Query 037081
Match_columns 75
No_of_seqs 102 out of 250
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 14:08:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_f 60S ribosomal protein L 99.6 1.2E-16 4E-21 105.3 4.3 56 20-75 4-62 (112)
2 3vi6_A 60S ribosomal protein L 99.5 3.9E-15 1.3E-19 99.4 2.9 56 20-75 5-63 (125)
3 3j21_Z 50S ribosomal protein L 99.4 6.9E-14 2.4E-18 88.8 4.7 48 28-75 1-51 (99)
4 3u5e_c L32, RP73, YL38, 60S ri 99.4 5.1E-14 1.7E-18 90.7 4.0 51 25-75 5-58 (105)
5 4a18_G RPL30; ribosome, eukary 99.4 1.2E-13 4E-18 88.7 4.6 53 23-75 3-58 (104)
6 3cpq_A 50S ribosomal protein L 99.3 1.5E-12 5E-17 84.3 4.5 52 24-75 3-57 (110)
7 1w41_A 50S ribosomal protein L 99.3 1.6E-12 5.3E-17 82.6 4.2 47 28-74 2-51 (101)
8 3v7q_A Probable ribosomal prot 99.2 1.4E-11 4.7E-16 78.7 4.5 48 28-75 5-55 (101)
9 3on1_A BH2414 protein; structu 99.2 1.2E-11 4.2E-16 78.6 4.2 47 28-74 4-53 (101)
10 3v7e_A Ribosome-associated pro 99.1 3.8E-11 1.3E-15 74.5 3.6 43 33-75 2-47 (82)
11 2xzm_U Ribosomal protein L7AE 99.1 9.2E-11 3.1E-15 78.4 4.4 49 26-74 4-60 (126)
12 2jnb_A NHP2-like protein 1; sp 99.0 6.1E-10 2.1E-14 76.3 5.6 51 25-75 33-87 (144)
13 2ale_A SNU13, NHP2/L7AE family 99.0 8.3E-10 2.8E-14 74.4 6.0 50 25-74 15-68 (134)
14 2lbw_A H/ACA ribonucleoprotein 98.9 1.2E-09 4.2E-14 71.7 5.4 49 26-74 4-56 (121)
15 2fc3_A 50S ribosomal protein L 98.8 3.9E-09 1.3E-13 69.3 5.4 49 26-74 12-64 (124)
16 2aif_A Ribosomal protein L7A; 98.8 3.6E-09 1.2E-13 70.9 5.1 50 25-74 24-77 (135)
17 1vq8_F 50S ribosomal protein L 98.8 4.4E-09 1.5E-13 68.6 5.2 49 26-74 13-65 (120)
18 1rlg_A 50S ribosomal protein L 98.8 4.7E-09 1.6E-13 68.4 4.6 49 26-74 11-63 (119)
19 3o85_A Ribosomal protein L7AE; 98.8 9.3E-09 3.2E-13 68.0 5.3 50 25-74 14-67 (122)
20 3u5c_M 40S ribosomal protein S 98.5 7.3E-08 2.5E-12 66.5 2.8 47 27-73 21-75 (143)
21 1xbi_A 50S ribosomal protein L 98.3 7.1E-07 2.4E-11 58.4 4.8 47 28-74 14-65 (120)
22 2zkr_f 60S ribosomal protein L 97.2 0.00011 3.7E-09 55.2 1.5 35 39-73 132-170 (266)
23 2kg4_A Growth arrest and DNA-d 96.6 0.0029 1E-07 44.5 5.0 39 28-66 21-64 (165)
24 3jyw_G 60S ribosomal protein L 96.2 0.0028 9.6E-08 41.7 2.8 32 40-71 23-58 (113)
25 3izc_H 60S ribosomal protein R 95.7 0.009 3.1E-07 44.6 3.9 26 43-68 132-160 (256)
26 4a17_F RPL7A, 60S ribosomal pr 91.8 0.16 5.6E-06 37.9 3.9 28 43-70 125-156 (255)
27 2bjq_A MFP2A; motility, nemato 89.3 0.0087 3E-07 46.6 -5.1 42 5-47 6-47 (345)
28 3ir9_A Peptide chain release f 81.2 2 6.8E-05 29.2 4.1 27 39-65 43-72 (166)
29 3cg6_A Growth arrest and DNA-d 79.7 3.3 0.00011 28.6 4.8 40 27-66 6-54 (146)
30 3ffm_A Growth arrest and DNA-d 73.0 8.2 0.00028 27.2 5.5 39 27-65 27-74 (167)
31 3iz5_H 60S ribosomal protein L 66.6 4.7 0.00016 30.2 3.2 26 43-68 128-156 (258)
32 2pr7_A Haloacid dehalogenase/e 61.4 8.2 0.00028 22.2 3.0 24 46-69 22-48 (137)
33 1x52_A Pelota homolog, CGI-17; 55.5 15 0.00053 23.6 3.9 26 38-63 34-62 (124)
34 2p9j_A Hypothetical protein AQ 49.9 14 0.00049 22.4 2.9 25 47-71 41-68 (162)
35 2wm8_A MDP-1, magnesium-depend 47.0 15 0.00051 23.1 2.7 29 42-70 68-100 (187)
36 3ib6_A Uncharacterized protein 43.3 23 0.00077 22.3 3.1 25 42-66 34-61 (189)
37 2o2x_A Hypothetical protein; s 43.2 12 0.00041 24.1 1.8 26 41-66 55-83 (218)
38 3fk8_A Disulphide isomerase; A 38.9 37 0.0013 19.7 3.5 21 25-45 13-33 (133)
39 3l8h_A Putative haloacid dehal 37.1 29 0.00099 21.2 2.8 25 42-66 27-54 (179)
40 3kbb_A Phosphorylated carbohyd 37.0 24 0.00083 21.8 2.5 32 39-70 81-115 (216)
41 3obw_A Protein pelota homolog; 36.4 30 0.001 25.9 3.4 27 39-65 282-311 (364)
42 1k1e_A Deoxy-D-mannose-octulos 33.4 41 0.0014 21.0 3.2 26 46-71 39-67 (180)
43 3l5k_A Protein GS1, haloacid d 33.0 81 0.0028 19.8 4.6 34 37-70 107-143 (250)
44 3e58_A Putative beta-phosphogl 32.5 36 0.0012 20.3 2.7 30 42-71 89-121 (214)
45 2vgn_A DOM34; translation term 31.8 77 0.0026 23.7 4.9 26 39-64 294-322 (386)
46 3mca_B Protein DOM34, elongati 31.4 54 0.0019 24.7 4.1 26 39-64 288-316 (390)
47 2gmw_A D,D-heptose 1,7-bisphos 31.0 32 0.0011 22.2 2.4 25 41-65 49-76 (211)
48 3j15_A Protein pelota; ribosom 30.3 60 0.0021 24.0 4.1 25 39-63 277-304 (357)
49 3umb_A Dehalogenase-like hydro 29.0 87 0.003 19.2 4.1 36 34-69 91-129 (233)
50 3oby_A Protein pelota homolog; 28.7 67 0.0023 24.0 4.1 27 38-64 261-290 (352)
51 2fea_A 2-hydroxy-3-keto-5-meth 28.2 27 0.00091 22.5 1.6 32 38-69 73-107 (236)
52 2fpr_A Histidine biosynthesis 28.1 28 0.00095 22.0 1.7 23 42-64 42-67 (176)
53 2p11_A Hypothetical protein; p 27.6 44 0.0015 21.2 2.6 32 39-70 93-126 (231)
54 2gfh_A Haloacid dehalogenase-l 27.2 39 0.0013 22.3 2.4 28 42-69 121-150 (260)
55 2pib_A Phosphorylated carbohyd 27.1 1E+02 0.0035 18.2 4.2 38 33-70 74-115 (216)
56 1nnl_A L-3-phosphoserine phosp 26.8 26 0.0009 21.9 1.4 29 41-69 85-116 (225)
57 3s6j_A Hydrolase, haloacid deh 26.6 88 0.003 19.0 3.8 32 40-71 89-123 (233)
58 3um9_A Haloacid dehalogenase, 26.3 82 0.0028 19.2 3.6 33 38-70 92-127 (230)
59 3m9l_A Hydrolase, haloacid deh 26.2 48 0.0016 20.3 2.5 31 40-70 68-101 (205)
60 3smv_A S-(-)-azetidine-2-carbo 25.9 98 0.0033 18.7 3.9 32 39-70 96-129 (240)
61 2no4_A (S)-2-haloacid dehaloge 25.7 1.2E+02 0.0041 18.9 4.4 31 39-69 102-135 (240)
62 3a1c_A Probable copper-exporti 25.7 46 0.0016 22.5 2.5 29 42-70 163-194 (287)
63 1zrn_A L-2-haloacid dehalogena 25.0 56 0.0019 20.2 2.7 29 41-69 94-125 (232)
64 2nyv_A Pgpase, PGP, phosphogly 24.9 51 0.0018 20.8 2.5 27 41-67 82-111 (222)
65 3ph9_A Anterior gradient prote 24.7 55 0.0019 21.0 2.7 18 28-45 31-48 (151)
66 4ex6_A ALNB; modified rossman 23.7 57 0.0019 20.2 2.5 32 39-70 101-135 (237)
67 1yns_A E-1 enzyme; hydrolase f 23.1 58 0.002 21.7 2.6 29 42-70 130-161 (261)
68 3nvb_A Uncharacterized protein 23.1 44 0.0015 25.4 2.2 27 45-71 259-288 (387)
69 3e20_C Eukaryotic peptide chai 22.8 68 0.0023 24.6 3.3 27 39-65 302-331 (441)
70 3fvv_A Uncharacterized protein 22.8 61 0.0021 20.2 2.6 26 42-67 92-120 (232)
71 3dv9_A Beta-phosphoglucomutase 22.7 59 0.002 20.1 2.5 30 41-70 107-139 (247)
72 3e8m_A Acylneuraminate cytidyl 22.7 67 0.0023 19.3 2.7 22 50-71 39-63 (164)
73 2hoq_A Putative HAD-hydrolase 22.5 65 0.0022 20.3 2.7 27 41-67 93-122 (241)
74 2b0c_A Putative phosphatase; a 22.5 61 0.0021 19.6 2.4 26 43-68 92-120 (206)
75 3kd3_A Phosphoserine phosphohy 21.9 38 0.0013 20.3 1.4 29 42-70 82-113 (219)
76 3f9u_A Putative exported cytoc 21.6 79 0.0027 19.3 2.9 19 27-45 33-51 (172)
77 4eek_A Beta-phosphoglucomutase 21.4 1.4E+02 0.0048 18.8 4.1 32 39-70 107-141 (259)
78 1dt9_A ERF1, protein (eukaryot 21.2 1.5E+02 0.005 22.2 4.8 26 40-65 298-326 (437)
79 2zg6_A Putative uncharacterize 21.2 63 0.0022 20.2 2.4 28 42-70 95-125 (220)
80 2i7d_A 5'(3')-deoxyribonucleot 20.9 62 0.0021 20.1 2.3 29 41-69 72-104 (193)
81 1sen_A Thioredoxin-like protei 20.5 83 0.0028 19.6 2.9 18 28-45 33-50 (164)
82 1sfu_A 34L protein; protein/Z- 20.1 52 0.0018 20.1 1.7 29 16-44 32-60 (75)
No 1
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=99.64 E-value=1.2e-16 Score=105.35 Aligned_cols=56 Identities=66% Similarity=1.022 Sum_probs=53.4
Q ss_pred hhhhhhhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081 20 GVLEKKTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY 75 (75)
Q Consensus 20 ~k~~k~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY 75 (75)
.||.|+++++|++.|++|+|+||+++|+++|+|+|+. ||||||+||||..+++|+|
T Consensus 4 ~~~~~~~~~~i~~~L~la~kagk~~~G~~~t~kai~~gkakLVilA~D~~~~~~~~i~~ 62 (112)
T 3iz5_f 4 TKKAKKSGENINNKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPPLRKSEIET 62 (112)
T ss_dssp TBSCCCGGGHHHHHHHHHHTTCEEEESHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHH
Confidence 6788899999999999999999999999999999999 9999999999999999874
No 2
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=99.52 E-value=3.9e-15 Score=99.44 Aligned_cols=56 Identities=63% Similarity=1.009 Sum_probs=49.3
Q ss_pred hhhhhhhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081 20 GVLEKKTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY 75 (75)
Q Consensus 20 ~k~~k~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY 75 (75)
.||.|++.++|.+.|++|+|+||++.|+++|+|+|+. +|||||+||||+++++|+|
T Consensus 5 ~~~~~~~~~~i~~~L~lA~kaGklv~G~~~v~kaIr~gkakLVIiA~Das~~~~~ki~~ 63 (125)
T 3vi6_A 5 AKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEY 63 (125)
T ss_dssp -----CCSSCSHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEECTTSCHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHhCCeeeCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHH
