCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCC-cCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 346899999999 9 9999999999999999999998754 7999999999999999999999999999
Q ss_pred CeEEEEeecC
Q 037075 119 PRVHICFAKS 128 (806)
Q Consensus 119 rrIrVefAKs 128 (806)
+.|+|.|+++
T Consensus 83 r~l~V~~a~~ 92 (100)
T 3ns6_A 83 HRLFLYTMKD 92 (100)
T ss_dssp CBCEEEESHH
T ss_pred eEEEEEECch
Confidence 9999999975
No 95
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.6e-15 Score=127.91 Aligned_cols=77 Identities=22% Similarity=0.209 Sum_probs=71.4
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..++++|||+||+ .++++++|+++|++||.|.+|++..+ +|||||+|.+.++|++|++.|||..|.|+.|+|.
T Consensus 2 ~~~~~~l~v~nlp-~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 2 SSGSSGLYIRGLQ-PGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp CCCCCEEEEESCC-TTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred CCCCcEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 3578899999999 99999999999999999999999876 7899999999999999999999999999999988
Q ss_pred eecC
Q 037075 125 FAKS 128 (806)
Q Consensus 125 fAKs 128 (806)
|+++
T Consensus 81 ~~~s 84 (85)
T 1x4e_A 81 GPSS 84 (85)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 96
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=5.6e-15 Score=130.77 Aligned_cols=83 Identities=16% Similarity=0.264 Sum_probs=75.1
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
.....+.++|||+||+ .++++++|+++|++||+|++|+|+.+ ++||||+|.+.++|++|++. +|..|+|+.|
T Consensus 10 ~~~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLD-WSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCCSSSSSEECCBSCC-TTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred cCCCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 3445678899999999 99999999999999999999999876 47999999999999999999 9999999999
Q ss_pred EEEeecCCCCC
Q 037075 122 HICFAKSEAGA 132 (806)
Q Consensus 122 rVefAKs~~~~ 132 (806)
+|.|++.....
T Consensus 88 ~V~~a~~~~~~ 98 (105)
T 2dh8_A 88 DPKPCTPRGMQ 98 (105)
T ss_dssp BCCCSCCSSCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 97
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.55 E-value=1.8e-14 Score=132.64 Aligned_cols=78 Identities=29% Similarity=0.467 Sum_probs=71.8
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
.....+.++|||+||+ .++++++|+++|++||.|++|++..+ +|||||+|.+.++|++|++.|+|..|.|+.|
T Consensus 57 ~~~~~~~~~l~v~nlp-~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLA-EEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp CSSCSSCCEEEEECCC-TTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCcEEEEEeCC-CCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3445678999999999 99999999999999999999999765 7999999999999999999999999999999
Q ss_pred EEEee
Q 037075 122 HICFA 126 (806)
Q Consensus 122 rVefA 126 (806)
+|.||
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99986
No 98
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.55 E-value=2.7e-15 Score=130.04 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=65.5
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCC--CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFG--EIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FG--eI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
.+|||+||+ .+++|++|+++|++|| .|.+|+++.+ +|||||+|.+.++|++|++.|||..|+|+.|+|.++
T Consensus 2 ~~l~V~nL~-~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLT-WWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCC-TTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCC-CCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 379999999 9999999999999999 9999998765 579999999999999999999999999999999999
Q ss_pred cCCCC
Q 037075 127 KSEAG 131 (806)
Q Consensus 127 Ks~~~ 131 (806)
++...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87543
No 99
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=126.79 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=68.9
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
...++++|||+||+ .++++++|+++|+.|+.| +++.+ ++||||+|.+.++|++|++.|+|..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp-~~~t~~~l~~~F~~~~~~---~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 11 RSQPSKTLFVKGLS-EDTTEETLKESFDGSVRA---RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSCCCSSEEEECCC-TTCCHHHHHHTSTTCSEE---EEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCC-CccCHHHHHHHhcCCeEE---EEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34577899999999 999999999999988644 44433 589999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 037075 124 CFAKSEAGA 132 (806)
Q Consensus 124 efAKs~~~~ 132 (806)
+|+++....
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999986654
No 100
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.2e-14 Score=127.69 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=71.7
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCee--------C
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLF--------G 117 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I--------~ 117 (806)
..+.++|||+||+ .++++++|+++|+.||.|+.|+|..+ +|||||+|.+.++|++|++.|||..| .
T Consensus 22 ~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLP-LSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCC-TTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3467899999999 99999999999999999999999876 68999999999999999999999999 5
Q ss_pred CCeEEEEeecCC
Q 037075 118 NPRVHICFAKSE 129 (806)
Q Consensus 118 GrrIrVefAKs~ 129 (806)
++.|+|.|+++.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999864
No 101
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.54 E-value=1.1e-14 Score=124.45 Aligned_cols=74 Identities=15% Similarity=0.359 Sum_probs=69.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
.++|||+||+ .++++++|+++|+.||.|.+|++..+ +|||||+|.+.++|++|+ .|+|..|.|+.|+|.+++
T Consensus 6 ~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVD-YGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCC-TTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999 99999999999999999999999865 789999999999999999 999999999999999998
Q ss_pred CC
Q 037075 128 SE 129 (806)
Q Consensus 128 s~ 129 (806)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 102
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.3e-15 Score=131.73 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=71.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
.+++|||+||+ .++++++|+++|+.||.|++|+|+.+ +|||||+|.+.++|++|+ .|+|..|.|+.|+|.|+
T Consensus 24 ~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLA-ARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCC-TTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCC-CCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 46799999999 99999999999999999999999754 689999999999999999 99999999999999999
Q ss_pred cCCCC
Q 037075 127 KSEAG 131 (806)
Q Consensus 127 Ks~~~ 131 (806)
+....
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87543
No 103
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.1e-15 Score=129.83 Aligned_cols=78 Identities=21% Similarity=0.352 Sum_probs=72.8
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
++++|||+||+ .++++++|+++|+.||.|..|++..+ +|||||+|.+.++|++|++.|+|..|.|+.|+|.|+
T Consensus 7 ~~~~l~V~nlp-~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIP-YEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCC-TTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCC-CcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45789999999 99999999999999999999999865 689999999999999999999999999999999999
Q ss_pred cCCCC
Q 037075 127 KSEAG 131 (806)
Q Consensus 127 Ks~~~ 131 (806)
+....
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 87654
No 104
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=3.8e-14 Score=132.91 Aligned_cols=79 Identities=25% Similarity=0.411 Sum_probs=71.2
Q ss_pred CCCCcE--EEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCE-EEEEeCCHHHHHHHHHHhCCCeeCC--CeEEEEe
Q 037075 51 AEPSEV--LWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSY-AFVQFRSIISACRAKETLQGKLFGN--PRVHICF 125 (806)
Q Consensus 51 ~~PS~t--LfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGy-AFVeF~s~EdAekAleaLnG~~I~G--rrIrVef 125 (806)
.+|+++ |||+||+ +.+++++|+++|++||+|++|+|+...|| |||+|.+.++|++|++.|||..|.| +.|+|+|
T Consensus 20 ~~ps~vl~l~V~NL~-~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPL-YPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCCCSEEEEEEESCC-SCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCCCcEEEEEEcCcC-CCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 356666 4799999 99999999999999999999999876796 9999999999999999999999987 5899999
Q ss_pred ecCCC
Q 037075 126 AKSEA 130 (806)
Q Consensus 126 AKs~~ 130 (806)
|+...
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98754
No 105
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=7.9e-15 Score=128.04 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=70.3
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
....++|||+||+ .++++++|+++|++||.|+.++++.+ ++||||+|.+.++|++|++.|||..|.|+.|+|+
T Consensus 12 ~~~~~~l~v~nLp-~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMP-FTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCC-TTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3456899999999 99999999999999999987665543 6899999999999999999999999999999999
Q ss_pred eecCC
Q 037075 125 FAKSE 129 (806)
Q Consensus 125 fAKs~ 129 (806)
|++..
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 99764
No 106
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.54 E-value=1.7e-14 Score=138.53 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=73.3
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..++++|||+||+ ..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||+.|||..|.|+.|+|.
T Consensus 69 ~~~~~~l~V~nLp-~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 69 SVEGWILFVTSIH-EEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CC-CEEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3567899999999 99999999999999999999999876 6899999999999999999999999999999999
Q ss_pred eecCCCCC
Q 037075 125 FAKSEAGA 132 (806)
Q Consensus 125 fAKs~~~~ 132 (806)
|++.....
T Consensus 148 ~a~~~~~~ 155 (165)
T 1rk8_A 148 WCFVKGPK 155 (165)
T ss_dssp ESEECC--
T ss_pred EecCCCCC
Confidence 99876543
No 107
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.3e-14 Score=129.23 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=72.9
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
.+.++|||+||+ .++++++|+++|+.||.|+.|+|+.+ +|||||+|.+.++|++|++. +|..|+|+.|+|.|
T Consensus 25 ~~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGLS-FETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECCT-TCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 346899999999 99999999999999999999999875 68999999999999999998 99999999999999
Q ss_pred ecCCCCC
Q 037075 126 AKSEAGA 132 (806)
Q Consensus 126 AKs~~~~ 132 (806)
++.....
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9886654
No 108
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.53 E-value=2.6e-14 Score=134.97 Aligned_cols=80 Identities=19% Similarity=0.339 Sum_probs=74.3
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..+..+|||+||+ .++++++|+++|+.||.|++|+|..+ +|||||+|.+.++|++|++.|||..|.|+.|+|.
T Consensus 67 ~~~~~~l~v~nl~-~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 67 VEGMTSLKVDNLT-YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCBCCEEEEESCC-TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3567899999999 99999999999999999999999865 6899999999999999999999999999999999
Q ss_pred eecCCCC
Q 037075 125 FAKSEAG 131 (806)
Q Consensus 125 fAKs~~~ 131 (806)
|++..+.
T Consensus 146 ~a~~~~~ 152 (158)
T 2kn4_A 146 MARYGRP 152 (158)
T ss_dssp EECCSSC
T ss_pred ECCCCCC
Confidence 9997654
No 109
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.53 E-value=5.8e-15 Score=127.94 Aligned_cols=76 Identities=18% Similarity=0.114 Sum_probs=68.1
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
++.++|||+||+ .++++++|+++|++||.|..++++.+ ++||||+|.+.++|++|++.|||..|.|+.|+|++
T Consensus 13 ~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMP-FTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCC-TTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 456899999999 99999999999999999987766542 68999999999999999999999999999999999
Q ss_pred ecC
Q 037075 126 AKS 128 (806)
Q Consensus 126 AKs 128 (806)
+++
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 875
No 110
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.2e-14 Score=122.87 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=71.8
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
.....+|||+||+ .++++++|+++|+.| .|.+|+|+.+ +|||||+|.+.++|++|++ |+|..|+|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp-~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAP-FNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCC-SSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCC-CCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3456899999999 999999999999999 9999999875 6899999999999999999 999999999999999
Q ss_pred ecCCCC
Q 037075 126 AKSEAG 131 (806)
Q Consensus 126 AKs~~~ 131 (806)
++....
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 987643
No 111
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.53 E-value=1.2e-14 Score=133.35 Aligned_cols=78 Identities=12% Similarity=-0.077 Sum_probs=71.5
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCC-CeeEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFG-EIEKITVFP--GRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FG-eI~~VrI~~--dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
.....+|||+||+ +++++++|+++|++|| +|..|+|.. .+|||||+|.+.++|++|++.|||..|+|+.|+|++++
T Consensus 25 p~~~~~l~VgnLp-~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 25 PAKRYRITMKNLP-EGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCCEEEEEECSS-CCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCCEEEEECCC-CCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4456799999999 9999999999999999 999999863 48999999999999999999999999999999999997
Q ss_pred CC
Q 037075 128 SE 129 (806)
Q Consensus 128 s~ 129 (806)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 112
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=134.89 Aligned_cols=79 Identities=18% Similarity=0.316 Sum_probs=72.5
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeE--EEEeCC------CCEEEEEeCCHHHHHHHHHHhCCC----eeCC
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEK--ITVFPG------RSYAFVQFRSIISACRAKETLQGK----LFGN 118 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~--VrI~~d------KGyAFVeF~s~EdAekAleaLnG~----~I~G 118 (806)
..++++|||+||+ .+++|++|+++|++||.|.. |+|+.+ ||||||+|.+. +|++|++.|||. .|+|
T Consensus 20 ~~~~~~lfV~nL~-~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNLN-PHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSCC-TTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3567899999999 99999999999999999966 888765 69999999999 999999999999 9999
Q ss_pred CeEEEEeecCCCC
Q 037075 119 PRVHICFAKSEAG 131 (806)
Q Consensus 119 rrIrVefAKs~~~ 131 (806)
+.|+|+|++..+.
