Query 037083
Match_columns 147
No_of_seqs 151 out of 221
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 08:28:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04885 Stig1: Stigma-specifi 100.0 1.4E-37 3.1E-42 240.0 7.6 94 46-147 40-136 (136)
2 PF04885 Stig1: Stigma-specifi 99.2 9.8E-12 2.1E-16 96.4 5.6 52 94-146 56-107 (136)
3 PF02950 Conotoxin: Conotoxin; 89.8 0.17 3.7E-06 34.1 1.2 23 65-89 48-70 (75)
4 PF07172 GRP: Glycine rich pro 89.0 0.36 7.8E-06 35.4 2.5 21 1-22 1-21 (95)
5 PF07172 GRP: Glycine rich pro 75.5 3 6.5E-05 30.5 2.8 22 2-23 5-26 (95)
6 PF15284 PAGK: Phage-encoded v 66.3 6 0.00013 27.3 2.4 23 1-23 1-23 (61)
7 PRK12750 cpxP periplasmic repr 57.8 11 0.00024 30.0 3.0 21 1-21 1-21 (170)
8 PRK13791 lysozyme inhibitor; P 57.5 13 0.00029 28.1 3.2 21 1-21 1-21 (113)
9 COG4808 Uncharacterized protei 56.8 12 0.00026 30.0 2.9 23 1-23 1-23 (152)
10 PF11912 DUF3430: Protein of u 55.2 11 0.00023 29.5 2.5 14 1-14 1-14 (212)
11 PF10880 DUF2673: Protein of u 53.3 13 0.00028 25.7 2.3 13 1-13 1-14 (65)
12 PF06357 Omega-toxin: Omega-at 48.5 11 0.00023 23.7 1.1 17 130-146 8-24 (37)
13 PF05453 Toxin_6: BmTXKS1/BmP0 46.8 6.2 0.00013 23.4 -0.1 24 66-89 2-25 (28)
14 PF05968 Bacillus_PapR: Bacill 45.6 21 0.00046 23.5 2.3 21 1-21 1-21 (48)
15 PF03823 Neurokinin_B: Neuroki 44.9 19 0.00042 24.7 2.1 27 4-30 1-27 (59)
16 PLN02159 Fe(2+) transport prot 43.4 19 0.00041 31.7 2.3 23 1-23 1-23 (337)
17 MTH00042 ND3 NADH dehydrogenas 43.3 45 0.00097 24.8 4.1 18 1-18 1-18 (116)
18 PF10717 ODV-E18: Occlusion-de 42.5 39 0.00084 24.8 3.5 25 3-27 27-51 (85)
19 MTH00012 ND3 NADH dehydrogenas 42.3 50 0.0011 24.6 4.2 18 1-18 1-18 (117)
20 PF12798 Fer4_3: 4Fe-4S bindin 41.9 7.9 0.00017 19.5 -0.1 12 125-136 3-14 (15)
21 PF12930 DUF3836: Family of un 41.5 9.9 0.00021 29.3 0.3 22 3-24 6-27 (132)
22 PF08087 Toxin_18: Conotoxin O 41.3 12 0.00025 22.6 0.5 18 102-119 7-24 (31)
23 PHA02706 hypothetical protein; 41.0 30 0.00065 23.3 2.5 22 1-22 1-22 (58)
24 PF11912 DUF3430: Protein of u 41.0 19 0.00042 28.1 1.9 18 4-21 1-18 (212)
25 TIGR02163 napH_ ferredoxin-typ 39.7 13 0.00029 30.8 0.8 40 96-136 204-249 (255)
26 TIGR02209 ftsL_broad cell divi 39.2 44 0.00095 22.6 3.2 16 1-16 1-16 (85)
27 PF08105 Antimicrobial10: Metc 38.9 42 0.00091 22.5 2.9 7 49-55 37-43 (52)
28 PRK09477 napH quinol dehydroge 38.9 18 0.0004 30.2 1.6 41 96-136 211-257 (271)
29 PF12354 Internalin_N: Bacteri 38.5 13 0.00027 25.0 0.4 28 3-30 6-33 (57)
30 PF05436 MF_alpha_N: Mating fa 38.4 34 0.00073 25.1 2.6 14 1-14 1-14 (86)
31 PF08194 DIM: DIM protein; In 38.0 28 0.00061 21.7 1.9 12 1-12 1-12 (36)
32 PF12071 DUF3551: Protein of u 37.8 42 0.0009 24.0 3.0 7 66-72 63-69 (82)
33 smart00289 WR1 Worm-specific r 37.3 29 0.00063 20.1 1.8 26 118-144 8-36 (38)
34 TIGR02184 Myco_arth_vir_N Myco 37.2 21 0.00046 21.9 1.2 16 7-22 11-26 (33)
35 PRK13728 conjugal transfer pro 35.9 26 0.00057 28.3 2.0 21 1-21 1-21 (181)
36 PF04060 FeS: Putative Fe-S cl 35.8 13 0.00028 22.4 0.2 10 95-104 4-13 (35)
37 PF05538 Campylo_MOMP: Campylo 35.7 23 0.00051 32.6 1.8 14 1-14 1-14 (431)
38 PF12869 tRNA_anti-like: tRNA_ 35.4 12 0.00027 27.4 0.0 21 1-21 1-22 (144)
39 PRK14864 putative biofilm stre 35.0 41 0.00089 25.2 2.7 19 1-19 2-20 (104)
40 PF15240 Pro-rich: Proline-ric 34.8 31 0.00067 28.3 2.2 22 4-25 1-22 (179)