Confidence 5778889999999999999999999999999999999 9999999999999999864
No 3
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.45 E-value=6.9e-14 Score=88.78 Aligned_cols=48 Identities=33% Similarity=0.493 Sum_probs=45.6
Q ss_pred HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081 28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY 75 (75)
Q Consensus 28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY 75 (75)
+||++.|++++|+|+++.|+++|+|+|+. +|||+|+|||++.+++|++
T Consensus 1 ~di~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~ 51 (99)
T 3j21_Z 1 MDLAFELRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYY 51 (99)
T ss_dssp CHHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEECCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCEeECHHHHHHHHHcCCccEEEEeCCCCHHHHHHHHH
Confidence 58999999999999999999999999999 9999999999999998863
No 4
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=99.45 E-value=5.1e-14 Score=90.73 Aligned_cols=51 Identities=67% Similarity=1.077 Sum_probs=45.5
Q ss_pred hhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081 25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY 75 (75)
Q Consensus 25 ~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY 75 (75)
+..++|.+.|++++|+|+++.|+++|+|+|+. +|||+|+||||+.+++|+|
T Consensus 5 k~~~~i~~~L~la~kagk~v~G~~~v~kai~~gkaklVilA~D~~~~~~~~i~~ 58 (105)
T 3u5e_c 5 KSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEY 58 (105)
T ss_dssp ----CHHHHHHHHHTTSEEEESHHHHHHHHHTTCCSEEEECTTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHH
Confidence 67899999999999999999999999999999 9999999999999999874
No 5
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=99.43 E-value=1.2e-13 Score=88.73 Aligned_cols=53 Identities=57% Similarity=0.999 Sum_probs=46.2
Q ss_pred hhhhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081 23 EKKTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY 75 (75)
Q Consensus 23 ~k~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY 75 (75)
+|+..++|.+.|++++|+|+++.|+++|+|+|+. +|||+|+||||..+++|+|
T Consensus 3 ~~k~~~~i~~~L~la~kagklv~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~ 58 (104)
T 4a18_G 3 KKVTQDNIQSKLALVMRSGKATLGYKSTIKAIRNGTAKLVFISNNCPTVRKSEIEY 58 (104)
T ss_dssp -----CHHHHHHHHHHHHSEEEESHHHHHHHHHHTCCCEEEECTTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCCEeECHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHH
Confidence 4667899999999999999999999999999999 9999999999999998864
No 6
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=99.31 E-value=1.5e-12 Score=84.29 Aligned_cols=52 Identities=23% Similarity=0.526 Sum_probs=45.8
Q ss_pred hhhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081 24 KKTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY 75 (75)
Q Consensus 24 k~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY 75 (75)
|+..+++.+.|++|.|+|+++.|+++++++|+. +|||+|+|||++.+++|++
T Consensus 3 ~k~~~~i~~~L~la~kagkl~~G~~~v~kai~~gka~lViiA~D~~~~~~~~l~~ 57 (110)
T 3cpq_A 3 RRENMDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKY 57 (110)
T ss_dssp ----CHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEECTTCBHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCeeeCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHH
Confidence 455789999999999999999999999999998 9999999999999988753
No 7
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=99.30 E-value=1.6e-12 Score=82.59 Aligned_cols=47 Identities=28% Similarity=0.398 Sum_probs=45.1
Q ss_pred HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhc
Q 037081 28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIE 74 (75)
Q Consensus 28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIE 74 (75)
++|++.|++++|+|+++.|+++++|+|++ +|||+|+|||++.+++|+
T Consensus 2 ~~i~~~L~la~kagkl~~G~~~v~kai~~gka~lViiA~D~~~~~~~~l~ 51 (101)
T 1w41_A 2 VDFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIE 51 (101)
T ss_dssp CCHHHHHHHHHHHSEEEESHHHHHHHHHHTCCSEEEEETTSCHHHHHHHH
T ss_pred chHHHHHHHHHHcCCEeECHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHH
Confidence 68999999999999999999999999999 999999999999998875
No 8
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=99.20 E-value=1.4e-11 Score=78.68 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=44.4
Q ss_pred HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081 28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY 75 (75)
Q Consensus 28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY 75 (75)
+.+.+.|.+++|+||++.|+++|+++|+. +|||+|+||||..+++|+|
T Consensus 5 ~ki~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~ 55 (101)
T 3v7q_A 5 MEWFPLLGLANRARKVVSGEDLVIKEIRNARAKLVLLTEDASSNTAKKVTD 55 (101)
T ss_dssp CTHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHHH
T ss_pred chhHHHhhhhhhhhhcccchhhhHHHHhcCceeEEEEeccccccchhhhcc
Confidence 45788999999999999999999999999 9999999999999998853
No 9
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=99.20 E-value=1.2e-11 Score=78.57 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=44.0
Q ss_pred HhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhc
Q 037081 28 ESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIE 74 (75)
Q Consensus 28 ~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIE 74 (75)
+.+.+.|.+++|+|+++.|+++|+|+|+. +|||+|+||||+.+++|+
T Consensus 4 ~ki~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~ 53 (101)
T 3on1_A 4 AKWLSLLGLAARARQLLTGEEQVVKAVQNGQVTLVILSSDAGIHTKKKLL 53 (101)
T ss_dssp CHHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCEeECHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHH
Confidence 45788999999999999999999999998 999999999999998875
No 10
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=99.12 E-value=3.8e-11 Score=74.45 Aligned_cols=43 Identities=16% Similarity=0.376 Sum_probs=39.3
Q ss_pred HHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhhhhhcC
Q 037081 33 RLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKSEIEY 75 (75)
Q Consensus 33 ~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~eIEY 75 (75)
+|..++++||++.|+++|+|+|++ +|||||+||||+.+++|++
T Consensus 2 s~~~~~kagk~~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~ 47 (82)
T 3v7e_A 2 SYDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPILTSSVVS 47 (82)
T ss_dssp CHHHHHHCSEEEESHHHHHHHHTTTCEEEEEEETTSCHHHHHHHHH
T ss_pred cHHHHHHcCCeeEcHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHH
Confidence 367789999999999999999999 9999999999999988753
No 11
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=99.08 E-value=9.2e-11 Score=78.42 Aligned_cols=49 Identities=18% Similarity=0.359 Sum_probs=45.1
Q ss_pred hHHhHHHHHHHHHHh----cceEeehHHHHHHHhh---ceeeeeCCC-Chhhhhhhc
Q 037081 26 THESINNRLALVMKS----GKYTLGYKAAIRSLRR---NLIILSSNC-PPLRKSEIE 74 (75)
Q Consensus 26 ~~~~i~~~L~la~KT----GK~~LG~KqTlK~l~~---KLVIiA~Nc-P~~~K~eIE 74 (75)
++++|+.+|+.++++ |+++.|.++|+|+|+. +|||||+|| |++.+..|+
T Consensus 4 ~~~~i~~~l~~~L~~A~~~gkl~~G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~ 60 (126)
T 2xzm_U 4 QNQQLNEVLAKVIKSSNCQDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVK 60 (126)
T ss_dssp CTHHHHHHHHHHHTTTTSSSCEEESHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCEeecHHHHHHHHHcCCceEEEEeCCCChHHHHHHHH
Confidence 458999999999999 9999999999999999 999999999 788888775
No 12
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=98.99 E-value=6.1e-10 Score=76.28 Aligned_cols=51 Identities=14% Similarity=0.265 Sum_probs=45.1
Q ss_pred hhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChh-hhhhhcC
Q 037081 25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPL-RKSEIEY 75 (75)
Q Consensus 25 ~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~-~K~eIEY 75 (75)
+....+...|++|+++|+++.|+++++|+|+. ||||||+||||. .+.+|++
T Consensus 33 ~l~~ki~~~L~lA~kagkl~~G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~ 87 (144)
T 2jnb_A 33 HLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPL 87 (144)
T ss_dssp HHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCS
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHH
Confidence 34467788899999999999999999999999 999999999995 8888764
No 13
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=98.98 E-value=8.3e-10 Score=74.41 Aligned_cols=50 Identities=18% Similarity=0.358 Sum_probs=43.9
