Query 037077
Match_columns 118
No_of_seqs 114 out of 129
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 14:06:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_H 26S protease regulatory 99.9 7.6E-23 2.6E-27 174.9 4.5 87 21-118 21-154 (467)
2 4b4t_J 26S protease regulatory 97.7 5.1E-05 1.7E-09 63.8 5.6 62 54-115 21-100 (405)
3 2wg5_A General control protein 97.5 0.00016 5.4E-09 50.9 5.6 54 59-115 8-68 (109)
4 3h43_A Proteasome-activating n 95.7 0.0042 1.4E-07 42.1 1.9 29 88-116 16-50 (85)
5 3m9b_A Proteasome-associated A 94.1 0.038 1.3E-06 44.6 3.7 59 57-115 53-128 (251)
6 4b4t_L 26S protease subunit RP 91.9 0.19 6.7E-06 42.1 4.9 55 61-115 68-133 (437)
7 4b4t_I 26S protease regulatory 68.6 12 0.00042 31.7 6.6 28 88-115 101-134 (437)
8 4b4t_K 26S protease regulatory 65.0 7.9 0.00027 32.2 4.7 36 80-115 82-124 (428)
9 2er8_A Regulatory protein Leu3 52.4 15 0.00052 22.2 3.3 30 48-77 39-68 (72)
10 2yko_A LINE-1 ORF1P; RNA-bindi 49.3 33 0.0011 27.2 5.6 54 58-111 27-115 (233)
11 2l5g_B Putative uncharacterize 41.5 30 0.001 21.1 3.3 22 57-78 15-36 (42)
12 2oo3_A Protein involved in cat 37.2 17 0.00058 29.1 2.2 24 42-65 160-184 (283)
13 1zme_C Proline utilization tra 34.3 37 0.0013 20.2 3.0 22 58-79 44-65 (70)
14 2jo7_A Glycosylphosphatidylino 34.0 61 0.0021 25.7 4.9 41 23-71 150-190 (224)
15 1iq5_B Ca2+/calmodulin depende 33.9 28 0.00097 19.3 2.1 20 31-50 7-26 (27)
16 1hmj_A RPB5, protein (subunit 33.0 17 0.00057 24.4 1.3 34 77-110 34-68 (78)
17 3tso_C RAB11 family-interactin 32.7 28 0.00095 23.5 2.4 47 48-94 3-66 (75)
18 3qks_A DNA double-strand break 30.2 74 0.0025 22.7 4.5 33 47-79 157-189 (203)
19 3htk_B Structural maintenance 29.4 53 0.0018 20.7 3.2 23 56-78 2-24 (73)
20 3o6q_B Stage II sporulation pr 25.1 52 0.0018 21.1 2.5 15 48-62 28-42 (56)
21 1gmj_A ATPase inhibitor; coile 24.6 69 0.0024 21.8 3.2 22 57-78 57-78 (84)
22 4etm_A LMPTP, low molecular we 24.5 35 0.0012 24.7 1.9 28 48-76 142-169 (173)
23 1p8a_A Protein tyrosine phosph 24.0 57 0.002 22.5 2.9 31 45-75 114-144 (146)
24 3rof_A Low molecular weight pr 22.7 48 0.0016 23.8 2.3 32 45-77 122-153 (158)
25 2l3l_A Tubulin-specific chaper 21.9 79 0.0027 21.9 3.2 43 32-74 65-107 (111)
26 2yy0_A C-MYC-binding protein; 21.8 80 0.0027 19.3 2.9 26 53-78 14-39 (53)
27 3r0s_A Acyl-[acyl-carrier-prot 21.5 32 0.0011 25.7 1.2 51 29-87 206-257 (266)
28 1t3j_A Mitofusin 1; coiled coi 20.7 58 0.002 22.6 2.3 21 59-79 48-68 (96)
No 1
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=7.6e-23 Score=174.91 Aligned_cols=87 Identities=38% Similarity=0.651 Sum_probs=52.3
Q ss_pred hhcCCCCCCChhhHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHhCcccccccc-------------
Q 037077 21 KEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLCGIELCYKCV------------- 87 (118)
Q Consensus 21 ~~~~~~~~lde~dI~lLk~~~~~~~~~~~~yg~gpYs~~Ik~lE~dIk~~~~~In~L~GiKEsdTGL------------- 87 (118)
.+++.+.||||+||++||+ ||+|||+.+||++|.+|+.+.+++|++||+|||||||
T Consensus 21 ~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 89 (467)
T 4b4t_H 21 PDDDKIVPLTEGDIQVLKS-----------YGAAPYAAKLKQTENDLKDIEARIKEKAGVKESDTGLAPSHLWDIMGDRQ 89 (467)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHTTTC------------