41 PRK10081 entericidin B membran 34.6 60 0.0013 21.4 3.1 17 5-21 4-20 (48)
42 PRK12450 foldase protein PrsA; 34.5 44 0.00096 28.5 3.2 23 1-23 1-23 (309)
43 PRK00059 prsA peptidylprolyl i 34.1 39 0.00086 28.4 2.8 22 1-22 1-22 (336)
44 PF02402 Lysis_col: Lysis prot 33.3 13 0.00028 24.3 -0.2 13 1-15 1-13 (46)
45 TIGR03379 glycerol3P_GlpC glyc 32.3 31 0.00067 29.8 1.9 39 96-136 8-67 (397)
46 PF09716 ETRAMP: Malarial earl 31.9 45 0.00097 23.7 2.4 19 1-19 1-19 (84)
47 PRK04405 prsA peptidylprolyl i 31.4 52 0.0011 28.0 3.2 22 1-22 1-23 (298)
48 PF10916 DUF2712: Protein of u 30.7 67 0.0015 25.7 3.4 16 3-18 4-19 (146)
49 COG3111 Periplasmic protein wi 30.6 48 0.001 26.0 2.5 21 1-21 1-21 (128)
50 COG5510 Predicted small secret 30.4 73 0.0016 20.7 2.9 19 4-22 3-21 (44)
51 PF09065 Haemadin: Haemadin; 30.0 15 0.00032 21.3 -0.3 15 131-145 6-20 (27)
52 PRK13681 hypothetical protein; 29.7 53 0.0012 20.4 2.1 14 1-14 1-14 (35)
53 cd00925 Cyt_c_Oxidase_VIa Cyto 29.6 57 0.0012 23.7 2.6 20 2-21 14-33 (86)
54 PF05782 ECM1: Extracellular m 29.4 94 0.002 29.5 4.6 23 1-23 1-23 (544)
55 PF00037 Fer4: 4Fe-4S binding 29.4 14 0.0003 20.2 -0.5 12 125-136 10-21 (24)
56 PF14608 zf-CCCH_2: Zinc finge 29.2 39 0.00085 17.7 1.3 14 133-146 2-16 (19)
57 PF04706 Dickkopf_N: Dickkopf 28.5 35 0.00075 22.6 1.2 31 114-145 21-51 (52)
58 PF07403 DUF1505: Protein of u 27.8 34 0.00073 26.3 1.2 16 10-25 7-22 (114)
59 TIGR01495 ETRAMP Plasmodium ri 27.7 55 0.0012 23.6 2.3 17 1-17 1-17 (85)
60 PF05170 AsmA: AsmA family; I 27.5 65 0.0014 29.3 3.2 18 1-18 1-19 (604)
61 PRK13183 psbN photosystem II r 27.3 89 0.0019 20.5 3.0 7 32-38 38-44 (46)
62 PF01683 EB: EB module; Inter 26.9 78 0.0017 19.6 2.7 40 105-145 1-40 (52)
63 TIGR01710 typeII_sec_gspG gene 26.8 62 0.0014 24.2 2.5 19 2-20 7-25 (134)
64 PRK04517 hypothetical protein; 26.7 46 0.001 27.3 1.9 14 1-14 1-14 (216)
65 PRK11168 glpC sn-glycerol-3-ph 26.7 57 0.0012 28.0 2.6 41 96-136 10-69 (396)
66 PF10907 DUF2749: Protein of u 26.0 21 0.00046 25.0 -0.1 7 50-56 43-49 (66)
67 PRK01904 hypothetical protein; 26.0 68 0.0015 26.3 2.8 13 1-13 1-13 (219)
68 COG3470 Tpd Uncharacterized pr 25.9 76 0.0017 26.0 3.0 20 1-20 1-20 (179)
69 PF11777 DUF3316: Protein of u 25.5 63 0.0014 23.7 2.3 10 5-14 2-11 (114)
70 MTH00203 ND3 NADH dehydrogenas 25.1 1.3E+02 0.0029 22.0 4.0 18 1-18 1-18 (112)
71 PF08139 LPAM_1: Prokaryotic m 24.9 85 0.0018 18.0 2.3 13 2-14 5-17 (25)
72 PRK14494 putative molybdopteri 24.7 29 0.00064 28.8 0.5 15 92-106 147-161 (229)
73 smart00608 ACR ADAM Cysteine-R 24.7 45 0.00097 25.5 1.4 18 102-119 120-137 (137)
74 TIGR02494 PFLE_PFLC glycyl-rad 24.6 35 0.00076 28.1 0.9 39 97-136 52-97 (295)
75 COG3137 Putative salt-induced 24.5 55 0.0012 28.3 2.1 10 31-40 46-55 (262)
76 PF15330 SIT: SHP2-interacting 24.0 95 0.0021 23.2 3.0 18 4-21 3-20 (107)
77 PF11337 DUF3139: Protein of u 23.4 1E+02 0.0022 21.4 3.0 15 1-15 1-15 (85)
78 PF09610 Myco_arth_vir_N: Myco 23.1 45 0.00099 20.5 0.9 16 7-22 11-26 (33)
79 PF11137 DUF2909: Protein of u 23.0 1.1E+02 0.0025 20.9 3.0 22 1-22 1-22 (63)
80 PF04835 Pox_A9: A9 protein co 22.3 1.5E+02 0.0032 20.1 3.4 23 3-25 26-48 (54)
81 PRK11636 mrcA penicillin-bindi 22.1 89 0.0019 30.9 3.2 17 1-17 1-17 (850)
82 CHL00020 psbN photosystem II p 22.1 99 0.0021 20.0 2.4 7 32-38 35-41 (43)
83 PRK15205 long polar fimbrial p 21.8 77 0.0017 24.5 2.3 14 1-14 1-14 (176)
