Query 037079
Match_columns 201
No_of_seqs 272 out of 1156
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 14:07:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2foj_A Ubiquitin carboxyl-term 100.0 5.8E-33 2E-37 210.0 15.1 133 66-200 16-153 (155)
2 3ivv_A Speckle-type POZ protei 100.0 2.9E-32 9.8E-37 204.1 12.5 128 66-197 8-145 (145)
3 4gjh_A TNF receptor-associated 100.0 5.1E-31 1.8E-35 203.8 7.2 132 66-197 21-175 (178)
4 1ca9_A TRAF2, protein (TNF rec 100.0 3.1E-30 1.1E-34 201.6 7.1 130 66-196 40-191 (192)
5 1d00_A Tumor necrosis factor r 100.0 7.9E-30 2.7E-34 195.2 6.6 130 66-196 16-167 (168)
6 4ghu_A TNF receptor-associated 100.0 2.1E-29 7.3E-34 197.7 6.6 132 66-199 37-191 (198)
7 1lb6_A TNF receptor-associated 100.0 1.1E-28 3.7E-33 187.6 10.0 130 66-197 2-158 (160)
8 2gkw_A TNF receptor-associated 100.0 4.5E-29 1.5E-33 195.1 7.0 129 66-196 37-188 (192)
9 3hqi_A Speckle-type POZ protei 99.9 1.2E-27 4.2E-32 199.3 12.4 128 66-197 4-141 (312)
10 1flk_A TNF receptor associated 99.9 2.5E-28 8.6E-33 195.6 6.3 131 66-198 73-226 (228)
11 2f1z_A Ubiquitin carboxyl-term 99.9 8.3E-27 2.8E-31 207.0 11.9 131 66-198 28-163 (522)
12 4gwm_A Meprin A subunit beta; 99.5 9.9E-14 3.4E-18 123.8 10.0 124 66-196 403-567 (592)
13 2foj_A Ubiquitin carboxyl-term 98.8 1.3E-09 4.5E-14 81.4 3.1 47 4-50 104-151 (155)
14 3ivv_A Speckle-type POZ protei 98.6 4.9E-09 1.7E-13 77.4 0.9 43 4-47 100-142 (145)
15 2f1z_A Ubiquitin carboxyl-term 98.1 9.3E-07 3.2E-11 78.1 1.9 47 4-50 116-163 (522)
16 3hqi_A Speckle-type POZ protei 98.1 1.1E-06 3.8E-11 72.4 2.0 42 4-46 96-137 (312)
17 4gwm_A Meprin A subunit beta; 83.7 0.35 1.2E-05 43.2 1.4 36 13-50 533-569 (592)
18 3v0r_A Major allergen ALT A 1; 38.5 6.9 0.00024 27.7 0.1 28 66-93 9-38 (133)
19 3ulj_A LIN28B, DNA-binding pro 32.3 43 0.0015 21.9 3.3 38 3-43 11-66 (90)
20 2d9r_A Conserved hypothetical 24.0 85 0.0029 21.0 3.6 15 92-106 59-73 (104)
21 1jya_A YOPE regulator; specifi 23.0 1.2E+02 0.004 21.3 4.2 32 84-124 24-55 (130)
No 1
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=100.00 E-value=5.8e-33 Score=209.99 Aligned_cols=133 Identities=20% Similarity=0.275 Sum_probs=113.8
Q ss_pred cCccEEEEEEcccccccCceEeeCeEEEcCeEEEEEEEeCCCCC-CCCCEEEEEEEEccCCCCCCCceEEEEEEEEEEcC
Q 037079 66 ASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKS-GTGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQ 144 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~~~~~~S~~f~~gg~~W~l~vyP~G~~~-~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l~n~ 144 (201)
...++|+|+|+|||.++ +.++|++|.+||++|+|++||+|+.. +.++||||||+|... ..+.+|++.|+|+|+|+||
T Consensus 16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~~ 93 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY 93 (155)
T ss_dssp CSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECCS
T ss_pred CCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEcC
Confidence 56789999999999996 78999999999999999999999865 356899999999644 4456799999999999999
Q ss_pred CCCe-eEEeeeceeec---cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEeeecC
Q 037079 145 VRGK-HKEANTSIWFR---SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGISKA 200 (201)
Q Consensus 145 ~~~~-~~~~~~~~~F~---~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~t~~ 200 (201)
.++. +..+...++|. .+|||++||++++|+++++|||+||+|+|+|+|+|.++|..