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987544
No 113
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=1.7e-14 Score=124.47 Aligned_cols=76 Identities=12% Similarity=0.081 Sum_probs=71.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~ 130 (806)
.+++|||+||+ .+++|++|+++|++| +|.+|++...+|||||+|.+.++|++|++.|||..++|+.|+|+|++...
T Consensus 4 ~~~~l~V~nLp-~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLP-QDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCC-SSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCC-CCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 45789999999 999999999999999 99999998779999999999999999999999999999999999997654
No 114
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.53 E-value=1.5e-14 Score=131.66 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=71.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
+.++|||+||+ .++++++|+++|++||.|++|++..+ +|||||+|.+.++|++|+ .|+|..|+|+.|+|+|+
T Consensus 35 ~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVD-YGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEEC-TTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 46799999999 99999999999999999999999764 789999999999999999 89999999999999999
Q ss_pred cCCCC
Q 037075 127 KSEAG 131 (806)
Q Consensus 127 Ks~~~ 131 (806)
+....
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 87544
No 115
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.1e-14 Score=124.21 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
....+.++|||+||+ .++++++|+++|+.||.|+.|+|+.+ +|||||+|.+.++|++|++ ++..|+|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLP-WKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp CCCCCCCCEEEESCC-SSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CccCCCCEEEEEcCC-CcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 334567899999999 99999999999999999999999875 5799999999999999998 57899999999
Q ss_pred EEeecCCCCC
Q 037075 123 ICFAKSEAGA 132 (806)
Q Consensus 123 VefAKs~~~~ 132 (806)
|.|++.....
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999886554
No 116
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=3.4e-14 Score=131.20 Aligned_cols=78 Identities=27% Similarity=0.440 Sum_probs=72.8
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~ 130 (806)
..++++|||+|+ ++++++|+++|++||.|.+|++...+|||||+|.+.++|++|++.|+|..|+|+.|+|.|++...
T Consensus 36 ~~~~~~lfVgnl---~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 36 PRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCEEEEECS---SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCEEEEcCC---CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 457889999996 49999999999999999999999889999999999999999999999999999999999998765
Q ss_pred C
Q 037075 131 G 131 (806)
Q Consensus 131 ~ 131 (806)
.
T Consensus 113 ~ 113 (121)
T 2bz2_A 113 M 113 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 117
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.3e-14 Score=129.07 Aligned_cols=75 Identities=19% Similarity=0.187 Sum_probs=70.2
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
...++|||+||+ .++|+++|+++|++||.|.+|+|..+ ||||||+|.+.++|++|++ ++|..|+|+.|+|.|+
T Consensus 9 ~~~~~lfV~~Lp-~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFP-TDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCC-TTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCC-CCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 456789999999 99999999999999999999999874 7999999999999999999 9999999999999998
Q ss_pred cC
Q 037075 127 KS 128 (806)
Q Consensus 127 Ks 128 (806)
+.
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 118
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=2.6e-14 Score=124.27 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=70.8
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG--RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d--KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
..++++|||+||+ .++++++|+++|+.||.|..| ...+ +|||||+|.+.++|++|++.|+|..|+|+.|+|.|+++
T Consensus 13 ~~~~~~l~V~nL~-~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 13 VRAARTLLAKNLS-FNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTGGGEEEEESCC-SSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 3467899999999 999999999999999999887 2222 78999999999999999999999999999999999987
Q ss_pred CCC
Q 037075 129 EAG 131 (806)
Q Consensus 129 ~~~ 131 (806)
...
T Consensus 91 ~~~ 93 (96)
T 1fjc_A 91 KGG 93 (96)
T ss_dssp SCC
T ss_pred CCC
Confidence 554
No 119
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.51 E-value=3.7e-14 Score=134.40 Aligned_cols=79 Identities=28% Similarity=0.332 Sum_probs=70.1
Q ss_pred CCCc--EEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-CCE-EEEEeCCHHHHHHHHHHhCCCeeCC--CeEEEEe
Q 037075 52 EPSE--VLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-RSY-AFVQFRSIISACRAKETLQGKLFGN--PRVHICF 125 (806)
Q Consensus 52 ~PS~--tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-KGy-AFVeF~s~EdAekAleaLnG~~I~G--rrIrVef 125 (806)
.|++ .|||+||+ +.+||++|+++|++||+|.+|+|+.. ++| |||+|.+.++|++|++.|||..|.| +.|+|+|
T Consensus 24 ~ps~VL~I~V~NL~-~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 24 GQSPVLRIIVENLF-YPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp -CCSEEEEEEESCC-SCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred CCCceEEEEECCCC-CCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3454 45699999 99999999999999999999998764 677 9999999999999999999999988 8899999
Q ss_pred ecCCCC
Q 037075 126 AKSEAG 131 (806)
Q Consensus 126 AKs~~~ 131 (806)
++...-
T Consensus 103 ak~~~l 108 (130)
T 3zzy_A 103 SKLTSL 108 (130)
T ss_dssp CSCSSC
T ss_pred cCCCce
Confidence 997543
No 120
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=5.9e-14 Score=122.29 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=68.9
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCC-EEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRS-YAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKG-yAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~ 129 (806)
...+++|||+||+ .+++|++|+++|+.||.|.+|.+....+ ||||+|.+.++|++|++ |+|..|+|+.|+|.++...
T Consensus 5 ~~~~~~l~V~nl~-~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 5 SSGLRSVFVSGFP-RGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp CTTCCEEEEECCC-TTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred cCCCCEEEEECCC-CCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 3456899999999 9999999999999999999984433222 99999999999999999 9999999999999998765
Q ss_pred CC
Q 037075 130 AG 131 (806)
Q Consensus 130 ~~ 131 (806)
..
T Consensus 83 ~~ 84 (94)
T 2e5g_A 83 EF 84 (94)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 121
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.51 E-value=3.7e-14 Score=127.81 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=69.7
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..+.++|||+||+ .+++|++|+++|+.||.|++|+|..+ +|||||+|.+.++|++|++.+ |..|+|+.|+|.
T Consensus 22 ~~~~~~lfV~nLp-~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 22 GSSGCKMFIGGLS-WQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp ----CCEEEESCC-TTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3467899999999 99999999999999999999999875 689999999999999999986 599999999999
Q ss_pred eecCCCC
Q 037075 125 FAKSEAG 131 (806)
Q Consensus 125 fAKs~~~ 131 (806)
|++....
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987554
No 122
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.51 E-value=4e-14 Score=121.02 Aligned_cols=75 Identities=19% Similarity=0.297 Sum_probs=68.4
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
...+.++|||+||+ .++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|++|++ ++|..|+|+.|+|
T Consensus 7 ~~~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGLS-WDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECCC-TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCEEEEeCCC-CCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 34567899999999 99999999999999999999999865 6799999999999999995 5888999999999
Q ss_pred Eee
Q 037075 124 CFA 126 (806)
Q Consensus 124 efA 126 (806)
.+|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 123
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=1.2e-15 Score=137.80 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=74.2
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeE--------EEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCee
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEK--------ITVFPG------RSYAFVQFRSIISACRAKETLQGKLF 116 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~--------VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I 116 (806)
..++++|||+||+ .++++++|+++|++||.|.. |+|..+ +|||||+|.+.++|++|++.|+|..|
T Consensus 4 ~~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLG-ENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567899999999 99999999999999999998 777755 68999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCC
Q 037075 117 GNPRVHICFAKSEAGA 132 (806)
Q Consensus 117 ~GrrIrVefAKs~~~~ 132 (806)
.|+.|+|+|++.....
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999886654
No 124
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.51 E-value=3.6e-14 Score=129.04 Aligned_cols=74 Identities=11% Similarity=0.070 Sum_probs=66.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCe-----EEEEeec
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPR-----VHICFAK 127 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~Grr-----IrVefAK 127 (806)
...+|||+||+ .+++|++|+++|++||+|+.|.|+.+ +||||+|.+.++|++||+.|||..|+|+. |+|..++
T Consensus 15 ~~~~l~V~nLp-~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLP-PSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECC-SSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 35789999999 99999999999999999999999877 99999999999999999999999999999 6666655
Q ss_pred C
Q 037075 128 S 128 (806)
Q Consensus 128 s 128 (806)
.
T Consensus 93 ~ 93 (115)
T 3beg_B 93 P 93 (115)
T ss_dssp -
T ss_pred C
Confidence 4
No 125
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.51 E-value=3.5e-14 Score=126.80 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=70.5
Q ss_pred CCCcEEEEecCCCCCC------CHHHHHHhhcCCCCeeEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCeeCCC-e
Q 037075 52 EPSEVLWIGFPALLKV------DEVILRKAFSPFGEIEKITVFP----GRSYAFVQFRSIISACRAKETLQGKLFGNP-R 120 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~v------TEedLrelFs~FGeI~~VrI~~----dKGyAFVeF~s~EdAekAleaLnG~~I~Gr-r 120 (806)
..+++|||+||+ ..+ ++++|+++|++||.|.+|+|.. .+|||||+|.+.++|++|++.|||..|.|+ .
T Consensus 13 ~~~~~l~V~nLp-~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNVP-QVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESCC-CCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCCC-cchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 346899999999 888 7899999999999999999874 279999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 037075 121 VHICFAKSE 129 (806)
Q Consensus 121 IrVefAKs~ 129 (806)
|+|.|++..
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999999753
No 126
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=127.60 Aligned_cols=77 Identities=18% Similarity=0.348 Sum_probs=68.7
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
....++|||+||+ .++++++|+++|+.|| |.+|+|..+ +|||||+|.+.++|++|+ .|+|..|+|+.|+|
T Consensus 16 ~~~~~~l~V~nLp-~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNLP-YDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCCS-SCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCCC-CCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 3457899999999 9999999999999999 999998764 689999999999999999 89999999999999
Q ss_pred EeecCCC
Q 037075 124 CFAKSEA 130 (806)
Q Consensus 124 efAKs~~ 130 (806)
+|++...
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998743
No 127
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.50 E-value=2.5e-15 Score=152.94 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=69.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCC--CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFG--EIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FG--eI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..++|||+||+ .++||++|+++|++|| +|++|+|+.+ ||||||+|.+.++|++||+.|||..|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~-~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLT-WWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCC-TTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCC-CCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 46789999999 9999999999999999 9999999876 5899999999999999999999999999999999
Q ss_pred eecC
Q 037075 125 FAKS 128 (806)
Q Consensus 125 fAKs 128 (806)
|++.
T Consensus 146 ~a~~ 149 (229)
T 3q2s_C 146 PVNK 149 (229)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 9864
No 128
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.50 E-value=1.6e-14 Score=135.35 Aligned_cols=81 Identities=19% Similarity=0.336 Sum_probs=74.4
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..++++|||+||+ .++++++|+++|++||.|+.|+|..+ +|||||+|.+.++|++|++.|+|..|.|+.|+|.
T Consensus 44 ~~~~~~l~V~nLp-~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 44 VEGMTSLKVDNLT-YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp GGGCCCEEEECCC-SSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3457899999999 99999999999999999999999765 6899999999999999999999999999999999
Q ss_pred eecCCCCC
Q 037075 125 FAKSEAGA 132 (806)
Q Consensus 125 fAKs~~~~ 132 (806)
|++..+..
T Consensus 123 ~a~~~~~~ 130 (135)
T 2lea_A 123 MARYGRPP 130 (135)
T ss_dssp ECCCCCCC
T ss_pred ECCCCCCC
Confidence 99986543
No 129
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.50 E-value=3.6e-14 Score=120.80 Aligned_cols=72 Identities=19% Similarity=0.398 Sum_probs=68.5
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCC----C-------CeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCe
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPF----G-------EIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPR 120 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~F----G-------eI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~Grr 120 (806)
.++++|||+||+ .++++++|+++|+.| | .|.+|++..++|||||+|.+.++|++|+ .|||..++|+.
