Query 037079
Match_columns 201
No_of_seqs 272 out of 1156
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03772 MATH_HAUSP Herpesvirus 100.0 3.8E-30 8.2E-35 192.0 17.0 127 68-196 2-134 (137)
2 cd03775 MATH_Ubp21p Ubiquitin- 100.0 3E-29 6.5E-34 186.5 14.8 121 70-193 2-134 (134)
3 cd03774 MATH_SPOP Speckle-type 100.0 1.6E-28 3.5E-33 183.6 14.5 127 66-196 2-138 (139)
4 cd03773 MATH_TRIM37 Tripartite 100.0 7.6E-28 1.7E-32 178.2 13.2 122 66-193 2-130 (132)
5 cd00270 MATH_TRAF_C Tumor Necr 99.9 1.2E-26 2.6E-31 175.3 12.7 123 69-193 1-149 (149)
6 cd03780 MATH_TRAF5 Tumor Necro 99.9 1.9E-25 4.2E-30 168.2 13.5 124 69-192 1-147 (148)
7 cd03776 MATH_TRAF6 Tumor Necro 99.9 1.1E-25 2.3E-30 170.0 11.9 123 69-193 1-147 (147)
8 cd03778 MATH_TRAF2 Tumor Necro 99.9 3.3E-25 7.1E-30 168.4 13.7 126 66-192 16-163 (164)
9 cd03781 MATH_TRAF4 Tumor Necro 99.9 4.8E-25 1E-29 167.6 13.5 123 69-193 1-154 (154)
10 cd03779 MATH_TRAF1 Tumor Necro 99.9 6E-25 1.3E-29 165.0 13.5 124 69-192 1-146 (147)
11 cd00121 MATH MATH (meprin and 99.9 1.7E-24 3.7E-29 157.0 15.5 122 69-193 1-126 (126)
12 cd03777 MATH_TRAF3 Tumor Necro 99.9 1.3E-24 2.7E-29 169.4 14.7 126 66-193 36-184 (186)
13 cd03771 MATH_Meprin Meprin fam 99.9 7.5E-25 1.6E-29 167.4 12.8 123 68-193 1-167 (167)
14 PF00917 MATH: MATH domain; I 99.9 8.2E-24 1.8E-28 152.9 10.4 114 75-194 1-119 (119)
15 smart00061 MATH meprin and TRA 99.8 3.4E-19 7.3E-24 123.5 11.6 91 71-168 2-95 (95)
16 cd03783 MATH_Meprin_Alpha Mepr 99.8 2E-19 4.4E-24 136.4 10.4 123 68-192 1-166 (167)
17 cd03782 MATH_Meprin_Beta Mepri 99.8 2.4E-18 5.2E-23 130.0 11.1 122 68-192 1-166 (167)
18 COG5077 Ubiquitin carboxyl-ter 99.6 5.2E-16 1.1E-20 138.6 6.8 128 66-197 36-173 (1089)
19 KOG1987 Speckle-type POZ prote 98.9 3.7E-08 8.1E-13 82.1 12.4 115 71-196 6-127 (297)
20 cd03772 MATH_HAUSP Herpesvirus 98.7 1.4E-08 2.9E-13 75.5 4.3 43 5-47 90-132 (137)
21 cd03775 MATH_Ubp21p Ubiquitin- 98.5 7.2E-08 1.6E-12 71.4 4.0 43 3-45 87-133 (134)
22 KOG1863 Ubiquitin carboxyl-ter 98.4 2.5E-07 5.5E-12 89.3 4.5 126 69-199 27-156 (1093)
23 cd03774 MATH_SPOP Speckle-type 98.2 8E-07 1.7E-11 66.1 2.6 43 4-47 94-136 (139)
24 PF00917 MATH: MATH domain; I 97.9 6.1E-06 1.3E-10 58.9 2.5 40 5-47 80-119 (119)
25 KOG1987 Speckle-type POZ prote 97.8 9.5E-07 2.1E-11 73.7 -4.6 190 4-196 82-295 (297)
26 cd03773 MATH_TRIM37 Tripartite 97.5 6.1E-05 1.3E-09 55.3 1.8 39 5-46 90-130 (132)
27 KOG0297 TNF receptor-associate 97.2 0.00022 4.8E-09 62.0 3.1 79 66-144 277-365 (391)
28 cd00121 MATH MATH (meprin and 97.2 0.00029 6.4E-09 50.1 2.7 38 6-45 87-125 (126)
29 COG5077 Ubiquitin carboxyl-ter 95.2 0.015 3.1E-07 53.9 2.6 45 2-46 122-169 (1089)
30 KOG1863 Ubiquitin carboxyl-ter 95.0 0.015 3.2E-07 57.0 2.4 48 4-51 108-156 (1093)
31 PF08922 DUF1905: Domain of un 33.3 74 0.0016 21.0 3.5 16 92-107 38-53 (80)
No 1
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.97 E-value=3.8e-30 Score=192.01 Aligned_cols=127 Identities=22% Similarity=0.322 Sum_probs=108.5
Q ss_pred ccEEEEEEcccccccCceEeeCeEEEcCeEEEEEEEeCCCCC--CCCCEEEEEEEEccCCCCCCCceEEEEEEEEEEcCC
Q 037079 68 IYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKS--GTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQV 145 (201)
Q Consensus 68 ~~~~~w~I~nfS~l~~~~~~S~~f~~gg~~W~l~vyP~G~~~--~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l~n~~ 145 (201)
.++|+|+|+|||.+ ++.+.|++|.+||++|+|.+||+|... +..++|||||.|.+.. ....|++.|+|+|+|+||.