T ss_pred cccccCCCCCHHHHHHHHH-----------hCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCcccccchhchH
Confidence 3456678999999999999 9999999999999999999999999999999999999
Q ss_pred ----CCCceeeEEEeecCCC------------------------------CCCcceEEeeccccC
Q 037077 88 ----HFTHLVARCTNIINLN------------------------------SEDAKYVINVKQIAK 118 (118)
Q Consensus 88 ----E~pLqVArCtKII~~~------------------------------~~e~KYVInIkqiAK 118 (118)
|+|||||||||||.++ +++.||+|++++.+|
T Consensus 90 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 154 (467)
T 4b4t_H 90 RLGEEHPLQVARCTKIIKGNGESDETTTDNNNSGNSNSNSNQQSTDADEDDEDAKYVINLKQIAK 154 (467)
T ss_dssp -----CCSSSEEEEECCCC--------------------------------CCCCCEEEETTSCC
T ss_pred HhccccchhHhhhHhHhccccccccccccccccccccccccccCccccccCCCCcEEEEecCCCe
Confidence 7999999999999543 247799999998775
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=5.1e-05 Score=63.79 Aligned_cols=62 Identities=18% Similarity=0.301 Sum_probs=49.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhC-----------cccccccc-CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077 54 GPYSTSIKKMEKEIKNMAKKVNDLCG-----------IELCYKCV-HFTHLVARCTNIINLNS------EDAKYVINVKQ 115 (118)
Q Consensus 54 gpYs~~Ik~lE~dIk~~~~~In~L~G-----------iKEsdTGL-E~pLqVArCtKII~~~~------~e~KYVInIkq 115 (118)
.||..+|+++|.++++..+++++|.. ++|+...| ++|++||+|+++|+.++ +.++|+|++..
T Consensus 21 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~~~~iv~~~~~~~~~v~~~~ 100 (405)
T 4b4t_J 21 PYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAK 100 (405)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECTTSCEEEEESSSCEEEECCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEecCCeEEEEeCCCCEEEEeccc
Confidence 37899999999999999999988872 45566666 89999999999998654 67788888764
No 3
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=97.53 E-value=0.00016 Score=50.86 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccccc-CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077 59 SIKKMEKEIKNMAKKVNDLCGIELCYKCV-HFTHLVARCTNIINLNS------EDAKYVINVKQ 115 (118)
Q Consensus 59 ~Ik~lE~dIk~~~~~In~L~GiKEsdTGL-E~pLqVArCtKII~~~~------~e~KYVInIkq 115 (118)
..|+++.+++++.++++++ +|+..-| ++|++||+|+++|+.++ ..++|+|+|.+
T Consensus 8 ~~~~l~~~~~~l~~~i~~l---keel~~L~~~P~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~ 68 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHL---ENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQ 68 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHH---HHHHHHHHSCCEEEEEEEEECTTSCEEEEETTSCEEEECBCT
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCceEEEEEEEecCCEEEEEeCCCCEEEEEccc
Confidence 3466666666666666544 4555555 89999999999998654 35566666653
No 4
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=95.72 E-value=0.0042 Score=42.07 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=24.3
Q ss_pred CCCceeeEEEeecCCCC------CCcceEEeeccc
Q 037077 88 HFTHLVARCTNIINLNS------EDAKYVINVKQI 116 (118)
Q Consensus 88 E~pLqVArCtKII~~~~------~e~KYVInIkqi 116 (118)
++|+.||.+.++|+.+. ..++|+|+|.+.