T Consensus 4 ~~~~~l~V~nLp-~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIP-FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCC-TTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 467899999999 999999999999999 8 9999999999999999999999999999 99999999999
Q ss_pred EEEEe
Q 037075 121 VHICF 125 (806)
Q Consensus 121 IrVef 125 (806)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99973
No 130
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.7e-14 Score=132.16 Aligned_cols=76 Identities=13% Similarity=0.144 Sum_probs=67.5
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFP------GRSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~------dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
.....+|||+||+ ++++|++|+++|+.||.|.++.++. .+|||||+|.+.++|++||+ |||..|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp-~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLP-FEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCC-TTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCCC-CCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456899999999 9999999999999999998743332 17899999999999999999 99999999999999
Q ss_pred eecC
Q 037075 125 FAKS 128 (806)
Q Consensus 125 fAKs 128 (806)
+++.
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9975
No 131
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.49 E-value=3.9e-14 Score=139.11 Aligned_cols=76 Identities=28% Similarity=0.307 Sum_probs=69.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCeeCC--CeEEEEeecCC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG--RSYAFVQFRSIISACRAKETLQGKLFGN--PRVHICFAKSE 129 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d--KGyAFVeF~s~EdAekAleaLnG~~I~G--rrIrVefAKs~ 129 (806)
..+|||+||+ +.+||++|+++|++||+|++|+|+.+ ++||||+|.+.++|++|++.|||..|.| +.|+|+|++..
T Consensus 46 vl~l~VgNL~-~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENLF-YPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSCC-SCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred eEEEEEeCcC-CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 3458899999 99999999999999999999999754 6799999999999999999999999965 99999999975
Q ss_pred C
Q 037075 130 A 130 (806)
Q Consensus 130 ~ 130 (806)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 132
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.49 E-value=3.8e-14 Score=136.52 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=69.7
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCC--CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFG--EIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FG--eI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..++||||||+ .+++|++|+++|+.|| .|++|+|+.+ ||||||+|.+.++|++|++.|+|..|+|+.|+|.
T Consensus 54 ~~~~lfVgnLp-~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFS-WWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCC-TTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCC-CCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 45799999999 9999999999999999 9999999865 6899999999999999999999999999999999
Q ss_pred eecC
Q 037075 125 FAKS 128 (806)
Q Consensus 125 fAKs 128 (806)
|++.
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 9965
No 133
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.49 E-value=2e-14 Score=122.01 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=64.2
Q ss_pred CcEEEEecCCCCCC------CHHHHHHhhcCCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCC-eEE
Q 037075 54 SEVLWIGFPALLKV------DEVILRKAFSPFGEIEKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGNP-RVH 122 (806)
Q Consensus 54 S~tLfVGNLp~~~v------TEedLrelFs~FGeI~~VrI~~d----KGyAFVeF~s~EdAekAleaLnG~~I~Gr-rIr 122 (806)
+++|||+||+ ..+ ++++|+++|++||.|.+|++... +|||||+|.+.++|++|++.|||..|+|+ .|+
T Consensus 1 ~~~l~V~nLp-~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVP-QVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCC-CCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCC-CCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3689999999 888 78999999999999999998743 79999999999999999999999999999 887
Q ss_pred EE
Q 037075 123 IC 124 (806)
Q Consensus 123 Ve 124 (806)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 134
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.49 E-value=1.4e-13 Score=152.59 Aligned_cols=79 Identities=22% Similarity=0.376 Sum_probs=73.8
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
.++++|||+||+ ..+|+++|+++|++||.|+.|.|+.+ +|||||+|.+.++|++||+.|||..|+|+.|+|.|
T Consensus 100 ~~~~~lfV~nL~-~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVN-YDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999 99999999999999999999999865 78999999999999999999999999999999999
Q ss_pred ecCCCC
Q 037075 126 AKSEAG 131 (806)
Q Consensus 126 AKs~~~ 131 (806)
++....
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987544
No 135
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.48 E-value=9.9e-14 Score=138.52 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=73.0
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~ 130 (806)
.++++|||+||+...+++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|||..+.|+.|+|.|++...
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 467899999998338999999999999999999999886 7999999999999999999999999999999999998644
No 136
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.48 E-value=2.7e-14 Score=118.92 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=65.0
Q ss_pred EEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 56 VLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 56 tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
+|||+||+ .++++++|+++|++||.|.+|++..+ +|||||+|.+.++|++|++ |+|..|+|+.|+|.||
T Consensus 1 ~l~v~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLS-VNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCC-SSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCC-CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999 99999999999999999999998765 5899999999999999998 9999999999999986
No 137
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.48 E-value=1.2e-14 Score=125.04 Aligned_cols=75 Identities=15% Similarity=0.310 Sum_probs=67.1
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
++|||+||+ .++++++|+++|++||+|++|++..+ +|||||+|.+.+ |++|++.|||..++|+.|+|+||..
T Consensus 2 ~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLV-YSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEEC-TTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCC-CCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 589999999 99999999999999999999999865 789999999999 9999999999999999999999987
Q ss_pred CCC
Q 037075 129 EAG 131 (806)
Q Consensus 129 ~~~ 131 (806)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 138
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=8.1e-14 Score=121.20 Aligned_cols=77 Identities=18% Similarity=0.181 Sum_probs=70.5
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEE-EeCC--CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKIT-VFPG--RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~Vr-I~~d--KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
..+++|||+||+ .++++++|+++|++||.|++|+ ++.+ .+.|||+|.+.++|++|++.|||..|+|+.|+|.|+++
T Consensus 13 ~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIP-PHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEEC-SSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCC-CCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 346789999999 9999999999999999999994 7765 34599999999999999999999999999999999987
Q ss_pred C
Q 037075 129 E 129 (806)
Q Consensus 129 ~ 129 (806)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 139
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=2.2e-13 Score=133.54 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=74.1
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
...++++|||+||+ .++++++|+++|+.||.|++|.|..+ +|||||+|.+.++|++|++.|+|..|+|+.|+|+
T Consensus 84 ~~~~~~~l~V~nLp-~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLD-FGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCC-SCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44568899999999 99999999999999999999999864 6999999999999999999999999999999999
Q ss_pred eecCCC
Q 037075 125 FAKSEA 130 (806)
Q Consensus 125 fAKs~~ 130 (806)
|+....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997643
No 140
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=4.7e-14 Score=131.80 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=72.2
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeE--------EEEe---CCCCEEEEEeCCHHHHHHHHHHhCCCeeC
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEK--------ITVF---PGRSYAFVQFRSIISACRAKETLQGKLFG 117 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~--------VrI~---~dKGyAFVeF~s~EdAekAleaLnG~~I~ 117 (806)
....++++|||+||+ .++++++|+++|+.||.|.. |++. ..+|||||+|.+.++|++|++.|||..|.
T Consensus 40 ~~~~~~~~l~V~nLp-~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 40 EPGEPNCRIYVKNLA-KHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CCCSCCSEEEEEEEC-TTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCCCEEEEeCCC-CCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 345678999999999 99999999999999999876 3332 34899999999999999999999999999
Q ss_pred CCeEEEEeecCCCC
Q 037075 118 NPRVHICFAKSEAG 131 (806)
Q Consensus 118 GrrIrVefAKs~~~ 131 (806)
|+.|+|.|++....
T Consensus 119 g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 119 GKPMVVQFARSARP 132 (143)
T ss_dssp TEECEEEECCCSCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999987554
No 141
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.8e-14 Score=126.24 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=71.2
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCe-eEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEI-EKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI-~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..+.++|||+||+ .+++|++|+++|+.||.| ..|+|+.+ +|||||+|.+.++|++|++. +|..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp-~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIP-FSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCC-TTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcC-CcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4567899999999 999999999999999999 88988764 79999999999999999987 9999999999999
Q ss_pred eecCCC
Q 037075 125 FAKSEA 130 (806)
Q Consensus 125 fAKs~~ 130 (806)
+++...
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997643
No 142
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=123.61 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=69.6
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
.....+|||+||+ ++++|++|+++|+.|| |++|+|+.+ ||||||+|.+.++|++|++ +++..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp-~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLP-YRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCC-TTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4556899999999 9999999999999999 559998765 6899999999999999995 899999999999999
Q ss_pred ecCCCC
Q 037075 126 AKSEAG 131 (806)
Q Consensus 126 AKs~~~ 131 (806)
+.....
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 886543
No 143
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=6.4e-14 Score=120.48 Aligned_cols=76 Identities=25% Similarity=0.340 Sum_probs=66.6
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCC--eeCCCeEEEEeecC
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-RSYAFVQFRSIISACRAKETLQGK--LFGNPRVHICFAKS 128 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-KGyAFVeF~s~EdAekAleaLnG~--~I~GrrIrVefAKs 128 (806)
.++++|||+||+ .+++|++|+++|++||.|++|+|..+ ||||||+|.+.++|++| ++. .+.|+.|+|.|+++
T Consensus 3 ~~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCT-GDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCC-SSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCC-CCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecCC
Confidence 467899999999 99999999999999999999999876 89999999999999764 444 45899999999987
Q ss_pred CCCC
Q 037075 129 EAGA 132 (806)
Q Consensus 129 ~~~~ 132 (806)
....
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 144
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=124.59 Aligned_cols=78 Identities=19% Similarity=0.205 Sum_probs=69.9
Q ss_pred CCCCCcE-EEEecCCCCCCCHHH----HHHhhcCC-CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 50 NAEPSEV-LWIGFPALLKVDEVI----LRKAFSPF-GEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 50 ~~~PS~t-LfVGNLp~~~vTEed----LrelFs~F-GeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
..+|+.| |||+||+ +++++++ |+++|++| |+|.+|. .|+|||+|.+.++|++|++.|+|..+.|+.|+|
T Consensus 4 ~~~p~~T~lYV~NL~-~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 4 GSSGCHTLLYVYNLP-ANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SCCCSSEEEEEESCC-TTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCcceEEEEeCCC-CcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 3467777 8999999 9999988 55899999 5999983 399999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 037075 124 CFAKSEAGA 132 (806)
Q Consensus 124 efAKs~~~~ 132 (806)
.||+..+.-
T Consensus 79 ~~A~~~sd~ 87 (96)
T 2diu_A 79 SFTPKNREL 87 (96)
T ss_dssp ESSCCSCCC
T ss_pred EecCCCcce
Confidence 999987654
No 145
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.46 E-value=6e-14 Score=145.11 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=72.5
Q ss_pred CCCCcEEEEecCCCCCC---------CHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCee-----
Q 037075 51 AEPSEVLWIGFPALLKV---------DEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLF----- 116 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~v---------TEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I----- 116 (806)
...+++||||||+ ..+ +|++|+++|++||+|++|+|+..||||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~-~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGID-GALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTT-GGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCC-hhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 4568899999999 787 7999999999999999999999999999999999999999999999999
Q ss_pred -------CCCeEEEEeecCCCCC
Q 037075 117 -------GNPRVHICFAKSEAGA 132 (806)
Q Consensus 117 -------~GrrIrVefAKs~~~~ 132 (806)
.|+.|+|.||+....+
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-----
T ss_pred ccccccCCCCEEEEEEccCCCCH
Confidence 8999999999986654
No 146
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=4.3e-14 Score=117.75 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=66.1
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
++|||+||+ .++++++|+++|++||+|.+|++..+ +|||||+|.+.++|++|++.++ ..++|+.|+|.||
T Consensus 1 ~~l~v~nlp-~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLS-WQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCC-SSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 369999999 99999999999999999999999875 6899999999999999999999 9999999999987
No 147
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3e-13 Score=120.57 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=69.7
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeE-EEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEK-ITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~-VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
....+|||+||+ ++++|++|+++|+.||.|.+ |+|..+ +|||||+|.+.++|++|++. +|..|+|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp-~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLP-FGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCC-TTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 456899999999 99999999999999999987 777654 79999999999999999997 99999999999999
Q ss_pred ecCCC
Q 037075 126 AKSEA 130 (806)
Q Consensus 126 AKs~~ 130 (806)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87643
No 148
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.45 E-value=2.9e-13 Score=125.54 Aligned_cols=77 Identities=29% Similarity=0.393 Sum_probs=71.9
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
...++.+|||+||+ ..+++++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 83 ~~~~~~~l~v~nl~-~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 83 SSDDTFNLFVGDLN-VNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCTTCEEEEEESCC-TTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCceEEECCCC-CCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 34567899999999 99999999999999999999999865 679999999999999999999999999999999
Q ss_pred Eeec
Q 037075 124 CFAK 127 (806)
Q Consensus 124 efAK 127 (806)
.||+
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9986
No 149
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.45 E-value=1.7e-13 Score=120.51 Aligned_cols=79 Identities=20% Similarity=0.196 Sum_probs=69.0
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeE-----EEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEK-----ITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~-----VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
..+..+|||+||+ .++++++|+++|+.||.|.. ......+|||||+|.+.++|++|++ |+|..|.|+.|+|.|
T Consensus 14 ~~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLN-PNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCC-TTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 3467899999999 99999999999999997765 2233348999999999999999999 999999999999999
Q ss_pred ecCCCC
Q 037075 126 AKSEAG 131 (806)
Q Consensus 126 AKs~~~ 131 (806)
++....