T Consensus 2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~ 79 (137)
T cd03772 2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYK 79 (137)
T ss_pred CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCC
Confidence 47899999999999 678999999999999999999999654 2348999999997643 3348999999999999998
Q ss_pred CC-eeEEeeeceeec---cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEe
Q 037079 146 RG-KHKEANTSIWFR---SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLG 196 (201)
Q Consensus 146 ~~-~~~~~~~~~~F~---~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~ 196 (201)
++ .+..+...+.|. ..|||++||+|++|+++++|||+||+|+|||+|+|-.
T Consensus 80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 53 334445567886 6899999999999987779999999999999998754
No 2
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.97 E-value=3e-29 Score=186.52 Aligned_cols=121 Identities=26% Similarity=0.438 Sum_probs=104.2
Q ss_pred EEEEEEcccccccCceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCC----CCCCceEEEEEEEEEEcCC
Q 037079 70 KHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSST----ITPGFKIYVHFTLRIRDQV 145 (201)
Q Consensus 70 ~~~w~I~nfS~l~~~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~----~~~~w~~~~~f~l~l~n~~ 145 (201)
+|+|+|+|||.+ ++.+.|++|.+|||+|+|.+||+|+.. .+|+||||.+.+.+. .+++|++.|+|+|+|+||.
T Consensus 2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~ 78 (134)
T cd03775 2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG 78 (134)
T ss_pred cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence 599999999997 578999999999999999999999876 589999999976543 2568999999999999997
Q ss_pred CCe-eEEeeeceeec---cCCCccceeechhhhcC----CCCeEeCCEEEEEEEEE
Q 037079 146 RGK-HKEANTSIWFR---SSWGWPRFAELSYLNEA----GNGFLVNDGCIVEAEVS 193 (201)
Q Consensus 146 ~~~-~~~~~~~~~F~---~~~G~~~Fi~~~~L~~~----~~gfl~dD~l~ie~~V~ 193 (201)
++. +......++|+ .+|||.+||++++|++| ++|||+||+|+|+|.|+
T Consensus 79 ~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 79 DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred CCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 654 34445568887 78999999999999965 57999999999999884
No 3
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.96 E-value=1.6e-28 Score=183.59 Aligned_cols=127 Identities=25% Similarity=0.465 Sum_probs=107.3
Q ss_pred cCccEEEEEEccccccc---CceEeeCeEEEcCe---EEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEE
Q 037079 66 ASIYKHVWKIENFSKLE---AKRHESEVFIVRDQ---KWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTL 139 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~---~~~~~S~~f~~gg~---~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l 139 (201)
+...+|+|+|+|||.++ ++.+.|++|.+||+ +|+|++||+|...+..+|+||||++.+.. .+++.|+|+|
T Consensus 2 ~~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~----~~~v~a~f~~ 77 (139)
T cd03774 2 VVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKF 77 (139)
T ss_pred ceEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC----CCcEEEEEEE
Confidence 34578999999999874 67999999999984 99999999998766678999999997532 4679999999
Q ss_pred EEEcCCCCeeEE--eeeceeec--cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEe
Q 037079 140 RIRDQVRGKHKE--ANTSIWFR--SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLG 196 (201)
Q Consensus 140 ~l~n~~~~~~~~--~~~~~~F~--~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~ 196 (201)
+|+||.+..... ....+.|. .+|||.+||++++|+++.+|||+||+|+|+|+|+|++
T Consensus 78 ~l~n~~~~~~~~~~~~~~~~f~~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 78 SILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EEEecCCCeeeeecccCcEeCCCCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 999999765321 22346666 7899999999999987778999999999999999986
No 4
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.95 E-value=7.6e-28 Score=178.25 Aligned_cols=122 Identities=25% Similarity=0.397 Sum_probs=104.3
Q ss_pred cCccEEEEEEccccccc--CceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEEEEEc
Q 037079 66 ASIYKHVWKIENFSKLE--AKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRD 143 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~--~~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l~n 143 (201)
+...+++|+|+|||.++ ++.+.|++|.+||++|+|++||+|...+.++|||+||++.++. .|.+.++|+|+|+|
T Consensus 2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~~----~~~~~~~~~l~lln 77 (132)
T cd03773 2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGL----GEASKYEYRVEMVH 77 (132)
T ss_pred CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecCC----CCceeEEEEEEEEc
Confidence 45678999999999985 5789999999999999999999998876678999999987642 36788999999999
Q ss_pred CC-CCeeEEeeeceeec--cCCCccceeechhhhcCCCCeEeC--CEEEEEEEEE
Q 037079 144 QV-RGKHKEANTSIWFR--SSWGWPRFAELSYLNEAGNGFLVN--DGCIVEAEVS 193 (201)
Q Consensus 144 ~~-~~~~~~~~~~~~F~--~~~G~~~Fi~~~~L~~~~~gfl~d--D~l~ie~~V~ 193 (201)
|. +..+......+.|. .+|||.+||++++|++ +|||+| |+|+|+|.|+
T Consensus 78 q~~~~~~~~~~~~~~f~~~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 78 QANPTKNIKREFASDFEVGECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCCCccceEEeccccccCCCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence 95 33344455567787 7799999999999986 799999 9999999986
No 5
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.94 E-value=1.2e-26 Score=175.30 Aligned_cols=123 Identities=24% Similarity=0.374 Sum_probs=101.1
Q ss_pred cEEEEEEccccccc-------CceEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceEEEEEE
Q 037079 69 YKHVWKIENFSKLE-------AKRHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKIYVHFT 138 (201)
Q Consensus 69 ~~~~w~I~nfS~l~-------~~~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~~~~f~ 138 (201)
++|+|+|+|||.++ ++.++|++|.+| ||+|+|++||+|...+.++||||||++.+++.. ...|++.++|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 57999999999974 358999999999 999999999999876667899999999876432 45799999999
Q ss_pred EEEEcCCCC---eeEEeee-----ceee-------c-cCCCccceeechhhhcCCCCeEeCCEEEEEEEEE
Q 037079 139 LRIRDQVRG---KHKEANT-----SIWF-------R-SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVS 193 (201)
Q Consensus 139 l~l~n~~~~---~~~~~~~-----~~~F-------~-~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~ 193 (201)
|+|+||.++ ++..... .+.| . .+|||.+||++++|++ .|||+||+|+|+|+|.