T Consensus 94 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~ 153 (155)
T 2foj_A 94 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV 153 (155)
T ss_dssp SCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSS
T ss_pred CCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcccc
Confidence 9865 45556678886 68999999999999988899999999999999999888763
No 2
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.98 E-value=2.9e-32 Score=204.08 Aligned_cols=128 Identities=26% Similarity=0.479 Sum_probs=112.3
Q ss_pred cCccEEEEEEccccccc---CceEeeCeEEEcCe---EEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEE
Q 037079 66 ASIYKHVWKIENFSKLE---AKRHESEVFIVRDQ---KWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTL 139 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~---~~~~~S~~f~~gg~---~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l 139 (201)
...++|+|+|+|||.++ ++.++|++|.+||| +|+|++||+|+..+.++||||||+|.+. +.|++.|+|+|
T Consensus 8 ~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f~l 83 (145)
T 3ivv_A 8 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKF 83 (145)
T ss_dssp CCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEEEE
T ss_pred EEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEEEE
Confidence 67899999999999986 47899999999996 9999999999887667899999999875 36999999999
Q ss_pred EEEcCCCCeeEE--eeeceeec--cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEee
Q 037079 140 RIRDQVRGKHKE--ANTSIWFR--SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGI 197 (201)
Q Consensus 140 ~l~n~~~~~~~~--~~~~~~F~--~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~ 197 (201)
+|+||.++.+.. ....++|. .+|||++||++++|+++++|||+||+|+|+|+|+|+++
T Consensus 84 ~llnq~~~~~~~~~~~~~~~F~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 84 SILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EEECTTSCEEEEEECSSCEEEETTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEEecCCCceeeecccceEEecCCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 999999876542 23467787 78999999999999876789999999999999999863
No 3
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.97 E-value=5.1e-31 Score=203.83 Aligned_cols=132 Identities=21% Similarity=0.295 Sum_probs=110.9
Q ss_pred cCccEEEEEEcccccccC-------ceEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCCC-CCCCceEEE
Q 037079 66 ASIYKHVWKIENFSKLEA-------KRHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSST-ITPGFKIYV 135 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~~-------~~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~-~~~~w~~~~ 135 (201)
+..++|+|+|+|||.+++ ..++|++|.+| ||+|+|++||+|+..+.++||||||+|.+++. ....|++.|
T Consensus 21 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~a 100 (178)
T 4gjh_A 21 CYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQ 100 (178)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCCC
T ss_pred ccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceEE
Confidence 678999999999998863 27999999999 99999999999988766799999999987542 234799999
Q ss_pred EEEEEEEcCCCCe-eEEee-----eceeec-------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEee
Q 037079 136 HFTLRIRDQVRGK-HKEAN-----TSIWFR-------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGI 197 (201)
Q Consensus 136 ~f~l~l~n~~~~~-~~~~~-----~~~~F~-------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~ 197 (201)
+|+|+|+||.++. +..+. ..+.|. .+|||++||++++|+++++|||+||+|+|+|+|.|.+.