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987543
No 150
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.45 E-value=2.6e-13 Score=125.94 Aligned_cols=77 Identities=21% Similarity=0.396 Sum_probs=72.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCC------CEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGR------SYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dK------GyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
++++|||+||+ .+++|++|+++|+.||.|.+|++..++ |||||+|.+.++|++|++.|+|..+.|+.|+|.|+
T Consensus 1 s~~~l~v~nlp-~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 79 (167)
T 1fxl_A 1 SKTNLIVNYLP-QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79 (167)
T ss_dssp CCSEEEEESCC-TTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcceEEEcCCC-CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEec
Confidence 36799999999 999999999999999999999998764 89999999999999999999999999999999999
Q ss_pred cCCC
Q 037075 127 KSEA 130 (806)
Q Consensus 127 Ks~~ 130 (806)
++..
T Consensus 80 ~~~~ 83 (167)
T 1fxl_A 80 RPSS 83 (167)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8644
No 151
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.45 E-value=2.3e-13 Score=118.79 Aligned_cols=75 Identities=23% Similarity=0.314 Sum_probs=62.9
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCee--CCCeEEEEeec
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-RSYAFVQFRSIISACRAKETLQGKLF--GNPRVHICFAK 127 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-KGyAFVeF~s~EdAekAleaLnG~~I--~GrrIrVefAK 127 (806)
..+..+||||||+ .++||++|+++|++||.|++|+|+.+ ||||||+|.+.++|++ |+|..+ .|+.|.|.+++
T Consensus 8 ~~~~~~l~V~~Lp-~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 8 HHHGSKVFVGRCT-EDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ---CCEEEEESCC-TTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 4567899999999 99999999999999999999999876 9999999999999983 567654 69999999998
Q ss_pred CCC
Q 037075 128 SEA 130 (806)
Q Consensus 128 s~~ 130 (806)
+..
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 152
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.44 E-value=1.3e-13 Score=126.08 Aligned_cols=75 Identities=11% Similarity=0.009 Sum_probs=69.6
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCC---eeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGE---IEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGe---I~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
....+|||+||+ +++||++|+++|+.||. |..|+|+.+ +|||||+|.+.++|++|++ |+|..|+|+.|+|
T Consensus 15 ~~~~~l~V~nLp-~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLP-WSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCC-TTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCC-CCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456899999999 99999999999999999 899998765 6899999999999999999 9999999999999
Q ss_pred EeecC
Q 037075 124 CFAKS 128 (806)
Q Consensus 124 efAKs 128 (806)
.+++.
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99965
No 153
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.44 E-value=2.6e-13 Score=131.92 Aligned_cols=79 Identities=14% Similarity=0.252 Sum_probs=73.9
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
.+.++|||+||+ .++++++|+++|++||.|+.|++..+ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 123 ~~~~~l~v~nlp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASVH-QDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp TTSCEEEEECCC-TTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred CCCcEEEEeCCC-CcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 456899999999 99999999999999999999999876 68999999999999999999999999999999999
Q ss_pred ecCCCC
Q 037075 126 AKSEAG 131 (806)
Q Consensus 126 AKs~~~ 131 (806)
++....
T Consensus 202 a~~~~~ 207 (216)
T 2qfj_A 202 AVTPPM 207 (216)
T ss_dssp CSSCSS
T ss_pred ecCCCC
Confidence 988654
No 154
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.44 E-value=2.7e-13 Score=138.37 Aligned_cols=77 Identities=30% Similarity=0.542 Sum_probs=73.0
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCC-CEEEEEeCCHHHHHHHHHHhCCCeeC-CCeEEEEeec
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGR-SYAFVQFRSIISACRAKETLQGKLFG-NPRVHICFAK 127 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dK-GyAFVeF~s~EdAekAleaLnG~~I~-GrrIrVefAK 127 (806)
...++++|||+||+ ..+++++|+++|++||.|++|+++.++ |||||+|.+.++|++|++.|||..|. |+.|+|+|+|
T Consensus 203 ~~~~~~~l~v~nl~-~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 203 ENPPNHILFLTNLP-EETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCCEEEEeCCC-CcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 44578999999999 999999999999999999999999886 99999999999999999999999999 9999999997
No 155
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.44 E-value=2.1e-13 Score=135.21 Aligned_cols=79 Identities=29% Similarity=0.426 Sum_probs=71.6
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..|+++||||||+ .++||++|+++|++||+|++|+|+.+ +|||||+|.+.++|++|++.|+|..+.|+.|+|.
T Consensus 12 ~~p~~tlfVgnLp-~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 12 SYPMASLYVGDLH-PDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ---CCEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCC-CCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 4578899999999 99999999999999999999999865 5799999999999999999999999999999999
Q ss_pred eecCCC
Q 037075 125 FAKSEA 130 (806)
Q Consensus 125 fAKs~~ 130 (806)
++....
T Consensus 91 ~~~~~~ 96 (213)
T 4f02_A 91 WSQRDP 96 (213)
T ss_dssp ECCCCT
T ss_pred cccccc
Confidence 987643
No 156
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.43 E-value=3e-13 Score=126.25 Aligned_cols=77 Identities=23% Similarity=0.407 Sum_probs=71.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
++++|||+||+ .++++++|+++|+.||.|.+|++..+ +|||||+|.+.++|++|++.|+|..+.|+.|+|.|+
T Consensus 2 ~~~~l~v~nlp-~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLP-QDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCC-TTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCC-CCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 57899999999 99999999999999999999998764 589999999999999999999999999999999999
Q ss_pred cCCC
Q 037075 127 KSEA 130 (806)
Q Consensus 127 Ks~~ 130 (806)
+...
T Consensus 81 ~~~~ 84 (168)
T 1b7f_A 81 RPGG 84 (168)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8654
No 157
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.43 E-value=2.4e-13 Score=134.76 Aligned_cols=77 Identities=29% Similarity=0.392 Sum_probs=71.8
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
..++|||+||+ ..+++++|+++|++||.|++|+|+.+ +|||||+|.+.++|++|++.|||..|+|+.|+|.|+++
T Consensus 102 ~~~~l~v~nl~-~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLD-KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcc-cccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 35789999999 99999999999999999999999865 78999999999999999999999999999999999986
Q ss_pred CC
Q 037075 129 EA 130 (806)
Q Consensus 129 ~~ 130 (806)
..
T Consensus 181 ~~ 182 (213)
T 4f02_A 181 RK 182 (213)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 158
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.42 E-value=5.4e-13 Score=136.10 Aligned_cols=82 Identities=30% Similarity=0.440 Sum_probs=74.9
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHH----HhhcCCCCeeEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILR----KAFSPFGEIEKITVFP---GRSYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLr----elFs~FGeI~~VrI~~---dKGyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
.+..++++|||+||+ .+++|++|+ ++|++||.|++|++.. .||||||+|.+.++|++|++.|||..|.|+.|
T Consensus 4 ~~~~~~~~l~V~nlp-~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 4 PETRPNHTIYINNLN-EKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCCCEEEEeCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 456789999999999 999999976 8999999999999876 37999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 037075 122 HICFAKSEAG 131 (806)
Q Consensus 122 rVefAKs~~~ 131 (806)
+|.|++....
T Consensus 83 ~v~~a~~~~~ 92 (282)
T 3pgw_A 83 RIQYAKTDSD 92 (282)
T ss_pred EEEEeccCcc
Confidence 9999977553
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.41 E-value=5.4e-13 Score=127.98 Aligned_cols=80 Identities=19% Similarity=0.349 Sum_probs=74.3
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..+.++|||+||+ ..+++++|+++|++||.|.+|++..+ +|||||+|.+.++|++|++.|||..|+|+.|+|.
T Consensus 111 ~~~~~~l~v~nl~-~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 111 PDSAHKLFIGGLP-NYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 189 (198)
T ss_dssp SCCCCEEEEECCC-TTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3567999999999 99999999999999999999999876 6899999999999999999999999999999999
Q ss_pred eecCCCC
Q 037075 125 FAKSEAG 131 (806)
Q Consensus 125 fAKs~~~ 131 (806)
|+++...
T Consensus 190 ~a~~~~~ 196 (198)
T 2yh0_A 190 RASVGAK 196 (198)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9987543
No 160
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=122.21 Aligned_cols=76 Identities=13% Similarity=0.038 Sum_probs=70.1
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCC---eeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGE---IEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGe---I~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
.....+|||+||+ +++|+++|+++|+.||. |.+|+|+.+ +|||||+|.+.++|++|++ |+|..|+|+.|+
T Consensus 8 ~~~~~~l~V~nLp-~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLP-WSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCC-SSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCC-CCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 4467899999999 99999999999999998 899998765 7899999999999999999 999999999999
Q ss_pred EEeecC
Q 037075 123 ICFAKS 128 (806)
Q Consensus 123 VefAKs 128 (806)
|.+++.
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 999875
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.40 E-value=7.4e-13 Score=122.75 Aligned_cols=76 Identities=32% Similarity=0.407 Sum_probs=70.8
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~ 129 (806)
++|||+||+ .++++++|+++|++||.|.+|++..+ +|||||+|.+.++|++|++.|+|..+.|+.|+|.|+...
T Consensus 1 R~l~V~nlp-~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLD-KAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEE-TTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCC-CcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999 99999999999999999999999865 489999999999999999999999999999999999765
Q ss_pred CC
Q 037075 130 AG 131 (806)
Q Consensus 130 ~~ 131 (806)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 162
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.39 E-value=3.7e-13 Score=127.56 Aligned_cols=76 Identities=11% Similarity=-0.012 Sum_probs=70.0
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCC---eeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGE---IEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGe---I~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
.....+|||+||+ +++||++|+++|+.||. |++|+|+.+ +|||||+|.+.++|++|++ |+|..|+|+.|+
T Consensus 41 ~~~~~~lfVgnLp-~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLP-WSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCC-TTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3457899999999 99999999999999999 889998765 6899999999999999999 999999999999
Q ss_pred EEeecC
Q 037075 123 ICFAKS 128 (806)
Q Consensus 123 VefAKs 128 (806)
|.+++.
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 999864
No 163
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.39 E-value=1.1e-13 Score=114.91 Aligned_cols=69 Identities=23% Similarity=0.360 Sum_probs=64.4
Q ss_pred EEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 56 VLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 56 tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
+|||+||+ .++++++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++. +|..+.|+.|+|.+|
T Consensus 1 ~l~v~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLS-PDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCC-SSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 58999999 99999999999999999999998764 78999999999999999985 999999999999886
No 164
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=2.4e-12 Score=116.36 Aligned_cols=81 Identities=25% Similarity=0.246 Sum_probs=70.0
Q ss_pred CCCCCcEEEEecCCCCCC-----------CHHHHHHhhcCCCCeeEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCee
Q 037075 50 NAEPSEVLWIGFPALLKV-----------DEVILRKAFSPFGEIEKITVFP--GRSYAFVQFRSIISACRAKETLQGKLF 116 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~v-----------TEedLrelFs~FGeI~~VrI~~--dKGyAFVeF~s~EdAekAleaLnG~~I 116 (806)
...++++|+|.||. ... ++++|+++|++||.|++|.|.. .+|||||+|.+.++|++|++.|||..|
T Consensus 11 ~~~~s~~l~l~Nl~-~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 11 RMRHERVVIIKNMF-HPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCSCCEEEEESSC-CTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCceEEEEEcCC-CHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 45679999999995 222 2689999999999999997753 289999999999999999999999999
Q ss_pred CCCeEEEEeecCCCC
Q 037075 117 GNPRVHICFAKSEAG 131 (806)
Q Consensus 117 ~GrrIrVefAKs~~~ 131 (806)
+|+.|+|.|++....
