Query 037077
Match_columns 118
No_of_seqs 114 out of 129
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 08:26:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0729 26S proteasome regulat 100.0 3.2E-30 6.9E-35 217.7 7.3 99 9-118 6-122 (435)
2 KOG0728 26S proteasome regulat 99.0 1.9E-10 4.2E-15 97.6 1.5 61 55-115 21-99 (404)
3 COG1222 RPT1 ATP-dependent 26S 97.2 0.00087 1.9E-08 58.5 6.5 66 50-115 15-103 (406)
4 PTZ00454 26S protease regulato 90.7 0.61 1.3E-05 39.9 5.5 36 80-115 55-97 (398)
5 TIGR01242 26Sp45 26S proteasom 84.1 2.8 6.1E-05 34.4 5.5 57 59-115 7-74 (364)
6 PTZ00361 26 proteosome regulat 80.3 6 0.00013 34.6 6.4 36 80-115 93-135 (438)
7 PRK03992 proteasome-activating 74.8 7.9 0.00017 32.6 5.4 57 59-115 16-83 (389)
8 PF08068 DKCLD: DKCLD (NUC011) 64.4 3.4 7.5E-05 27.7 0.9 22 42-63 18-39 (59)
9 PF11359 gpUL132: Glycoprotein 61.9 3.4 7.5E-05 34.2 0.7 11 44-54 167-177 (235)
10 PF13720 Acetyltransf_11: Udp 61.1 7.2 0.00016 26.6 2.1 53 28-86 27-80 (83)
11 COG1308 EGD2 Transcription fac 42.3 56 0.0012 24.7 4.4 64 3-77 56-120 (122)
12 PF11641 Antigen_Bd37: Glycosy 40.0 50 0.0011 27.3 4.1 40 23-70 150-189 (224)
13 PRK11391 etp phosphotyrosine-p 39.9 44 0.00095 24.4 3.5 31 45-76 112-144 (144)
14 COG5145 RAD14 DNA excision rep 39.9 41 0.00088 28.6 3.7 41 56-96 226-281 (292)
15 COG0394 Wzb Protein-tyrosine-p 39.0 46 0.001 24.6 3.5 51 24-74 78-138 (139)
16 PRK10126 tyrosine phosphatase; 33.1 83 0.0018 22.8 4.0 29 46-75 113-143 (147)
17 cd06157 NR_LBD The ligand bind 31.6 1.3E+02 0.0027 20.4 4.5 21 28-52 99-119 (168)
18 PF13234 rRNA_proc-arch: rRNA- 30.4 22 0.00048 28.1 0.7 28 51-78 8-35 (268)
19 PF10046 BLOC1_2: Biogenesis o 30.3 79 0.0017 22.0 3.4 28 52-79 60-87 (99)
20 PF09845 DUF2072: Zn-ribbon co 28.7 38 0.00083 25.8 1.7 13 105-117 116-128 (131)
21 PF14282 FlxA: FlxA-like prote 28.0 1.1E+02 0.0023 21.7 3.7 24 55-78 16-39 (106)
22 KOG4519 Phosphomevalonate kina 26.7 68 0.0015 28.8 3.1 80 10-93 293-386 (459)
23 COG4911 Uncharacterized conser 26.6 1.6E+02 0.0034 22.4 4.6 43 57-99 43-92 (123)
24 PF08900 DUF1845: Domain of un 26.5 72 0.0016 25.4 2.9 49 51-99 54-104 (217)
25 PF02353 CMAS: Mycolic acid cy 25.0 53 0.0011 26.7 2.0 42 46-87 24-67 (273)
26 PF02465 FliD_N: Flagellar hoo 24.6 2.3E+02 0.0049 19.1 5.2 16 103-118 81-96 (99)
27 PRK14872 rod shape-determining 24.5 98 0.0021 26.7 3.6 36 80-115 261-304 (337)
28 PF10187 Nefa_Nip30_N: N-termi 24.4 62 0.0013 23.2 2.0 16 24-39 63-78 (102)
29 PRK09630 DNA topoisomerase IV 23.9 1.8E+02 0.0039 26.6 5.2 50 25-78 388-438 (479)
30 PF10392 COG5: Golgi transport 23.6 1.3E+02 0.0028 21.8 3.6 22 57-78 32-53 (132)
31 KOG1666 V-SNARE [Intracellular 23.5 1.1E+02 0.0023 25.4 3.5 35 43-78 58-92 (220)
32 PRK08307 stage III sporulation 22.7 92 0.002 23.7 2.8 51 27-77 101-151 (171)
33 PRK09570 rpoH DNA-directed RNA 22.7 65 0.0014 22.5 1.8 34 77-110 37-71 (79)
34 PF02861 Clp_N: Clp amino term 22.5 1.5E+02 0.0033 17.0 3.2 28 52-79 26-53 (53)
35 PF08060 NOSIC: NOSIC (NUC001) 22.3 29 0.00063 21.8 -0.0 43 59-101 8-52 (53)
36 PRK13922 rod shape-determining 22.0 1.2E+02 0.0026 24.1 3.4 29 88-117 231-259 (276)
37 PF14384 DUF4415: Domain of un 21.5 90 0.0019 20.1 2.2 25 27-63 33-57 (62)
38 TIGR00095 RNA methyltransferas 21.5 68 0.0015 24.3 1.9 18 44-61 124-141 (189)
39 PF01417 ENTH: ENTH domain; I 21.4 2E+02 0.0042 20.2 4.1 36 33-78 84-119 (125)
40 PF03602 Cons_hypoth95: Conser 21.4 68 0.0015 24.5 1.9 13 44-56 117-129 (183)
41 TIGR03689 pup_AAA proteasome A 20.8 1.9E+02 0.0042 26.1 4.8 36 80-115 34-76 (512)
42 TIGR03761 ICE_PFL4669 integrat 20.7 94 0.002 25.2 2.6 49 51-99 52-102 (216)
No 1
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.2e-30 Score=217.73 Aligned_cols=99 Identities=49% Similarity=0.711 Sum_probs=89.9
Q ss_pred hhhcCCCC-chhhhhcCCCCCCChhhHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHhCcccccccc
Q 037077 9 GKLWQLEP-EDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLCGIELCYKCV 87 (118)
Q Consensus 9 gk~~~~~~-~~~~~~~~~~~~lde~dI~lLk~~~~~~~~~~~~yg~gpYs~~Ik~lE~dIk~~~~~In~L~GiKEsdTGL 87 (118)
|.+.+..+ +++.++++++.||||+||++||+ ||+|||+..|+++|.+|+++.++||+++|+|||||||
T Consensus 6 ~~~~~~~~~~~~~~d~~~~~~l~e~di~~lk~-----------yg~~pya~~ik~~e~di~~l~~ki~~~~gikesdtgl 74 (435)
T KOG0729|consen 6 DDDKRKTPMHDEKEDDKPINPLDEGDIALLKS-----------YGQGPYAAQIKKVEADIEDLLKKINELTGIKESDTGL 74 (435)
T ss_pred cchhhcCccccchhhccCCCccchhhHHHHHH-----------hCCChhHHHHHHHHHHHHHHHHHHHHhhCccccccCC