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence 999999874 2322111 1223 2 6799999999999986 5999999999999983
No 6
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.93 E-value=1.9e-25 Score=168.24 Aligned_cols=124 Identities=23% Similarity=0.308 Sum_probs=101.8
Q ss_pred cEEEEEEccccccc-----Cc--eEeeCeE--EEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceEEEEEE
Q 037079 69 YKHVWKIENFSKLE-----AK--RHESEVF--IVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKIYVHFT 138 (201)
Q Consensus 69 ~~~~w~I~nfS~l~-----~~--~~~S~~f--~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~~~~f~ 138 (201)
|.|.|+|.+||.++ ++ .+.|++| .++||+|+|++||+|.+.+.++|+||||++++++-. ...|++.++++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 57999999999985 44 7999999 899999999999999998788999999999875321 24699999999
Q ss_pred EEEEcCCCCe-eE--Eee---eceeec-------cCCCccceeechhhhcCCCCeEeCCEEEEEEEE
Q 037079 139 LRIRDQVRGK-HK--EAN---TSIWFR-------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEV 192 (201)
Q Consensus 139 l~l~n~~~~~-~~--~~~---~~~~F~-------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V 192 (201)
|+|++|.+.. ++ +.. ..+.|. ..||+++||++++|+.++.+||.||+++|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 9999998543 21 111 124564 369999999999998644599999999999987
No 7
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.93 E-value=1.1e-25 Score=169.95 Aligned_cols=123 Identities=24% Similarity=0.320 Sum_probs=99.4
Q ss_pred cEEEEEEccccccc-----Cc--eEeeCeEEE--cCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCC-CCCCceEEEEEE
Q 037079 69 YKHVWKIENFSKLE-----AK--RHESEVFIV--RDQKWKIQLHPKGIKSGTGSHVSMSLALVDSST-ITPGFKIYVHFT 138 (201)
Q Consensus 69 ~~~~w~I~nfS~l~-----~~--~~~S~~f~~--gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~-~~~~w~~~~~f~ 138 (201)
++|+|+|.|||.++ ++ .+.|++|.+ |||+|+|++||+|...+..+|||+||++++++. ....|++.++++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 57999999999754 33 488999985 799999999999998777789999999987543 234699999999
Q ss_pred EEEEcCCCCe-eEEe-----eeceeec--------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEE
Q 037079 139 LRIRDQVRGK-HKEA-----NTSIWFR--------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVS 193 (201)
Q Consensus 139 l~l~n~~~~~-~~~~-----~~~~~F~--------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~ 193 (201)
|+|+||.++. +... .....|. .+|||.+||++++|+. .+||+||+|+|+|+|.
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence 9999998632 2211 1123342 4799999999999986 6899999999999984
No 8
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.93 E-value=3.3e-25 Score=168.40 Aligned_cols=126 Identities=20% Similarity=0.250 Sum_probs=106.5
Q ss_pred cCccEEEEEEccccccc-----C--ceEeeCeEEE--cCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCC-CCceEEE
Q 037079 66 ASIYKHVWKIENFSKLE-----A--KRHESEVFIV--RDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTIT-PGFKIYV 135 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~-----~--~~~~S~~f~~--gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~-~~w~~~~ 135 (201)
...++|+|+|+|||++. + ..++||+|+. +||+|+|++||+|++.+++.|||||+++++++..+ ..|++..
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~ 95 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence 45799999999999876 2 3799999985 68999999999999988889999999999987665 7899999
Q ss_pred EEEEEEEcCCCCeeEEeee--------ceeec----cCCCccceeechhhhcCCCCeEeCCEEEEEEEE
Q 037079 136 HFTLRIRDQVRGKHKEANT--------SIWFR----SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEV 192 (201)
Q Consensus 136 ~f~l~l~n~~~~~~~~~~~--------~~~F~----~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V 192 (201)
+++|+|+||.+.+|+.... -+++. .+||+++|+++++|+.+ .|||+||+|.|+|.|
T Consensus 96 ~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V 163 (164)
T cd03778 96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV 163 (164)
T ss_pred EEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence 9999999998766654322 12232 57999999999999864 699999999999987
No 9
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.93 E-value=4.8e-25 Score=167.58 Aligned_cols=123 Identities=22% Similarity=0.339 Sum_probs=100.3
Q ss_pred cEEEEEEccccccc-------CceEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCC-CCceEEEEEE
Q 037079 69 YKHVWKIENFSKLE-------AKRHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTIT-PGFKIYVHFT 138 (201)
Q Consensus 69 ~~~~w~I~nfS~l~-------~~~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~-~~w~~~~~f~ 138 (201)
++|.|+|.|||.++ ++.+.|++|.+| ||+|+|++||+|...+.++|+|+||++++++..+ ..|++.++++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 57999999999875 258999999999 9999999999999887789999999998854322 4799999999
Q ss_pred EEEEcCCCC--e---eEEee-----eceeec-----------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEE
Q 037079 139 LRIRDQVRG--K---HKEAN-----TSIWFR-----------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVS 193 (201)
Q Consensus 139 l~l~n~~~~--~---~~~~~-----~~~~F~-----------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~ 193 (201)
|+|++|.++ . +.... ....|. .+||+.+||++++|+. ++||+||+|+|+|+|.