T Consensus 101 ~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~ 175 (178)
T 4gjh_A 101 RVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL 175 (178)
T ss_dssp EEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred EEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence 9999999998754 33321 235564 47999999999999988899999999999999977553
No 4
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.96 E-value=3.1e-30 Score=201.64 Aligned_cols=130 Identities=21% Similarity=0.313 Sum_probs=108.9
Q ss_pred cCccEEEEEEcccccccC-----c--eEeeCeEEE--cCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCC-CCceEEE
Q 037079 66 ASIYKHVWKIENFSKLEA-----K--RHESEVFIV--RDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTIT-PGFKIYV 135 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~~-----~--~~~S~~f~~--gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~-~~w~~~~ 135 (201)
...++|+|+|+|||.+++ + .++||+|.+ |||+|+|++||+|++.+.++||||||+|.+++..+ ..|++.|
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence 578999999999999862 2 599999999 99999999999998876679999999998775433 5799999
Q ss_pred EEEEEEEcCCCCeeEEeeec-----eeec-------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEe
Q 037079 136 HFTLRIRDQVRGKHKEANTS-----IWFR-------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLG 196 (201)
Q Consensus 136 ~f~l~l~n~~~~~~~~~~~~-----~~F~-------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~ 196 (201)
+|+|+|+||.++++.+.... ..|. .+|||++||++++|++ .+|||+||+|+|+|+|+|.+
T Consensus 120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 99999999998765432221 2232 5899999999999995 47999999999999998754
No 5
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.96 E-value=7.9e-30 Score=195.16 Aligned_cols=130 Identities=22% Similarity=0.318 Sum_probs=107.8
Q ss_pred cCccEEEEEEccccccc-----Cc--eEeeCeEE--EcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCC-CCceEEE
Q 037079 66 ASIYKHVWKIENFSKLE-----AK--RHESEVFI--VRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTIT-PGFKIYV 135 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~-----~~--~~~S~~f~--~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~-~~w~~~~ 135 (201)
...++|+|+|+|||.++ ++ .++||+|. +|||+|+|++||+|+..+.++||||||+|.+++..+ .+|++.|
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~ 95 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence 46899999999999986 23 39999997 799999999999998776679999999998765433 5799999
Q ss_pred EEEEEEEcCCCCeeEEeee-----ceeec-------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEe
Q 037079 136 HFTLRIRDQVRGKHKEANT-----SIWFR-------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLG 196 (201)
Q Consensus 136 ~f~l~l~n~~~~~~~~~~~-----~~~F~-------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~ 196 (201)
+|+|+|+||.+..+.+... .+.|. .+|||++||++++|+++ +|||+||+|+|+|+|+|.+
T Consensus 96 ~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~ 167 (168)
T 1d00_A 96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG 167 (168)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence 9999999999876543321 12342 57999999999999974 4999999999999998743
No 6
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.95 E-value=2.1e-29 Score=197.72 Aligned_cols=132 Identities=17% Similarity=0.209 Sum_probs=109.3
Q ss_pred cCccEEEEEEcccccccC-------ceEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceEEE
Q 037079 66 ASIYKHVWKIENFSKLEA-------KRHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKIYV 135 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~~-------~~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~~~ 135 (201)
+..++|+|+|+|||.+++ +.++|++|.+| ||+|+|++||+|++.+.++||||||++.+++.. ...|++.|
T Consensus 37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a 116 (198)
T 4ghu_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 116 (198)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEEE
Confidence 578999999999998863 58999999999 999999999999987667999999999876432 34799999
Q ss_pred EEEEEEEcCCCCe-eEEeee---------ceeec---cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEeeec
Q 037079 136 HFTLRIRDQVRGK-HKEANT---------SIWFR---SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGISK 199 (201)
Q Consensus 136 ~f~l~l~n~~~~~-~~~~~~---------~~~F~---~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~t~ 199 (201)
+|+|+|+||.+.. +..... .+.|. .+|||++||++++|++ +|||+||+|+|+|+|.|+...+
T Consensus 117 ~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~~ 191 (198)
T 4ghu_A 117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD 191 (198)
T ss_dssp CEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC-
T ss_pred EEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCCC
Confidence 9999999998653 332211 11232 6899999999999996 8999999999999999876544
No 7
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.95 E-value=1.1e-28 Score=187.55 Aligned_cols=130 Identities=22% Similarity=0.222 Sum_probs=103.5
Q ss_pred cCccEEEEEEccccccc-----Cc--eEeeCeEEEc--CeEEEEEEEeCCCCCCC-CCEEEEEEEEccCCCC-CCCceEE
Q 037079 66 ASIYKHVWKIENFSKLE-----AK--RHESEVFIVR--DQKWKIQLHPKGIKSGT-GSHVSMSLALVDSSTI-TPGFKIY 134 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~-----~~--~~~S~~f~~g--g~~W~l~vyP~G~~~~~-~~~lSlyL~~~~~~~~-~~~w~~~ 134 (201)
+..++|+|+|+|||.++ ++ .+.|++|.+| ||+|+|++||+|+..+. ++||||||++++++.. ...|++.