Confidence 34444444 44555668889999999999999 9999999999999999999999999999999999999
Q ss_pred -----------------CCCceeeEEEeecCCCCCCcceEEeeccccC
Q 037077 88 -----------------HFTHLVARCTNIINLNSEDAKYVINVKQIAK 118 (118)
Q Consensus 88 -----------------E~pLqVArCtKII~~~~~e~KYVInIkqiAK 118 (118)
|||||||||||||++++.++|||||||||||
T Consensus 75 app~~wdl~~dkq~mq~eqplqvarctkii~~~~~d~~yvin~kqiak 122 (435)
T KOG0729|consen 75 APPALWDLAADKQRMQEEQPLQVARCTKIISGNSEDPKYVINVKQIAK 122 (435)
T ss_pred CChHHHHHhhhHHHhcccCCceeheeeeecCCCCCCcceeeeHHHHHH
Confidence 8999999999999999999999999999997
No 2
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.9e-10 Score=97.56 Aligned_cols=61 Identities=13% Similarity=0.266 Sum_probs=57.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHh----------C-cccccccc-CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077 55 PYSTSIKKMEKEIKNMAKKVNDLC----------G-IELCYKCV-HFTHLVARCTNIINLNS------EDAKYVINVKQ 115 (118)
Q Consensus 55 pYs~~Ik~lE~dIk~~~~~In~L~----------G-iKEsdTGL-E~pLqVArCtKII~~~~------~e~KYVInIkq 115 (118)
||+++|.++|..|.++++++++|. + +||+.+.| ||+++||+|+|.|++++ |+|||||||..
T Consensus 21 y~~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe~gsyvgev~k~m~k~kVLVKvhpegKyvvdv~k 99 (404)
T KOG0728|consen 21 YYLQKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQEPGSYVGEVVKAMGKKKVLVKVHPEGKYVVDVDK 99 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCcchHHHHHHhcCcceEEEEEcCCCcEEEeccC
Confidence 899999999999999999999998 5 89999999 99999999999999887 89999999863
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00087 Score=58.54 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=50.8
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHHHhCcccccccc-----------------CCCceeeEEEeecCCCC------CC
Q 037077 50 SFSLGPYSTSIKKMEKEIKNMAKKVNDLCGIELCYKCV-----------------HFTHLVARCTNIINLNS------ED 106 (118)
Q Consensus 50 ~yg~gpYs~~Ik~lE~dIk~~~~~In~L~GiKEsdTGL-----------------E~pLqVArCtKII~~~~------~e 106 (118)
+|...+|...+.+.+..+.+...++..+...+.+..++ ++||+||+|+++|+.+. ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~pl~vg~v~e~id~~~~iVks~~g 94 (406)
T COG1222 15 SYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDRLREEIERLKEPPLIVGTVLEVLDDGRAIVKSSTG 94 (406)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhcCCCceEEEEEEEcCCceEEEEeCCC
Confidence 38888999999999888888888888775433333332 89999999999998662 57
Q ss_pred cceEEeecc
Q 037077 107 AKYVINVKQ 115 (118)
Q Consensus 107 ~KYVInIkq 115 (118)
++|||++-+
T Consensus 95 ~~~vV~i~~ 103 (406)
T COG1222 95 PKFVVNILS 103 (406)
T ss_pred CeEEEeccC
Confidence 788888754
No 4
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=90.68 E-value=0.61 Score=39.86 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=25.7
Q ss_pred cccccccc-CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077 80 IELCYKCV-HFTHLVARCTNIINLNS------EDAKYVINVKQ 115 (118)
Q Consensus 80 iKEsdTGL-E~pLqVArCtKII~~~~------~e~KYVInIkq 115 (118)
++++..-| .+|+.||.|.++++.+. ..++|+|++..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 97 (398)
T PTZ00454 55 AKEEVKRIQSVPLVIGQFLEMIDSNYGIVSSTSGSNYYVRILS 97 (398)
T ss_pred HHHHHHHHhCCCceEEEEEEEEcCCEEEEEcCCCCEEEEeccc
Confidence 44444444 79999999999997653 45678887653
No 5
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=84.07 E-value=2.8 Score=34.42 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh----Ccccccccc-CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077 59 SIKKMEKEIKNMAKKVNDLC----GIELCYKCV-HFTHLVARCTNIINLNS------EDAKYVINVKQ 115 (118)
Q Consensus 59 ~Ik~lE~dIk~~~~~In~L~----GiKEsdTGL-E~pLqVArCtKII~~~~------~e~KYVInIkq 115 (118)
.+++++.+++++....+.+. .+++...-+ .+|+.+|+|.++++.+. +..+|++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (364)
T TIGR01242 7 RIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIVGTVLEVLDDNRVVVKSSTGPNFVVNVSA 74 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEecCCEEEEEeCCCCEEEEeccc
Confidence 34444444444444444333 133333333 78999999999998653 57788887654
No 6
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=80.28 E-value=6 Score=34.58 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=25.5
Q ss_pred cccccccc-CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077 80 IELCYKCV-HFTHLVARCTNIINLNS------EDAKYVINVKQ 115 (118)
Q Consensus 80 iKEsdTGL-E~pLqVArCtKII~~~~------~e~KYVInIkq 115 (118)