84 PF00879 Defensin_propep: Defe 21.8 1.1E+02 0.0023 20.5 2.6 19 4-22 1-19 (52)
85 PF01599 Ribosomal_S27: Riboso 21.2 40 0.00087 22.0 0.5 14 90-103 33-46 (47)
86 PF12800 Fer4_4: 4Fe-4S bindin 21.2 53 0.0012 16.7 0.9 9 126-134 7-15 (17)
87 PRK09810 entericidin A; Provis 21.1 1E+02 0.0023 19.6 2.4 11 4-14 2-12 (41)
88 PF12782 Innate_immun: Inverte 21.0 33 0.00072 29.6 0.1 18 5-22 4-21 (311)
89 PRK15307 major fimbrial protei 20.8 97 0.0021 24.7 2.7 16 1-16 1-16 (201)
90 PRK09474 malE maltose ABC tran 20.8 1.3E+02 0.0027 25.3 3.5 21 1-21 1-21 (396)
91 PF07790 DUF1628: Protein of u 20.7 1.3E+02 0.0028 20.3 3.0 12 7-18 10-21 (80)
92 PF07835 COX4_pro_2: Bacterial 20.5 1E+02 0.0023 19.5 2.3 18 2-19 23-40 (44)
93 PF08116 Toxin_29: PhTx neurot 20.5 32 0.00069 20.8 -0.1 14 103-116 8-21 (31)
94 PF08091 Toxin_21: Spider inse 20.4 43 0.00094 21.2 0.5 9 82-90 13-21 (39)
95 PHA02291 hypothetical protein 20.4 98 0.0021 24.1 2.5 21 1-21 1-21 (132)
96 PRK06273 ferredoxin; Provision 20.3 39 0.00085 26.7 0.4 12 125-136 95-106 (165)
No 1
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=100.00 E-value=1.4e-37 Score=240.00 Aligned_cols=94 Identities=59% Similarity=1.241 Sum_probs=89.0
Q ss_pred CCCCCcchhhhhccCCccccccccccccccCc---CccccccCccccccccCCCcchhcccCCCCCccccCCccccCccC
Q 037083 46 PSKRGSRFLAEADKNPRAADHCHKDNEVCSLF---GRNSTCCNNKCMDLSTDDKNCGACKKKCKFTEACCRGQCVNLSFD 122 (147)
Q Consensus 46 ~~~r~srfLa~~~~~~~~~~~C~~~~~iC~~~---~~g~~cC~~~Cvd~~tD~~NCG~Cg~~C~~g~~CC~G~Cvdl~~D 122 (147)
.+.+++|||++ ++|+++|+||..+ ++|++||+++|||+.+|++|||+||++|+++++||+|+|||+.+|
T Consensus 40 ~~~~~~~~~~~--------~~C~~~~~iC~~~~~~~~~~~CC~~~Cvdv~~d~~nCG~Cg~~C~~g~~cC~G~Cvd~~~d 111 (136)
T PF04885_consen 40 VSSRPSRFLAH--------DTCNKDPWICSAKGKCSPGPTCCNNKCVDVSSDRNNCGACGNKCPYGQTCCGGQCVDLNSD 111 (136)
T ss_pred ccCCccccccc--------cccCCCchhhcCCCCCCCCCcccCCcCCccCCCccccHhhcCCCCCCceecCCEeECCCCC
Confidence 34567788866 8999999999999 789999999999999999999999999999999999999999999
Q ss_pred CCcchhcCcCCCCCCccCCceecCC
Q 037083 123 KRHCGRCNNRCEKGQFCVYGMCDYA 147 (147)
Q Consensus 123 ~~nCG~Cg~~C~~g~~C~~G~C~ya 147 (147)
++|||+||++|+.|+.|++|+|.||
T Consensus 112 ~~~CG~Cg~~C~~G~~C~~G~C~ya 136 (136)
T PF04885_consen 112 PRHCGACGNKCPPGQKCVYGMCGYA 136 (136)
T ss_pred ccccCCCCCcCCCcCCcCCeECCCC
Confidence 9999999999999999999999998
No 2
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=99.25 E-value=9.8e-12 Score=96.41 Aligned_cols=52 Identities=40% Similarity=0.905 Sum_probs=47.6
Q ss_pred CCCcchhcccCCCCCccccCCccccCccCCCcchhcCcCCCCCCccCCceecC
Q 037083 94 DDKNCGACKKKCKFTEACCRGQCVNLSFDKRHCGRCNNRCEKGQFCVYGMCDY 146 (147)
Q Consensus 94 D~~NCG~Cg~~C~~g~~CC~G~Cvdl~~D~~nCG~Cg~~C~~g~~C~~G~C~y 146 (147)
++.-|..-+ ....+.+||+++|||+.+|++|||.||++|+.|+.|..|.|++
T Consensus 56 ~~~iC~~~~-~~~~~~~CC~~~Cvdv~~d~~nCG~Cg~~C~~g~~cC~G~Cvd 107 (136)
T PF04885_consen 56 DPWICSAKG-KCSPGPTCCNNKCVDVSSDRNNCGACGNKCPYGQTCCGGQCVD 107 (136)
T ss_pred CchhhcCCC-CCCCCCcccCCcCCccCCCccccHhhcCCCCCCceecCCEeEC
Confidence 666777777 7788999999999999999999999999999999999999975
No 3
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=89.81 E-value=0.17 Score=34.12 Aligned_cols=23 Identities=35% Similarity=0.920 Sum_probs=13.0
Q ss_pred cccccccccccCcCccccccCcccc
Q 037083 65 DHCHKDNEVCSLFGRNSTCCNNKCM 89 (147)
Q Consensus 65 ~~C~~~~~iC~~~~~g~~cC~~~Cv 89 (147)
..|......|.. .+..||++.|.