T Consensus 16 ~~P~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~ 50 (85)
T 3h43_A 16 VPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHF 50 (85)
T ss_dssp SCCEEEEEEEEEEETTEEEEEETTSSEEEEEBCTT
T ss_pred CCCceEEEEEEEcCCCEEEEEeCCCCeEEEEecCc
Confidence 69999999999998664 578899988753
No 5
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=94.12 E-value=0.038 Score=44.59 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh-----------Ccccccccc-CCCceeeEEEeecCCCC-----CCcceEEeecc
Q 037077 57 STSIKKMEKEIKNMAKKVNDLC-----------GIELCYKCV-HFTHLVARCTNIINLNS-----EDAKYVINVKQ 115 (118)
Q Consensus 57 s~~Ik~lE~dIk~~~~~In~L~-----------GiKEsdTGL-E~pLqVArCtKII~~~~-----~e~KYVInIkq 115 (118)
...+++++.++..++.+..+|. .+|++..-| +|||.||.++++++.+. ...+|+|+|.+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~dd~~aiV~s~Gr~~~V~Vsp 128 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATHDDDTVDVFTSGRKMRLTCSP 128 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECSSSCEEEECSSSCCEECBCT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEEeCCceEEEEeCC
Confidence 4467777777766655555433 356666666 99999999999997654 56789998876
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.87 E-value=0.19 Score=42.15 Aligned_cols=55 Identities=15% Similarity=0.360 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHh----Ccccccccc-CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077 61 KKMEKEIKNMAKKVNDLC----GIELCYKCV-HFTHLVARCTNIINLNS------EDAKYVINVKQ 115 (118)
Q Consensus 61 k~lE~dIk~~~~~In~L~----GiKEsdTGL-E~pLqVArCtKII~~~~------~e~KYVInIkq 115 (118)
+++|..++.+..+++.|. ..+|+...| ..|+.||.+.++|+.+. ..++|+|++.+
T Consensus 68 ~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~ 133 (437)
T 4b4t_L 68 RRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRN 133 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEECSSSSCEEEEETTSCEEEECBCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeheeeecCCcEEEEECCCCEEEEeccc
Confidence 455666666666655544 356666777 79999999999998654 57788888754
No 7
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.63 E-value=12 Score=31.74 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=21.5
Q ss_pred CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077 88 HFTHLVARCTNIINLNS------EDAKYVINVKQ 115 (118)
Q Consensus 88 E~pLqVArCtKII~~~~------~e~KYVInIkq 115 (118)
.+|+-||.+.++|+.+. ..++|+|++..
T Consensus 101 ~~p~~~g~~~~~~~~~~~iv~~~~~~~~~v~~~~ 134 (437)
T 4b4t_I 101 GNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILS 134 (437)
T ss_dssp CSSEEEEEEEEECTTSEEEEECSSSCCCEEECCT
T ss_pred CCCceeEEEEEEecCCEEEEEcCCCCEEEEeccc
Confidence 57999999999998543 45677777653
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.96 E-value=7.9 Score=32.23 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=26.8
Q ss_pred cccccccc-CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077 80 IELCYKCV-HFTHLVARCTNIINLNS------EDAKYVINVKQ 115 (118)
Q Consensus 80 iKEsdTGL-E~pLqVArCtKII~~~~------~e~KYVInIkq 115 (118)
++|+...| .+|+.||.+.++++.+. ..++|+|++..