.++...-| .+|+.||+|.++++.+. ..+.|+|+|..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 135 (438)
T PTZ00361 93 ELKKVDDLRGSPLSVGTLEEIIDENHAIVSSSVGPEYYVNILS 135 (438)
T ss_pred HHHHHHHhhCCCcEEEEEEEEeCCCeEEEEeCCCCEEEEeccC
Confidence 44444444 79999999999998653 35568887654
No 7
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=74.84 E-value=7.9 Score=32.58 Aligned_cols=57 Identities=12% Similarity=0.283 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhC----cccccccc-CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077 59 SIKKMEKEIKNMAKKVNDLCG----IELCYKCV-HFTHLVARCTNIINLNS------EDAKYVINVKQ 115 (118)
Q Consensus 59 ~Ik~lE~dIk~~~~~In~L~G----iKEsdTGL-E~pLqVArCtKII~~~~------~e~KYVInIkq 115 (118)
.+++++..++++...++.+.. +++...-| .+|+.||+|.++++++. ...+|++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~g~~~~~~~~~ 83 (389)
T PRK03992 16 QIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDDGRVVVKSSGGPQFLVNVSP 83 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCCCeEEEEECCCCEEEEeccc
Confidence 334444444444443333331 33333334 58999999999998763 45568887654
No 8
>PF08068 DKCLD: DKCLD (NUC011) domain; InterPro: IPR012960 This is an N-terminal domain of dyskerin-like proteins, which is often associated with the TruB N-terminal(IPR002501 from INTERPRO) and PUA(IPR002478 from INTERPRO) domains [].; PDB: 3ZV0_D 3UAI_A 3U28_A 2AUS_C 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=64.44 E-value=3.4 Score=27.72 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=12.3
Q ss_pred hhhccCCCCCCCchhhhHHHHH
Q 037077 42 RKLSFLNPSFSLGPYSTSIKKM 63 (118)
Q Consensus 42 ~~~~~~~~~yg~gpYs~~Ik~l 63 (118)
|.-.|.||.||..|+...|++.
T Consensus 18 r~~~~T~~~~G~~P~~R~i~~~ 39 (59)
T PF08068_consen 18 RSEHYTPPPYGCSPLKRPIEEY 39 (59)
T ss_dssp SST----TTSS--GGGS-HHHH
T ss_pred EecccCCcccCcCcccCCHHHH
Confidence 4457889999999999999875
No 9
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=61.87 E-value=3.4 Score=34.24 Aligned_cols=11 Identities=45% Similarity=0.966 Sum_probs=10.1
Q ss_pred hccCCCCCCCc
Q 037077 44 LSFLNPSFSLG 54 (118)
Q Consensus 44 ~~~~~~~yg~g 54 (118)
.||.||.||+|
T Consensus 167 tsfvnpnyg~~ 177 (235)
T PF11359_consen 167 TSFVNPNYGRG 177 (235)
T ss_pred ceeeCCCCCCC
Confidence 49999999998
No 10
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=61.10 E-value=7.2 Score=26.65 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=34.8
Q ss_pred CCChhhHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHhC-ccccccc
Q 037077 28 PPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLCG-IELCYKC 86 (118)
Q Consensus 28 ~lde~dI~lLk~~~~~~~~~~~~yg~gpYs~~Ik~lE~dIk~~~~~In~L~G-iKEsdTG 86 (118)
-++.++|..|+.+.|.|-. +..+.++.+++++.+..+ ...+..++. |+.|..|
T Consensus 27 Gfs~~~i~~l~~ayr~l~~-----~~~~~~~a~~~l~~~~~~-~~~v~~~~~Fi~~S~RG 80 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFR-----SGLTLEEALEELEEEYPD-SPEVREIVDFIRNSKRG 80 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHT-----SSS-HHHHHHHHHHHTTS-CHHHHHHHHHHHHTSS-
T ss_pred CCCHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHhccC-CHHHHHHHHHHHhCCCC
Confidence 4788999999998777732 456888888888885544 445555554 5555544
No 11
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=42.26 E-value=56 Score=24.72 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=38.2
Q ss_pred HHHHHhhhhc-CCCCchhhhhcCCCCCCChhhHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 037077 3 EAVQQFGKLW-QLEPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDL 77 (118)
Q Consensus 3 ~~~~~~gk~~-~~~~~~~~~~~~~~~~lde~dI~lLk~~~~~~~~~~~~yg~gpYs~~Ik~lE~dIk~~~~~In~L 77 (118)
+..|-.|+.- +-.++++++.......++++||.|.-. =-.-++...|+.|+.-=-++.+-|-+|
T Consensus 56 ~~yqi~g~~~~~~~~~~~ee~~~d~~~i~eeDIkLV~e-----------Qa~VsreeA~kAL~e~~GDlaeAIm~L 120 (122)
T COG1308 56 KTYQISGDPSAKEAVKKPEEKTVDESDISEEDIKLVME-----------QAGVSREEAIKALEEAGGDLAEAIMKL 120 (122)
T ss_pred hHHHHhcchhhhcccccchhcccccCCCCHHHHHHHHH-----------HhCCCHHHHHHHHHHcCCcHHHHHHHh
Confidence 3455566642 112222222222234699999999876 345577888888887666666666554
No 12
>PF11641 Antigen_Bd37: Glycosylphosphatidylinositol-anchored merozoite surface protein; InterPro: IPR021669 This family of proteins represents the core region of Bd37, a surface antigen of B.divergens which is GPI-anchored at the surface of the merozoite. The structure of the protein consists of mainly alpha folds and has three sub domains []. ; PDB: 2JO7_A.