T Consensus 48 ~~C~~~g~~C~~--~~~~CC~~~C~ 70 (75)
T PF02950_consen 48 RRCTPPGSYCCK--RNSECCSGSCN 70 (75)
T ss_dssp --EB-TTSB-BT--TTTCBSSSCEE
T ss_pred cccCCCCCcCCC--CCCCCCCCccC
Confidence 467777777822 25679988876
No 4
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=88.96 E-value=0.36 Score=35.38 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=12.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhh
Q 037083 1 MNMMKIILTIAITMAITITLTM 22 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~~~ 22 (147)
|. -|+|++|+|+||+++.+|+
T Consensus 1 Ma-SK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISS 21 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHh
Confidence 55 4566666666666655554
No 5
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=75.45 E-value=3 Score=30.53 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhc
Q 037083 2 NMMKIILTIAITMAITITLTMK 23 (147)
Q Consensus 2 ~~~k~~~~l~i~~al~~~~~~~ 23 (147)
+||-+.++|+++|.|+..+++.
T Consensus 5 ~~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 5 AFLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred HHHHHHHHHHHHHHHHhhhhhH
Confidence 3566777777777777666653
No 6
>PF15284 PAGK: Phage-encoded virulence factor
Probab=66.27 E-value=6 Score=27.35 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=11.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhhc
Q 037083 1 MNMMKIILTIAITMAITITLTMK 23 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~~~~ 23 (147)
||-+|-+|+.+++.-.++++|++
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSas 23 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSAS 23 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHH
Confidence 77666555533333344444443
No 7
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=57.78 E-value=11 Score=30.01 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=16.8
Q ss_pred CchHHHHHHHHHHHHHHHHHh
Q 037083 1 MNMMKIILTIAITMAITITLT 21 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~~ 21 (147)
|++.|.+++++++++|++..+
T Consensus 1 ~~~~kkl~~~~v~~~l~lg~~ 21 (170)
T PRK12750 1 MKLAKKLVLAAVVLPLTLGTA 21 (170)
T ss_pred CchHHHHHHHHHHHHHHHHhh
Confidence 888999988888888887333
No 8
>PRK13791 lysozyme inhibitor; Provisional
Probab=57.54 E-value=13 Score=28.08 Aligned_cols=21 Identities=24% Similarity=0.165 Sum_probs=14.8
Q ss_pred CchHHHHHHHHHHHHHHHHHh
Q 037083 1 MNMMKIILTIAITMAITITLT 21 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~~ 21 (147)
|+.||++|++.++++|+.-..
T Consensus 1 ~~~mk~~~~~~~~~~ls~~~~ 21 (113)
T PRK13791 1 MMKRKLIPFTLFLAALSASTT 21 (113)
T ss_pred CchHHHHHHHHHHHHHhhhhh
Confidence 788999888776666554333
No 9
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.79 E-value=12 Score=29.96 Aligned_cols=23 Identities=9% Similarity=0.368 Sum_probs=19.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhhc
Q 037083 1 MNMMKIILTIAITMAITITLTMK 23 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~~~~ 23 (147)
||.++.+|.++.+|.++++++.-
T Consensus 1 Mk~l~kl~~~~~alil~~sl~gC 23 (152)
T COG4808 1 MKALNKLFSLVVALVLVFSLAGC 23 (152)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhc
Confidence 89999998888888888887764
No 10
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=55.22 E-value=11 Score=29.54 Aligned_cols=14 Identities=7% Similarity=0.408 Sum_probs=7.4
Q ss_pred CchHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITM 14 (147)
Q Consensus 1 m~~~k~~~~l~i~~ 14 (147)
|||+.+|++|++++
T Consensus 1 MKll~~lilli~~~ 14 (212)
T PF11912_consen 1 MKLLISLILLILLI 14 (212)
T ss_pred CcHHHHHHHHHHHH
Confidence 77755554444433
No 11
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=53.28 E-value=13 Score=25.72 Aligned_cols=13 Identities=38% Similarity=0.792 Sum_probs=7.9
Q ss_pred Cc-hHHHHHHHHHH
Q 037083 1 MN-MMKIILTIAIT 13 (147)
Q Consensus 1 m~-~~k~~~~l~i~ 13 (147)
|| |+||++||+..
