BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037083
         (147 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NKM|A Chain A, Crystal Structure Of Mouse Autotaxin
 pdb|3NKN|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
           14:0-Lpa
 pdb|3NKO|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
           16:0-Lpa
 pdb|3NKP|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
           18:1-Lpa
 pdb|3NKQ|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
           18:3-Lpa
 pdb|3NKR|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
           22:6-Lpa
          Length = 831

 Score = 28.9 bits (63), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 67  CHKDNEVCSLFGRNSTCCNNKCMDLSTDDKNCGACKKKCKFTEACC 112
           CH  +E+C    R   C  ++C ++  ++  C  C + C     CC
Sbjct: 51  CHDFDELCLKTARGWECTKDRCGEVRNEENAC-HCSEDCLSRGDCC 95


>pdb|2XRG|A Chain A, Crystal Structure Of Autotaxin (Enpp2) In Complex With The
           Ha155 Boronic Acid Inhibitor
          Length = 862

 Score = 28.9 bits (63), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 67  CHKDNEVCSLFGRNSTCCNNKCMDLSTDDKNCGACKKKCKFTEACC 112
           CH  +E+C    R   C  ++C ++  ++  C  C + C     CC
Sbjct: 86  CHDFDELCLKTARGWECTKDRCGEVRNEENAC-HCSEDCLSRGDCC 130


>pdb|2XR9|A Chain A, Crystal Structure Of Autotaxin (Enpp2)
          Length = 827

 Score = 28.9 bits (63), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 67  CHKDNEVCSLFGRNSTCCNNKCMDLSTDDKNCGACKKKCKFTEACC 112
           CH  +E+C    R   C  ++C ++  ++  C  C + C     CC
Sbjct: 51  CHDFDELCLKTARGWECTKDRCGEVRNEENAC-HCSEDCLSRGDCC 95


>pdb|2GTH|A Chain A, Crystal Structure Of The Wildtype Mhv Coronavirus
           Non-Structural Protein Nsp15
          Length = 370

 Score = 27.3 bits (59), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 82  TCCNNKCMDLSTDDKNCGACKKKCKFTEACCRGQCVNLSFDKRHCGRCN--NRCEKGQFC 139
            C ++   D + D   C +  K CK+T+  C  + +N+ FD R  G      +C  G + 
Sbjct: 80  VCWSHVLWDYAKDSVFCSSTYKVCKYTDLQCI-ESLNVLFDGRDNGALEAFKKCRNGVYI 138


>pdb|2GTI|A Chain A, Mutation Of Mhv Coronavirus Non-Structural Protein Nsp15
           (F307l)
          Length = 370

 Score = 27.3 bits (59), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 82  TCCNNKCMDLSTDDKNCGACKKKCKFTEACCRGQCVNLSFDKRHCGRCN--NRCEKGQFC 139
            C ++   D + D   C +  K CK+T+  C  + +N+ FD R  G      +C  G + 
Sbjct: 80  VCWSHVLWDYAKDSVFCSSTYKVCKYTDLQCI-ESLNVLFDGRDNGALEAFKKCRNGVYI 138


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.457 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,875,750
Number of Sequences: 62578
Number of extensions: 150804
Number of successful extensions: 344
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 37
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)