Q ss_pred hhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChh-hhhhhc
Q 037081 25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPL-RKSEIE 74 (75)
Q Consensus 25 ~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~-~K~eIE 74 (75)
+....+.+.|++|+++|+++.|.++++|+|+. +|||||+||+|. .+.+|+
T Consensus 15 ~~~~ki~~~L~lA~k~gkl~~G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~ 68 (134)
T 2ale_A 15 ALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLP 68 (134)
T ss_dssp HHHHHHHHHHHHHHHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccCchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHH
Confidence 34456778899999999999999999999999 999999999995 777764
No 14
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=98.94 E-value=1.2e-09 Score=71.73 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=43.3
Q ss_pred hHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChh-hhhhhc
Q 037081 26 THESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPL-RKSEIE 74 (75)
Q Consensus 26 ~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~-~K~eIE 74 (75)
....|.+.|++|+++|+++.|.++++|+|+. +|||||+||||. ++..|+
T Consensus 4 l~~ki~~~L~~a~k~gkl~~G~~~v~kai~~gkakLViiA~D~~~~~~~~~l~ 56 (121)
T 2lbw_A 4 LNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIP 56 (121)
T ss_dssp HHHHHHHHHHHHHTTTCEEESHHHHHHHHHHSCCCEEEECTTCSCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHH
Confidence 3456888999999999999999999999999 999999999995 577654
No 15
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=98.85 E-value=3.9e-09 Score=69.31 Aligned_cols=49 Identities=12% Similarity=0.283 Sum_probs=43.1
Q ss_pred hHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCCh-hhhhhhc
Q 037081 26 THESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPP-LRKSEIE 74 (75)
Q Consensus 26 ~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~-~~K~eIE 74 (75)
..+.+.+.|+++.++|+++.|+++++|+|+. +|||+|+||+| ++++.|+
T Consensus 12 l~~~i~~~L~lA~kagkl~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~ 64 (124)
T 2fc3_A 12 LAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLP 64 (124)
T ss_dssp HHHHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHH
T ss_pred HHHHHHHHHHHHHHhCCccCCHHHHHHHHHcCCceEEEEcCCCChHHHHHHHH
Confidence 4467889999999999999999999999999 99999999966 5676654
No 16
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=98.84 E-value=3.6e-09 Score=70.86 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=43.6
Q ss_pred hhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhh-hhhc
Q 037081 25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRK-SEIE 74 (75)
Q Consensus 25 ~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K-~eIE 74 (75)
+....+.+.|+++.++|+++.|+++++|+|+. +|||+|+||+|..+ +.|+
T Consensus 24 ~l~~ki~~~L~lA~kagklv~G~~~v~kal~~gkaklViiA~D~~~~~~~~~l~ 77 (135)
T 2aif_A 24 DLNNKIINLVQQACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLP 77 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccCHHHHHHHHHcCCCeEEEEecCCChHHHHhHHH
Confidence 33466899999999999999999999999998 99999999999843 6553
No 17
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=98.83 E-value=4.4e-09 Score=68.61 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=43.0
Q ss_pred hHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCCh-hhhhhhc
Q 037081 26 THESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPP-LRKSEIE 74 (75)
Q Consensus 26 ~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~-~~K~eIE 74 (75)
..+.+.+.|+++.++|+++.|+++++|+|+. +|||+|+||+| ++++.|+
T Consensus 13 l~~~i~~~L~~A~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~ 65 (120)
T 1vq8_F 13 LEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIP 65 (120)
T ss_dssp HHHHHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHH
T ss_pred HHHHHHHHHHHHHHcCCEeECHHHHHHHHHcCCceEEEEeCCCChHHHHHHHH
Confidence 3466889999999999999999999999999 99999999977 4676654
No 18
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=98.81 E-value=4.7e-09 Score=68.38 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=42.9
Q ss_pred hHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChh-hhhhhc
Q 037081 26 THESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPL-RKSEIE 74 (75)
Q Consensus 26 ~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~-~K~eIE 74 (75)
..+.+.+.|+++.++|+++.|+++++|+|+. +|||+|+||+|. ++..|+
T Consensus 11 l~~~i~~~L~lA~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~ 63 (119)
T 1rlg_A 11 MQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLP 63 (119)
T ss_dssp HHHHHHHHHHHHHHHSEEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHH
T ss_pred HHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCCcEEEEeCCCChHHHHHHHH
Confidence 3467889999999999999999999999998 999999999774 566654
No 19
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=98.77 E-value=9.3e-09 Score=67.99 Aligned_cols=50 Identities=14% Similarity=0.227 Sum_probs=43.4
Q ss_pred hhHHhHHHHHHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChh-hhhhhc
Q 037081 25 KTHESINNRLALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPL-RKSEIE 74 (75)
Q Consensus 25 ~~~~~i~~~L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~-~K~eIE 74 (75)
.....+-+-|++++++|+++.|+++++|+|+. +|||+|+||+|. +++.|+
T Consensus 14 ~l~~kil~~L~lA~kagklv~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~ 67 (122)
T 3o85_A 14 ELSLELLNLVKHGASLQAIKRGANEALKQVNRGKAELVIIAADADPIEIVLHLP 67 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTCSSGGGGTTHH
T ss_pred HHHHHHHHHHHHHHHhCCEeEcHHHHHHHHHcCCceEEEEeCCCChHHHHHHHH
Confidence 44566888999999999999999999999999 999999999775 566653
No 20
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=98.46 E-value=7.3e-08 Score=66.50 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=40.4
Q ss_pred HHhHHHHHHHHHHh----cceEeehHHHHHHHhh---ceeeeeCCC-Chhhhhhh
Q 037081 27 HESINNRLALVMKS----GKYTLGYKAAIRSLRR---NLIILSSNC-PPLRKSEI 73 (75)
Q Consensus 27 ~~~i~~~L~la~KT----GK~~LG~KqTlK~l~~---KLVIiA~Nc-P~~~K~eI 73 (75)
.+|++.+|+.++++ |++..|.++|.|+|+. +|||||+|| |+.....|
T Consensus 21 ~md~~~aL~~vLk~A~~~g~l~~G~~et~Kal~kg~a~LvvLA~D~~~~~i~k~i 75 (143)
T 3u5c_M 21 EVTIEDALKVVLRTALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLV 75 (143)
T ss_dssp CSCSSHHHHHHHHHHHHTTCEEESHHHHHHHHSSTTCSCEECCSCCSTTHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCEeEcHHHHHHHHhcCceeEEEEeCCCCHHHHHHHH
Confidence 46778887777777 9999999999999988 999999999 57777665
No 21
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=98.32 E-value=7.1e-07 Score=58.40 Aligned_cols=47 Identities=19% Similarity=0.344 Sum_probs=35.5
Q ss_pred HhHHHHHHHHHH-hcceEeehHHHHHHHhh---ceeeeeCCCChh-hhhhhc
Q 037081 28 ESINNRLALVMK-SGKYTLGYKAAIRSLRR---NLIILSSNCPPL-RKSEIE 74 (75)
Q Consensus 28 ~~i~~~L~la~K-TGK~~LG~KqTlK~l~~---KLVIiA~NcP~~-~K~eIE 74 (75)
++++.++...++ .|+++.|+++++|+|+. +|||||+||+|. ++..|+
T Consensus 14 ~~l~~k~~~ll~~Agkl~~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~ 65 (120)
T 1xbi_A 14 EEIQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLP 65 (120)
T ss_dssp HHHHHHHHHHHHTCSEEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHH
T ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHcCCceEEEEcCCCChHHHHHHHH
Confidence 444444433332 39999999999999999 999999999774 676654
No 22
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=97.18 E-value=0.00011 Score=55.15 Aligned_cols=35 Identities=9% Similarity=0.191 Sum_probs=29.8
Q ss_pred HhcceEeehHHHHHHHhh---ceeeeeCCCCh-hhhhhh
Q 037081 39 KSGKYTLGYKAAIRSLRR---NLIILSSNCPP-LRKSEI 73 (75)
Q Consensus 39 KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~-~~K~eI 73 (75)
+.|++..|.++|+++|+. +|||||+||+| +++..|
T Consensus 132 ~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~ei~~~L 170 (266)
T 2zkr_f 132 RPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFL 170 (266)
T ss_dssp SCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSSTTTTHH
T ss_pred CCCeeeeChHHHHHHHHhCCceEEEEecCCCHHHHHHHH
Confidence 468999999999999999 99999999965 555443
No 23
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=96.63 E-value=0.0029 Score=44.49 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=31.0
Q ss_pred HhHHHHHHHHHHhcceEeehHHHHHHH--hh---ceeeeeCCCC
Q 037081 28 ESINNRLALVMKSGKYTLGYKAAIRSL--RR---NLIILSSNCP 66 (75)
Q Consensus 28 ~~i~~~L~la~KTGK~~LG~KqTlK~l--~~---KLVIiA~NcP 66 (75)
..+..-|+.|...++++.|.++|.|+| .. ++||||.||.