T Consensus 1 mknllkillilafa 14 (65)
T PF10880_consen 1 MKNLLKILLILAFA 14 (65)
T ss_pred ChhHHHHHHHHHHh
Confidence 55 77777665443
No 12
>PF06357 Omega-toxin: Omega-atracotoxin; InterPro: IPR009415 This family consists of several Hadronyche versuta (Blue mountains funnel-web spider) specific omega-atracotoxin proteins. Omega-Atracotoxin-Hv1a is an insect-specific neurotoxin whose phylogenetic specificity derives from its ability to antagonise insect, but not vertebrate, voltage-gated calcium channels. Two spatially proximal residues, Asn(27) and Arg(35), form a contiguous molecular surface that is essential for toxin activity. It has been proposed that this surface of the beta-hairpin is a key site for interaction of the toxin with insect calcium channels [].; GO: 0019855 calcium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AXH_A 1HVW_A.
Probab=48.55 E-value=11 Score=23.65 Aligned_cols=17 Identities=29% Similarity=0.833 Sum_probs=7.2
Q ss_pred CcCCCCCCccCCceecC
Q 037083 130 NNRCEKGQFCVYGMCDY 146 (147)
Q Consensus 130 g~~C~~g~~C~~G~C~y 146 (147)
|..||..+.|+.|.|.|
T Consensus 8 gQPCPyne~CCs~sct~ 24 (37)
T PF06357_consen 8 GQPCPYNESCCSGSCTY 24 (37)
T ss_dssp TSB-SSCCCBSSS-EEE
T ss_pred CCcCCCCccccccccee
Confidence 34445555555555443
No 13
>PF05453 Toxin_6: BmTXKS1/BmP02 toxin family; InterPro: IPR008911 This family consists of several scorpion toxins which act by blocking small conductance calcium activated potassium ion channels in their victim.; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1ACW_A 1DU9_A 1WM8_A 2KTC_A 1WM7_A.
Probab=46.77 E-value=6.2 Score=23.44 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=18.6
Q ss_pred ccccccccccCcCccccccCcccc
Q 037083 66 HCHKDNEVCSLFGRNSTCCNNKCM 89 (147)
Q Consensus 66 ~C~~~~~iC~~~~~g~~cC~~~Cv 89 (147)
+|...|.+|..+.+.++|++++|+
T Consensus 2 ~Ce~Cp~hC~~k~ak~~c~n~~C~ 25 (28)
T PF05453_consen 2 GCEECPMHCKGKNAKPTCDNGKCN 25 (28)
T ss_dssp HCSCHHHCCCTTT-EEEEETTEEE
T ss_pred ccccchhhhcccCCcccccCceee
Confidence 567778888888777889999885
No 14
>PF05968 Bacillus_PapR: Bacillus PapR protein; InterPro: IPR009239 This family consists of the Bacillus species-specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific [].
Probab=45.58 E-value=21 Score=23.53 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=10.8
Q ss_pred CchHHHHHHHHHHHHHHHHHh
Q 037083 1 MNMMKIILTIAITMAITITLT 21 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~~ 21 (147)
||-+-+--+++++|+-.|++.
T Consensus 1 mkkll~~slltlam~~gislg 21 (48)
T PF05968_consen 1 MKKLLIGSLLTLAMAWGISLG 21 (48)
T ss_pred CchHHHhHHHHHHHHhhhhhh
Confidence 453444445555665555554
No 15
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=44.88 E-value=19 Score=24.68 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccc
Q 037083 4 MKIILTIAITMAITITLTMKGIGEAEE 30 (147)
Q Consensus 4 ~k~~~~l~i~~al~~~~~~~~~~~~e~ 30 (147)
|+..++++.+|||+++-+...+=|+.+
T Consensus 1 MR~~lLf~aiLalsla~s~gavCeesQ 27 (59)
T PF03823_consen 1 MRSTLLFAAILALSLARSFGAVCEESQ 27 (59)
T ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 456667777788888888765544333
No 16
>PLN02159 Fe(2+) transport protein
Probab=43.45 E-value=19 Score=31.68 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=17.6
Q ss_pred CchHHHHHHHHHHHHHHHHHhhc
Q 037083 1 MNMMKIILTIAITMAITITLTMK 23 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~~~~ 23 (147)
|.+||+.||++|+..++.+...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (337)
T PLN02159 1 MALMKLVFILLILVSFAVSPATS 23 (337)
T ss_pred CcHHHHHHHHHHHHHHHcCcccc
Confidence 78999999999887776644443
No 17
>MTH00042 ND3 NADH dehydrogenase subunit 3; Validated
Probab=43.30 E-value=45 Score=24.77 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=11.3
Q ss_pred CchHHHHHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITMAITI 18 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~ 18 (147)
|+.|.+++++++++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (116)
T MTH00042 1 MTNLIFFLLIILILTSLL 18 (116)
T ss_pred ChhHHHHHHHHHHHHHHH
Confidence 777777766666554444
No 18
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=42.52 E-value=39 Score=24.79 Aligned_cols=25 Identities=16% Similarity=0.449 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCc
Q 037083 3 MMKIILTIAITMAITITLTMKGIGE 27 (147)
Q Consensus 3 ~~k~~~~l~i~~al~~~~~~~~~~~ 27 (147)
||.|+.+|+|++-|.+-+-+++..+
T Consensus 27 lMtILivLVIIiLlImlfqsSS~~~ 51 (85)