T Consensus 82 ~~ee~~~l~~~~~~vg~~~e~~d~~~~iv~~~~~~~~~v~~~~ 124 (428)
T 4b4t_K 82 AQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILS 124 (428)
T ss_dssp HHHHHHHHTCSCEEEEEEEEEEETTEEEEEETTSCEEEECBCS
T ss_pred HHHHHHHHcCCCceeeEEEEEccCCeeEEecCCCCEEEEeccc
Confidence 56666566 78999999999997653 46678887653
No 9
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=52.40 E-value=15 Score=22.25 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 037077 48 NPSFSLGPYSTSIKKMEKEIKNMAKKVNDL 77 (118)
Q Consensus 48 ~~~yg~gpYs~~Ik~lE~dIk~~~~~In~L 77 (118)
+|.+..++=...|..||..|..+...|..|
T Consensus 39 ~~~~~r~~~~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 39 KRDFRRTYKRARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp CTTCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCccCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666678999999999999888765
No 10
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=49.34 E-value=33 Score=27.20 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-----------Ccccccc----cc-----------------CCCceeeEEEee---cCC
Q 037077 58 TSIKKMEKEIKNMAKKVNDLC-----------GIELCYK----CV-----------------HFTHLVARCTNI---INL 102 (118)
Q Consensus 58 ~~Ik~lE~dIk~~~~~In~L~-----------GiKEsdT----GL-----------------E~pLqVArCtKI---I~~ 102 (118)
+..+..|+.|+.+++++.+|. ||-|... |+ |-.+||-|+-+. +++
T Consensus 27 q~eq~~ekrik~ne~sL~dL~d~iRr~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~ 106 (233)
T 2yko_A 27 REGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSS 106 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCC
Confidence 455666677777777777666 7766544 54 566889988877 455
Q ss_pred CCCCcceEE
Q 037077 103 NSEDAKYVI 111 (118)
Q Consensus 103 ~~~e~KYVI 111 (118)
..+-++.+|
T Consensus 107 kr~tPR~II 115 (233)
T 2yko_A 107 RRATPRHII 115 (233)
T ss_dssp -CCSCCCEE
T ss_pred CCCCCCeEE
Confidence 556677655
No 11
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=41.55 E-value=30 Score=21.08 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 037077 57 STSIKKMEKEIKNMAKKVNDLC 78 (118)
Q Consensus 57 s~~Ik~lE~dIk~~~~~In~L~ 78 (118)
...|.++|..|.++++++..|+
T Consensus 15 drEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 15 DREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888887775
No 12
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=37.20 E-value=17 Score=29.13 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=19.6
Q ss_pred hhhccCCCCCC-CchhhhHHHHHHH
Q 037077 42 RKLSFLNPSFS-LGPYSTSIKKMEK 65 (118)
Q Consensus 42 ~~~~~~~~~yg-~gpYs~~Ik~lE~ 65 (118)
|-|-|+||+|+ .+-|...++.+..
T Consensus 160 fdLVfiDPPYe~k~~~~~vl~~L~~ 184 (283)
T 2oo3_A 160 RGLIFIDPSYERKEEYKEIPYAIKN 184 (283)
T ss_dssp CEEEEECCCCCSTTHHHHHHHHHHH
T ss_pred ccEEEECCCCCCCcHHHHHHHHHHH
Confidence 56899999999 5788888777765
No 13
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=34.25 E-value=37 Score=20.20 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhC
Q 037077 58 TSIKKMEKEIKNMAKKVNDLCG 79 (118)
Q Consensus 58 ~~Ik~lE~dIk~~~~~In~L~G 79 (118)
..|..+|..|..+...|..|..