T Consensus 90 ~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 90 GGRQITAQAWDGTTD 104 (112)
T ss_dssp TTEECEEEECCSCCC
T ss_pred CCcEEEEEEeCCCCC
Confidence 999999999987543
No 165
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.39 E-value=6.7e-13 Score=124.58 Aligned_cols=75 Identities=19% Similarity=0.350 Sum_probs=70.5
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
...++|||+||+ ..+++++|+++|++||.|..|++..+ +|||||+|.+.++|++|++.|||..|+|+.|+|+|
T Consensus 92 ~~~~~l~v~nlp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 92 PGAHKLFIGGLP-NYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TTTTCEEEECCC-TTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEEcCC-CcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 447899999999 99999999999999999999999876 68999999999999999999999999999999999
Q ss_pred ec
Q 037075 126 AK 127 (806)
Q Consensus 126 AK 127 (806)
|.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 166
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.39 E-value=5.6e-13 Score=128.95 Aligned_cols=78 Identities=28% Similarity=0.372 Sum_probs=73.4
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCC-CeeEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCeeC-CCeEEEEeec
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFG-EIEKITVFP-GRSYAFVQFRSIISACRAKETLQGKLFG-NPRVHICFAK 127 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FG-eI~~VrI~~-dKGyAFVeF~s~EdAekAleaLnG~~I~-GrrIrVefAK 127 (806)
..|+++|||+||+ ..+++++|+++|++|| .|..|++++ ++|||||+|.+.++|.+|++.|||..++ |+.|+|.|++
T Consensus 117 ~~~~~~l~v~nl~-~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 117 FPPSATLHLSNIP-PSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCCEEEECCCC-TTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCCccEEEEeCCC-CCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 4678999999999 8999999999999999 999999966 6999999999999999999999999999 9999999998
Q ss_pred CC
Q 037075 128 SE 129 (806)
Q Consensus 128 s~ 129 (806)
+.
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 167
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.38 E-value=7.3e-13 Score=132.63 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=74.2
Q ss_pred CCCCcEEEEecCCCC-CCCHHHHHHhhcCCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 51 AEPSEVLWIGFPALL-KVDEVILRKAFSPFGEIEKITVFPG-RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~-~vTEedLrelFs~FGeI~~VrI~~d-KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
..++++|||+||+ . ++++++|+++|++||.|++|++..+ +|||||+|.+.++|++|++.|+|..|.|+.|+|.|++.
T Consensus 31 ~~~~~~l~V~nLp-~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 31 GAGNSVLLVSNLN-PERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCCCSEEEEESCC-TTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCEEEEeCCC-cccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 4578999999999 8 8999999999999999999999888 69999999999999999999999999999999999986
Q ss_pred CC
Q 037075 129 EA 130 (806)
Q Consensus 129 ~~ 130 (806)
..
T Consensus 110 ~~ 111 (229)
T 2adc_A 110 QN 111 (229)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 168
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.38 E-value=1.1e-12 Score=131.30 Aligned_cols=78 Identities=28% Similarity=0.372 Sum_probs=73.5
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCC-CeeEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCeeC-CCeEEEEeec
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFG-EIEKITVFP-GRSYAFVQFRSIISACRAKETLQGKLFG-NPRVHICFAK 127 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FG-eI~~VrI~~-dKGyAFVeF~s~EdAekAleaLnG~~I~-GrrIrVefAK 127 (806)
..++++|||+||+ ..+++++|+++|++|| .|..|+++. +++||||+|.+.++|++|++.|+|..+. |+.|+|.|++
T Consensus 148 ~~~~~~l~V~nlp-~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 148 FPPSATLHLSNIP-PSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CCSCSEEEEECCC-TTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCCEEEEeCCC-ccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 4678999999999 8999999999999999 999999965 7999999999999999999999999999 9999999998
Q ss_pred CC
Q 037075 128 SE 129 (806)
Q Consensus 128 s~ 129 (806)
+.
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 169
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.37 E-value=1.2e-12 Score=133.67 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=74.5
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 49 KNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
....++++|||+||+ .++|+++|+++|+.||.|.+|++.+++|||||+|.+.++|.+|++.|+|..|.|+.|+|.|+..
T Consensus 17 ~~~~~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 17 KTYTQRCRLFVGNLP-TDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CSSCGGGEEEEESCC-TTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCCEEEEECCC-CCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 334567899999999 9999999999999999999999999999999999999999999999999999999999999975
No 170
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.37 E-value=1e-12 Score=123.03 Aligned_cols=76 Identities=30% Similarity=0.409 Sum_probs=69.7
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeC---CCeEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFG---NPRVH 122 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~---GrrIr 122 (806)
..+.++|||+||+ ..+++++|+++|++||.|++|++..+ +|||||+|.+.++|++|++.|||..+. |+.|+
T Consensus 92 ~~~~~~l~v~nl~-~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMIS-KKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCC-CcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999 99999999999999999999999876 789999999999999999999999876 48999
Q ss_pred EEeec
Q 037075 123 ICFAK 127 (806)
Q Consensus 123 VefAK 127 (806)
|.||.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99984
No 171
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.37 E-value=3.3e-13 Score=118.82 Aligned_cols=76 Identities=17% Similarity=0.385 Sum_probs=69.8
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
++++|||+||+ .++++++|+++|+.||.|.+|++..+ +|||||+|.+.++|++|++ +|..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGID-VRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCC-CCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 46799999999 99999999999999999999999874 6899999999999999998 9999999999999998
Q ss_pred CCCC
Q 037075 128 SEAG 131 (806)
Q Consensus 128 s~~~ 131 (806)
....
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6543
No 172
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.36 E-value=1.1e-12 Score=125.62 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=69.0
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..+.++|||+||+ .++++++|+++|+.||.|+.|++..+ +|||||+|.+.++|++|++. +|..|+|+.|+|.
T Consensus 101 ~~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 101 HLTVKKIFVGGIK-EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVR 178 (196)
T ss_dssp --CCSEEEEECCT-TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEE
T ss_pred CCCcceEEEeCCC-CCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 3456899999999 99999999999999999999999865 68999999999999999986 8999999999999
Q ss_pred eecCCCCC
Q 037075 125 FAKSEAGA 132 (806)
Q Consensus 125 fAKs~~~~ 132 (806)
|+.+....
T Consensus 179 ~a~~k~~~ 186 (196)
T 1l3k_A 179 KALSKQEM 186 (196)
T ss_dssp ECC-----
T ss_pred ecCChhHh
Confidence 99886654
No 173
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.36 E-value=1.9e-12 Score=117.34 Aligned_cols=78 Identities=24% Similarity=0.372 Sum_probs=68.9
Q ss_pred CCCCcEEEEecCCCC----CCCHHHHHHhhcCCCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 037075 51 AEPSEVLWIGFPALL----KVDEVILRKAFSPFGEIEKITVFPG-------RSYAFVQFRSIISACRAKETLQGKLFGNP 119 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~----~vTEedLrelFs~FGeI~~VrI~~d-------KGyAFVeF~s~EdAekAleaLnG~~I~Gr 119 (806)
..|+++|+|.|+... +-++++|+++|++||+|++|+|+.+ +|||||+|.+.++|++|++.|||+.++|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 358899999999621 2378999999999999999998753 78999999999999999999999999999
Q ss_pred eEEEEeecC
Q 037075 120 RVHICFAKS 128 (806)
Q Consensus 120 rIrVefAKs 128 (806)
.|+|.|++.
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999965
No 174
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.36 E-value=2.4e-12 Score=120.14 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=69.8
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCC--CeEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGN--PRVH 122 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~G--rrIr 122 (806)
..++++|||+||+ ..+++++|+++|++||.|+.|++..+ +|||||+|.+.++|.+|++.|||..+.| +.|+
T Consensus 86 ~~~~~~l~v~nl~-~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 86 SIKDTNLYVTNLP-RTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp TTTTCEEEEESCC-TTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred cCCCCCEEEeCCC-CCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 3467899999999 99999999999999999999999876 4899999999999999999999999988 9999
Q ss_pred EEee
Q 037075 123 ICFA 126 (806)
Q Consensus 123 VefA 126 (806)
|.||
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 175
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.3e-12 Score=119.31 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=67.2
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
..+|||+||+ ++++|++|+++|+.| .|++|+|+.+ +|||||+|.+.++|++|+ .|+|..|+|+.|.|..++.
T Consensus 16 ~~~v~V~nLp-~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMP-FSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCC-SSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCC-CCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4699999999 999999999999999 8999999864 799999999999999999 7999999999999988864
No 176
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.35 E-value=1.6e-12 Score=126.43 Aligned_cols=78 Identities=22% Similarity=0.376 Sum_probs=70.9
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
.++++|||+||+ .+++|++|+++|+.||.|++|+++.+ +|||||+|.+.++|++|++.|+|..|.|+.|+|.+
T Consensus 26 ~~~~~l~V~nLp-~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 26 AIMSRVYVGSIY-YELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHTEEEEECCC-TTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred CcCCEEEEECCC-CCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 356899999999 99999999999999999999999764 79999999999999999999999999999999998
Q ss_pred ecCCC
Q 037075 126 AKSEA 130 (806)
Q Consensus 126 AKs~~ 130 (806)
+....
T Consensus 105 ~~~~~ 109 (216)
T 2qfj_A 105 PSNIG 109 (216)
T ss_dssp CSCCG
T ss_pred CCCcc
Confidence 87543
No 177
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.35 E-value=8.9e-13 Score=127.56 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=71.9
Q ss_pred CcEEEEecCCCC-CCCHHHHHHhhcCCCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 037075 54 SEVLWIGFPALL-KVDEVILRKAFSPFGEIEKITVFPG-RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEA 130 (806)
Q Consensus 54 S~tLfVGNLp~~-~vTEedLrelFs~FGeI~~VrI~~d-KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~ 130 (806)
+++|||+||+ . ++++++|+++|+.||.|.+|++..+ +|||||+|.+.++|++|++.|+|..+.|+.|+|.|++...
T Consensus 3 ~~~l~v~nlp-~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLN-PERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCC-SSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CcEEEEeCCC-cccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 5799999999 8 9999999999999999999999887 6999999999999999999999999999999999998654
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.35 E-value=8.5e-13 Score=123.31 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=69.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
++++|||+||+ ..+++++|+++|++||.|+.|++..+ +|||||+|.+.++|++|++ ++|..|+|+.|+|.||
T Consensus 86 ~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 86 KTGKIFVGGIG-PDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HCEEEEEEEEC-TTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred CCCeEEECCCC-CCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 46799999999 99999999999999999999998865 5799999999999999998 8999999999999999
Q ss_pred cCC
Q 037075 127 KSE 129 (806)
Q Consensus 127 Ks~ 129 (806)
+++
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 179
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.35 E-value=1.5e-12 Score=124.69 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=71.0
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
...++++|||+||+ .+++|++|+++|+.||.|.+|+++.+ +|||||+|.+.++|++|++. +|..+.|+.|.|
T Consensus 9 ~~~~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGLS-FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCCC-CCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 34567899999999 99999999999999999999999865 57999999999999999976 999999999999
Q ss_pred EeecCCCC
Q 037075 124 CFAKSEAG 131 (806)
Q Consensus 124 efAKs~~~ 131 (806)
.++.....
T Consensus 87 ~~~~~~~~ 94 (196)
T 1l3k_A 87 KRAVSRED 94 (196)
T ss_dssp EECCC---
T ss_pred ecccCccc
Confidence 99976543
No 180
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.34 E-value=3.4e-13 Score=128.38 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=69.4
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
....+|||+||+ +++||++|+++|++|| |++|+|+.+ ||||||+|.+.++|++|| .+++..|.|+.|+|.++
T Consensus 44 ~~~~~lfV~nLp-~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLP-YKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCC-TTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 456789999999 9999999999999999 779998865 789999999999999999 79999999999999998
Q ss_pred cCCCC
Q 037075 127 KSEAG 131 (806)
Q Consensus 127 Ks~~~ 131 (806)
.....
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 76543
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.33 E-value=2.5e-12 Score=121.59 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=69.0
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEe--CCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVF--PGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSE 129 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~--~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~ 129 (806)
.++++|||+||+ ..+++++|+++|++||.|..+ .. ..+|||||+|.+.++|.+|++.|||..|+|+.|+|.|++++
T Consensus 97 ~~~~~l~v~nlp-~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLS-FNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCC-SSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCC-CCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 467899999999 999999999999999999877 21 23899999999999999999999999999999999999864
No 182
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=2.3e-12 Score=139.57 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=70.7
Q ss_pred CCCCCCcEEEEecC--CCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeC---CC--eE
Q 037075 49 KNAEPSEVLWIGFP--ALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFG---NP--RV 121 (806)
Q Consensus 49 ~~~~PS~tLfVGNL--p~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~---Gr--rI 121 (806)
...+|+++|||||+ + ..+||++|+++|++||+|++|.+..+||||||+|.+.++|++|++.|||+.+. |+ .|
T Consensus 13 ~~~~ps~~l~VgN~gl~-~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 13 TVSYATQSLVVANGGLG-NGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp CCSSCCSEEEEETCSGG-GTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred ecCCCCCEEEEEcCCCC-CCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 34679999999994 6 78999999999999999999999999999999999999999999999999883 45 58
Q ss_pred EEEeecC
Q 037075 122 HICFAKS 128 (806)
Q Consensus 122 rVefAKs 128 (806)
.|.|++.