Probab=39.97 E-value=50 Score=27.33 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=27.1
Q ss_pred cCCCCCCChhhHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHH
Q 037077 23 EKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNM 70 (118)
Q Consensus 23 ~~~~~~lde~dI~lLk~~~~~~~~~~~~yg~gpYs~~Ik~lE~dIk~~ 70 (118)
+-++.+|+-+||.-.-+ -|-||..--+.+-|++|..|.++
T Consensus 150 ~~~p~flt~edis~~Lt--------vPeYG~pmna~kwk~vE~kI~dk 189 (224)
T PF11641_consen 150 ALSPTFLTSEDISGYLT--------VPEYGAPMNAAKWKKVEKKISDK 189 (224)
T ss_dssp HSSS--S-HHHHHHHHH----------STT--TTT-HHHHHHHHHHHH
T ss_pred hcCCCcccHHHHhhhhc--------CcccCCCccHHHHHHHHHHHhhh
Confidence 34667899999987776 39999999999999999999874
No 13
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=39.94 E-value=44 Score=24.43 Aligned_cols=31 Identities=13% Similarity=0.344 Sum_probs=23.5
Q ss_pred ccCCCCCCCch--hhhHHHHHHHHHHHHHHHHHH
Q 037077 45 SFLNPSFSLGP--YSTSIKKMEKEIKNMAKKVND 76 (118)
Q Consensus 45 ~~~~~~yg~gp--Ys~~Ik~lE~dIk~~~~~In~ 76 (118)
.+-|| ||.+. |..-..+++.-++.+.+++++
T Consensus 112 ~I~DP-y~~~~~~f~~~~~~I~~~i~~ll~~l~~ 144 (144)
T PRK11391 112 EIPDP-YRKSQDAFEHVYGMLERASQEWAKRLSR 144 (144)
T ss_pred CCCCC-ccCCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45678 55566 888888999888888887653
No 14
>COG5145 RAD14 DNA excision repair protein [DNA replication, recombination, and repair]
Probab=39.86 E-value=41 Score=28.60 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh----Ccccccccc-----------CCCceeeEE
Q 037077 56 YSTSIKKMEKEIKNMAKKVNDLC----GIELCYKCV-----------HFTHLVARC 96 (118)
Q Consensus 56 Ys~~Ik~lE~dIk~~~~~In~L~----GiKEsdTGL-----------E~pLqVArC 96 (118)
-..+++++|+.|+++..+-+--. .|+|+.... |+|.+|-||
T Consensus 226 ~~rkekK~ekkikelR~kTrt~~ysrm~vRek~kHvH~f~e~vdg~~e~g~~iqRC 281 (292)
T COG5145 226 DDRKEKKLEKKIKELRRKTRTSNYSRMDVREKEKHVHVFDEFVDGPNEPGVIIQRC 281 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccchhhhhhhcceeeccccccCCCCCCeEEEec
Confidence 34577888888888766553221 267766655 899999999
No 15
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=39.01 E-value=46 Score=24.57 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=36.7
Q ss_pred CCCCCCChhhHHHHHHHHhh---------hccCCCCCCCc-hhhhHHHHHHHHHHHHHHHH
Q 037077 24 KNPRPPDEDDIALLKTCIRK---------LSFLNPSFSLG-PYSTSIKKMEKEIKNMAKKV 74 (118)
Q Consensus 24 ~~~~~lde~dI~lLk~~~~~---------~~~~~~~yg~g-pYs~~Ik~lE~dIk~~~~~I 74 (118)
.-+..||++.++.|...-.. ..+-||+||.| -|......++..|+.+.+++
T Consensus 78 DlIitmd~~~~~~~~~~~p~~~~~~~~~~~~v~DP~~~~~e~~~~~~~~i~~~~~~l~~~l 138 (139)
T COG0394 78 DLIITMDESNAADLCPLAPGNTLLLEYEHWEVPDPYYGSGEEFEEVYRLIEDAIKALLKRL 138 (139)
T ss_pred CEEEEeChHHHhhHhhcCccccccccccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 34457888888777653221 33669999876 78888999999998887765
No 16
>PRK10126 tyrosine phosphatase; Provisional
Probab=33.06 E-value=83 Score=22.79 Aligned_cols=29 Identities=14% Similarity=0.381 Sum_probs=22.5
Q ss_pred cCCCCCCCch--hhhHHHHHHHHHHHHHHHHH
Q 037077 46 FLNPSFSLGP--YSTSIKKMEKEIKNMAKKVN 75 (118)
Q Consensus 46 ~~~~~yg~gp--Ys~~Ik~lE~dIk~~~~~In 75 (118)
+.|| ||.+. |..-..+++..++.+.++|+
T Consensus 113 I~DP-~~~~~~~f~~~~~~I~~~i~~l~~~l~ 143 (147)
T PRK10126 113 IPDP-YRKSREAFEAVYTLLERSARQWAQALN 143 (147)
T ss_pred CCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678 56565 88888888888888887765
No 17
>cd06157 NR_LBD The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators. Ligand-binding domain (LBD) of nuclear receptor (NR): Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions in metazoans, from development, reproduction, to homeostasis and metabolism. The superfamily contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. The members of the family include receptors of steroids, thyroid hormone, retinoids, cholesterol by-products, lipids and heme. With few exceptions, NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserved hinge and a C-terminal ligand binding domain (LBD).