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~ 81 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence 35689999999999986 33 8999999999 99999999999987643 6899999999876432 3469999
Q ss_pred EEEEEEEEcCCCCe---eEEeee-----ceeec--------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEee
Q 037079 135 VHFTLRIRDQVRGK---HKEANT-----SIWFR--------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGI 197 (201)
Q Consensus 135 ~~f~l~l~n~~~~~---~~~~~~-----~~~F~--------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~ 197 (201)
|+|+|+|+||.+.. +.+... ...|. .+|||++||++++|+. +|||+||+|+|+|+|.|+.+
T Consensus 82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC---
T ss_pred eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEeec
Confidence 99999999998752 221111 11231 3799999999999995 89999999999999999764
No 8
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.95 E-value=4.5e-29 Score=195.12 Aligned_cols=129 Identities=19% Similarity=0.264 Sum_probs=108.0
Q ss_pred cCccEEEEEEccccccc-----Cc--eEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceEEE
Q 037079 66 ASIYKHVWKIENFSKLE-----AK--RHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKIYV 135 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~-----~~--~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~~~ 135 (201)
...++|+|+|+|||.++ ++ .++|++|.+| ||+|+|++||+|++.+.++|||+||++++++.. ...|++.+
T Consensus 37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 116 (192)
T 2gkw_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 116 (192)
T ss_dssp CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEE
Confidence 46799999999999986 33 5999999999 999999999999887667999999999876543 34799999
Q ss_pred EEEEEEEcCCCCe-eEEeee-----ceeec-------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEe
Q 037079 136 HFTLRIRDQVRGK-HKEANT-----SIWFR-------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLG 196 (201)
Q Consensus 136 ~f~l~l~n~~~~~-~~~~~~-----~~~F~-------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~ 196 (201)
+|+|+|+||.+.. +..... .+.|. .+|||++||++++|++ +|||+||+|+|+|+|.|.+
T Consensus 117 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp CEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCC
Confidence 9999999999863 433221 14563 5799999999999997 6999999999999997754
No 9
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.95 E-value=1.2e-27 Score=199.34 Aligned_cols=128 Identities=25% Similarity=0.456 Sum_probs=108.0
Q ss_pred cCccEEEEEEccccccc---CceEeeCeEEEcCe---EEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCCCceEEEEEEE
Q 037079 66 ASIYKHVWKIENFSKLE---AKRHESEVFIVRDQ---KWKIQLHPKGIKSGTGSHVSMSLALVDSSTITPGFKIYVHFTL 139 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~---~~~~~S~~f~~gg~---~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~~~~w~~~~~f~l 139 (201)
...++|+|+|+|||.++ ++.+.|++|.+||+ +|+|.+||+|+..+.++|+|+||+|.+.+ .|++.|+|+|
T Consensus 4 ~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~~----~~~v~a~~~~ 79 (312)
T 3hqi_A 4 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKF 79 (312)
T ss_dssp EEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEECC----C-CEEEEEEE
T ss_pred eEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCCC----CCcEEEEEEE
Confidence 34689999999999996 67999999999995 99999999998876679999999998653 6999999999
Q ss_pred EEEcCCCCeeEEe--eeceeec--cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEee
Q 037079 140 RIRDQVRGKHKEA--NTSIWFR--SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGI 197 (201)
Q Consensus 140 ~l~n~~~~~~~~~--~~~~~F~--~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~ 197 (201)
+|+||+++..... ...++|. .+|||++||+|++|+++.+|||+||+|+|+|+|+|++.
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~F~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~ 141 (312)
T 3hqi_A 80 SILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD 141 (312)
T ss_dssp EEECTTSCEEEEEECSSCEEECTTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred EEEeCCCCcccccccCCceeCCCCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence 9999998765432 3567787 78999999999999887789999999999999999953
No 10
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.95 E-value=2.5e-28 Score=195.62 Aligned_cols=131 Identities=18% Similarity=0.260 Sum_probs=109.3
Q ss_pred cCccEEEEEEcccccccC-------ceEeeCeEEEc--CeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceEEE
Q 037079 66 ASIYKHVWKIENFSKLEA-------KRHESEVFIVR--DQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKIYV 135 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~~-------~~~~S~~f~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~~~ 135 (201)
...++|+|+|+|||.+++ ..++|++|.+| ||+|+|++||+|++.+.++|||+||++++++.. ...|++.|
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a 152 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 152 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence 478999999999999862 27999999999 999999999999987677999999999876543 34799999
Q ss_pred EEEEEEEcCCCCe-eEEee-----eceeec-------cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEeee
Q 037079 136 HFTLRIRDQVRGK-HKEAN-----TSIWFR-------SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGIS 198 (201)
Q Consensus 136 ~f~l~l~n~~~~~-~~~~~-----~~~~F~-------~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~t 198 (201)
+|+|+|+||.+.. +.+.. ..+.|. .+|||++||++++|++ +|||+||+|+|+|+|.|.+..