T Consensus 92 y~~~~~~ 98 (345)
T 3tht_A 92 YLNFVEK 98 (345)
T ss_dssp EEEECSS
T ss_pred EEEEeec
Confidence 8899853
No 183
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.33 E-value=2.9e-12 Score=118.86 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=68.3
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCe--EEE
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPR--VHI 123 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~Grr--IrV 123 (806)
.+..+|||+||+ ..+++++|+++|++||.|..|++..+ +|||||+|.+.++|.+|++.|||..+.|+. |+|
T Consensus 86 ~~~~~l~v~nl~-~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 86 IRDANLYVSGLP-KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GTTCEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCcEEECCCC-CcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 356789999999 99999999999999999999998765 589999999999999999999999999965 899
Q ss_pred Eee
Q 037075 124 CFA 126 (806)
Q Consensus 124 efA 126 (806)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 184
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.32 E-value=2.8e-12 Score=120.40 Aligned_cols=76 Identities=18% Similarity=0.374 Sum_probs=71.4
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCC----C-------CeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPF----G-------EIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~F----G-------eI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
++++|||+||+ .++||++|+++|++| | .|.++.+..++|||||+|.+.++|++|+ .|+|..+.|+.|
T Consensus 3 ~~~~l~V~nLp-~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 3 SARRLYVGNIP-FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp GGGEEEEESCC-TTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred cccEEEEcCCC-cccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 56899999999 999999999999999 7 8999999999999999999999999999 899999999999
Q ss_pred EEEeecCCC
Q 037075 122 HICFAKSEA 130 (806)
Q Consensus 122 rVefAKs~~ 130 (806)
+|.+++...
T Consensus 81 ~v~~~~~~~ 89 (172)
T 2g4b_A 81 KIRRPHDYQ 89 (172)
T ss_dssp EEECCSSCC
T ss_pred eecCCcccC
Confidence 999987644
No 185
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.31 E-value=4e-12 Score=119.10 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=69.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeC--------CCCEEEEEeCCHHHHHHHHHHhCCCeeC---CCeE
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFP--------GRSYAFVQFRSIISACRAKETLQGKLFG---NPRV 121 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~--------dKGyAFVeF~s~EdAekAleaLnG~~I~---GrrI 121 (806)
.+++|||+||+ .+++|++|+++|++||.|.+|+++. .+|||||+|.+.++|++|++.|+|..+. ++.+
T Consensus 2 ~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVP-RTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCC-TTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCC-CCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 46799999999 9999999999999999999999874 3679999999999999999999999875 6778
Q ss_pred EEEeecCCCC
Q 037075 122 HICFAKSEAG 131 (806)
Q Consensus 122 rVefAKs~~~ 131 (806)
.+.+++....
T Consensus 81 ~~~~~~~~~~ 90 (175)
T 3nmr_A 81 QMKPADSEKN 90 (175)
T ss_dssp EEEECGGGCC
T ss_pred EEcccccccc
Confidence 8888876543
No 186
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3.8e-12 Score=115.16 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=62.6
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeC---------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFP---------GRSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~---------dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
..+++|||+||+ .+++|++|+++|++||+|. +.++. .||||||+|.+.++|++|++.|++ ++|+.|.
T Consensus 6 ~~~~~lfVgnLp-~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLP-PDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCC-TTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCEEEEcCCC-CCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 456889999999 9999999999999999999 77654 278999999999999999999953 7788777
Q ss_pred EEeecC
Q 037075 123 ICFAKS 128 (806)
Q Consensus 123 VefAKs 128 (806)
+..+..
T Consensus 82 ~~~~~~ 87 (114)
T 2dnl_A 82 CVSSPT 87 (114)
T ss_dssp EECCSS
T ss_pred eccCCC
Confidence 765543
No 187
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.29 E-value=4.3e-12 Score=121.71 Aligned_cols=77 Identities=18% Similarity=0.350 Sum_probs=71.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCC----C-------CeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPF----G-------EIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~F----G-------eI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
.+++|||+||+ .+++|++|+++|+.| | .|.++.+...+|||||+|.+.++|++|+ .|+|..|.|+.|
T Consensus 3 ~~~~l~V~nLp-~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIP-FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCC-TTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCC-CCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 46899999999 999999999999999 6 7889999889999999999999999999 899999999999
Q ss_pred EEEeecCCCC
Q 037075 122 HICFAKSEAG 131 (806)
Q Consensus 122 rVefAKs~~~ 131 (806)
+|.|++....
T Consensus 81 ~v~~~~~~~~ 90 (198)
T 2yh0_A 81 KIRRPHDYQP 90 (198)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999987543
No 188
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.29 E-value=3.8e-12 Score=119.51 Aligned_cols=75 Identities=20% Similarity=0.148 Sum_probs=67.3
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCee--EEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEIE--KITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~--~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
.....+|||+||+ +++||++|+++|+.| .|+ +|+|+.+ +|||||+|.+.++|++|++ +++..|+|+.|+|
T Consensus 39 ~~~~~~lfVgnLp-~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLP-FGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCC-TTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 4557899999999 999999999999999 677 8988765 7999999999999999998 4789999999999
Q ss_pred EeecC
Q 037075 124 CFAKS 128 (806)
Q Consensus 124 efAKs 128 (806)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98854
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.29 E-value=8e-12 Score=127.60 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=73.8
Q ss_pred CCCCcEEEEecCCCCCC-CHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 51 AEPSEVLWIGFPALLKV-DEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~v-TEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
..++++|||+||+ ..+ ++++|+++|+.||.|.+|+|..+ +|||||+|.+.++|.+|++.|+|..|+|+.|+|.
T Consensus 181 ~~~~~~l~v~nlp-~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLP-PGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCC-TTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCC-cccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3567899999999 885 99999999999999999999876 7899999999999999999999999999999999
Q ss_pred eecCCCC
Q 037075 125 FAKSEAG 131 (806)
Q Consensus 125 fAKs~~~ 131 (806)
|+++...
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9987543
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.27 E-value=1.5e-11 Score=125.58 Aligned_cols=75 Identities=12% Similarity=0.044 Sum_probs=70.8
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
.++++|||+||+ .++++++|+++|+.|| |..|++...+|||||+|.+.++|++|++.|+|..|.|+.|+|.|+..
T Consensus 20 ~~~~~l~V~nLp-~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 94 (284)
T 3smz_A 20 RNRRKILIRGLP-GDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT 94 (284)
T ss_dssp HCCCEEEEECCC-TTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC
Confidence 357899999999 9999999999999999 99999988899999999999999999999999999999999999653
No 191
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.26 E-value=7.3e-12 Score=116.97 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=67.6
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 037075 53 PSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFA 126 (806)
Q Consensus 53 PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefA 126 (806)
++++|||+||+ .++||++|+++|+.||.|.+|+++.+ +|||||+|.+.++|++|++. +..++|+.|.|.++
T Consensus 2 ~~~~l~v~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLN-WDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCC-TTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCCC-CCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 57899999999 99999999999999999999999865 58999999999999999984 67899999999998
Q ss_pred cCC
Q 037075 127 KSE 129 (806)
Q Consensus 127 Ks~ 129 (806)
...
T Consensus 79 ~~~ 81 (167)
T 2cjk_A 79 IPR 81 (167)
T ss_dssp CCH
T ss_pred cch
Confidence 653
No 192
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=3.1e-12 Score=119.34 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=67.2
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCe----eEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEI----EKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVH 122 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI----~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIr 122 (806)
....+|||+||+ +++||++|+++|+.||.| ..|+|+.+ +|||||+|.+.++|++|++. ++..|.|+.|.
T Consensus 21 ~~~~~v~V~nLp-~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLP-FTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCC-TTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 346799999999 999999999999999976 57888754 68999999999999999986 99999999999
Q ss_pred EEeecC
Q 037075 123 ICFAKS 128 (806)
Q Consensus 123 VefAKs 128 (806)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998864
No 193
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.25 E-value=1.4e-11 Score=111.58 Aligned_cols=77 Identities=25% Similarity=0.328 Sum_probs=67.3
Q ss_pred CCCcEEEEecCCC-CCC--------CHHHHHHhhcCCCCeeEEEEeCC--------CCEEEEEeCCHHHHHHHHHHhCCC
Q 037075 52 EPSEVLWIGFPAL-LKV--------DEVILRKAFSPFGEIEKITVFPG--------RSYAFVQFRSIISACRAKETLQGK 114 (806)
Q Consensus 52 ~PS~tLfVGNLp~-~~v--------TEedLrelFs~FGeI~~VrI~~d--------KGyAFVeF~s~EdAekAleaLnG~ 114 (806)
.||++|+|.|+-. ..+ .+++|++.|++||.|++|+|+.+ +|||||+|.+.++|++|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 5899999999841 123 23689999999999999999753 699999999999999999999999
Q ss_pred eeCCCeEEEEeecC
Q 037075 115 LFGNPRVHICFAKS 128 (806)
Q Consensus 115 ~I~GrrIrVefAKs 128 (806)
.++|+.|+|.|+..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999864
No 194
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.24 E-value=8.8e-12 Score=124.43 Aligned_cols=75 Identities=23% Similarity=0.262 Sum_probs=67.3
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcCCCCe--eEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCC----e
Q 037075 51 AEPSEVLWIGFPALLKVDEVILRKAFSPFGEI--EKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGNP----R 120 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI--~~VrI~~d----KGyAFVeF~s~EdAekAleaLnG~~I~Gr----r 120 (806)
.+|+++|||+||+ ..++|++|+++|++||.| ++|+++.+ +|||||+|.+.++|.+|+..|||..|.|. .
T Consensus 120 ~~p~~~l~v~NLp-~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 120 QHPSNVLHFFNAP-LEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCCSEEEEEEEC-TTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCCcceEEEeCCC-CCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 4688999999999 999999999999999999 89999876 48999999999999999999999999887 3
Q ss_pred EEEEee
Q 037075 121 VHICFA 126 (806)
Q Consensus 121 IrVefA 126 (806)
+.|.||
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 555544
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.23 E-value=1.2e-11 Score=126.83 Aligned_cols=78 Identities=31% Similarity=0.463 Sum_probs=71.9
Q ss_pred CCCCCcEEEEecCCCCC-CCHHHHHHhhcCCCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 50 NAEPSEVLWIGFPALLK-VDEVILRKAFSPFGEIEKITVFPG-------RSYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~-vTEedLrelFs~FGeI~~VrI~~d-------KGyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
...++++|||+||+ .. +++++|+++|+.||.|+.|+++.+ +|||||+|.+.++|.+|+ .|||..|+|+.|
T Consensus 206 ~~~~~~~l~v~nlp-~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i 283 (292)
T 2ghp_A 206 ATLEGREIMIRNLS-TELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREI 283 (292)
T ss_dssp -CCTTTEEEEEEEC-TTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEE
T ss_pred cCCCCceEEEECCC-cccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEE
Confidence 34577899999999 89 999999999999999999999764 689999999999999999 999999999999
Q ss_pred EEEeecCC
Q 037075 122 HICFAKSE 129 (806)
Q Consensus 122 rVefAKs~ 129 (806)
+|.|+++.
T Consensus 284 ~V~~a~~k 291 (292)
T 2ghp_A 284 SVSLADKK 291 (292)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999874
No 196
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.23 E-value=1.4e-11 Score=122.24 Aligned_cols=74 Identities=19% Similarity=0.162 Sum_probs=67.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
.++|||+||+ .++++++|+++|++||.|..|+|..+ +|||||+|.+.++|++|++.++ ..++|+.|+|.|++.
T Consensus 109 ~~~l~V~nLp-~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFP-TDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCC-TTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCC-CcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 5799999999 99999999999999999999999864 7899999999999999997664 599999999999876
Q ss_pred C
Q 037075 129 E 129 (806)
Q Consensus 129 ~ 129 (806)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.21 E-value=1.8e-11 Score=125.42 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=67.7
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 48 DKNAEPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG----RSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 48 ~~~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d----KGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
.....++++|||+||+ .++++++|+++|+.||.|.+|+|..+ +|||||+|.+.++|++|++ |+|..+.|+.|+|
T Consensus 35 ~~~~~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v 112 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLP-KSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIV 112 (292)
T ss_dssp -------CEEEEEEEC-TTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEE
T ss_pred cccCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEE
Confidence 3344678999999999 99999999999999999999999874 7999999999999999995 9999999999999
Q ss_pred Eeec
Q 037075 124 CFAK 127 (806)
Q Consensus 124 efAK 127 (806)
.++.