Probab=31.57 E-value=1.3e+02 Score=20.42 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=17.9
Q ss_pred CCChhhHHHHHHHHhhhccCCCCCC
Q 037077 28 PPDEDDIALLKTCIRKLSFLNPSFS 52 (118)
Q Consensus 28 ~lde~dI~lLk~~~~~~~~~~~~yg 52 (118)
-+|+.|+++|+. +.|+||.+-
T Consensus 99 ~l~~~E~~~l~a----i~l~~~~~~ 119 (168)
T cd06157 99 KLDDEEYALLKA----IVLFSPDRK 119 (168)
T ss_pred CCCHHHHHHHHH----HHHhCCCCC
Confidence 489999999997 788999874
No 18
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=30.43 E-value=22 Score=28.12 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=17.8
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHh
Q 037077 51 FSLGPYSTSIKKMEKEIKNMAKKVNDLC 78 (118)
Q Consensus 51 yg~gpYs~~Ik~lE~dIk~~~~~In~L~ 78 (118)
|.+-.-...+-++|+.++++++.++.+.
T Consensus 8 F~qfq~~~~lP~~~~~~~~~e~~~~~i~ 35 (268)
T PF13234_consen 8 FSQFQNQRKLPELEKKLKELEEELDAIK 35 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHcccccCHHHHHHHHHHHHHHHhcc
Confidence 5555555667777777777777766554
No 19
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=30.26 E-value=79 Score=22.01 Aligned_cols=28 Identities=25% Similarity=0.535 Sum_probs=24.4
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhC
Q 037077 52 SLGPYSTSIKKMEKEIKNMAKKVNDLCG 79 (118)
Q Consensus 52 g~gpYs~~Ik~lE~dIk~~~~~In~L~G 79 (118)
+..||-..|-.+|.++..+.+-+.+|-.
T Consensus 60 ~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ 87 (99)
T PF10046_consen 60 ELQPYLQQIDQIEEQVTELEQTVYELDE 87 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999888753
No 20
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=28.72 E-value=38 Score=25.85 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=10.4
Q ss_pred CCcceEEeecccc
Q 037077 105 EDAKYVINVKQIA 117 (118)
Q Consensus 105 ~e~KYVInIkqiA 117 (118)
.+|+|+|++-.+.
T Consensus 116 eeG~Y~idlps~~ 128 (131)
T PF09845_consen 116 EEGRYVIDLPSMF 128 (131)
T ss_pred CCceEEEEChHhh
Confidence 6999999987654
No 21
>PF14282 FlxA: FlxA-like protein
Probab=27.97 E-value=1.1e+02 Score=21.73 Aligned_cols=24 Identities=21% Similarity=0.546 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHh
Q 037077 55 PYSTSIKKMEKEIKNMAKKVNDLC 78 (118)
Q Consensus 55 pYs~~Ik~lE~dIk~~~~~In~L~ 78 (118)
-....|+.|+..|+.+.+.|..|.
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~ 39 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELS 39 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348899999999999999999886
No 22
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=26.68 E-value=68 Score=28.84 Aligned_cols=80 Identities=20% Similarity=0.214 Sum_probs=50.9
Q ss_pred hhcCCCCchhhhhcCCCCCCChhhHHHHHHHHhhhccCCCCCCCchhhhHHHHHH------------HHHHHHHHHHHHH
Q 037077 10 KLWQLEPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKME------------KEIKNMAKKVNDL 77 (118)
Q Consensus 10 k~~~~~~~~~~~~~~~~~~lde~dI~lLk~~~~~~~~~~~~yg~gpYs~~Ik~lE------------~dIk~~~~~In~L 77 (118)
|.|+.+.. .+.-++-.-||+.--.++-. +.||+-|--+ --.+|-.-|+.++ .+.++...+|+++
T Consensus 293 k~Wq~s~~--pe~~k~~~~lddansr~~~~-l~kl~~l~~~-h~d~~~~v~eSl~~~~~~~~~~~e~~E~r~a~~~IRr~ 368 (459)
T KOG4519|consen 293 KKWQMSDP--PEARKNWQNLDDANSRLETK-LNKLSKLAKD-HWDVYLRVIESLSVLTINEAIIKELLEAREAMLRIRRL 368 (459)
T ss_pred HHHhhcCC--hhHhhhhcchhhHHHHHHhh-hhhhhHhhhh-chhHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence 56876532 12234444688776655542 3344333222 2357888888888 7888888999999
Q ss_pred hC--ccccccccCCCcee
Q 037077 78 CG--IELCYKCVHFTHLV 93 (118)
Q Consensus 78 ~G--iKEsdTGLE~pLqV 93 (118)
++ .+|+---.||+.|-
T Consensus 369 ~r~it~ea~vdIEP~~QT 386 (459)
T KOG4519|consen 369 MRQITEEASVDIEPESQT 386 (459)
T ss_pred HHHHHHhhCCCCCchhhh
Confidence 97 56666666888874
No 23
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=26.64 E-value=1.6e+02 Score=22.44 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhC-cccccccc------CCCceeeEEEee
Q 037077 57 STSIKKMEKEIKNMAKKVNDLCG-IELCYKCV------HFTHLVARCTNI 99 (118)
Q Consensus 57 s~~Ik~lE~dIk~~~~~In~L~G-iKEsdTGL------E~pLqVArCtKI 99 (118)
...++++|.+++.+.+.+-++-+ ||.-|-|| -.+-.|==|=|+
T Consensus 43 k~~l~e~e~q~k~~l~~i~e~G~iird~d~glVDFpa~~Ng~~~~lCWK~ 92 (123)