T Consensus 153 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~ 226 (228)
T 1flk_A 153 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 226 (228)
T ss_dssp CEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTSC
T ss_pred EEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEccccc
Confidence 9999999999865 33221 123453 5899999999999996 799999999999999886643
No 11
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.94 E-value=8.3e-27 Score=206.98 Aligned_cols=131 Identities=21% Similarity=0.280 Sum_probs=110.2
Q ss_pred cCccEEEEEEcccccccCceEeeCeEEEcCeEEEEEEEeCCCCCC-CCCEEEEEEEEccCCCCCCCceEEEEEEEEEEcC
Q 037079 66 ASIYKHVWKIENFSKLEAKRHESEVFIVRDQKWKIQLHPKGIKSG-TGSHVSMSLALVDSSTITPGFKIYVHFTLRIRDQ 144 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~~~~~~S~~f~~gg~~W~l~vyP~G~~~~-~~~~lSlyL~~~~~~~~~~~w~~~~~f~l~l~n~ 144 (201)
...++|+|+|+|||.+++ .++|++|.+||++|+|.+||+|+..+ .++||||||+|.+. ..+.+|++.|+|+|+|+||
T Consensus 28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~ 105 (522)
T 2f1z_A 28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY 105 (522)
T ss_dssp CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCT
T ss_pred cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcC
Confidence 557899999999999976 89999999999999999999997543 56899999999876 4567899999999999999
Q ss_pred CCCe-eEEeeeceeec---cCCCccceeechhhhcCCCCeEeCCEEEEEEEEEEEeee
Q 037079 145 VRGK-HKEANTSIWFR---SSWGWPRFAELSYLNEAGNGFLVNDGCIVEAEVSVLGIS 198 (201)
Q Consensus 145 ~~~~-~~~~~~~~~F~---~~~G~~~Fi~~~~L~~~~~gfl~dD~l~ie~~V~v~~~t 198 (201)
.++. +..+...++|. .+|||.+||++++|.++.+|||+||+++|+|+|+|...+
T Consensus 106 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~ 163 (522)
T 2f1z_A 106 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 163 (522)
T ss_dssp TCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred CCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence 8764 45566778887 689999999999998777999999999999999996544
No 12
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.48 E-value=9.9e-14 Score=123.82 Aligned_cols=124 Identities=17% Similarity=0.288 Sum_probs=98.6
Q ss_pred cCccEEEEEEccccccc---CceEeeCeEE-EcCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCC-CCCceE-EEEEEE
Q 037079 66 ASIYKHVWKIENFSKLE---AKRHESEVFI-VRDQKWKIQLHPKGIKSGTGSHVSMSLALVDSSTI-TPGFKI-YVHFTL 139 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~---~~~~~S~~f~-~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~~~~-~~~w~~-~~~f~l 139 (201)
..+..+.|+|.||+++. +..++||+|+ ..||.++|.+||++ +.|+|||++|..++.. ...|++ .-++++
T Consensus 403 G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~ 477 (592)
T 4gwm_A 403 TRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQATM 477 (592)
T ss_dssp SCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEEE
T ss_pred CCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEEE
Confidence 67889999999999986 5689999998 47999999999976 4799999999987543 457999 578999
Q ss_pred EEEcCCCCe----eEEeee-----------c------------eee-------c-cCCCccceeechhhhcCCCCeEeCC
Q 037079 140 RIRDQVRGK----HKEANT-----------S------------IWF-------R-SSWGWPRFAELSYLNEAGNGFLVND 184 (201)
Q Consensus 140 ~l~n~~~~~----~~~~~~-----------~------------~~F-------~-~~~G~~~Fi~~~~L~~~~~gfl~dD 184 (201)
.|++|.+.. +.++.. . ..| . .+|||+.||+++.|.. ..||+||
T Consensus 478 ~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~fiK~d 555 (592)
T 4gwm_A 478 TLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDFIKGD 555 (592)
T ss_dssp EECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTSSBTT
T ss_pred EEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCcccCC
Confidence 999998642 211110 0 011 1 5689999999999986 6799999
Q ss_pred EEEEEEEEEEEe
Q 037079 185 GCIVEAEVSVLG 196 (201)
Q Consensus 185 ~l~ie~~V~v~~ 196 (201)
.|+|.++|+-+.