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3488899999999988888764
No 14
>2jo7_A Glycosylphosphatidylinositol-anchored merozoite surface protein; surface antigen, GPI-anchored protein, recombinant vaccine; NMR {Babesia divergens}
Probab=34.01 E-value=61 Score=25.67 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=35.2
Q ss_pred cCCCCCCChhhHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHH
Q 037077 23 EKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMA 71 (118)
Q Consensus 23 ~~~~~~lde~dI~lLk~~~~~~~~~~~~yg~gpYs~~Ik~lE~dIk~~~ 71 (118)
+-++.+|+-+||.-.-+ -|-||..--+.+-|++|..|.++.
T Consensus 150 ~~~ptflt~edis~~Lt--------vPeYG~pmna~kwk~vE~kI~dkl 190 (224)
T 2jo7_A 150 ALTPTFLTSEDISGYLT--------VPEYGAPMNAAKWKKVEGMIHGKL 190 (224)
T ss_dssp HSSSCCSCHHHHHHHHH--------CCSTTCCTTTCHHHHHHHHHHHHH
T ss_pred hcCCCcccHHHHHhHhc--------CcccCCCccHHHHHHHHHHHHhhh
Confidence 34677899999987776 499999999999999999998863
No 15
>1iq5_B Ca2+/calmodulin dependent kinase kinase; EF-hand, protein-peptide complex, metal binding protein/protein binding complex; 1.80A {Xenopus laevis}
Probab=33.88 E-value=28 Score=19.34 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHhhhccCCCC
Q 037077 31 EDDIALLKTCIRKLSFLNPS 50 (118)
Q Consensus 31 e~dI~lLk~~~~~~~~~~~~ 50 (118)
-+-+-+.|+..|+-||-||-
T Consensus 7 l~Tvilvk~Ml~~~sf~nPf 26 (27)
T 1iq5_B 7 LDTLILVKAMGHRKRFGNPF 26 (27)
T ss_dssp HHHHHHHHHHHHHTSSSCSC
T ss_pred hhHHHHHHHHHhcccccCCC
Confidence 45577889889999999993
No 16
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=32.95 E-value=17 Score=24.44 Aligned_cols=34 Identities=9% Similarity=-0.027 Sum_probs=25.1
Q ss_pred HhCcccccccc-CCCceeeEEEeecCCCCCCcceE
Q 037077 77 LCGIELCYKCV-HFTHLVARCTNIINLNSEDAKYV 110 (118)
Q Consensus 77 L~GiKEsdTGL-E~pLqVArCtKII~~~~~e~KYV 110 (118)
|-.|..+|--. .-++..|.++||+.++..-|+|+
T Consensus 34 LPrI~~~DPvar~~G~k~GdVvkI~R~S~taG~~v 68 (78)
T 1hmj_A 34 LPKIYEDDPVIQEIGAKEGDVVRVIRKSPTAGVSI 68 (78)
T ss_pred CCeeeCcCHhhHHhCCCCCCEEEEEECCCCCCCcE
Confidence 55677777666 56888999999998766666654
No 17
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=32.71 E-value=28 Score=23.48 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=23.6
Q ss_pred CCCCCCchhhh--------HHHHHHHHHHHHHHHHHHHh--------C-ccccccccCCCceee
Q 037077 48 NPSFSLGPYST--------SIKKMEKEIKNMAKKVNDLC--------G-IELCYKCVHFTHLVA 94 (118)
Q Consensus 48 ~~~yg~gpYs~--------~Ik~lE~dIk~~~~~In~L~--------G-iKEsdTGLE~pLqVA 94 (118)
||+=+.+.|+. -+-+.|.++.....+|++|+ + +.++-+.|+.|.+.+
T Consensus 3 np~d~~a~y~~ltreELi~l~lk~~~~l~~k~~~v~eLEdYID~LLvRVME~~P~iLq~p~~~~ 66 (75)
T 3tso_C 3 NPFDATAGYRSLTYEEVLQELVKHKELLRRKDTHIRELEDYIDNLLVRVMEETPSILRVPYEPS 66 (75)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBSSCCC-
T ss_pred CcchhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCccc
Confidence 55555555543 24456777777777777776 4 555666667666544
No 18
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=30.24 E-value=74 Score=22.65 Aligned_cols=33 Identities=15% Similarity=0.353 Sum_probs=28.8
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHhC
Q 037077 47 LNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLCG 79 (118)
Q Consensus 47 ~~~~yg~gpYs~~Ik~lE~dIk~~~~~In~L~G 79 (118)
++--+|..-|....+.+...++++.+++.++.+
T Consensus 157 l~~i~g~~~~~~~~~~l~~~~~~~~~~~~~l~~ 189 (203)
T 3qks_A 157 VREVLNLDKFETAYKKLSELKKTINNRIKEYRD 189 (203)
T ss_dssp HHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334489999999999999999999999999887
No 19
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.38 E-value=53 Score=20.70 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Q 037077 56 YSTSIKKMEKEIKNMAKKVNDLC 78 (118)
Q Consensus 56 Ys~~Ik~lE~dIk~~~~~In~L~ 78 (118)
|+.+|+++|..|.+....-.++.