T Consensus 21 ~al~evLk~A~~~~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d 64 (165)
T 2kg4_A 21 DALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADED 64 (165)
T ss_dssp HHHHHHHHHHHHHTCEEECGGGHHHHHHHCTTTEEEEEEECCTG
T ss_pred HHHHHHHHHHHHcCCeeecHHHHHHHHhcCCCcEEEEEEeCCCC
Confidence 334444555666899999999999999 43 9999999993
No 24
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=96.22 E-value=0.0028 Score=41.69 Aligned_cols=32 Identities=9% Similarity=0.236 Sum_probs=26.5
Q ss_pred hcceEeehHHHHHHHhh---ceeeeeCCCCh-hhhh
Q 037081 40 SGKYTLGYKAAIRSLRR---NLIILSSNCPP-LRKS 71 (75)
Q Consensus 40 TGK~~LG~KqTlK~l~~---KLVIiA~NcP~-~~K~ 71 (75)
...+..|.+++.|+|++ +|||||+||.| ++..
T Consensus 23 ~~~l~~G~~~v~kaI~~gka~LVvIA~D~~p~~i~~ 58 (113)
T 3jyw_G 23 PYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVV 58 (113)
T ss_dssp SSCEEESHHHHHHTTTTTCCSEEEECSCCSSHHHHT
T ss_pred CchhhchHHHHHHHHHcCCceEEEEeCCCCHHHHHH
Confidence 34577899999999999 99999999955 5544
No 25
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=95.73 E-value=0.009 Score=44.63 Aligned_cols=26 Identities=12% Similarity=0.475 Sum_probs=23.5
Q ss_pred eEeehHHHHHHHhh---ceeeeeCCCChh
Q 037081 43 YTLGYKAAIRSLRR---NLIILSSNCPPL 68 (75)
Q Consensus 43 ~~LG~KqTlK~l~~---KLVIiA~NcP~~ 68 (75)
+.-|.++|+++|++ +|||||+||+|.
T Consensus 132 lk~G~keV~KaIekgKAkLVVIA~DadP~ 160 (256)
T 3izc_H 132 VKYGLNHVVALIENKKAKLVLIANDVDPI 160 (256)
T ss_dssp EEESHHHHHHHHHHTCCSEEEEESCCSSG
T ss_pred hhccHHHHHHHHHhCcceEEEEeCCCChH
Confidence 45699999999999 999999999775
No 26
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=91.78 E-value=0.16 Score=37.88 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=23.8
Q ss_pred eEeehHHHHHHHhh---ceeeeeCCC-Chhhh
Q 037081 43 YTLGYKAAIRSLRR---NLIILSSNC-PPLRK 70 (75)
Q Consensus 43 ~~LG~KqTlK~l~~---KLVIiA~Nc-P~~~K 70 (75)
+.-|.+.+.++|++ +|||||+|| |.+..
T Consensus 125 lk~GvneVtKaIekgKAqLVVIA~DvdPielv 156 (255)
T 4a17_F 125 LKYGLNHITTLIENKQAKLVVIAHDVDPIELV 156 (255)
T ss_dssp EEECHHHHHHHHHTSCCSEEEEESCCSSTHHH
T ss_pred eecchHHHHHHHHcCCceEEEEeCCCChHHHH
Confidence 45699999999999 999999999 55544
No 27
>2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum} SCOP: b.169.1.1 b.169.1.1
Probab=89.29 E-value=0.0087 Score=46.56 Aligned_cols=42 Identities=21% Similarity=0.110 Sum_probs=35.9
Q ss_pred cccceecccccceehhhhhhhhHHhHHHHHHHHHHhcceEeeh
Q 037081 5 RRGTFVEARHGGYWLGVLEKKTHESINNRLALVMKSGKYTLGY 47 (75)
Q Consensus 5 ~~~~~~~~~~~~~~~~k~~k~~~~~i~~~L~la~KTGK~~LG~ 47 (75)
-.-+|..-+-|+=|++ +.++..+++|..|.+++|+||+++|-
T Consensus 6 ~eD~Wad~~~g~pfp~-k~vk~~~~~N~yvALwyKsGk~vlGR 47 (345)
T 2bjq_A 6 FEDTWAYNTIGSPFPD-NPVRVKGQQNMYVALWYKFGKPIHGR 47 (345)
T ss_dssp CCCEEEEEETTSCCCS-SBCBCTTCSSCEEEEEEETTEEEEEE
T ss_pred cccchhhccccCcccc-ccccCCCccceEEEEEEEcCcEEEee
Confidence 3457999999999999 45556788999999999999999993
No 28
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=81.22 E-value=2 Score=29.15 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=22.4
Q ss_pred HhcceEeehHHHHHHHhh---ceeeeeCCC
Q 037081 39 KSGKYTLGYKAAIRSLRR---NLIILSSNC 65 (75)
Q Consensus 39 KTGK~~LG~KqTlK~l~~---KLVIiA~Nc 65 (75)
++|+++.|.+.|++++.. ..+||+.|.
T Consensus 43 d~g~~~yG~~ev~~Ale~GAVetLlv~e~l 72 (166)
T 3ir9_A 43 DSGKVAYGESQVRANLEINSVDVLLLSEDL 72 (166)
T ss_dssp CTTCEEESHHHHHHHHTTTCEEEEEEETTC
T ss_pred CCCcEEEcHHHHHHHHHhCCceEEEEecCc
Confidence 589999999999999998 666666554
No 29
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=79.69 E-value=3.3 Score=28.58 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=33.2
Q ss_pred HHhHHHHHHHHHH----hcceEeehHHHHHHHhh-----ceeeeeCCCC
Q 037081 27 HESINNRLALVMK----SGKYTLGYKAAIRSLRR-----NLIILSSNCP 66 (75)
Q Consensus 27 ~~~i~~~L~la~K----TGK~~LG~KqTlK~l~~-----KLVIiA~NcP 66 (75)
+++++.+|+.|++ .+-++.|-..+.|+|-. -|-++|.||.
T Consensus 6 m~~v~~ALqeVLk~Al~~dgL~~Gl~EaaKaLdk~p~~a~lCvLA~dcd 54 (146)
T 3cg6_A 6 MQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAADEE 54 (146)
T ss_dssp CSCHHHHHHHHHHHHHHHTCEEESHHHHHHHHHHCGGGEEEEEEECCTG
T ss_pred hcCHHHHHHHHHHHHHHhCCccccHHHHHHHHhcCCCeEEEEEecCCCc
Confidence 3477777776665 68899999999999987 5999999997
No 30
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=72.99 E-value=8.2 Score=27.20 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=31.4
Q ss_pred HHhHHHHHHHHHH----hcceEeehHHHHHHHhh-----ceeeeeCCC
Q 037081 27 HESINNRLALVMK----SGKYTLGYKAAIRSLRR-----NLIILSSNC 65 (75)
Q Consensus 27 ~~~i~~~L~la~K----TGK~~LG~KqTlK~l~~-----KLVIiA~Nc 65 (75)
+..++.+|+.|++ -+-++.|-..+.|+|-. .|-++|.||
T Consensus 27 m~~v~~ALqeVLk~Al~~dgL~~Gl~EaaKaLd~~p~~a~LCvLA~dc 74 (167)
T 3ffm_A 27 MQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAAGE 74 (167)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHHCGGGEEEEEEECCG
T ss_pred hhhHHHHHHHHHHHHHHhCCccccHHHHHHHhccCCCeEEEEEEeCCC
Confidence 4456777666665 58899999999999954 799999998
No 31
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=66.60 E-value=4.7 Score=30.16 Aligned_cols=26 Identities=12% Similarity=0.416 Sum_probs=22.9
Q ss_pred eEeehHHHHHHHhh---ceeeeeCCCChh
Q 037081 43 YTLGYKAAIRSLRR---NLIILSSNCPPL 68 (75)
Q Consensus 43 ~~LG~KqTlK~l~~---KLVIiA~NcP~~ 68 (75)
+.-|-+.+.++|.+ +|||||.+|-|.
T Consensus 128 lk~GvneVTklVE~kKAqLVVIA~DVdPi 156 (258)
T 3iz5_H 128 VKYGLNHVTYLIEQSKAQLVVIAHDVDPI 156 (258)
T ss_dssp EEESHHHHHHHHHTTCEEEEEEESCCSST
T ss_pred eecccHHHHHHHHcCcceEEEEeCCCChH
Confidence 45699999999999 999999999664
No 32
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=61.43 E-value=8.2 Score=22.17 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=15.8
Q ss_pred ehHHHHHHHhh---ceeeeeCCCChhh
Q 037081 46 GYKAAIRSLRR---NLIILSSNCPPLR 69 (75)
Q Consensus 46 G~KqTlK~l~~---KLVIiA~NcP~~~ 69 (75)
|..++++.|+. +++|++++.+...
T Consensus 22 ~~~~~l~~L~~~G~~~~i~S~~~~~~~ 48 (137)
T 2pr7_A 22 RWRNLLAAAKKNGVGTVILSNDPGGLG 48 (137)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSCCGGG
T ss_pred cHHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence 56677888877 6666666655543
No 33
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=55.55 E-value=15 Score=23.59 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=20.8
Q ss_pred HHhcceEeehHHHHHHHhh---ceeeeeC
Q 037081 38 MKSGKYTLGYKAAIRSLRR---NLIILSS 63 (75)
Q Consensus 38 ~KTGK~~LG~KqTlK~l~~---KLVIiA~ 63 (75)
-.+|+++.|.+.+.+++.. ..++|+.