T Consensus 556 ~~~i~~~~eD~~ 567 (592)
T 4gwm_A 556 DVYILLTVEDIS 567 (592)
T ss_dssp BEEEEEEEEECG
T ss_pred eEEEEEEEEeCc
Confidence 999999997654
No 13
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=98.83 E-value=1.3e-09 Score=81.38 Aligned_cols=47 Identities=26% Similarity=0.504 Sum_probs=42.4
Q ss_pred ceeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEE-Eecc
Q 037079 4 KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVL-VKER 50 (201)
Q Consensus 4 ~~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~-~~~~ 50 (201)
..|+|.....+|||.+||+|++|+||++|||+||+++|+|+|. .+|+
T Consensus 104 ~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t 151 (155)
T 2foj_A 104 ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 151 (155)
T ss_dssp EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence 3688998888999999999999999999999999999999999 4444
No 14
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=98.64 E-value=4.9e-09 Score=77.41 Aligned_cols=43 Identities=37% Similarity=0.590 Sum_probs=39.0
Q ss_pred ceeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEEE
Q 037079 4 KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVLV 47 (201)
Q Consensus 4 ~~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~~ 47 (201)
..|+|+. ..+|||.+||++++|+|+++|||+||+++|+|+|.|
T Consensus 100 ~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V 142 (145)
T 3ivv_A 100 RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 142 (145)
T ss_dssp SCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEE
T ss_pred ceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEE
Confidence 4688974 679999999999999999999999999999999983
No 15
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=98.07 E-value=9.3e-07 Score=78.09 Aligned_cols=47 Identities=26% Similarity=0.504 Sum_probs=42.2
Q ss_pred ceeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEE-Eecc
Q 037079 4 KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVL-VKER 50 (201)
Q Consensus 4 ~~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~-~~~~ 50 (201)
..|+|.....+|||.+||++++|.|+++|||+||+++|+|+|. ..|+
T Consensus 116 ~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~ 163 (522)
T 2f1z_A 116 ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 163 (522)
T ss_dssp CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence 3588988888999999999999999999999999999999999 4443
No 16
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=98.06 E-value=1.1e-06 Score=72.41 Aligned_cols=42 Identities=36% Similarity=0.523 Sum_probs=38.5
Q ss_pred ceeeeeCCCcccccccccccccccCCCCCeEEcCeEEEEEEEE
Q 037079 4 KRRRFHGLKLEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVL 46 (201)
Q Consensus 4 ~~~~f~~~~~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~ 46 (201)
..|+|+.. .+|||.+||+|++|+++++|||+||+++++++|.
T Consensus 96 ~~~~F~~~-~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~ 137 (312)
T 3hqi_A 96 RAYRFVQG-KDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVS 137 (312)
T ss_dssp SCEEECTT-CEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEE
T ss_pred CceeCCCC-CCcCHHHhccHHHhhccccCeecCCEEEEEEEEE
Confidence 46788854 5999999999999999999999999999999999
No 17
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=83.70 E-value=0.35 Score=43.17 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=31.1
Q ss_pred cccccccccccccccCCCCCeEEcCeEEEEEEEE-Eecc
Q 037079 13 LEWGFDQFIPLEEFNDASNGYLVDDTCVFGAEVL-VKER 50 (201)
Q Consensus 13 ~~~G~~~f~~~~~~~~~~~gy~~~d~~~~~~~v~-~~~~ 50 (201)
..|||+.||+++.|. +..||.||.++|-|.|. +...