T COG4911 43 KYALQEYESQTKKILDEIIEKGIIIRDIDIGLVDFPAIINGKPAFLCWKI 92 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCceeeccccccccchhhhCCceEEEEEec
Confidence 34699999999999999999988 99999999 355566667776
No 24
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=26.52 E-value=72 Score=25.35 Aligned_cols=49 Identities=10% Similarity=0.225 Sum_probs=35.7
Q ss_pred CCCchhhh-HHHHHHHHHHHHHHHHHHHhC-ccccccccCCCceeeEEEee
Q 037077 51 FSLGPYST-SIKKMEKEIKNMAKKVNDLCG-IELCYKCVHFTHLVARCTNI 99 (118)
Q Consensus 51 yg~gpYs~-~Ik~lE~dIk~~~~~In~L~G-iKEsdTGLE~pLqVArCtKI 99 (118)
-.-.||++ .+-++|..|.+..+.++.+.. +.+....+..++.+++|+-+
T Consensus 54 ~~DdPyAD~~L~~iEe~i~~~~~~l~~~~~~l~~~l~~~p~~i~i~~~~s~ 104 (217)
T PF08900_consen 54 RQDDPYADWWLLRIEEKINEARQELQELIARLDALLAELPKGISISEIQSV 104 (217)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCccccccccC
Confidence 34568888 788999999999988888874 55555555667777777544
No 25
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=25.03 E-value=53 Score=26.68 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=26.1
Q ss_pred cCCCC--CCCchhhhHHHHHHHHHHHHHHHHHHHhCcccccccc
Q 037077 46 FLNPS--FSLGPYSTSIKKMEKEIKNMAKKVNDLCGIELCYKCV 87 (118)
Q Consensus 46 ~~~~~--yg~gpYs~~Ik~lE~dIk~~~~~In~L~GiKEsdTGL 87 (118)
||+|+ |+.|+|.+.=..+|.--..+.+.+-+.++|+..++-|
T Consensus 24 ~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vL 67 (273)
T PF02353_consen 24 FLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVL 67 (273)
T ss_dssp TS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEE
T ss_pred hcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 66664 9999999988888888888888888888999998888
No 26
>PF02465 FliD_N: Flagellar hook-associated protein 2 N-terminus; InterPro: IPR003481 The flagellar hook-associated protein 2 (HAP2 or FliD) is the capping protein for the flagella and forms the distal end of the flagella. The protein plays a role in mucin specific adhesion of the bacteria [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum
Probab=24.60 E-value=2.3e+02 Score=19.05 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=13.2
Q ss_pred CCCCcceEEeeccccC
Q 037077 103 NSEDAKYVINVKQIAK 118 (118)
Q Consensus 103 ~~~e~KYVInIkqiAK 118 (118)
+...|-|-|.|.|.|+
T Consensus 81 ~A~~gsy~i~V~qLA~ 96 (99)
T PF02465_consen 81 GASAGSYSIEVNQLAQ 96 (99)
T ss_pred CCcceeEEEEeeehhc
Confidence 3468899999999985
No 27
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=24.54 E-value=98 Score=26.73 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=24.5
Q ss_pred ccccc----ccc----CCCceeeEEEeecCCCCCCcceEEeecc
Q 037077 80 IELCY----KCV----HFTHLVARCTNIINLNSEDAKYVINVKQ 115 (118)
Q Consensus 80 iKEsd----TGL----E~pLqVArCtKII~~~~~e~KYVInIkq 115 (118)
|+.-| +|| -+++.||+|++|-.+.....+|-|.+.+
T Consensus 261 i~~GD~lVTSGlgGvfP~Gl~Vg~V~~V~~~~~g~~~~~i~~~~ 304 (337)
T PRK14872 261 LRVGDILVTTGLDGVFPPGLLVATVTKVLPPREGACSYKIEAQS 304 (337)
T ss_pred cCCCCEEEECCCCCcCCCCCEEEEEEEEEECCCCCeeeEEEEEe
Confidence 66666 344 7899999999998644444555555544
No 28
>PF10187 Nefa_Nip30_N: N-terminal domain of NEFA-interacting nuclear protein NIP30; InterPro: IPR019331 This is a the N-terminal 100 amino acids of a family of proteins conserved from plants to humans. The full-length protein has putatively been called NEFA-interacting nuclear protein NIP30, however no reference could be found to confirm this.
Probab=24.44 E-value=62 Score=23.17 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=13.7
Q ss_pred CCCCCCChhhHHHHHH
Q 037077 24 KNPRPPDEDDIALLKT 39 (118)
Q Consensus 24 ~~~~~lde~dI~lLk~ 39 (118)
+.+++||+++|..|..
T Consensus 63 n~~r~LDedE~eFLd~ 78 (102)
T PF10187_consen 63 NQFRGLDEDEIEFLDE 78 (102)
T ss_pred cccCCCCHHHHHHHHH
Confidence 3448999999999997
No 29
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=23.91 E-value=1.8e+02 Score=26.57 Aligned_cols=50 Identities=26% Similarity=0.429 Sum_probs=39.8
Q ss_pred CCCCCChhhHHHHHH-HHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHh
Q 037077 25 NPRPPDEDDIALLKT-CIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLC 78 (118)
Q Consensus 25 ~~~~lde~dI~lLk~-~~~~~~~~~~~yg~gpYs~~Ik~lE~dIk~~~~~In~L~ 78 (118)
-.++.+++||..|-. .|+++|- |-..-+...|+.+|.+|++...++..|.