T PF10717_consen 27 LMTILIVLVIIILLIMLFQSSSNGN 51 (85)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCC
Confidence 5666666666665555555544433
No 19
>MTH00012 ND3 NADH dehydrogenase subunit 3; Validated
Probab=42.35 E-value=50 Score=24.56 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=11.9
Q ss_pred CchHHHHHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITMAITI 18 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~ 18 (147)
|++|-+.+++++++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~l 18 (117)
T MTH00012 1 MSLMMIPMMISLILPPLV 18 (117)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 778887777766554444
No 20
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=41.90 E-value=7.9 Score=19.49 Aligned_cols=12 Identities=42% Similarity=1.165 Sum_probs=7.1
Q ss_pred cchhcCcCCCCC
Q 037083 125 HCGRCNNRCEKG 136 (147)
Q Consensus 125 nCG~Cg~~C~~g 136 (147)
+||.|..+||.+
T Consensus 3 ~C~~C~~~Cp~~ 14 (15)
T PF12798_consen 3 GCGACVEVCPTG 14 (15)
T ss_pred CchHHHHHhcCC
Confidence 456666666654
No 21
>PF12930 DUF3836: Family of unknown function (DUF3836); InterPro: IPR024339 This entry represents a family of bacterial proteins of unknown function.; PDB: 3MSW_A.
Probab=41.51 E-value=9.9 Score=29.30 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=0.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhcC
Q 037083 3 MMKIILTIAITMAITITLTMKG 24 (147)
Q Consensus 3 ~~k~~~~l~i~~al~~~~~~~~ 24 (147)
|||.+++++++++.++..++.+
T Consensus 6 ~~K~~v~~av~~~s~~~~~~~a 27 (132)
T PF12930_consen 6 FMKALVLSAVVAVSVLNTSASA 27 (132)
T ss_dssp ---------------------T
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 7888888777777766666544
No 22
>PF08087 Toxin_18: Conotoxin O-superfamily; InterPro: IPR012623 This family consists of members of the conotoxin O-superfamily. The O-superfamily of conotoxins consists of 3 groups of Conus peptides that belong to the same structural group. These 3 groups differ in their pharmacological properties: the w-conotoxins which inhibit calcium channels, the delta-conotoxins which slow down the inactivation rate of voltage -sensitive sodium channels and the muO-conotoxins block the voltage sensitive sodium currents [].
Probab=41.35 E-value=12 Score=22.64 Aligned_cols=18 Identities=33% Similarity=1.095 Sum_probs=14.1
Q ss_pred ccCCCCCccccCCccccC
Q 037083 102 KKKCKFTEACCRGQCVNL 119 (147)
Q Consensus 102 g~~C~~g~~CC~G~Cvdl 119 (147)
|+.|++...||.|.|...
T Consensus 7 GrnC~~~~ecCSGAcSa~ 24 (31)
T PF08087_consen 7 GRNCKYSYECCSGACSAA 24 (31)
T ss_pred CcccccchhhhcccchHH
Confidence 677888888998888543
No 23
>PHA02706 hypothetical protein; Provisional
Probab=41.04 E-value=30 Score=23.34 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=16.5
Q ss_pred CchHHHHHHHHHHHHHHHHHhh
Q 037083 1 MNMMKIILTIAITMAITITLTM 22 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~~~ 22 (147)
|+|-..+++|+|+|.|.-..|.
T Consensus 1 mq~e~tllviaiimmllgi~si 22 (58)
T PHA02706 1 MQFENTLLVIAIIMMLLGIASI 22 (58)
T ss_pred CcchhhhHHHHHHHHHHhhHHH
Confidence 7888888899998877654443
No 24
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=41.00 E-value=19 Score=28.10 Aligned_cols=18 Identities=17% Similarity=0.600 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 037083 4 MKIILTIAITMAITITLT 21 (147)
Q Consensus 4 ~k~~~~l~i~~al~~~~~ 21 (147)
||+|++|+|++.+.+.+.
T Consensus 1 MKll~~lilli~~~~~~~ 18 (212)
T PF11912_consen 1 MKLLISLILLILLIINFS 18 (212)
T ss_pred CcHHHHHHHHHHHHHhhh
Confidence 899888888876666654
No 25
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=39.67 E-value=13 Score=30.82 Aligned_cols=40 Identities=35% Similarity=0.651 Sum_probs=25.1
Q ss_pred CcchhcccCCCCCcc-cc----CCc-cccCccCCCcchhcCcCCCCC
Q 037083 96 KNCGACKKKCKFTEA-CC----RGQ-CVNLSFDKRHCGRCNNRCEKG 136 (147)
Q Consensus 96 ~NCG~Cg~~C~~g~~-CC----~G~-Cvdl~~D~~nCG~Cg~~C~~g 136 (147)
.+||.|.++|+.+.. =- ++. =+ ...+-.+||.|-.+||.+
T Consensus 204 ~~C~~C~~vCP~~~vl~~~~~~~~~~~i-~~~~C~~Cg~Cv~~CP~~ 249 (255)
T TIGR02163 204 TNCMDCFNVCPEPQVLRMPLKKGGSTLV-LSGDCTLCGRCIDVCHED 249 (255)
T ss_pred eEcCCccCcCCCCceeeccccCCCceEe-ccccccchhHHHHhCCcc
Confidence 379999999997641 00 010 11 123455899999999975
No 26
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=39.21 E-value=44 Score=22.61 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=9.5
Q ss_pred CchHHHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITMAI 16 (147)
Q Consensus 1 m~~~k~~~~l~i~~al 16 (147)
||.+.+++++++++..