T Consensus 81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEeC
Confidence 999999864 1 22111 012231 4699999999999986 7899999999999883
No 10
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.93 E-value=6e-25 Score=165.00 Aligned_cols=124 Identities=21% Similarity=0.292 Sum_probs=100.1
Q ss_pred cEEEEEEccccccc-----C--ceEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCC-CCCCCceEEEEEE
Q 037079 69 YKHVWKIENFSKLE-----A--KRHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSS-TITPGFKIYVHFT 138 (201)
Q Consensus 69 ~~~~w~I~nfS~l~-----~--~~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~-~~~~~w~~~~~f~ 138 (201)
|.+.|+|+||+++. + ..++||+|+.+ ||+|+|++||+|.+.+.++|+||||++++++ +....|++.++++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 57999999999754 2 37999999864 9999999999999987789999999998753 1233699999999
Q ss_pred EEEEcCCCCeeE--Eeee---ceeec-------cCCCccceeechhhhcCCCCeEeCCEEEEEEEE
Q 037079 139 LRIRDQVRGKHK--EANT---SIWFR-------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEV 192 (201)
Q Consensus 139 l~l~n~~~~~~~--~~~~---~~~F~-------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V 192 (201)
|+|++|.+..+. .... .+.|. ..||+++||++++|+....+||.||+++|+|+|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 999999864432 1111 24563 479999999999998633489999999999998
No 11
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.93 E-value=1.7e-24 Score=156.97 Aligned_cols=122 Identities=34% Similarity=0.569 Sum_probs=103.0
Q ss_pred cEEEEEEcccccccCceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEEEEEcCCCCe
Q 037079 69 YKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQVRGK 148 (201)
Q Consensus 69 ~~~~w~I~nfS~l~~~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l~n~~~~~ 148 (201)
++|+|+|.+|+...++.+.|+.|.++|++|+|.+||+|... ..++|||||+|.+.......|++.++++|+|++|++++
T Consensus 1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (126)
T cd00121 1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGK 79 (126)
T ss_pred CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCc
Confidence 36999999999955789999999999999999999999765 46899999999876544457999999999999999555
Q ss_pred eEEeeeceee--c--cCCCccceeechhhhcCCCCeEeCCEEEEEEEEE
Q 037079 149 HKEANTSIWF--R--SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVS 193 (201)
Q Consensus 149 ~~~~~~~~~F--~--~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~ 193 (201)
+......+.| . .+|||.+||++++|++ .++++||+|+|+|+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 80 SLSKSFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK 126 (126)
T ss_pred cceEeccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence 5544445555 3 8999999999999996 3449999999999984
No 12
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.93 E-value=1.3e-24 Score=169.36 Aligned_cols=126 Identities=20% Similarity=0.294 Sum_probs=103.6
Q ss_pred cCccEEEEEEccccccc-----Cc--eEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCC-CCCCCceEEE
Q 037079 66 ASIYKHVWKIENFSKLE-----AK--RHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSS-TITPGFKIYV 135 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~-----~~--~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~-~~~~~w~~~~ 135 (201)
...|.|.|+|.|||..+ ++ .+.|++|++| ||+|+|++||+|.+.++++|+|+||++++++ +....|++.+
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~ 115 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 115 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence 45799999999999875 34 7999999999 9999999999999987789999999998763 2234699999
Q ss_pred EEEEEEEcCCCCe-eEE-----eeeceeec-------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEE
Q 037079 136 HFTLRIRDQVRGK-HKE-----ANTSIWFR-------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVS 193 (201)
Q Consensus 136 ~f~l~l~n~~~~~-~~~-----~~~~~~F~-------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~ 193 (201)
+++|+|++|.+.. +.. ......|. .+||+++||++++|+. ++||+||+++|+|.|.
T Consensus 116 ~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 116 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD 184 (186)
T ss_pred EEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEe
Confidence 9999999997521 211 11124453 3699999999999986 7899999999999986
No 13
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.92 E-value=7.5e-25 Score=167.45 Aligned_cols=123 Identities=21% Similarity=0.364 Sum_probs=98.3
Q ss_pred ccEEEEEEccccccc-----CceEeeCeE-EEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCC-CCCCce-EEEEEEE
Q 037079 68 IYKHVWKIENFSKLE-----AKRHESEVF-IVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSST-ITPGFK-IYVHFTL 139 (201)
Q Consensus 68 ~~~~~w~I~nfS~l~-----~~~~~S~~f-~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~-~~~~w~-~~~~f~l 139 (201)
+++|+|+|.|||.++ ++.++|++| .+|||+|+|++||+|... .++||||||++++++. ....|+ +.++++|
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~ 79 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATM 79 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEE
Confidence 468999999999985 458999998 899999999999999988 7899999999987543 245799 5899999
Q ss_pred EEEcCCCC----eeEEe----e----e----ceee-------------------c-cCCCccceeechhhhcCCCCeEeC
Q 037079 140 RIRDQVRG----KHKEA----N----T----SIWF-------------------R-SSWGWPRFAELSYLNEAGNGFLVN 183 (201)
Q Consensus 140 ~l~n~~~~----~~~~~----~----~----~~~F-------------------~-~~~G~~~Fi~~~~L~~~~~gfl~d 183 (201)
+|++|... .+... . . ...| . .+|||++||++++|+. .+||+|
T Consensus 80 ~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~ 157 (167)
T cd03771 80 TLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKG 157 (167)
T ss_pred EEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcC
Confidence 99999741 12111 0 0 0001 1 3799999999999997 679999
Q ss_pred CEEEEEEEEE
Q 037079 184 DGCIVEAEVS 193 (201)
Q Consensus 184 D~l~ie~~V~ 193 (201)
|+|.|++++.