T Consensus 34 ~d~g~~~yG~~eV~~Ale~GAVetLLI~d 62 (124)
T 1x52_A 34 HEPDRAFYGLKQVEKANEAMAIDTLLISD 62 (124)
T ss_dssp SCGGGEEESHHHHHHHHHTTCEEEEEEEH
T ss_pred cCCCcEEECHHHHHHHHHcCCccEEEech
Confidence 3579999999999999998 5555544
No 34
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=49.95 E-value=14 Score=22.37 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=18.0
Q ss_pred hHHHHHHHhh---ceeeeeCCCChhhhh
Q 037081 47 YKAAIRSLRR---NLIILSSNCPPLRKS 71 (75)
Q Consensus 47 ~KqTlK~l~~---KLVIiA~NcP~~~K~ 71 (75)
..++|+.|+. +++|++++.++..+.
T Consensus 41 ~~~~l~~l~~~g~~~~i~T~~~~~~~~~ 68 (162)
T 2p9j_A 41 DGIGIKLLQKMGITLAVISGRDSAPLIT 68 (162)
T ss_dssp HHHHHHHHHTTTCEEEEEESCCCHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCCcHHHHH
Confidence 4688888887 777777776665554
No 35
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=47.00 E-value=15 Score=23.07 Aligned_cols=29 Identities=7% Similarity=-0.067 Sum_probs=18.7
Q ss_pred ceEeehHHHHHHHhh---ceeeeeCCC-Chhhh
Q 037081 42 KYTLGYKAAIRSLRR---NLIILSSNC-PPLRK 70 (75)
Q Consensus 42 K~~LG~KqTlK~l~~---KLVIiA~Nc-P~~~K 70 (75)
.+.=|..++|+.|+. +++|++++. ++..+
T Consensus 68 ~~~~g~~e~L~~L~~~G~~v~ivT~~~~~~~~~ 100 (187)
T 2wm8_A 68 RLYPEVPEVLKRLQSLGVPGAAASRTSEIEGAN 100 (187)
T ss_dssp CCCTTHHHHHHHHHHHTCCEEEEECCSCHHHHH
T ss_pred CcchhHHHHHHHHHHCCceEEEEeCCCChHHHH
Confidence 445577888888887 666666655 24443
No 36
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=43.26 E-value=23 Score=22.32 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=16.6
Q ss_pred ceEeehHHHHHHHhh---ceeeeeCCCC
Q 037081 42 KYTLGYKAAIRSLRR---NLIILSSNCP 66 (75)
Q Consensus 42 K~~LG~KqTlK~l~~---KLVIiA~NcP 66 (75)
...=|..++|+.|+. +++|++|+..
T Consensus 34 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~ 61 (189)
T 3ib6_A 34 VLRKNAKETLEKVKQLGFKQAILSNTAT 61 (189)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEEECCSS
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEECCCc
Confidence 455677788888887 5666555543
No 37
>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19
Probab=43.19 E-value=12 Score=24.14 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=19.0
Q ss_pred cceEeehHHHHHHHhh---ceeeeeCCCC
Q 037081 41 GKYTLGYKAAIRSLRR---NLIILSSNCP 66 (75)
Q Consensus 41 GK~~LG~KqTlK~l~~---KLVIiA~NcP 66 (75)
.+..=|..++|+.|+. +++|++||..
T Consensus 55 ~~~~~g~~e~L~~L~~~G~~~~i~Tn~~~ 83 (218)
T 2o2x_A 55 IVLRPQMLPAIATANRAGIPVVVVTNQSG 83 (218)
T ss_dssp CCBCGGGHHHHHHHHHHTCCEEEEEECHH
T ss_pred CeECcCHHHHHHHHHHCCCEEEEEcCcCC
Confidence 5666789999999987 5666665544
No 38
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=38.95 E-value=37 Score=19.72 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=17.2
Q ss_pred hhHHhHHHHHHHHHHhcceEe
Q 037081 25 KTHESINNRLALVMKSGKYTL 45 (75)
Q Consensus 25 ~~~~~i~~~L~la~KTGK~~L 45 (75)
...++++..|..+..+||.++
T Consensus 13 ~~~~~~~~~~~~~~~~~k~vl 33 (133)
T 3fk8_A 13 DAWTQVKKALAAGKRTHKPTL 33 (133)
T ss_dssp CHHHHHHHHHHHHHHHTCCEE
T ss_pred ChHhHHHHHHHHHHhcCCcEE
Confidence 345789999999999999776
No 39
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=37.13 E-value=29 Score=21.17 Aligned_cols=25 Identities=16% Similarity=0.188 Sum_probs=17.4
Q ss_pred ceEeehHHHHHHHhh---ceeeeeCCCC
Q 037081 42 KYTLGYKAAIRSLRR---NLIILSSNCP 66 (75)
Q Consensus 42 K~~LG~KqTlK~l~~---KLVIiA~NcP 66 (75)
+..=|..++|+.|+. +++|++|+.+
T Consensus 27 ~~~~g~~~~l~~L~~~g~~~~i~Tn~~~ 54 (179)
T 3l8h_A 27 IALPGSLQAIARLTQADWTVVLATNQSG 54 (179)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEEEECTT
T ss_pred eECcCHHHHHHHHHHCCCEEEEEECCCc
Confidence 455688889999988 5666665543
No 40
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=37.04 E-value=24 Score=21.82 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=22.4
Q ss_pred HhcceEeehHHHHHHHhh---ceeeeeCCCChhhh
Q 037081 39 KSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRK 70 (75)
Q Consensus 39 KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K 70 (75)
..-+..=|...+++.|+. ++.|++++......
T Consensus 81 ~~~~~~pg~~~~l~~L~~~g~~~~i~tn~~~~~~~ 115 (216)
T 3kbb_A 81 ELLKENPGVREALEFVKSKRIKLALATSTPQREAL 115 (216)
T ss_dssp HHCCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHH
T ss_pred HhcccCccHHHHHHHHHHcCCCcccccCCcHHHHH
Confidence 345667799999999988 77766665554443
No 41
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=36.45 E-value=30 Score=25.93 Aligned_cols=27 Identities=7% Similarity=0.191 Sum_probs=22.1
Q ss_pred HhcceEeehHHHHHHHhh---ceeeeeCCC
Q 037081 39 KSGKYTLGYKAAIRSLRR---NLIILSSNC 65 (75)
Q Consensus 39 KTGK~~LG~KqTlK~l~~---KLVIiA~Nc 65 (75)
.+|+++.|.+.+++++.. .-++|+.+.
T Consensus 282 d~g~a~yG~~eV~~Ale~GAVetLLV~d~l 311 (364)
T 3obw_A 282 QPELVTYGLEQVKNAIEMGAVETVLVIEDL 311 (364)
T ss_dssp SCSSEEESHHHHHHHHHHTCEEEEEEEGGG
T ss_pred CCCcEEECHHHHHHHHHhCCCcEEEEeccC
Confidence 379999999999999999 666666553
No 42
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=33.44 E-value=41 Score=21.04 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=17.6
Q ss_pred ehHHHHHHHhh---ceeeeeCCCChhhhh
Q 037081 46 GYKAAIRSLRR---NLIILSSNCPPLRKS 71 (75)
Q Consensus 46 G~KqTlK~l~~---KLVIiA~NcP~~~K~ 71 (75)
...++|+.|+. +++|++++.++..+.
T Consensus 39 ~~~~~l~~L~~~G~~~~i~Tg~~~~~~~~ 67 (180)
T 1k1e_A 39 RDGLGIKMLMDADIQVAVLSGRDSPILRR 67 (180)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCCHHHHH
T ss_pred chHHHHHHHHHCCCeEEEEeCCCcHHHHH
Confidence 44578888887 777777666655543
No 43
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}
Probab=32.98 E-value=81 Score=19.84 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=23.4
Q ss_pred HHHhcceEeehHHHHHHHhh---ceeeeeCCCChhhh
Q 037081 37 VMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRK 70 (75)
Q Consensus 37 a~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K 70 (75)
.+..-...=|...+++.|+. +++|++++.+....
T Consensus 107 ~~~~~~~~~~~~~~l~~l~~~g~~~~i~sn~~~~~~~ 143 (250)
T 3l5k_A 107 VFPTAALMPGAEKLIIHLRKHGIPFALATSSRSASFD 143 (250)
T ss_dssp HGGGCCBCTTHHHHHHHHHHTTCCEEEECSCCHHHHH
T ss_pred HhccCCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHH
Confidence 33455677789999999998 66666655544443
No 44
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=32.53 E-value=36 Score=20.28 Aligned_cols=30 Identities=7% Similarity=-0.077 Sum_probs=21.6
Q ss_pred ceEeehHHHHHHHhh---ceeeeeCCCChhhhh
Q 037081 42 KYTLGYKAAIRSLRR---NLIILSSNCPPLRKS 71 (75)
Q Consensus 42 K~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~ 71 (75)
...=|....++.++. +++|++++.+...+.
T Consensus 89 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~ 121 (214)
T 3e58_A 89 LIFPDVLKVLNEVKSQGLEIGLASSSVKADIFR 121 (214)
T ss_dssp HBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHH
T ss_pred CcCchHHHHHHHHHHCCCCEEEEeCCcHHHHHH
Confidence 566788899999988 777777665554443
No 45
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=31.78 E-value=77 Score=23.71 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=21.7
Q ss_pred HhcceEeehHHHHHHHhh---ceeeeeCC
Q 037081 39 KSGKYTLGYKAAIRSLRR---NLIILSSN 64 (75)
Q Consensus 39 KTGK~~LG~KqTlK~l~~---KLVIiA~N 64 (75)
.+|+++.|.+.+.+++.. ..++|+.|
T Consensus 294 d~~~a~yG~~eV~~Ale~GAVetLLV~d~ 322 (386)
T 2vgn_A 294 DDDKAWYGEKEVVKAAEYGAISYLLLTDK 322 (386)
T ss_dssp TCSSEEESHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCcEEeCHHHHHHHHHcCCcEEEEEech
Confidence 359999999999999998 66666665
No 46
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=31.43 E-value=54 Score=24.67 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=20.7
Q ss_pred HhcceEeehHHHHHHHhh---ceeeeeCC
Q 037081 39 KSGKYTLGYKAAIRSLRR---NLIILSSN 64 (75)
Q Consensus 39 KTGK~~LG~KqTlK~l~~---KLVIiA~N 64 (75)
.+|+++.|.+.+.+++.. .-++|+.+
T Consensus 288 d~g~a~YG~~eV~~Ale~GAVetLLI~d~ 316 (390)
T 3mca_B 288 DDRKAWYGPNHVLKAFELGAIGELLISDS 316 (390)
T ss_dssp CTTSEEESHHHHHHHHHTTCBSSCEEEET
T ss_pred CCCcEEECHHHHHHHHHcCCCeEEEEecc
Confidence 479999999999999999 44455543
No 47
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=30.99 E-value=32 Score=22.15 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=18.2
Q ss_pred cceEeehHHHHHHHhh---ceeeeeCCC
Q 037081 41 GKYTLGYKAAIRSLRR---NLIILSSNC 65 (75)
Q Consensus 41 GK~~LG~KqTlK~l~~---KLVIiA~Nc 65 (75)
-+..=|..++|+.|+. +++|++|+.