T Consensus 1 ~~~l~~~l~~~v~~~~ 16 (85)
T TIGR02209 1 EKKLYVLLLLAILVSA 16 (85)
T ss_pred CchHHHHHHHHHHHHH
Confidence 6766666665555433
No 27
>PF08105 Antimicrobial10: Metchnikowin family; InterPro: IPR012513 This family consists of the metchnikowin family of antimicrobial peptides from Drosophila. metchnikowin is a proline-rich peptide whose expression is immune-inducible. Induction of the metchnikowin gene expression can be mediated either by the TOLL pathway or by the imd gene product. The metchnikowin peptide is unique among the Drosophila antimicrobial peptides in that it is active against both bacteria and fungi [].
Probab=38.94 E-value=42 Score=22.47 Aligned_cols=7 Identities=43% Similarity=0.415 Sum_probs=4.4
Q ss_pred CCcchhh
Q 037083 49 RGSRFLA 55 (147)
Q Consensus 49 r~srfLa 55 (147)
|+|.|=.
T Consensus 37 RPSPFNP 43 (52)
T PF08105_consen 37 RPSPFNP 43 (52)
T ss_pred CCCCCCC
Confidence 6777643
No 28
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=38.92 E-value=18 Score=30.19 Aligned_cols=41 Identities=27% Similarity=0.547 Sum_probs=24.7
Q ss_pred CcchhcccCCCCCcccc---CCc---cccCccCCCcchhcCcCCCCC
Q 037083 96 KNCGACKKKCKFTEACC---RGQ---CVNLSFDKRHCGRCNNRCEKG 136 (147)
Q Consensus 96 ~NCG~Cg~~C~~g~~CC---~G~---Cvdl~~D~~nCG~Cg~~C~~g 136 (147)
.+||.|.++|+.+..=- .+. =+-...+-.+||.|-.+||.+
T Consensus 211 ~~C~~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~ 257 (271)
T PRK09477 211 TRCMDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSED 257 (271)
T ss_pred cccCCcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCcc
Confidence 37899999998764321 010 000123345799999999975
No 29
>PF12354 Internalin_N: Bacterial adhesion/invasion protein N terminal; PDB: 2OMT_A 1H6U_A 3RFS_A 3RFJ_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=38.48 E-value=13 Score=25.01 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 037083 3 MMKIILTIAITMAITITLTMKGIGEAEE 30 (147)
Q Consensus 3 ~~k~~~~l~i~~al~~~~~~~~~~~~e~ 30 (147)
.+|.++++++++.+++-+..+..++.+.
T Consensus 6 ~lk~~l~~~lv~~i~~~i~~~~~~~v~A 33 (57)
T PF12354_consen 6 WLKNLLILLLVIIISIWIGTSNGTKVQA 33 (57)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcceeec
Confidence 5666666666666665444433333333
No 30
>PF05436 MF_alpha_N: Mating factor alpha precursor N-terminus; InterPro: IPR008675 This entry contains the N-terminal regions of the Saccharomyces mating factor alpha precursor protein. All proteins in this family contain one or more copies of IPR006742 from INTERPRO further toward their C terminus.; GO: 0007618 mating, 0005576 extracellular region
Probab=38.38 E-value=34 Score=25.06 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=8.2
Q ss_pred CchHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITM 14 (147)
Q Consensus 1 m~~~k~~~~l~i~~ 14 (147)
|||..+|..++++.
T Consensus 1 MKf~siLsa~ala~ 14 (86)
T PF05436_consen 1 MKFSSILSAAALAS 14 (86)
T ss_pred CchHHHHHHHHHHH
Confidence 77776665544433
No 31
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=38.02 E-value=28 Score=21.68 Aligned_cols=12 Identities=8% Similarity=0.448 Sum_probs=7.7
Q ss_pred CchHHHHHHHHH
Q 037083 1 MNMMKIILTIAI 12 (147)
Q Consensus 1 m~~~k~~~~l~i 12 (147)
||.+.+.|++.+
T Consensus 1 Mk~l~~a~~l~l 12 (36)
T PF08194_consen 1 MKCLSLAFALLL 12 (36)
T ss_pred CceeHHHHHHHH
Confidence 888877555443
No 32
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=37.83 E-value=42 Score=24.01 Aligned_cols=7 Identities=14% Similarity=0.358 Sum_probs=3.2
Q ss_pred ccccccc
Q 037083 66 HCHKDNE 72 (147)
Q Consensus 66 ~C~~~~~ 72 (147)
.|.-+|+
T Consensus 63 ~C~~NP~ 69 (82)
T PF12071_consen 63 YCGINPR 69 (82)
T ss_pred ccccCcC
Confidence 4444443
No 33
>smart00289 WR1 Worm-specific repeat type 1. Worm-specific repeat type 1. Cysteine-rich domain apparently unique (so far) to C. elegans. Often appears with KU domains. About 3 dozen worm proteins contain this domain.