T Consensus 158 dtl~i~~~~~ 167 (167)
T cd03771 158 DDLIILLDFE 167 (167)
T ss_pred CEEEEEEEeC
Confidence 9999999873
No 14
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.91 E-value=8.2e-24 Score=152.90 Aligned_cols=114 Identities=32% Similarity=0.498 Sum_probs=95.1
Q ss_pred Eccccccc-C-ceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCC-CCceEEEEEEEEEEcCCCCeeEE
Q 037079 75 IENFSKLE-A-KRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTIT-PGFKIYVHFTLRIRDQVRGKHKE 151 (201)
Q Consensus 75 I~nfS~l~-~-~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~-~~w~~~~~f~l~l~n~~~~~~~~ 151 (201)
|+|||+++ + ..+.|+.|.++|++|+|.+||+|+ +++||+||+|..++... ..|++.++++++|+++.++....
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 76 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISK 76 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEE
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCccee
Confidence 78999997 3 345558889999999999999986 47999999999875443 58999999999999999886322
Q ss_pred eeeceeec--cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEE
Q 037079 152 ANTSIWFR--SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSV 194 (201)
Q Consensus 152 ~~~~~~F~--~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v 194 (201)
....+.|. .+|||.+||++++|+++ .|++||+|+|+|+|+|
T Consensus 77 ~~~~~~F~~~~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 77 RIKSHSFNNPSSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEECEEECTTSEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred eeeeeEEeeecccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence 22258888 78999999999999974 3899999999999986
No 15
>smart00061 MATH meprin and TRAF homology.
Probab=99.81 E-value=3.4e-19 Score=123.54 Aligned_cols=91 Identities=21% Similarity=0.308 Sum_probs=78.3
Q ss_pred EEEEEccccccc-CceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEEEEEcCCCCee
Q 037079 71 HVWKIENFSKLE-AKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQVRGKH 149 (201)
Q Consensus 71 ~~w~I~nfS~l~-~~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l~n~~~~~~ 149 (201)
++|+|+||+.+. ++.+.|++|.++|++|+|.+||+ ++|||+||.|.+....+..|++.|+++++|++|++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~ 75 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL 75 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence 579999999985 77899999999999999999999 37999999998765545579999999999999998655
Q ss_pred EEeeeceeec--cCCCcccee
Q 037079 150 KEANTSIWFR--SSWGWPRFA 168 (201)
Q Consensus 150 ~~~~~~~~F~--~~~G~~~Fi 168 (201)
.+...+.|. .+|||.+||
T Consensus 76 -~~~~~~~F~~~~~~G~~~fi 95 (95)
T smart00061 76 -SKKDKHVFEKPSGWGFSKFI 95 (95)
T ss_pred -eeeeeEEEcCCCccceeeEC
Confidence 344567787 789999886
No 16
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.81 E-value=2e-19 Score=136.39 Aligned_cols=123 Identities=20% Similarity=0.331 Sum_probs=97.1
Q ss_pred ccEEEEEEccccccc-----CceEeeCeEEE-cCeEEEEEEEeCCCCC-CCCCEEEEEEEEccCCCC-CCCceE-EEEEE
Q 037079 68 IYKHVWKIENFSKLE-----AKRHESEVFIV-RDQKWKIQLHPKGIKS-GTGSHVSMSLALVDSSTI-TPGFKI-YVHFT 138 (201)
Q Consensus 68 ~~~~~w~I~nfS~l~-----~~~~~S~~f~~-gg~~W~l~vyP~G~~~-~~~~~lSlyL~~~~~~~~-~~~w~~-~~~f~ 138 (201)
++.+.|+|.||+++. +..++||+|+. .||+.+|++||+|++. +++.|+|||++++.++.. ...|++ .-+++
T Consensus 1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it 80 (167)
T cd03783 1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI 80 (167)
T ss_pred CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence 357899999999865 35799999987 5999999999999874 567899999999987543 457995 56999
Q ss_pred EEEEcCCCC----eeEEe--------eec-----eeec-----------------cCCCccceeechhhhcCCCCeEeCC
Q 037079 139 LRIRDQVRG----KHKEA--------NTS-----IWFR-----------------SSWGWPRFAELSYLNEAGNGFLVND 184 (201)
Q Consensus 139 l~l~n~~~~----~~~~~--------~~~-----~~F~-----------------~~~G~~~Fi~~~~L~~~~~gfl~dD 184 (201)
|.|++|++. .+.+. ... ..|. .++||++||++++|+. .+||+||
T Consensus 81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdD 158 (167)
T cd03783 81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKND 158 (167)
T ss_pred EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCC
Confidence 999999741 12210 000 0122 4899999999999996 8999999
Q ss_pred EEEEEEEE
Q 037079 185 GCIVEAEV 192 (201)
Q Consensus 185 ~l~ie~~V 192 (201)
+|.|.+++
T Consensus 159 tlfI~~~~ 166 (167)
T cd03783 159 DLIIFVDF 166 (167)
T ss_pred eEEEEEec
Confidence 99999886
No 17
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.78 E-value=2.4e-18 Score=129.95 Aligned_cols=122 Identities=17% Similarity=0.251 Sum_probs=98.0
Q ss_pred ccEEEEEEccccccc-----CceEeeCeEEE-cCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceEE-EEEEE
Q 037079 68 IYKHVWKIENFSKLE-----AKRHESEVFIV-RDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKIY-VHFTL 139 (201)
Q Consensus 68 ~~~~~w~I~nfS~l~-----~~~~~S~~f~~-gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~~-~~f~l 139 (201)
++.+.|+|+||+++. +..++||+|+. .||+.++.+||+|.+.+ ++|||||+++++++.. ...|++. -+++|
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~ 79 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATM 79 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEE
Confidence 467999999999875 35899999974 79999999999999876 6899999999987543 4579999 89999
Q ss_pred EEEcCCC---C-eeEEe--e------ec--eee----------------------ccCCCccceeechhhhcCCCCeEeC
Q 037079 140 RIRDQVR---G-KHKEA--N------TS--IWF----------------------RSSWGWPRFAELSYLNEAGNGFLVN 183 (201)
Q Consensus 140 ~l~n~~~---~-~~~~~--~------~~--~~F----------------------~~~~G~~~Fi~~~~L~~~~~gfl~d 183 (201)
.|++|++ . .|.+. . .. ..| +.++||+.||++++|+. ..||+|
T Consensus 80 ~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikd 157 (167)
T cd03782 80 MLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKG 157 (167)
T ss_pred EEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccC
Confidence 9999974 1 23221 0 01 123 15799999999999996 789999
Q ss_pred CEEEEEEEE
Q 037079 184 DGCIVEAEV 192 (201)
Q Consensus 184 D~l~ie~~V 192 (201)
|++.|-+++
T Consensus 158 D~ifi~~~~ 166 (167)
T cd03782 158 DDVIFLLTM 166 (167)
T ss_pred CeEEEEEec
Confidence 999998876
No 18
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.2e-16 Score=138.62 Aligned_cols=128 Identities=25% Similarity=0.415 Sum_probs=107.7
Q ss_pred cCccEEEEEEcccccccCceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCC--CCC-CCceEEEEEEEEEE
Q 037079 66 ASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSS--TIT-PGFKIYVHFTLRIR 142 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~~~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~--~~~-~~w~~~~~f~l~l~ 142 (201)
.....++|+|+++|.+.. ++.||+|.+||+.|+|.++|+|+... -+||||+....+ ... ..|.|+|+|.+.|-
T Consensus 36 ~~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~---~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is 111 (1089)
T COG5077 36 LLEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQC---NVSVYLEYEPQELEETGGKYYDCCAQFAFDIS 111 (1089)
T ss_pred HhhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCcc---ccEEEEEeccchhhhhcCcchhhhhheeeecC
Confidence 556789999999999974 78999999999999999999998753 299999986532 112 35999999999999
Q ss_pred cCCCCe-eEEeeeceeec---cCCCccceeechhhhcCCCC---eEeCCEEEEEEEEEEEee
Q 037079 143 DQVRGK-HKEANTSIWFR---SSWGWPRFAELSYLNEAGNG---FLVNDGCIVEAEVSVLGI 197 (201)
Q Consensus 143 n~~~~~-~~~~~~~~~F~---~~~G~~~Fi~~~~L~~~~~g---fl~dD~l~ie~~V~v~~~ 197 (201)
|+..+. .....+.|+|+ .+|||.+|+.+..|..|+.| |+.++++.|.|.|+|++.
T Consensus 112 ~p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd 173 (1089)
T COG5077 112 NPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173 (1089)
T ss_pred CCCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence 988754 23456789999 89999999999999987765 788999999999999986
No 19
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.88 E-value=3.7e-08 Score=82.13 Aligned_cols=115 Identities=30% Similarity=0.571 Sum_probs=94.7
Q ss_pred EEEEEcccccccCceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEEEEEcCCCCee-
Q 037079 71 HVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQVRGKH- 149 (201)
Q Consensus 71 ~~w~I~nfS~l~~~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l~n~~~~~~- 149 (201)
+.|.+.+++... ..++|..|..+|..|++.+||.|+ +++.|+.+.... +|.+.+.+++.+.||...+.