T Consensus 49 ~~~~pg~~e~L~~L~~~G~~~~ivTn~~ 76 (211)
T 2gmw_A 49 FEFIDGVIDAMRELKKMGFALVVVTNQS 76 (211)
T ss_dssp CCBCTTHHHHHHHHHHTTCEEEEEEECT
T ss_pred CcCCcCHHHHHHHHHHCCCeEEEEECcC
Confidence 3566688899999987 666666555
No 48
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=30.28 E-value=60 Score=24.02 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=20.2
Q ss_pred HhcceEeehHHHHHHHhh---ceeeeeC
Q 037081 39 KSGKYTLGYKAAIRSLRR---NLIILSS 63 (75)
Q Consensus 39 KTGK~~LG~KqTlK~l~~---KLVIiA~ 63 (75)
.+|+++.|.+.+.+++.. .-++|+.
T Consensus 277 d~g~a~yG~~eV~~Ale~GAVetLLV~d 304 (357)
T 3j15_A 277 NNGLVAYGLKEVEEAVNYGAVETLLVLD 304 (357)
T ss_dssp STTTEEESTHHHHHHHHHTCEEEEEEEH
T ss_pred CCCcEEeCHHHHHHHHHhCCCcEEEEec
Confidence 479999999999999999 4455553
No 49
>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}
Probab=29.05 E-value=87 Score=19.17 Aligned_cols=36 Identities=25% Similarity=0.162 Sum_probs=24.2
Q ss_pred HHHHHHhcceEeehHHHHHHHhh---ceeeeeCCCChhh
Q 037081 34 LALVMKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLR 69 (75)
Q Consensus 34 L~la~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~ 69 (75)
+......-...=|....++.|+. +++|++++.+...
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~ 129 (233)
T 3umb_A 91 LMREYACLSAFPENVPVLRQLREMGLPLGILSNGNPQML 129 (233)
T ss_dssp HHHHHHSCEECTTHHHHHHHHHTTTCCEEEEESSCHHHH
T ss_pred HHHHHhcCCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHH
Confidence 33334556677889999999988 7777665554443
No 50
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=28.70 E-value=67 Score=23.99 Aligned_cols=27 Identities=7% Similarity=0.246 Sum_probs=21.5
Q ss_pred HHhcceEeehHHHHHHHhh---ceeeeeCC
Q 037081 38 MKSGKYTLGYKAAIRSLRR---NLIILSSN 64 (75)
Q Consensus 38 ~KTGK~~LG~KqTlK~l~~---KLVIiA~N 64 (75)
-+.|+++.|.+.+.+++.. .-++|+.+
T Consensus 261 ~~d~~a~YG~~eV~~Ale~GAVetLLIsd~ 290 (352)
T 3oby_A 261 AKGERVAYGLDEVREAHNYRAIEVLLVADE 290 (352)
T ss_dssp HHTCSEEESHHHHHHHHTTTCEEEEEEEHH
T ss_pred hcCCcEEECHHHHHHHHHcCCceEEEEecc
Confidence 3459999999999999998 55566544
No 51
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20
Probab=28.15 E-value=27 Score=22.49 Aligned_cols=32 Identities=9% Similarity=0.248 Sum_probs=23.0
Q ss_pred HHhcceEeehHHHHHHHhh---ceeeeeCCCChhh
Q 037081 38 MKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLR 69 (75)
Q Consensus 38 ~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~ 69 (75)
...-.+.=|..++|+.|+. +++|++++.....
T Consensus 73 ~~~~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~ 107 (236)
T 2fea_A 73 LEDAKIREGFREFVAFINEHEIPFYVISGGMDFFV 107 (236)
T ss_dssp HHHCCBCTTHHHHHHHHHHHTCCEEEEEEEEHHHH
T ss_pred hcCCCCCccHHHHHHHHHhCCCeEEEEeCCcHHHH
Confidence 3455677799999999987 7777766654433
No 52
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=28.11 E-value=28 Score=21.98 Aligned_cols=23 Identities=13% Similarity=0.450 Sum_probs=15.3
Q ss_pred ceEeehHHHHHHHhh---ceeeeeCC
Q 037081 42 KYTLGYKAAIRSLRR---NLIILSSN 64 (75)
Q Consensus 42 K~~LG~KqTlK~l~~---KLVIiA~N 64 (75)
+..=|..++|+.|+. +++|++|+
T Consensus 42 ~~~pg~~e~L~~L~~~G~~l~i~Tn~ 67 (176)
T 2fpr_A 42 AFEPGVIPQLLKLQKAGYKLVMITNQ 67 (176)
T ss_dssp CBCTTHHHHHHHHHHTTEEEEEEEEC
T ss_pred cCCccHHHHHHHHHHCCCEEEEEECC
Confidence 344477778888876 66666655
No 53
>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}
Probab=27.62 E-value=44 Score=21.20 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=22.1
Q ss_pred HhcceEeehHHHHHHHhh--ceeeeeCCCChhhh
Q 037081 39 KSGKYTLGYKAAIRSLRR--NLIILSSNCPPLRK 70 (75)
Q Consensus 39 KTGK~~LG~KqTlK~l~~--KLVIiA~NcP~~~K 70 (75)
..-...=|..++|+.|+. +++|++|+.....+
T Consensus 93 ~~~~~~~g~~~~l~~l~~~g~~~i~Tn~~~~~~~ 126 (231)
T 2p11_A 93 FASRVYPGALNALRHLGARGPTVILSDGDVVFQP 126 (231)
T ss_dssp GGGGBCTTHHHHHHHHHTTSCEEEEEECCSSHHH
T ss_pred HhCCcCccHHHHHHHHHhCCCEEEEeCCCHHHHH
Confidence 344566799999999988 67766665544443
No 54
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Probab=27.19 E-value=39 Score=22.31 Aligned_cols=28 Identities=21% Similarity=0.301 Sum_probs=19.3
Q ss_pred ceEeehHHHHHHHhh--ceeeeeCCCChhh
Q 037081 42 KYTLGYKAAIRSLRR--NLIILSSNCPPLR 69 (75)
Q Consensus 42 K~~LG~KqTlK~l~~--KLVIiA~NcP~~~ 69 (75)
...=|...+|+.|+. +++|++|+.+...
T Consensus 121 ~~~~g~~~~L~~L~~~~~l~i~Tn~~~~~~ 150 (260)
T 2gfh_A 121 ILADDVKAMLTELRKEVRLLLLTNGDRQTQ 150 (260)
T ss_dssp CCCHHHHHHHHHHHTTSEEEEEECSCHHHH
T ss_pred CCCcCHHHHHHHHHcCCcEEEEECcChHHH
Confidence 555689999999987 6666665544433
No 55
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=27.10 E-value=1e+02 Score=18.23 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=24.1
Q ss_pred HHHHHHHh-cceEeehHHHHHHHhh---ceeeeeCCCChhhh
Q 037081 33 RLALVMKS-GKYTLGYKAAIRSLRR---NLIILSSNCPPLRK 70 (75)
Q Consensus 33 ~L~la~KT-GK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K 70 (75)
.....+.. -...=|..+.++.++. +++|++++.+....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 115 (216)
T 2pib_A 74 EKKRVFSELLKENPGVREALEFVKSKRIKLALATSTPQREAL 115 (216)
T ss_dssp HHHHHHHHHCCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHH
T ss_pred HHHHHHHhcCCcCcCHHHHHHHHHHCCCCEEEEeCCcHHhHH
Confidence 33334444 5677789999999988 66666655444333
No 56
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A
Probab=26.80 E-value=26 Score=21.88 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=20.7
Q ss_pred cceEeehHHHHHHHhh---ceeeeeCCCChhh
Q 037081 41 GKYTLGYKAAIRSLRR---NLIILSSNCPPLR 69 (75)
Q Consensus 41 GK~~LG~KqTlK~l~~---KLVIiA~NcP~~~ 69 (75)
..+.=|..++|+.|+. +++|++++.....
T Consensus 85 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~ 116 (225)
T 1nnl_A 85 PHLTPGIRELVSRLQERNVQVFLISGGFRSIV 116 (225)
T ss_dssp CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHH
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCChHHHH
Confidence 4567799999999988 6666665544433
No 57
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Probab=26.61 E-value=88 Score=19.00 Aligned_cols=32 Identities=13% Similarity=-0.024 Sum_probs=22.8
Q ss_pred hcceEeehHHHHHHHhh---ceeeeeCCCChhhhh
Q 037081 40 SGKYTLGYKAAIRSLRR---NLIILSSNCPPLRKS 71 (75)
Q Consensus 40 TGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K~ 71 (75)
.-...-|....++.|+. +++|++++.+...+.