T Consensus 2 ~s~ki~~~e~kI~~~~~~~~~~l 24 (73)
T 3htk_B 2 VSQKIKDIDDQIQQLLLKQRHLL 24 (73)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998877655543
No 20
>3o6q_B Stage II sporulation protein SB; GAF domain, toxin-antitoxin, toxin - antitoxin toxin-antitoxin complex; HET: MSE; 2.50A {Bacillus subtilis}
Probab=25.08 E-value=52 Score=21.06 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=12.5
Q ss_pred CCCCCCchhhhHHHH
Q 037077 48 NPSFSLGPYSTSIKK 62 (118)
Q Consensus 48 ~~~yg~gpYs~~Ik~ 62 (118)
=|||+.+||+..|=+
T Consensus 28 ~~~y~vSPhT~rIfK 42 (56)
T 3o6q_B 28 VASYQVSPHTARIFK 42 (56)
T ss_dssp ECCCCCCHHHHHHHH
T ss_pred ccccccChhHHHHHH
Confidence 389999999998743
No 21
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=24.60 E-value=69 Score=21.83 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 037077 57 STSIKKMEKEIKNMAKKVNDLC 78 (118)
Q Consensus 57 s~~Ik~lE~dIk~~~~~In~L~ 78 (118)
...|+.+|..|....++|+.|.
T Consensus 57 ~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 57 AKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4466677777777777776653
No 22
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=24.52 E-value=35 Score=24.74 Aligned_cols=28 Identities=4% Similarity=0.253 Sum_probs=20.1
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 037077 48 NPSFSLGPYSTSIKKMEKEIKNMAKKVND 76 (118)
Q Consensus 48 ~~~yg~gpYs~~Ik~lE~dIk~~~~~In~ 76 (118)
||.||. -|..-...+|.-+..+.++|++
T Consensus 142 DPyy~~-~Fe~v~~~I~~~~~~ll~~l~~ 169 (173)
T 4etm_A 142 DPYYTG-NFEEVCQLIKTGCEQLLASIQK 169 (173)
T ss_dssp CHHHHC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 565654 4777788888888888777764
No 23
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} SCOP: c.44.1.1
Probab=23.99 E-value=57 Score=22.51 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=24.0
Q ss_pred ccCCCCCCCchhhhHHHHHHHHHHHHHHHHH
Q 037077 45 SFLNPSFSLGPYSTSIKKMEKEIKNMAKKVN 75 (118)
Q Consensus 45 ~~~~~~yg~gpYs~~Ik~lE~dIk~~~~~In 75 (118)
.+-||.||...|.....+++..+..+.++|+
T Consensus 114 ~i~DP~~~~~~f~~~~~~I~~~v~~ll~~l~ 144 (146)
T 1p8a_A 114 GVDDPYYSSDGFPTMFASISKEMKPFLTEHG 144 (146)
T ss_dssp SSCCCSSSSSSHHHHHHHHHHTTHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5779988644788888888888888877663
No 24
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}
Probab=22.72 E-value=48 Score=23.76 Aligned_cols=32 Identities=6% Similarity=0.113 Sum_probs=25.8
Q ss_pred ccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 037077 45 SFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDL 77 (118)
Q Consensus 45 ~~~~~~yg~gpYs~~Ik~lE~dIk~~~~~In~L 77 (118)
..-||.||. .|......+|.-++.+.++|.+-
T Consensus 122 ~VpDPyy~~-~F~~v~~~Ie~~~~~ll~~l~~~ 153 (158)
