BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037079
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 14/137 (10%)
Query: 69 YKHVWKIENFSKLEAKRHE---SEVFI--VRDQ-KWKIQLHPKGIKSGTGSHVSMSLALV 122
+ ++W I NFS + E S F D+ KW ++++PKG+ + ++S+ L
Sbjct: 7 FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYL--- 63
Query: 123 DSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFR----SSWGWPRFAELSYLNEAGN 178
P ++ F I + + K + +R WG+ +F +L + N
Sbjct: 64 -LLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEAN 122
Query: 179 GFLVNDGCIVEAEVSVL 195
G L +D + EVSV+
Sbjct: 123 GLLPDDKLTLFCEVSVV 139
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 14 EWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV 47
+WGF +FI D +NG L DD EV V
Sbjct: 105 DWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSV 138
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 14/137 (10%)
Query: 69 YKHVWKIENFSKLEAKRHE---SEVFI--VRDQ-KWKIQLHPKGIKSGTGSHVSMSLALV 122
+ ++W I NFS + E S F D+ KW ++++PKG+ + ++S+ L
Sbjct: 11 FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLL-- 68
Query: 123 DSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFR----SSWGWPRFAELSYLNEAGN 178
P ++ F I + + K + +R WG+ +F +L + N
Sbjct: 69 --LVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 126
Query: 179 GFLVNDGCIVEAEVSVL 195
G L +D + EVSV+
Sbjct: 127 GLLPDDKLTLFCEVSVV 143
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 14 EWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV 47
+WGF +FI + D +NG L DD EV V
Sbjct: 109 DWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 142
>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep1
pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
Length = 145
Score = 33.5 bits (75), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 14/137 (10%)
Query: 69 YKHVWKIENFSKLEAKRHE---SEVFI--VRDQ-KWKIQLHPKGIKSGTGSHVSMSLALV 122
+ ++W I NFS + E S F D+ KW ++++PKG+ + ++S+ L
Sbjct: 11 FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLL-- 68
Query: 123 DSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFR----SSWGWPRFAELSYLNEAGN 178
P ++ F I + + K + +R WG+ +F +L + N
Sbjct: 69 --LVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEAN 126
Query: 179 GFLVNDGCIVEAEVSVL 195
G L +D + EVSV+
Sbjct: 127 GLLPDDKLTLFCEVSVV 143
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 14 EWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV 47
+WGF +FI D +NG L DD EV V
Sbjct: 109 DWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSV 142
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 33.1 bits (74), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 14/137 (10%)
Query: 69 YKHVWKIENFSKLEAKRHE---SEVFI--VRDQ-KWKIQLHPKGIKSGTGSHVSMSLALV 122
+ ++W I NFS + E S F D+ KW ++++PKG+ + ++S+ L
Sbjct: 12 FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLL-- 69
Query: 123 DSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSIWFR----SSWGWPRFAELSYLNEAGN 178
P ++ F I + + K + +R WG+ +F +L + N
Sbjct: 70 --LVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 127
Query: 179 GFLVNDGCIVEAEVSVL 195
G L +D + EVSV+
Sbjct: 128 GLLPDDKLTLFCEVSVV 144
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 14 EWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV 47
+WGF +FI + D +NG L DD EV V
Sbjct: 110 DWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 143
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 14 EWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVK 48
+WGF F+ E D G++ DD F EV V+
Sbjct: 116 DWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQ 148
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 14 EWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVK 48
+WGF F+ E D G++ DD F EV V+
Sbjct: 102 DWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQ 134
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 14 EWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVK 48
+WGF F+ E D G++ DD F EV V+
Sbjct: 114 DWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQ 146
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 14 EWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVK 48
+WGF F+ E D G++ DD F EV V+
Sbjct: 116 DWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQ 148
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 14 EWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVK 48
+WGF F+ E D G++ DD F EV V+
Sbjct: 116 DWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQ 148
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 14 EWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLVK 48
+WGF F+ E D G++ DD F EV V+
Sbjct: 126 DWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQ 158
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 67 SIYKHVWKIEN---------FSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSM 117
++Y ++ EN SK E ++ EV + D + P+ + G V++
Sbjct: 92 ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVAL 151
Query: 118 SLALVDSSTITPGFKIYVHFTLRIRDQVRGKHKEANTSI 156
+ ALV ++ + + + R+RD R KE + +
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL 190
>pdb|3RGF|B Chain B, Crystal Structure Of Human Cdk8CYCC
Length = 285
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 81 LEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFK-IYVHFTL 139
L +R + F+ ++ WK+Q+ + G H+ + ++ ++T+ FK Y ++L
Sbjct: 23 LLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVY--FKRFYARYSL 80
Query: 140 RIRDQV 145
+ D V
Sbjct: 81 KSIDPV 86
>pdb|1EI3|B Chain B, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|E Chain E, Crystal Structure Of Native Chicken Fibrinogen
pdb|1M1J|B Chain B, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|E Chain E, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 464
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 64 TSASIYKHVWKIEN-FSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSL--- 119
TS ++Y++V I+N K + +R ++++ I+ + +++LH IK +++ SL
Sbjct: 115 TSTTMYQYVNMIDNKLVKTQKQRKDNDI-ILSEYNTEMELHYNYIKDNLDNNIPSSLRVL 173
Query: 120 -ALVDS 124
A++DS
Sbjct: 174 RAVIDS 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,146,552
Number of Sequences: 62578
Number of extensions: 236842
Number of successful extensions: 509
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 27
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)