T Consensus 89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~ 123 (233)
T 3s6j_A 89 QIIALPGAVELLETLDKENLKWCIATSGGIDTATI 123 (233)
T ss_dssp GCEECTTHHHHHHHHHHTTCCEEEECSSCHHHHHH
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCchhhHHH
Confidence 35677789999999988 777777665544443
No 58
>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}
Probab=26.30 E-value=82 Score=19.18 Aligned_cols=33 Identities=21% Similarity=0.091 Sum_probs=22.9
Q ss_pred HHhcceEeehHHHHHHHhh---ceeeeeCCCChhhh
Q 037081 38 MKSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRK 70 (75)
Q Consensus 38 ~KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K 70 (75)
...-...=|....++.++. +++|++++.+...+
T Consensus 92 ~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 127 (230)
T 3um9_A 92 YLSLTPFADVPQALQQLRAAGLKTAILSNGSRHSIR 127 (230)
T ss_dssp TTSCCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred HhcCCCCCCHHHHHHHHHhCCCeEEEEeCCCHHHHH
Confidence 3455667788999999988 66776665544433
No 59
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=26.19 E-value=48 Score=20.31 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=21.0
Q ss_pred hcceEeehHHHHHHHhh---ceeeeeCCCChhhh
Q 037081 40 SGKYTLGYKAAIRSLRR---NLIILSSNCPPLRK 70 (75)
Q Consensus 40 TGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K 70 (75)
.....=|..+.++.++. +++|++++.+...+
T Consensus 68 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 101 (205)
T 3m9l_A 68 GSRPAPGAVELVRELAGRGYRLGILTRNARELAH 101 (205)
T ss_dssp EEEECTTHHHHHHHHHHTTCEEEEECSSCHHHHH
T ss_pred cCCCCccHHHHHHHHHhcCCeEEEEeCCchHHHH
Confidence 34555688999999988 66666665554443
No 60
>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}
Probab=25.86 E-value=98 Score=18.74 Aligned_cols=32 Identities=25% Similarity=0.126 Sum_probs=21.4
Q ss_pred HhcceEeehHHHHHHHhh--ceeeeeCCCChhhh
Q 037081 39 KSGKYTLGYKAAIRSLRR--NLIILSSNCPPLRK 70 (75)
Q Consensus 39 KTGK~~LG~KqTlK~l~~--KLVIiA~NcP~~~K 70 (75)
..-...=|...+++.|+. +++|++++.+....
T Consensus 96 ~~~~~~~~~~~~l~~l~~~~~~~i~tn~~~~~~~ 129 (240)
T 3smv_A 96 KNWPAFPDTVEALQYLKKHYKLVILSNIDRNEFK 129 (240)
T ss_dssp GGCCBCTTHHHHHHHHHHHSEEEEEESSCHHHHH
T ss_pred hcCCCCCcHHHHHHHHHhCCeEEEEeCCChhHHH
Confidence 334566688899999988 77666655444433
No 61
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Probab=25.71 E-value=1.2e+02 Score=18.90 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=20.6
Q ss_pred HhcceEeehHHHHHHHhh---ceeeeeCCCChhh
Q 037081 39 KSGKYTLGYKAAIRSLRR---NLIILSSNCPPLR 69 (75)
Q Consensus 39 KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~ 69 (75)
..-...=|..++++.|+. +++|++++.+...
T Consensus 102 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~ 135 (240)
T 2no4_A 102 KELSAYPDAAETLEKLKSAGYIVAILSNGNDEML 135 (240)
T ss_dssp HTCCBCTTHHHHHHHHHHTTCEEEEEESSCHHHH
T ss_pred hcCCCCCCHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence 344556788999999987 6666655544333
No 62
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=25.69 E-value=46 Score=22.47 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=19.7
Q ss_pred ceEeehHHHHHHHhh---ceeeeeCCCChhhh
Q 037081 42 KYTLGYKAAIRSLRR---NLIILSSNCPPLRK 70 (75)
Q Consensus 42 K~~LG~KqTlK~l~~---KLVIiA~NcP~~~K 70 (75)
...=|..++|+.|+. +++|++++.+....
T Consensus 163 ~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~ 194 (287)
T 3a1c_A 163 TLKESAKPAVQELKRMGIKVGMITGDNWRSAE 194 (287)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEECSSCHHHHH
T ss_pred ccchhHHHHHHHHHHCCCeEEEEeCCCHHHHH
Confidence 344578899999987 67666666554443
No 63
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Probab=25.01 E-value=56 Score=20.21 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=19.3
Q ss_pred cceEeehHHHHHHHhh---ceeeeeCCCChhh
Q 037081 41 GKYTLGYKAAIRSLRR---NLIILSSNCPPLR 69 (75)
Q Consensus 41 GK~~LG~KqTlK~l~~---KLVIiA~NcP~~~ 69 (75)
-...=|....++.|+. +++|++++.+...
T Consensus 94 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~ 125 (232)
T 1zrn_A 94 LAPFSEVPDSLRELKRRGLKLAILSNGSPQSI 125 (232)
T ss_dssp CEECTTHHHHHHHHHHTTCEEEEEESSCHHHH
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence 3455688999999987 6666655544333
No 64
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A
Probab=24.88 E-value=51 Score=20.76 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=18.5
Q ss_pred cceEeehHHHHHHHhh---ceeeeeCCCCh
Q 037081 41 GKYTLGYKAAIRSLRR---NLIILSSNCPP 67 (75)
Q Consensus 41 GK~~LG~KqTlK~l~~---KLVIiA~NcP~ 67 (75)
-...=|...+++.|+. +++|++++.+.
T Consensus 82 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~ 111 (222)
T 2nyv_A 82 TKPYPEIPYTLEALKSKGFKLAVVSNKLEE 111 (222)
T ss_dssp CEECTTHHHHHHHHHHTTCEEEEECSSCHH
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEcCCCHH
Confidence 3455688999999987 66666655443
No 65
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=24.70 E-value=55 Score=21.02 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=14.6
Q ss_pred HhHHHHHHHHHHhcceEe
Q 037081 28 ESINNRLALVMKSGKYTL 45 (75)
Q Consensus 28 ~~i~~~L~la~KTGK~~L 45 (75)
.+++..|+.+.++||.+|
T Consensus 31 ~~~~~al~~A~~~~KpVl 48 (151)
T 3ph9_A 31 QTYEEGLFYAQKSKKPLM 48 (151)
T ss_dssp SSHHHHHHHHHHHTCCEE
T ss_pred hCHHHHHHHHHHcCCcEE
Confidence 478888888888888776
No 66
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=23.70 E-value=57 Score=20.18 Aligned_cols=32 Identities=13% Similarity=0.112 Sum_probs=22.3
Q ss_pred HhcceEeehHHHHHHHhh---ceeeeeCCCChhhh
Q 037081 39 KSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRK 70 (75)
Q Consensus 39 KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K 70 (75)
..-...=|....++.|+. +++|++++.+...+
T Consensus 101 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 135 (237)
T 4ex6_A 101 GPRLLYPGVLEGLDRLSAAGFRLAMATSKVEKAAR 135 (237)
T ss_dssp GGGGBCTTHHHHHHHHHHTTEEEEEECSSCHHHHH
T ss_pred cCCccCCCHHHHHHHHHhCCCcEEEEcCCChHHHH
Confidence 445677889999999988 66666655544433
No 67
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A
Probab=23.15 E-value=58 Score=21.74 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=18.9
Q ss_pred ceEeehHHHHHHHhh---ceeeeeCCCChhhh
Q 037081 42 KYTLGYKAAIRSLRR---NLIILSSNCPPLRK 70 (75)
Q Consensus 42 K~~LG~KqTlK~l~~---KLVIiA~NcP~~~K 70 (75)
...=|..++|+.|+. ++.|++|+.+...+
T Consensus 130 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~ 161 (261)
T 1yns_A 130 EFFADVVPAVRKWREAGMKVYIYSSGSVEAQK 161 (261)
T ss_dssp CCCTTHHHHHHHHHHTTCEEEEECSSCHHHHH
T ss_pred ccCcCHHHHHHHHHhCCCeEEEEeCCCHHHHH
Confidence 445588999999987 56655555443333
No 68
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=23.11 E-value=44 Score=25.39 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=21.0
Q ss_pred eehHHHHHHHhh---ceeeeeCCCChhhhh
Q 037081 45 LGYKAAIRSLRR---NLIILSSNCPPLRKS 71 (75)
Q Consensus 45 LG~KqTlK~l~~---KLVIiA~NcP~~~K~ 71 (75)
=|..++|+.|+. ++.|+++|..+.++.
T Consensus 259 pgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~ 288 (387)
T 3nvb_A 259 TEFQEWVKKLKNRGIIIAVCSKNNEGKAKE 288 (387)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Confidence 356778898888 888998888776654
No 69
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=22.82 E-value=68 Score=24.62 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=21.2
Q ss_pred HhcceEeehHHHHHHHhh---ceeeeeCCC
Q 037081 39 KSGKYTLGYKAAIRSLRR---NLIILSSNC 65 (75)
Q Consensus 39 KTGK~~LG~KqTlK~l~~---KLVIiA~Nc 65 (75)
.+|+++.|.+.+++++.. .-++|+.+.
T Consensus 302 d~g~a~YG~~eV~~Ale~GAVetLLIsD~l 331 (441)
T 3e20_C 302 DSGKYCFGVVDTMNALQEGAVETLLCFADL 331 (441)
T ss_dssp TCSCCCCSHHHHHHHHHSSCCSEEEEETTC
T ss_pred CCCcEEECHHHHHHHHHhCCccEEEEeccc
Confidence 379999999999999999 445555443
No 70
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=22.78 E-value=61 Score=20.17 Aligned_cols=26 Identities=8% Similarity=0.003 Sum_probs=18.7
Q ss_pred ceEeehHHHHHHHhh---ceeeeeCCCCh
Q 037081 42 KYTLGYKAAIRSLRR---NLIILSSNCPP 67 (75)
Q Consensus 42 K~~LG~KqTlK~l~~---KLVIiA~NcP~ 67 (75)
.+.=|...+|+.|+. +++|++++...