T Consensus 113 ~~~~ 116 (292)
T 2ghp_A 113 SHLT 116 (292)
T ss_dssp EECC
T ss_pred EECC
Confidence 9974
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.21 E-value=2.4e-11 Score=114.86 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=69.1
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhcCCCCe-----eEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 50 NAEPSEVLWIGFPALLKVDEVILRKAFSPFGEI-----EKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~vTEedLrelFs~FGeI-----~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
...++++|||+||+ .++++++|+++|+.||.| .++.....+|||||+|.+.++|++|+ .|+|..|.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp-~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLN-PNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCC-TTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCC-CCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 44568899999999 999999999999999854 44555556899999999999999999 599999999999999
Q ss_pred eecCCC
Q 037075 125 FAKSEA 130 (806)
Q Consensus 125 fAKs~~ 130 (806)
|++...
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 998754
No 199
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.17 E-value=9.2e-11 Score=108.26 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=67.4
Q ss_pred CCCCcEEEEecCCCCCC---------CHHHHHHhhcCCCCeeEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 037075 51 AEPSEVLWIGFPALLKV---------DEVILRKAFSPFGEIEKITVFPG--RSYAFVQFRSIISACRAKETLQGKLFGNP 119 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~~v---------TEedLrelFs~FGeI~~VrI~~d--KGyAFVeF~s~EdAekAleaLnG~~I~Gr 119 (806)
..|+++|.|.|+-...- .+++|++.|++||.|++|.|..+ +|||||+|.+.++|.+|++.|||+.++|+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45799999999852221 13578999999999999999876 79999999999999999999999999999
Q ss_pred eEEEEeecC
Q 037075 120 RVHICFAKS 128 (806)
Q Consensus 120 rIrVefAKs 128 (806)
.|+|.|+..
T Consensus 84 ~i~v~~~~~ 92 (114)
T 3s6e_A 84 MITAAYVPL 92 (114)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEEcH
Confidence 999999864
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.17 E-value=5.7e-11 Score=110.16 Aligned_cols=77 Identities=17% Similarity=0.228 Sum_probs=67.2
Q ss_pred CCCcEEEEecCCCC-C---CCHHHHHHhhcCCCCeeEEEEeCC----------CCEEEEEeCCHHHHHHHHHHhCCCeeC
Q 037075 52 EPSEVLWIGFPALL-K---VDEVILRKAFSPFGEIEKITVFPG----------RSYAFVQFRSIISACRAKETLQGKLFG 117 (806)
Q Consensus 52 ~PS~tLfVGNLp~~-~---vTEedLrelFs~FGeI~~VrI~~d----------KGyAFVeF~s~EdAekAleaLnG~~I~ 117 (806)
+|+++|+|.|+-.. + -.+++|++.|++||+|++|+|+.+ +||+||+|.+.++|.+|++.|||+.++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 37999999998411 1 236899999999999999998754 389999999999999999999999999
Q ss_pred CCeEEEEeecC
Q 037075 118 NPRVHICFAKS 128 (806)
Q Consensus 118 GrrIrVefAKs 128 (806)
|+.|+|.|+..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999864
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.6e-10 Score=102.95 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=58.0
Q ss_pred CCCCHHHHHHhhcCCCCeeEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCC
Q 037075 65 LKVDEVILRKAFSPFGEIEKITVFP-GRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKSEAG 131 (806)
Q Consensus 65 ~~vTEedLrelFs~FGeI~~VrI~~-dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs~~~ 131 (806)
.+++|++|+++|++||+|++|.|.. .||||||+|.+.++|++|++.++| +.|+.|+|.|++....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 4589999999999999999999974 489999999999999999998655 6899999999987654
No 202
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.13 E-value=3.9e-11 Score=114.40 Aligned_cols=73 Identities=15% Similarity=0.260 Sum_probs=65.0
Q ss_pred cEEEEecC----CCCCCCHHHHHHhhcCCCCeeEEEEeCC------CCEEEEEeCC----HHH----HHHHHH--HhCCC
Q 037075 55 EVLWIGFP----ALLKVDEVILRKAFSPFGEIEKITVFPG------RSYAFVQFRS----IIS----ACRAKE--TLQGK 114 (806)
Q Consensus 55 ~tLfVGNL----p~~~vTEedLrelFs~FGeI~~VrI~~d------KGyAFVeF~s----~Ed----AekAle--aLnG~ 114 (806)
+.|||+|| + +.++|.+|+++|+.||+|.+|.++.+ +|||||+|.+ .++ |.+|++ .|+|.
T Consensus 3 ~kI~VgnL~~~~~-~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTT-TNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCC-CCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 57999999 9 99999999999999999999999877 7999999996 333 788888 78999
Q ss_pred eeCCCeEEEEeecC
Q 037075 115 LFGNPRVHICFAKS 128 (806)
Q Consensus 115 ~I~GrrIrVefAKs 128 (806)
.|+|+.|+|.+-+.
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998765
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.11 E-value=2.2e-11 Score=109.89 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=57.3
Q ss_pred EecCCCCCCCHHHHHHhh------------cCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 037075 59 IGFPALLKVDEVILRKAF------------SPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQGKLFGNPRV 121 (806)
Q Consensus 59 VGNLp~~~vTEedLrelF------------s~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLnG~~I~GrrI 121 (806)
+.+|+ ..+++++|+++| ++||+|++|+|..+ +|||||+|.+.++|++|++.|||+.++|+.|
T Consensus 20 ~~~l~-~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLR-SAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcc-cccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 34444 455677666665 99999999999875 7999999999999999999999999999999
Q ss_pred EEEee
Q 037075 122 HICFA 126 (806)
Q Consensus 122 rVefA 126 (806)
+|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99997
No 204
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.09 E-value=1.8e-10 Score=117.72 Aligned_cols=78 Identities=24% Similarity=0.239 Sum_probs=69.6
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHHhC-CCeeC---CCeEE
Q 037075 52 EPSEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG-----RSYAFVQFRSIISACRAKETLQ-GKLFG---NPRVH 122 (806)
Q Consensus 52 ~PS~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d-----KGyAFVeF~s~EdAekAleaLn-G~~I~---GrrIr 122 (806)
.++++|||+||+ ..+|+++|+++|+.||.|++|+++.+ +|||||+|.+.++|.+|++.|+ |..+. ++.|.
T Consensus 94 ~~~~~l~v~nl~-~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLS-PVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCC-CCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 457899999999 99999999999999999999999866 7899999999999999999995 44554 99999
Q ss_pred EEeecCCC
Q 037075 123 ICFAKSEA 130 (806)
Q Consensus 123 VefAKs~~ 130 (806)
|.|++...
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 99998643
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=1.5e-08 Score=91.06 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=65.1
Q ss_pred CCCCcEEEEecCCC---CC-CCH---HHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 037075 51 AEPSEVLWIGFPAL---LK-VDE---VILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHI 123 (806)
Q Consensus 51 ~~PS~tLfVGNLp~---~~-vTE---edLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrV 123 (806)
.+|-.||+|...+. .+ ..+ .+|.+.|++||+|..++++.++ +||+|.+.++|.+|++ |+|..++|+.|+|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 46677888877551 12 332 4688999999999999998877 8999999999999998 9999999999999
Q ss_pred EeecCCCC
Q 037075 124 CFAKSEAG 131 (806)
Q Consensus 124 efAKs~~~ 131 (806)
.+++++..
T Consensus 81 ~lkt~dW~ 88 (91)
T 2dnr_A 81 ALKSPSGP 88 (91)
T ss_dssp EECCCSSC
T ss_pred EeCCCCcc
Confidence 99987543
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=2.4e-08 Score=93.77 Aligned_cols=77 Identities=17% Similarity=0.086 Sum_probs=69.9
Q ss_pred CCCCCcEEEEecCCCCC-CCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCC-HHHHHHHHHHhC--CCeeCCCeEEEEe
Q 037075 50 NAEPSEVLWIGFPALLK-VDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRS-IISACRAKETLQ--GKLFGNPRVHICF 125 (806)
Q Consensus 50 ~~~PS~tLfVGNLp~~~-vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s-~EdAekAleaLn--G~~I~GrrIrVef 125 (806)
...+..+|||+||+ .. +++++|+++|+.||+|..|.+..+...|||.|.+ .++|..|++.|+ |..|+|..++++.
T Consensus 14 ~~~~G~il~v~~l~-~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 14 EEKIGCLLKFSGDL-DDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp SCCCCCEEEEEESC-CSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cccCCeEEEEecCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 35678899999999 88 9999999999999999999999999999999999 899999999994 7789999988876
Q ss_pred ec
Q 037075 126 AK 127 (806)
Q Consensus 126 AK 127 (806)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=8.6e-08 Score=86.68 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=64.5
Q ss_pred CCCCCCcEEEEecCCCCC------CCH---HHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 037075 49 KNAEPSEVLWIGFPALLK------VDE---VILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNP 119 (806)
Q Consensus 49 ~~~~PS~tLfVGNLp~~~------vTE---edLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~Gr 119 (806)
.-.+|-.||+|..++ .. ..+ .+|.+.|+.||+|..|++..++ +||+|.+.++|.+||+ |+|..++|+
T Consensus 10 ~~GPpD~Tv~V~~~~-~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 10 FQGPLDATVVVNLQS-PTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCCCTTCEEEEEESS-CCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred ecCCCCCeEEEEecC-CcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 345788899998875 22 232 4588999999999999999887 9999999999999998 999999999
Q ss_pred eEEEEeecC
Q 037075 120 RVHICFAKS 128 (806)
Q Consensus 120 rIrVefAKs 128 (806)
.|+|.+..+
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999988643
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.53 E-value=1e-07 Score=94.90 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=64.6
Q ss_pred CCCCcEEEEecCCCC----CCCHHHHHHhhcCCCCeeEEEEe----------CCCCEEEEEeCCHHHHHHHHHHhCCCee
Q 037075 51 AEPSEVLWIGFPALL----KVDEVILRKAFSPFGEIEKITVF----------PGRSYAFVQFRSIISACRAKETLQGKLF 116 (806)
Q Consensus 51 ~~PS~tLfVGNLp~~----~vTEedLrelFs~FGeI~~VrI~----------~dKGyAFVeF~s~EdAekAleaLnG~~I 116 (806)
...+.++.+.++-.. .-.+++|++.|++||+|.+|.|+ ..+|++||+|.+.++|.+|++.|||+.+
T Consensus 121 ~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp CCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred ccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 345567777665311 23467899999999999999997 3368999999999999999999999999
Q ss_pred CCCeEEEEeecC
Q 037075 117 GNPRVHICFAKS 128 (806)
Q Consensus 117 ~GrrIrVefAKs 128 (806)
+|+.|++.|...