T 3rof_A 122 DVPDPYYTN-NFEGVYDMVLSSCDNLIDYIVKD 153 (158)
T ss_dssp SCCCHHHHC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCc-hHHHHHHHHHHHHHHHHHHHHhh
Confidence 356787765 59999999999999999888754
No 25
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=21.89 E-value=79 Score=21.88 Aligned_cols=43 Identities=9% Similarity=0.240 Sum_probs=33.1
Q ss_pred hhHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHH
Q 037077 32 DDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKV 74 (118)
Q Consensus 32 ~dI~lLk~~~~~~~~~~~~yg~gpYs~~Ik~lE~dIk~~~~~I 74 (118)
..|+-|...+.--|+.=|+|-.--|+..|+.|...+.+...++
T Consensus 65 ~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e~r~~l 107 (111)
T 2l3l_A 65 SRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGL 107 (111)
T ss_dssp HHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677777766667777788988888888888888888776654
No 26
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.78 E-value=80 Score=19.29 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=17.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHh
Q 037077 53 LGPYSTSIKKMEKEIKNMAKKVNDLC 78 (118)
Q Consensus 53 ~gpYs~~Ik~lE~dIk~~~~~In~L~ 78 (118)
.||=...+..+-.+..++..+++.|.
T Consensus 14 ~~p~~~d~eaLk~E~~eLk~k~~~L~ 39 (53)
T 2yy0_A 14 ATPENPEIELLRLELAEMKEKYEAIV 39 (53)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 36667777777777777777777665
No 27
>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0
Probab=21.48 E-value=32 Score=25.70 Aligned_cols=51 Identities=20% Similarity=0.367 Sum_probs=33.8
Q ss_pred CChhhHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHhC-cccccccc
Q 037077 29 PDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLCG-IELCYKCV 87 (118)
Q Consensus 29 lde~dI~lLk~~~~~~~~~~~~yg~gpYs~~Ik~lE~dIk~~~~~In~L~G-iKEsdTGL 87 (118)
++++++..|+...|.| |-..+..+.+++++.+. ....+..++- +++|..|+
T Consensus 206 ~~~~~~~~l~~~~~~l------~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~r~~ 257 (266)
T 3r0s_A 206 FDKDEVDRLSRAFKTL------FRQGDLKENAKNLLENQ--ESENVKKMCHFILETKRGI 257 (266)
T ss_dssp SCHHHHHHHHHHHHHH------HSSSCHHHHHHHHHTTC--CCHHHHHHHHHHHHCSSCC
T ss_pred CCHHHHHHHHHHHHHH------HccCcHHHHHHHHHhhc--CCHHHHHHHHHHHhccCCc
Confidence 8899999999866655 22256777777777654 2234556665 66777666
No 28
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.66 E-value=58 Score=22.60 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 037077 59 SIKKMEKEIKNMAKKVNDLCG 79 (118)
Q Consensus 59 ~Ik~lE~dIk~~~~~In~L~G 79 (118)
.-.++|.+|+++.++|..|+.
T Consensus 48 t~~eL~~EI~~L~~eI~~LE~ 68 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEIDQLEK 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888875
Done!