T Consensus 6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~ 74 (297)
T KOG1987|consen 6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYL 74 (297)
T ss_pred cceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccCC----CcceeEEEEEEEccCCCccee
Confidence 349999999886 678999999999999999999983 899999887643 79999999999999998744
Q ss_pred EEe-eeceeec-----cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEe
Q 037079 150 KEA-NTSIWFR-----SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLG 196 (201)
Q Consensus 150 ~~~-~~~~~F~-----~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~ 196 (201)
... ....+|. ..||+.+.++...+.+++.||++++.+++-+.+.|.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~ 127 (297)
T KOG1987|consen 75 STVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFE 127 (297)
T ss_pred eeeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeeccee
Confidence 332 2333333 7899999999999999889999998888888776654
No 20
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=98.72 E-value=1.4e-08 Score=75.53 Aligned_cols=43 Identities=28% Similarity=0.594 Sum_probs=39.9
Q ss_pred eeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEEE
Q 037079 5 RRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV 47 (201)
Q Consensus 5 ~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~~ 47 (201)
.|+|+.....|||.+||+|++|+|+++|||+||+|+++++|.|
T Consensus 90 ~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~ 132 (137)
T cd03772 90 SHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQA 132 (137)
T ss_pred eeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEe
Confidence 4689888889999999999999999999999999999999983
No 21
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=98.55 E-value=7.2e-08 Score=71.41 Aligned_cols=43 Identities=23% Similarity=0.483 Sum_probs=38.7
Q ss_pred CceeeeeCCCcccccccccccccccCC----CCCeEEcCeEEEEEEE
Q 037079 3 GKRRRFHGLKLEWGFDQFIPLEEFNDA----SNGYLVDDTCVFGAEV 45 (201)
Q Consensus 3 ~~~~~f~~~~~~~G~~~f~~~~~~~~~----~~gy~~~d~~~~~~~v 45 (201)
+..|+|+....+|||.+||++++|++| ++|||+||+++++|+|
T Consensus 87 ~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~ 133 (134)
T cd03775 87 VAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYV 133 (134)
T ss_pred cceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEE
Confidence 346899988899999999999999966 6899999999999987
No 22
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.5e-07 Score=89.35 Aligned_cols=126 Identities=20% Similarity=0.247 Sum_probs=102.8
Q ss_pred cEEEEEEcccccccCceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEEEEEcCCCCe
Q 037079 69 YKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQVRGK 148 (201)
Q Consensus 69 ~~~~w~I~nfS~l~~~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l~n~~~~~ 148 (201)
...+|...+...+.. ...|+.|..|+.+|++.+.|+++. ...+++|+.+...... ..|++++++.+++.|..++.
T Consensus 27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~~ 101 (1093)
T KOG1863|consen 27 QSTTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDNL 101 (1093)
T ss_pred ccccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCC-cceEecchhhhccccCCCCc
Confidence 344566666655554 788999999999999999999983 3689999999876655 45999999999999933332
Q ss_pred -eEEeeeceeec---cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEeeec
Q 037079 149 -HKEANTSIWFR---SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGISK 199 (201)
Q Consensus 149 -~~~~~~~~~F~---~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~t~ 199 (201)
...+...|.|. .+||+.+|+.++++.++..||+.+|++.++++|.+...+.
T Consensus 102 ~~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~ 156 (1093)
T KOG1863|consen 102 PDPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTS 156 (1093)
T ss_pred hhhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCc
Confidence 33456778888 8999999999999999999999999999999999877554
No 23
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=98.21 E-value=8e-07 Score=66.09 Aligned_cols=43 Identities=37% Similarity=0.590 Sum_probs=38.2
Q ss_pred ceeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEEE
Q 037079 4 KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV 47 (201)
Q Consensus 4 ~~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~~ 47 (201)
..++|+. ..+|||.+||++++|+++.+|||.||+++|+++|.|
T Consensus 94 ~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V 136 (139)
T cd03774 94 RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 136 (139)
T ss_pred CcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEE
Confidence 3577875 579999999999999999999999999999999983
No 24
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=97.93 E-value=6.1e-06 Score=58.90 Aligned_cols=40 Identities=33% Similarity=0.691 Sum_probs=34.7
Q ss_pred eeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEEE
Q 037079 5 RRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV 47 (201)
Q Consensus 5 ~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~~ 47 (201)
.|+|+.. ..|||.+||+|++|.+|. |+.||+++|+|+|.|
T Consensus 80 ~~~F~~~-~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 80 SHSFNNP-SSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVKI 119 (119)
T ss_dssp CEEECTT-SEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred eeEEeee-cccchhheeEHHHhCccC--CeECCEEEEEEEEEC
Confidence 3677665 799999999999999775 999999999999863
No 25
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.77 E-value=9.5e-07 Score=73.67 Aligned_cols=190 Identities=21% Similarity=0.254 Sum_probs=120.8
Q ss_pred ceeeeeCCCcccccccccccccccCCCCCeEEc-CeEEEEEEEEEecccCCccceeEee------eccccCc----cEEE
Q 037079 4 KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVD-DTCVFGAEVLVKERNKCKGECLSMT------KLTSASI----YKHV 72 (201)
Q Consensus 4 ~~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~-d~~~~~~~v~~~~~~~~~~e~~~~~------~~~~~~~----~~~~ 72 (201)
...+|......||+.+++|+..+.+++.||+++ +.|.++.....++. .+.|..... .+..+.. ..|+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~--~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~ 159 (297)
T KOG1987|consen 82 SWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAM--GKSDVFKESSKLITLLEEKPEVLEALNGFQ 159 (297)
T ss_pred EeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeee--cccccchhccccccccccchhhHhhhceEE
Confidence 344555668999999999999999999999999 55555443323333 444433220 0111344 8899
Q ss_pred EEEcccccccC----ceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC--CCCceEEEEEEEEEEcCCC
Q 037079 73 WKIENFSKLEA----KRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI--TPGFKIYVHFTLRIRDQVR 146 (201)
Q Consensus 73 w~I~nfS~l~~----~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~--~~~w~~~~~f~l~l~n~~~ 146 (201)
|.+.+++.... ..+.+..|..++..|++.++|.+....+...++.||...+...+ ...-.+++....+.+|+..