T Consensus 201 ~gr~i~~~~~~~ 212 (222)
T 3dxb_A 201 AGRKVVAEVYDQ 212 (222)
T ss_dssp SSSBCEEEECCH
T ss_pred CCeEEEEEEcCH
Confidence 999999999854
No 209
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=98.03 E-value=5.2e-06 Score=83.58 Aligned_cols=108 Identities=24% Similarity=0.392 Sum_probs=76.4
Q ss_pred Ccceeeec-cCCCceeeeEEeecccccC---cCCC-----ceeccccccchhH-----HHHHhhccCCceEEEEecCCCC
Q 037075 376 WKWEGTIA-KGGTPVCRARCFPVGKVMD---MMLP-----EFLDCTARTGLDM-----LAKHYYQASGSWVVFFVPGSDG 441 (806)
Q Consensus 376 ~~W~GtIA-KgGtpvCrarC~pvgk~~~---~~~P-----~~ld~t~Rt~l~~-----l~~~~~~a~~~~v~~~~p~s~~ 441 (806)
..|+|.++ |.=.-.++..|+ .++.+ ..+| ..|=+|+|-.||- |.+-.....++-++.-+||+.+
T Consensus 38 ~~WqG~L~LKn~~f~v~mh~v--~Gn~~l~~~~L~~~~~~~~LRItQRmRLd~~qLe~V~rRi~~~~~~cilLAlp~~~~ 115 (195)
T 1ow1_A 38 IVWQGLLALKNDTAAVQLHFV--SGNNVLAHRSLPLSEGGPPLRIAQRMRLEATQLEGVARRMTVETDYCLLLALPCGRD 115 (195)
T ss_dssp EEEEEEEEETTEEEEEEEEEE--EECHHHHHHHSCCC---CCEEECEEEECSHHHHHHHHHHTSSTTTEEEEEEEECCSS
T ss_pred hhceeeeeeecchhhhEEEEE--eCcHHHHHHhCCCCCCCCceeeehhhccChHHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 58999887 765544444444 33221 1122 4566888877654 6777777678888888998853
Q ss_pred c--h-----hhHHHHHHHHHhccceeEeecCC------CceEEEeCCCccccceecc
Q 037075 442 D--I-----GFYNEFMHYLEEKQRAAVAKLDD------KTTLFLVPPSEFSEKVLKV 485 (806)
Q Consensus 442 D--~-----~~y~~f~~YL~~K~ragv~k~~~------~~~lflvPps~~~~~~l~v 485 (806)
. . .-.+.|++||++|+.||||-++. ...|||.|||||+.+.|+=
T Consensus 116 ~~d~~~q~~~L~~~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPCeFs~~~L~~ 172 (195)
T 1ow1_A 116 QEDVVSQTESLKAAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSESHLSR 172 (195)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSSHHHHHHHHH
T ss_pred chhhHhhhhHHHHHHHHHHHhCccceEEecCCCCCCCcceEEEEcCCcHHHHHHHHH
Confidence 2 1 12366999999999999999985 4579999999999887753
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=7.4e-05 Score=69.51 Aligned_cols=71 Identities=17% Similarity=0.133 Sum_probs=67.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCC-----CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPF-----GEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICF 125 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~F-----GeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVef 125 (806)
.++|-+-+|+ -.+++.-++.+.+++ |.|++|.+.++.+=|+|+|.+...|-+|.=+|+|.+|.|++|+|.=
T Consensus 21 ~rtiaL~~ip-DtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLS-DKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCC-TTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecCC-CCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4678899999 889999999999999 9999999999999999999999999999999999999999999863
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.46 E-value=0.00015 Score=66.52 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=64.7
Q ss_pred cEEEEecCCCCCC-C----HHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 037075 55 EVLWIGFPALLKV-D----EVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAKS 128 (806)
Q Consensus 55 ~tLfVGNLp~~~v-T----EedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAKs 128 (806)
++|+|.||+ ..+ . .+.++++|..|+++.....++.-.-..|.|.+.++|.+|...||+..+.|+.|+|.|+..
T Consensus 6 ntLiitnl~-~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 6 SGLIACVAN-DDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CEEEEECCC-GGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred ceEEEecCC-HHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 579999998 553 3 246789999999999999988866789999999999999999999999999999999984
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.97 E-value=0.022 Score=53.51 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=55.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCe-EEEEee
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPR-VHICFA 126 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~Grr-IrVefA 126 (806)
.+.|-|-+.+ .. ....+.+.|++||+|++.......++-.|.|.+..+|++||. .||..|+|.. |-|...
T Consensus 24 ~~wVtVFGFp-~~-~~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFP-QA-SASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCC-GG-GHHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCC-HH-HHHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 3456666665 33 567788999999999999886678999999999999999996 5999998644 555554
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.24 E-value=0.076 Score=47.54 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=60.1
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCC--------CEEEEEeCCHHHHHHHHHHhCCCeeCCC---e--E
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGR--------SYAFVQFRSIISACRAKETLQGKLFGNP---R--V 121 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dK--------GyAFVeF~s~EdAekAleaLnG~~I~Gr---r--I 121 (806)
..|.|.+|| ..+||+++.+.++...++.-...+.++ .-|||.|.+.+++..-.+.++|..+.+. . -
T Consensus 2 ~KvVIRrLP-P~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLP-PTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEEC-TTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCC-CCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 468899999 999999999999999987766665552 4799999999999999999999987432 2 3
Q ss_pred EEEeecCC
Q 037075 122 HICFAKSE 129 (806)
Q Consensus 122 rVefAKs~ 129 (806)
.|+||--.
T Consensus 81 ~VE~AP~q 88 (91)
T 1uw4_A 81 IVEFAPFQ 88 (91)
T ss_dssp EEEECSSC
T ss_pred EEEEcCCC
Confidence 57776544
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.63 E-value=0.1 Score=47.72 Aligned_cols=55 Identities=24% Similarity=0.202 Sum_probs=44.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQ 112 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLn 112 (806)
..+|+| ..| ..+...||.++|+.||.|.=-.| +-.-|||.|.+.+.|..|++.+.
T Consensus 16 ~HVf~l-~FP-~ewKt~DI~~lFs~fggv~I~Wi--dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFP-KEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECC-TTCCHHHHHHHHTTTCSCCCEEE--ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCC-hhhhhHHHHHHhhccCCEEEEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence 357888 666 68999999999999995542223 45689999999999999999774
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.36 E-value=0.18 Score=46.39 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=56.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCC-----CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPF-----GEIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHIC 124 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~F-----GeI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVe 124 (806)
.++|.|.||+ ..+.++.|+-.|+.- |+|++|.... +-|+|+|.+.+.|++.++. .-..+.+..|.|.
T Consensus 8 ~~~I~V~~lP-p~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 8 GVAVEVRGLP-PAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCEEEEESCC-TTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred ccEEEEECCC-CCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 4689999999 899999999999882 6899999876 8899999999999998753 2556788888884
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.40 E-value=0.073 Score=48.70 Aligned_cols=54 Identities=26% Similarity=0.249 Sum_probs=43.8
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhC
Q 037075 55 EVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQ 112 (806)
Q Consensus 55 ~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLn 112 (806)
.+|+| ..| ..+...||.++|+.||.| .|+-+ +-.-|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP-~ewKt~Di~~lFs~fggv-~I~Wi-dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFP-KEWKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECC-TTCCHHHHHHHTTTSEEE-EEEEE-ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCC-hhhhhHHHHHHHhccCCE-EEEEE-cCCeEEEEecCHHHHHHHHHhcc
Confidence 46777 666 689999999999999943 34333 45689999999999999999874
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.12 E-value=0.046 Score=61.62 Aligned_cols=54 Identities=24% Similarity=0.277 Sum_probs=41.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCC-EEEEEeCCHHHHHHHHH
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRS-YAFVQFRSIISACRAKE 109 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKG-yAFVeF~s~EdAekAle 109 (806)
.++|+|.. + ..+++.+|.+.|++||.|.++.+..++| ||.|+|.+.+++.+++.
T Consensus 53 ~rsv~v~~-~-~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIHC-P-EKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEEE-C-CC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEEc-C-CCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 57899984 5 6899999999999999999999988866 99999999999887653
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.89 E-value=0.14 Score=48.83 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=51.2
Q ss_pred EEEecCCCCCCCHHHHHHhhcCCCCeeE-EEE----------------e---CCCCEEEEEeCCHHHHHHHHHHhCCCee
Q 037075 57 LWIGFPALLKVDEVILRKAFSPFGEIEK-ITV----------------F---PGRSYAFVQFRSIISACRAKETLQGKLF 116 (806)
Q Consensus 57 LfVGNLp~~~vTEedLrelFs~FGeI~~-VrI----------------~---~dKGyAFVeF~s~EdAekAleaLnG~~I 116 (806)
|.|-+.+ .-....+.+.|++||.|++ +.+ . .+.++-.|+|.+..+|.+|+. .||..|
T Consensus 10 VtVFGFp--~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii 86 (132)
T 3p3d_A 10 ILVFGYP--ETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVF 86 (132)
T ss_dssp EEEECCC--GGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEE
T ss_pred EEEEecC--HHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEe
Confidence 3444445 3566778899999999976 211 1 146789999999999999996 699999
Q ss_pred CCCeEEEEeec
Q 037075 117 GNPRVHICFAK 127 (806)
Q Consensus 117 ~GrrIrVefAK 127 (806)
+|.-|-|....
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99877776653
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=90.99 E-value=0.057 Score=50.27 Aligned_cols=37 Identities=5% Similarity=-0.121 Sum_probs=35.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHh-CCCeeCCCeEEEEeecC
Q 037075 91 RSYAFVQFRSIISACRAKETL-QGKLFGNPRVHICFAKS 128 (806)
Q Consensus 91 KGyAFVeF~s~EdAekAleaL-nG~~I~GrrIrVefAKs 128 (806)
+|+++|+|.+.++|++|++.| ||..++| .|++.+++.
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 799999999999999999999 9999999 999998865
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=90.84 E-value=0.39 Score=43.65 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=54.9
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCC--------CCEEEEEeCCHHHHHHHHHHhCCCeeCCCe-----
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPG--------RSYAFVQFRSIISACRAKETLQGKLFGNPR----- 120 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~d--------KGyAFVeF~s~EdAekAleaLnG~~I~Grr----- 120 (806)
+-.|.|..|| +.+||+++.+.++..=++.-...+.+ -.-|||.|.+.++...-.+..+|..+-+.+
T Consensus 9 ~~KvVIRrLP-P~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLP-PGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCC-SCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCC-CCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 4568999999 99999999988887655433333332 246899999999999999999999874322
Q ss_pred EEEEeec
Q 037075 121 VHICFAK 127 (806)
Q Consensus 121 IrVefAK 127 (806)
-.|+||-
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4566664
No 221
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=88.94 E-value=0.19 Score=46.82 Aligned_cols=26 Identities=4% Similarity=-0.135 Sum_probs=23.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHhCCCee
Q 037075 91 RSYAFVQFRSIISACRAKETLQGKLF 116 (806)
Q Consensus 91 KGyAFVeF~s~EdAekAleaLnG~~I 116 (806)
+|||||+|.+.++|++|++.+++...
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~~~ 38 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYANDNG 38 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHhHHHHHHhhcccCC
Confidence 79999999999999999999886543
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=77.52 E-value=4.2 Score=46.08 Aligned_cols=55 Identities=25% Similarity=0.235 Sum_probs=45.2
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcCCCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhC
Q 037075 54 SEVLWIGFPALLKVDEVILRKAFSPFGEIEKITVFPGRSYAFVQFRSIISACRAKETLQ 112 (806)
Q Consensus 54 S~tLfVGNLp~~~vTEedLrelFs~FGeI~~VrI~~dKGyAFVeF~s~EdAekAleaLn 112 (806)
..+|+|+ .+ ..+...+|.++|+.||.| .|+. -+..+|||.|.+.+.|..+++++.
T Consensus 440 ~~vl~v~-f~-~~~~~~~i~~~fs~fg~v-~V~w-iddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FP-KEWKTSDLYQLFSAFGNI-QISW-IDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CC-TTCCHHHHHHHGGGGCCC-EEEE-CSSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CC-CCCCHHHHHHHHHhcCCE-EEEE-EcCCeEEEEECCHHHHHHHHHHHH
Confidence 3588888 55 578899999999999954 4433 267899999999999999999985
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=62.35 E-value=15 Score=30.48 Aligned_cols=69 Identities=12% Similarity=0.141 Sum_probs=45.6
Q ss_pred EEEEecCCCCCCCHHHHHHhhcCCC-----CeeEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 037075 56 VLWIGFPALLKVDEVILRKAFSPFG-----EIEKITVFPGRSYAFVQFRSIISACRAKETLQGKLFGNPRVHICFAK 127 (806)
Q Consensus 56 tLfVGNLp~~~vTEedLrelFs~FG-----eI~~VrI~~dKGyAFVeF~s~EdAekAleaLnG~~I~GrrIrVefAK 127 (806)
+|||..--...+...+|..+++.-+ .|-.|.+. ..|.||+-.. +.|..+++.|++..+.|+.++|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 5677433323477778887777655 35567773 4599999886 55888999999999999999998764
No 224
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=21.07 E-value=19 Score=34.41 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=18.9
Q ss_pred HHHHHHhhcCCCCeeEEEEeCCCCEEEEEeC
Q 037075 69 EVILRKAFSPFGEIEKITVFPGRSYAFVQFR 99 (806)
Q Consensus 69 EedLrelFs~FGeI~~VrI~~dKGyAFVeF~ 99 (806)
++|+.++|...|.|+-... .|||+||+..
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~--~kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNV--RMGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEEET--TTTEEEEEEE
T ss_pred CCcccccccceeEEEEEEC--CCCeeEEeeC
Confidence 3566778888888765543 7999999976
Done!