T Consensus 388 ~~r~v~~~d~~~l~~i~i~ri~~----fd~~k~~~~~~~~~~~~~~~~~~l~~~~ 438 (479)
T PRK09630 388 LPTPVDKQATAQLASLTIKKILC----FNENSYTKELACIEKKQAAVQKDLSQLK 438 (479)
T ss_pred ccCCCCHHHHHHHhhhhHHHhhh----cCHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999876653 4566665 5667889999999999999999999887
No 30
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=23.60 E-value=1.3e+02 Score=21.75 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 037077 57 STSIKKMEKEIKNMAKKVNDLC 78 (118)
Q Consensus 57 s~~Ik~lE~dIk~~~~~In~L~ 78 (118)
+..++++--+|.++.+.|..+.
T Consensus 32 ~~~l~kL~~~i~eld~~i~~~v 53 (132)
T PF10392_consen 32 STPLKKLNFDIQELDKRIRSQV 53 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777776655
No 31
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.52 E-value=1.1e+02 Score=25.41 Aligned_cols=35 Identities=14% Similarity=0.453 Sum_probs=31.3
Q ss_pred hhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHh
Q 037077 43 KLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLC 78 (118)
Q Consensus 43 ~~~~~~~~yg~gpYs~~Ik~lE~dIk~~~~~In~L~ 78 (118)
.+..+.|++ +++|..++++.-.+++++...+++..
T Consensus 58 Evr~lp~~~-Rs~~~~KlR~yksdl~~l~~e~k~~~ 92 (220)
T KOG1666|consen 58 EVRELPPNF-RSSYLSKLREYKSDLKKLKRELKRTT 92 (220)
T ss_pred HHHhCCchh-hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456789998 99999999999999999999888876
No 32
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=22.70 E-value=92 Score=23.70 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=27.8
Q ss_pred CCCChhhHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 037077 27 RPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDL 77 (118)
Q Consensus 27 ~~lde~dI~lLk~~~~~~~~~~~~yg~gpYs~~Ik~lE~dIk~~~~~In~L 77 (118)
..|.++|+.+|+..-+.|.+.|-.=-.....-.+++++.++.+..+..++.
T Consensus 101 ~~L~~~d~eiL~~lg~~LG~~D~e~Q~k~i~L~~e~L~~~~~~a~~~~~k~ 151 (171)
T PRK08307 101 TALKKEDIEILLQFGKTLGQSDREGQQKHIRLALEHLEREEEEAEEEQKKN 151 (171)
T ss_pred cCCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 479999999999843333333322112233334455555555555544443
No 33
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=22.69 E-value=65 Score=22.51 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=24.4
Q ss_pred HhCcccccccc-CCCceeeEEEeecCCCCCCcceE
Q 037077 77 LCGIELCYKCV-HFTHLVARCTNIINLNSEDAKYV 110 (118)
Q Consensus 77 L~GiKEsdTGL-E~pLqVArCtKII~~~~~e~KYV 110 (118)
|=.|..+|--. .-++..|.++||+.++..-|+||
T Consensus 37 LP~I~~~DPv~r~~g~k~GdVvkI~R~S~taG~~v 71 (79)
T PRK09570 37 LPKIKASDPVVKAIGAKPGDVIKIVRKSPTAGEAV 71 (79)
T ss_pred CCceeccChhhhhcCCCCCCEEEEEECCCCCCccE
Confidence 44566666655 56889999999997766566654
No 34
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=22.49 E-value=1.5e+02 Score=17.04 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=22.5
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhC
Q 037077 52 SLGPYSTSIKKMEKEIKNMAKKVNDLCG 79 (118)
Q Consensus 52 g~gpYs~~Ik~lE~dIk~~~~~In~L~G 79 (118)
+.|.+..-++++-.+...+.+.|.+..|
T Consensus 26 ~~~~~~~il~~~~id~~~l~~~i~~~lg 53 (53)
T PF02861_consen 26 PDSIAARILKKLGIDPEQLKAAIEKALG 53 (53)
T ss_dssp TTSHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 6678888888888888888888877654
No 35
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=22.32 E-value=29 Score=21.85 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhC--ccccccccCCCceeeEEEeecC
Q 037077 59 SIKKMEKEIKNMAKKVNDLCG--IELCYKCVHFTHLVARCTNIIN 101 (118)
Q Consensus 59 ~Ik~lE~dIk~~~~~In~L~G--iKEsdTGLE~pLqVArCtKII~ 101 (118)
-+.+++++|.....++++.-| --|-++.+..|.+=++++++|+
T Consensus 8 l~~~id~ei~~~~~~lre~Y~~~FPEL~~lv~~~~~Y~~vV~~i~ 52 (53)
T PF08060_consen 8 LLDDIDKEINLLHMRLREWYSWHFPELESLVPNPIDYAKVVKIIG 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSTTHHHHS-SHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchhHHHHcCCHHHHHHHHHHhc
Confidence 467889999999999999887 5677777777777777777775
No 36
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=22.03 E-value=1.2e+02 Score=24.07 Aligned_cols=29 Identities=17% Similarity=0.062 Sum_probs=19.2