T Consensus 160 ~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~ 239 (297)
T KOG1987|consen 160 VLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLE 239 (297)
T ss_pred EeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHH
Confidence 99999998872 36778999999999999999999876656788889887653211 1122234444445566654
Q ss_pred Ce--eE--Eeeeceeec---cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEe
Q 037079 147 GK--HK--EANTSIWFR---SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLG 196 (201)
Q Consensus 147 ~~--~~--~~~~~~~F~---~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~ 196 (201)
.+ +. .+....+.. ..+ ..++.++.++.....+++.++++.++++...++
T Consensus 240 ~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 295 (297)
T KOG1987|consen 240 KKLNEVKEKKKKDLWYEIRLQEL-EEELKSLKDKCSDLEGLLVKDKAEVEAESEPLS 295 (297)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhhhhhcccCCcC
Confidence 22 21 111111222 222 556777766665556788888888887766554
No 26
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=97.46 E-value=6.1e-05 Score=55.25 Aligned_cols=39 Identities=28% Similarity=0.577 Sum_probs=32.4
Q ss_pred eeeeeCCCcccccccccccccccCCCCCeEEc--CeEEEEEEEE
Q 037079 5 RRRFHGLKLEWGFDQFIPLEEFNDASNGYLVD--DTCVFGAEVL 46 (201)
Q Consensus 5 ~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~--d~~~~~~~v~ 46 (201)
.|+|.. ..+|||.+||++++|++ +|||.| |+++|++.|.
T Consensus 90 ~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 90 ASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred cccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence 467765 46899999999999974 799999 9999887763
No 27
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.24 E-value=0.00022 Score=61.97 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=68.3
Q ss_pred cCccEEEEEEccccccc-------CceEeeCeEEE--cCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceEEE
Q 037079 66 ASIYKHVWKIENFSKLE-------AKRHESEVFIV--RDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKIYV 135 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~-------~~~~~S~~f~~--gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~~~ 135 (201)
...+++.|+|.+++..+ ...+.|+.|+. .||.-+..+|-+|++.+++.++|+|+.+..++.. ...|+..-
T Consensus 277 ~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~ 356 (391)
T KOG0297|consen 277 SYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQ 356 (391)
T ss_pred ccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCC
Confidence 45799999999996544 35789999974 8999999999999999889999999999887543 45699999
Q ss_pred EEEEEEEcC
Q 037079 136 HFTLRIRDQ 144 (201)
Q Consensus 136 ~f~l~l~n~ 144 (201)
.+++.+++|
T Consensus 357 ~v~~~l~dq 365 (391)
T KOG0297|consen 357 KVTLMLLDQ 365 (391)
T ss_pred ceEEEEecc
Confidence 999999999
No 28
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=97.17 E-value=0.00029 Score=50.10 Aligned_cols=38 Identities=37% Similarity=0.719 Sum_probs=31.6
Q ss_pred eeee-CCCcccccccccccccccCCCCCeEEcCeEEEEEEE
Q 037079 6 RRFH-GLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEV 45 (201)
Q Consensus 6 ~~f~-~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v 45 (201)
+.|+ ....+|||.+||+|++|+++. ++.||+++|+++|
T Consensus 87 ~~~~~~~~~~~G~~~fi~~~~l~~~~--~~~~d~l~i~~~v 125 (126)
T cd00121 87 HVFFSEKGSGWGFPKFISWDDLEDSY--YLVDDSLTIEVEV 125 (126)
T ss_pred CCcCCCCCCCCChHHeeEHHHhccCC--cEECCEEEEEEEE
Confidence 3443 667899999999999999653 3999999999987
No 29
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.015 Score=53.93 Aligned_cols=45 Identities=31% Similarity=0.513 Sum_probs=40.0
Q ss_pred CCceeeeeCCCcccccccccccccccCCCCCe---EEcCeEEEEEEEE
Q 037079 2 HGKRRRFHGLKLEWGFDQFIPLEEFNDASNGY---LVDDTCVFGAEVL 46 (201)
Q Consensus 2 ~~~~~~f~~~~~~~G~~~f~~~~~~~~~~~gy---~~~d~~~~~~~v~ 46 (201)
....|||+...++|||++|+.+..+.-|+.|. +.++++++.|.|.
T Consensus 122 N~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVR 169 (1089)
T COG5077 122 NKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVR 169 (1089)
T ss_pred hcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEE
Confidence 35679999999999999999999999887774 7788999999988
No 30
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.015 Score=57.01 Aligned_cols=48 Identities=17% Similarity=0.357 Sum_probs=44.5
Q ss_pred ceeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEE-Eeccc
Q 037079 4 KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVL-VKERN 51 (201)
Q Consensus 4 ~~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~-~~~~~ 51 (201)
..|+|....++||+++|+.++++.+|..||+.+|++.++++|. -+++.
T Consensus 108 ~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~ 156 (1093)
T KOG1863|consen 108 IHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTS 156 (1093)
T ss_pred hhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCc
Confidence 5799999999999999999999999999999999999999999 56653
No 31
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=33.28 E-value=74 Score=21.01 Aligned_cols=16 Identities=25% Similarity=0.694 Sum_probs=14.0
Q ss_pred EEcCeEEEEEEEeCCC
Q 037079 92 IVRDQKWKIQLHPKGI 107 (201)
Q Consensus 92 ~~gg~~W~l~vyP~G~ 107 (201)
+++|++|+-.+.|+|.
T Consensus 38 tI~g~~~~~sl~p~g~ 53 (80)
T PF08922_consen 38 TIDGHPWRTSLFPMGN 53 (80)
T ss_dssp EETTEEEEEEEEESST
T ss_pred EECCEEEEEEEEECCC
Confidence 5799999999999764
Done!