BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037077
         (118 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
           Proteasome
          Length = 467

 Score = 36.2 bits (82), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 58/138 (42%)

Query: 28  PPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLCGIELCYKCV 87
           P  E DI +LK           S+   PY+  +K+ E ++K++  ++ +  G++     +
Sbjct: 28  PLTEGDIQVLK-----------SYGAAPYAAKLKQTENDLKDIEARIKEKAGVKESDTGL 76

Query: 88  HFTHL-----------------VARCTNIINLNSED------------------------ 106
             +HL                 VARCT II  N E                         
Sbjct: 77  APSHLWDIMGDRQRLGEEHPLQVARCTKIIKGNGESDETTTDNNNSGNSNSNSNQQSTDA 136

Query: 107 ------AKYVINVKQIAK 118
                 AKYVIN+KQIAK
Sbjct: 137 DEDDEDAKYVINLKQIAK 154


>pdb|2I02|A Chain A, Crystal Structure Of A Pyridoxamine 5'-Phosphate
           Oxidase-Like Family Protein (Npun_r6570) From Nostoc
           Punctiforme Pcc 73102 At 1.80 A Resolution
 pdb|2I02|B Chain B, Crystal Structure Of A Pyridoxamine 5'-Phosphate
           Oxidase-Like Family Protein (Npun_r6570) From Nostoc
           Punctiforme Pcc 73102 At 1.80 A Resolution
          Length = 148

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 26  PRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSI 60
           P+  DE DIALLK  I ++++ + + S  P + S 
Sbjct: 114 PKGLDEPDIALLKVNINQVNYWDSTSSFKPQTISF 148


>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
           In Complex With A Maltohexaose Inhibitor
 pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
           Thermosulfurigenes Em1 At Ph 8.0
          Length = 683

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 49  PSFSLGPYSTSIKKMEKEIKNMAKKVNDLCGIELCYKCV 87
           PS + G Y+ S+K       N    +N L G ++C + V
Sbjct: 551 PSVTPGKYNISLKTSSGATSNTYNNINILTGNQICVRFV 589


>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
           Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
 pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
           Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
           Complexed With A Maltoheptaose Inhibitor
          Length = 683

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 49  PSFSLGPYSTSIKKMEKEIKNMAKKVNDLCGIELCYKCV 87
           PS + G Y+ S+K       N    +N L G ++C + V
Sbjct: 551 PSVTPGKYNISLKTSSGATSNTYNNINILTGNQICVRFV 589


>pdb|1KUG|A Chain A, Crystal Structure Of A Taiwan Habu Venom
          Metalloproteinase Complexed With Its Endogenous
          Inhibitor Penw
          Length = 203

 Score = 25.4 bits (54), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 56 YSTSIKKMEKEIKNMAKKVNDLC 78
          YS++ KK+ K +  M   +N++C
Sbjct: 24 YSSNFKKIRKRVHQMVSNINEMC 46


>pdb|1KUF|A Chain A, High-Resolution Crystal Structure Of A Snake Venom
          Metalloproteinase From Taiwan Habu
 pdb|1KUI|A Chain A, Crystal Structure Of A Taiwan Habu Venom
          Metalloproteinase Complexed With Peqw.
 pdb|1KUK|A Chain A, Crystal Structure Of A Taiwan Habu Venom
          Metalloproteinase Complexed With Pekw
          Length = 203

 Score = 25.4 bits (54), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 56 YSTSIKKMEKEIKNMAKKVNDLC 78
          YS++ KK+ K +  M   +N++C
Sbjct: 24 YSSNFKKIRKRVHQMVSNINEMC 46


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,556,707
Number of Sequences: 62578
Number of extensions: 127971
Number of successful extensions: 398
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 11
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)