Q ss_pred CCCceeeEEEeecCCCCCCcceEEeecccc
Q 037077 88 HFTHLVARCTNIINLNSEDAKYVINVKQIA 117 (118)
Q Consensus 88 E~pLqVArCtKII~~~~~e~KYVInIkqiA 117 (118)
-+++.||+++++-. +....-+.|.|++.|
T Consensus 231 P~Gi~VG~V~~v~~-~~~~~~~~~~v~p~~ 259 (276)
T PRK13922 231 PAGLPVGKVTSVER-DDYGLFKTVYVKPAA 259 (276)
T ss_pred CCCCEEEEEEEEEe-CCCCCeeEEEEEECc
Confidence 67899999999943 222334566666654
No 37
>PF14384 DUF4415: Domain of unknown function (DUF4415)
Probab=21.54 E-value=90 Score=20.13 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=20.2
Q ss_pred CCCChhhHHHHHHHHhhhccCCCCCCCchhhhHHHHH
Q 037077 27 RPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKM 63 (118)
Q Consensus 27 ~~lde~dI~lLk~~~~~~~~~~~~yg~gpYs~~Ik~l 63 (118)
..||.+-|+.+|. -|.| |...|.++
T Consensus 33 irld~dVl~~fka-----------~G~g-yQtriN~~ 57 (62)
T PF14384_consen 33 IRLDPDVLEWFKA-----------QGKG-YQTRINEA 57 (62)
T ss_pred EEeCHHHHHHHHH-----------HChh-HHHHHHHH
Confidence 3599999999999 6999 77766554
No 38
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=21.49 E-value=68 Score=24.34 Aligned_cols=18 Identities=22% Similarity=0.558 Sum_probs=13.1
Q ss_pred hccCCCCCCCchhhhHHH
Q 037077 44 LSFLNPSFSLGPYSTSIK 61 (118)
Q Consensus 44 ~~~~~~~yg~gpYs~~Ik 61 (118)
+-|+||.|+.+.|..-++
T Consensus 124 vv~~DPPy~~~~~~~~l~ 141 (189)
T TIGR00095 124 VIYLDPPFFNGALQALLE 141 (189)
T ss_pred EEEECcCCCCCcHHHHHH
Confidence 458999999877654443
No 39
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=21.43 E-value=2e+02 Score=20.20 Aligned_cols=36 Identities=14% Similarity=0.418 Sum_probs=23.0
Q ss_pred hHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHh
Q 037077 33 DIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLC 78 (118)
Q Consensus 33 dI~lLk~~~~~~~~~~~~yg~gpYs~~Ik~lE~dIk~~~~~In~L~ 78 (118)
.+..++. ++..++.+| .|.-++.. |++.++.|-+|+
T Consensus 84 ~~~~I~~-l~~f~~~d~-~g~d~~~~--------VR~~A~~i~~lL 119 (125)
T PF01417_consen 84 HIDIIRE-LQDFQYVDP-KGKDQGQN--------VREKAKEILELL 119 (125)
T ss_dssp THHHHHG-GGG---BBT-TSTBHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHhh-cceeeccCC-CCccHHHH--------HHHHHHHHHHHh
Confidence 4555664 466777788 88888876 777777776664
No 40
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=21.40 E-value=68 Score=24.45 Aligned_cols=13 Identities=38% Similarity=0.984 Sum_probs=9.4
Q ss_pred hccCCCCCCCchh
Q 037077 44 LSFLNPSFSLGPY 56 (118)
Q Consensus 44 ~~~~~~~yg~gpY 56 (118)
+-|+||.|..+.|
T Consensus 117 iIflDPPY~~~~~ 129 (183)
T PF03602_consen 117 IIFLDPPYAKGLY 129 (183)
T ss_dssp EEEE--STTSCHH
T ss_pred EEEECCCcccchH
Confidence 6799999999985
No 41
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=20.80 E-value=1.9e+02 Score=26.07 Aligned_cols=36 Identities=6% Similarity=0.047 Sum_probs=25.5
Q ss_pred cccccccc-CCCceeeEEEee-cCCCC-----CCcceEEeecc
Q 037077 80 IELCYKCV-HFTHLVARCTNI-INLNS-----EDAKYVINVKQ 115 (118)
Q Consensus 80 iKEsdTGL-E~pLqVArCtKI-I~~~~-----~e~KYVInIkq 115 (118)
++|...-| +||+..|.+.+. .+.++ ...||.|.|.+
T Consensus 34 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 76 (512)
T TIGR03689 34 LKSQLEQLAQPPSTYGTFLQTAIDDETAEVFTAGRRMRVTVSP 76 (512)
T ss_pred HHHHHHHhcCCCcceEEEEEeccCCCeEEEEeCCceEEEEeCC
Confidence 45555555 899999999988 54433 35578888765
No 42
>TIGR03761 ICE_PFL4669 integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=20.66 E-value=94 Score=25.16 Aligned_cols=49 Identities=8% Similarity=0.148 Sum_probs=37.3
Q ss_pred CCCchhhh-HHHHHHHHHHHHHHHHHHHhC-ccccccccCCCceeeEEEee
Q 037077 51 FSLGPYST-SIKKMEKEIKNMAKKVNDLCG-IELCYKCVHFTHLVARCTNI 99 (118)
Q Consensus 51 yg~gpYs~-~Ik~lE~dIk~~~~~In~L~G-iKEsdTGLE~pLqVArCtKI 99 (118)
..-.||++ -+-++|..|.+....++.+.. +......|.+++.+++|..+
T Consensus 52 ~~DdPyAD~~Ll~~E~~l~~~~~~l~~~~~~l~~~l~~~p~~l~ls~~~s~ 102 (216)
T TIGR03761 52 EQDDPYADWALLRIEEKLLSARQEMQALLQRLDDLLAQLPPALDLSENLSV 102 (216)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhccCC
Confidence 45568888 788999999999998888875 76666666667777777554
Done!