T Consensus 533 ~~~G~~~fish~~l~--~r~fiK~d~~~i~~~~eD~~~l 569 (592)
T 4gwm_A 533 GGYGTSAFITHERLK--SRDFIKGDDVYILLTVEDISHL 569 (592)
T ss_dssp EEEEEEEEEEHHHHT--STTSSBTTBEEEEEEEEECGGG
T ss_pred CCcCccccccHHHHh--hcCcccCCeEEEEEEEEeCccc
Confidence 468999999999998 56799999999999998 5444
No 18
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=38.53 E-value=6.9 Score=27.69 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=22.0
Q ss_pred cCccEEEEEEccccccc--CceEeeCeEEE
Q 037079 66 ASIYKHVWKIENFSKLE--AKRHESEVFIV 93 (201)
Q Consensus 66 ~~~~~~~w~I~nfS~l~--~~~~~S~~f~~ 93 (201)
+..+.++|+|.+|+..+ +..+.|-.|.+
T Consensus 9 ~~~gd~vwkIs~F~~RKpeGty~nsvsFnI 38 (133)
T 3v0r_A 9 TTEGDYVWKISEFYGRKPEGTYYNSLGFNI 38 (133)
T ss_dssp CCCCTTEEEEEEEEEEETTSSSCSEEEEEE
T ss_pred ccCCceEEEeeeeeeEcCCCCceeeEEEEE
Confidence 45688999999999887 55677777754
No 19
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=32.28 E-value=43 Score=21.87 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=22.2
Q ss_pred CceeeeeCCCccccccc---------------ccccccccCCCCCe--EEc-CeEEEEE
Q 037079 3 GKRRRFHGLKLEWGFDQ---------------FIPLEEFNDASNGY--LVD-DTCVFGA 43 (201)
Q Consensus 3 ~~~~~f~~~~~~~G~~~---------------f~~~~~~~~~~~gy--~~~-d~~~~~~ 43 (201)
|+++-|+..+ .+||.. |+..+.|.. .|| |.. +.+.|++
T Consensus 11 G~VKWFn~~K-GfGFI~~~~~~~~p~dgg~DvFVH~s~i~~--~g~~~L~eG~~V~f~v 66 (90)
T 3ulj_A 11 GHCKWFNVRM-GFGFISMTSREGSPLENPVDVFVHQSKLYM--EGFRSLKEGEPVEFTF 66 (90)
T ss_dssp EEEEEEETTT-TEEEEEEEEETTEEEEEEEEEEEEGGGBCC--SSSCCCCTTCEEEEEE
T ss_pred eEEEEeeCCC-CeEEeEecCcCcCCCCCCccEEEEeehhcc--cCCCccCCCCEEEEEE
Confidence 5677677655 778763 666666652 343 443 5666644
No 20
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=23.98 E-value=85 Score=21.03 Aligned_cols=15 Identities=7% Similarity=0.005 Sum_probs=14.0
Q ss_pred EEcCeEEEEEEEeCC
Q 037079 92 IVRDQKWKIQLHPKG 106 (201)
Q Consensus 92 ~~gg~~W~l~vyP~G 106 (201)
+++|++|+-.+.|.|
T Consensus 59 tI~g~~~~tsL~p~g 73 (104)
T 2d9r_A 59 TFDGYPYTGYIVRMG 73 (104)
T ss_dssp EETTEEEEEEEEESS
T ss_pred EECCEEEEEEEEECC
Confidence 579999999999998
No 21
>1jya_A YOPE regulator; specific chaperone, type III secretion; 1.74A {Yersinia pseudotuberculosis} SCOP: d.198.1.1 PDB: 1k6z_A 1n5b_A 1l2w_A
Probab=23.01 E-value=1.2e+02 Score=21.27 Aligned_cols=32 Identities=16% Similarity=0.001 Sum_probs=25.5
Q ss_pred ceEeeCeEEEcCeEEEEEEEeCCCCCCCCCEEEEEEEEccC
Q 037079 84 KRHESEVFIVRDQKWKIQLHPKGIKSGTGSHVSMSLALVDS 124 (201)
Q Consensus 84 ~~~~S~~f~~gg~~W~l~vyP~G~~~~~~~~lSlyL~~~~~ 124 (201)
+.+. .+.+||+...|..||. ++|.+|-.+...
T Consensus 24 e~I~--SL~Vd~~t~hite~p~-------~~LlmFs~L~~~ 55 (130)
T 1jya_A 24 EPVI--GVKVGEFACHITEHPV-------GQILMFTLPSLD 55 (130)
T ss_dssp CSEE--EEEETTEEEEEEECST-------TEEEEEECCCCC
T ss_pred CceE--EEEECCeEEEEEecCC-------CeEEEEeccCcc
Confidence 3454 4779999999999998 599999887653
Done!