T Consensus 92 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~ 120 (232)
T 3fvv_A 92 SLTVQAVDVVRGHLAAGDLCALVTATNSF 120 (232)
T ss_dssp GCCHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred hcCHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 567789999999987 66666655443
No 71
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}
Probab=22.73 E-value=59 Score=20.09 Aligned_cols=30 Identities=3% Similarity=0.083 Sum_probs=19.3
Q ss_pred cceEeehHHHHHHHhh---ceeeeeCCCChhhh
Q 037081 41 GKYTLGYKAAIRSLRR---NLIILSSNCPPLRK 70 (75)
Q Consensus 41 GK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K 70 (75)
-...-|....++.++. +++|++++.+....
T Consensus 107 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~ 139 (247)
T 3dv9_A 107 AERMPGALEVLTKIKSEGLTPMVVTGSGQTSLL 139 (247)
T ss_dssp CCBCTTHHHHHHHHHHTTCEEEEECSCC---CH
T ss_pred CCCCCCHHHHHHHHHHcCCcEEEEcCCchHHHH
Confidence 4556788999999988 66666655544333
No 72
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=22.68 E-value=67 Score=19.29 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=15.1
Q ss_pred HHHHHhh---ceeeeeCCCChhhhh
Q 037081 50 AIRSLRR---NLIILSSNCPPLRKS 71 (75)
Q Consensus 50 TlK~l~~---KLVIiA~NcP~~~K~ 71 (75)
+++.|+. +++|++++.++..+.
T Consensus 39 ~l~~l~~~g~~~~i~T~~~~~~~~~ 63 (164)
T 3e8m_A 39 GIFWAHNKGIPVGILTGEKTEIVRR 63 (164)
T ss_dssp HHHHHHHTTCCEEEECSSCCHHHHH
T ss_pred HHHHHHHCCCEEEEEeCCChHHHHH
Confidence 7888887 777777665555443
No 73
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}
Probab=22.54 E-value=65 Score=20.26 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=18.7
Q ss_pred cceEeehHHHHHHHhh---ceeeeeCCCCh
Q 037081 41 GKYTLGYKAAIRSLRR---NLIILSSNCPP 67 (75)
Q Consensus 41 GK~~LG~KqTlK~l~~---KLVIiA~NcP~ 67 (75)
-...=|...+++.|+. +++|++++.+.
T Consensus 93 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~ 122 (241)
T 2hoq_A 93 LREVPGARKVLIRLKELGYELGIITDGNPV 122 (241)
T ss_dssp CCBCTTHHHHHHHHHHHTCEEEEEECSCHH
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEECCCch
Confidence 4456689999999987 66666544333
No 74
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2
Probab=22.48 E-value=61 Score=19.55 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=17.5
Q ss_pred eEeehHHHHHHHhh---ceeeeeCCCChh
Q 037081 43 YTLGYKAAIRSLRR---NLIILSSNCPPL 68 (75)
Q Consensus 43 ~~LG~KqTlK~l~~---KLVIiA~NcP~~ 68 (75)
..=|..++++.|+. +++|++++.+..
T Consensus 92 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~ 120 (206)
T 2b0c_A 92 LRPEVIAIMHKLREQGHRVVVLSNTNRLH 120 (206)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEECCCCCT
T ss_pred cCccHHHHHHHHHHCCCeEEEEECCChHH
Confidence 34478888888886 677776554443
No 75
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}
Probab=21.93 E-value=38 Score=20.33 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=20.7
Q ss_pred ceEeehHHHHHHHhh---ceeeeeCCCChhhh
Q 037081 42 KYTLGYKAAIRSLRR---NLIILSSNCPPLRK 70 (75)
Q Consensus 42 K~~LG~KqTlK~l~~---KLVIiA~NcP~~~K 70 (75)
...=|..++++.++. +++|++++.....+
T Consensus 82 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 113 (219)
T 3kd3_A 82 LLTDGIKELVQDLKNKGFEIWIFSGGLSESIQ 113 (219)
T ss_dssp TBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHH
T ss_pred cCChhHHHHHHHHHHCCCeEEEEcCCcHHHHH
Confidence 466788899999988 77777766544443
No 76
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=21.60 E-value=79 Score=19.25 Aligned_cols=19 Identities=5% Similarity=0.114 Sum_probs=14.8
Q ss_pred HHhHHHHHHHHHHhcceEe
Q 037081 27 HESINNRLALVMKSGKYTL 45 (75)
Q Consensus 27 ~~~i~~~L~la~KTGK~~L 45 (75)
..+++..|..+-..||++|
T Consensus 33 ~~~~~~~~~~a~~~gk~vl 51 (172)
T 3f9u_A 33 FDDYDLGMEYARQHNKPVM 51 (172)
T ss_dssp BSCHHHHHHHHHHTTCCEE
T ss_pred hhhHHHHHHHHHHcCCeEE
Confidence 4678888888888888775
No 77
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Probab=21.44 E-value=1.4e+02 Score=18.83 Aligned_cols=32 Identities=19% Similarity=0.081 Sum_probs=22.7
Q ss_pred HhcceEeehHHHHHHHhh---ceeeeeCCCChhhh
Q 037081 39 KSGKYTLGYKAAIRSLRR---NLIILSSNCPPLRK 70 (75)
Q Consensus 39 KTGK~~LG~KqTlK~l~~---KLVIiA~NcP~~~K 70 (75)
..-...=|....++.|+. +++|++++.+...+
T Consensus 107 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 141 (259)
T 4eek_A 107 TGVTAIEGAAETLRALRAAGVPFAIGSNSERGRLH 141 (259)
T ss_dssp TTCEECTTHHHHHHHHHHHTCCEEEECSSCHHHHH
T ss_pred ccCCcCccHHHHHHHHHHCCCeEEEEeCCCHHHHH
Confidence 456677789999999987 67776665544443
No 78
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=21.24 E-value=1.5e+02 Score=22.25 Aligned_cols=26 Identities=27% Similarity=0.639 Sum_probs=22.0
Q ss_pred hcceEeehHHHHHHHhh---ceeeeeCCC
Q 037081 40 SGKYTLGYKAAIRSLRR---NLIILSSNC 65 (75)
Q Consensus 40 TGK~~LG~KqTlK~l~~---KLVIiA~Nc 65 (75)
+|+++.|.+.+++++.. ..++|+.|.
T Consensus 298 ~g~a~yG~~eV~~Al~~GaVetLLv~d~l 326 (437)
T 1dt9_A 298 TGKYCFGVEDTLKALEMGAVEILIVYENL 326 (437)
T ss_dssp SCCEEESHHHHHHHHHSSCCSEEEEESCC
T ss_pred CCcEEecHHHHHHHHHhCCccEEEEecCc
Confidence 69999999999999998 666666664
No 79
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}
Probab=21.20 E-value=63 Score=20.21 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=18.7
Q ss_pred ceEeehHHHHHHHhh---ceeeeeCCCChhhh
Q 037081 42 KYTLGYKAAIRSLRR---NLIILSSNCPPLRK 70 (75)
Q Consensus 42 K~~LG~KqTlK~l~~---KLVIiA~NcP~~~K 70 (75)
...=|..++++.|+. +++|+ +|.|....
T Consensus 95 ~~~~~~~~~l~~l~~~g~~~~i~-Tn~~~~~~ 125 (220)
T 2zg6_A 95 FLYDDTLEFLEGLKSNGYKLALV-SNASPRVK 125 (220)
T ss_dssp EECTTHHHHHHHHHTTTCEEEEC-CSCHHHHH
T ss_pred eECcCHHHHHHHHHHCCCEEEEE-eCCcHHHH
Confidence 344588999999987 55555 55565443
No 80
>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*
Probab=20.88 E-value=62 Score=20.14 Aligned_cols=29 Identities=17% Similarity=0.128 Sum_probs=20.3
Q ss_pred cceEeehHHHHHHHhh----ceeeeeCCCChhh
Q 037081 41 GKYTLGYKAAIRSLRR----NLIILSSNCPPLR 69 (75)
Q Consensus 41 GK~~LG~KqTlK~l~~----KLVIiA~NcP~~~ 69 (75)
-...=|..++|+.|+. +++|++++.+...
T Consensus 72 ~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~ 104 (193)
T 2i7d_A 72 LEPIPGALDAVREMNDLPDTQVFICTSPLLKYH 104 (193)
T ss_dssp CCBCTTHHHHHHHHHTSTTEEEEEEECCCSSCT
T ss_pred CccCcCHHHHHHHHHhCCCCeEEEEeCCChhhH
Confidence 4556699999999985 5666666655443
No 81
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=20.48 E-value=83 Score=19.57 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=11.9
Q ss_pred HhHHHHHHHHHHhcceEe
Q 037081 28 ESINNRLALVMKSGKYTL 45 (75)
Q Consensus 28 ~~i~~~L~la~KTGK~~L 45 (75)
.+++..+..+...||++|
T Consensus 33 ~~~~~~~~~~~~~~k~vl 50 (164)
T 1sen_A 33 RTLEDGKKEAAASGLPLM 50 (164)
T ss_dssp CCHHHHHHHHHHHTCCEE
T ss_pred cCHHHHHHHHHhcCCeEE
Confidence 356667777777777654
No 82
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=20.09 E-value=52 Score=20.10 Aligned_cols=29 Identities=21% Similarity=0.120 Sum_probs=22.7
Q ss_pred ceehhhhhhhhHHhHHHHHHHHHHhcceE
Q 037081 16 GYWLGVLEKKTHESINNRLALVMKSGKYT 44 (75)
Q Consensus 16 ~~~~~k~~k~~~~~i~~~L~la~KTGK~~ 44 (75)
+.+++++-..+..++|+.|-..-++|.|.
T Consensus 32 a~~IAkkLg~sK~~vNr~LY~L~kkG~V~ 60 (75)
T 1sfu_A 32 AISLSNRLKINKKKINQQLYKLQKEDTVK 60 (75)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 34577777766678999999999999874
Done!