Probab=37.29 E-value=29 Score=20.10 Aligned_cols=26 Identities=31% Similarity=0.735 Sum_probs=19.4
Q ss_pred cCccCCCcchhcCcCCCCCCccCC---cee
Q 037083 118 NLSFDKRHCGRCNNRCEKGQFCVY---GMC 144 (147)
Q Consensus 118 dl~~D~~nCG~Cg~~C~~g~~C~~---G~C 144 (147)
+....+..|-. ...||.|..|.+ ++|
T Consensus 8 ~~~~~~~~C~~-~~~CP~g~~C~~~~~~~C 36 (38)
T smart00289 8 DLGGSPVRCSP-NGSCPSGYSCQNSKQGIC 36 (38)
T ss_pred cCCCCCeECCC-CCCCCCCCEEecCCCccc
Confidence 45566667777 788998888888 666
No 34
>TIGR02184 Myco_arth_vir_N Mycoplasma virulence family signal region. This model represents the N-terminal region, including a probable signal sequence or signal anchor which in most instances has four consecutive Lys residues before the hydrophobic stretch, of a family of large, virulence-associated proteins in Mycoplasma arthritidis and smaller proteins in Mycoplasma capricolum.
Probab=37.16 E-value=21 Score=21.90 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 037083 7 ILTIAITMAITITLTM 22 (147)
Q Consensus 7 ~~~l~i~~al~~~~~~ 22 (147)
|++++++.+++++++.
T Consensus 11 Il~~al~a~l~~S~s~ 26 (33)
T TIGR02184 11 IATLVIVTSLLTSLTI 26 (33)
T ss_pred eehHHHHHHHHHhhee
Confidence 4555666666655554
No 35
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=35.93 E-value=26 Score=28.33 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=17.0
Q ss_pred CchHHHHHHHHHHHHHHHHHh
Q 037083 1 MNMMKIILTIAITMAITITLT 21 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~~ 21 (147)
||+.++++++++++++.+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~a~ 21 (181)
T PRK13728 1 MSLTKLLLVLLLLMATAVQAS 21 (181)
T ss_pred CchhHHHHHHHHHHhhhhccc
Confidence 899999999888887766544
No 36
>PF04060 FeS: Putative Fe-S cluster; InterPro: IPR007202 These proteins contain a domain with four conserved cysteines that probably form an Fe-S redox cluster.; GO: 0051536 iron-sulfur cluster binding; PDB: 2YCL_A 4DJF_E 4DJD_C 4DJE_C.
Probab=35.82 E-value=13 Score=22.39 Aligned_cols=10 Identities=50% Similarity=1.072 Sum_probs=3.8
Q ss_pred CCcchhcccC
Q 037083 95 DKNCGACKKK 104 (147)
Q Consensus 95 ~~NCG~Cg~~ 104 (147)
..|||+||-.
T Consensus 4 ~~nCg~CG~~ 13 (35)
T PF04060_consen 4 GTNCGACGYP 13 (35)
T ss_dssp S----TTSSS
T ss_pred CCcCCCCCCc
Confidence 3578888754
No 37
>PF05538 Campylo_MOMP: Campylobacter major outer membrane protein; InterPro: IPR008439 Campylobacter are Gram-negative, spiral, microaerophilic bacteria. Campylobacter jejuni is one of the main causative agents of food poisoning in the developed world. This family consists of Campylobacter major outer membrane proteins. The major outer membrane protein (MOMP), a putative porin and a multifunction surface protein of Campylobacter jejuni, may play an important role in the adaptation of the organism to various host environments [].
Probab=35.65 E-value=23 Score=32.62 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=11.4
Q ss_pred CchHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITM 14 (147)
Q Consensus 1 m~~~k~~~~l~i~~ 14 (147)
|||.|+.++-++++
T Consensus 1 MKl~KlSLaAavA~ 14 (431)
T PF05538_consen 1 MKLVKLSLAAAVAL 14 (431)
T ss_pred CchHHHHHHHHHHh
Confidence 99999988866665
No 38
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=35.37 E-value=12 Score=27.44 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=0.0
Q ss_pred Cc-hHHHHHHHHHHHHHHHHHh
Q 037083 1 MN-MMKIILTIAITMAITITLT 21 (147)
Q Consensus 1 m~-~~k~~~~l~i~~al~~~~~ 21 (147)
|+ +.|++++|+++++|++...
T Consensus 1 M~~~kk~l~~~l~~~~la~~~~ 22 (144)
T PF12869_consen 1 MKILKKILIIILILIVLAFIIA 22 (144)
T ss_dssp ----------------------
T ss_pred CchhhhHHHHHHHHHHHHHHHh
Confidence 77 4555555555544444333
No 39
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=35.04 E-value=41 Score=25.17 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=13.8
Q ss_pred CchHHHHHHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITMAITIT 19 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~ 19 (147)
|.+||.++.|+++++|+..
T Consensus 2 ~~~mk~~~~l~~~l~LS~~ 20 (104)
T PRK14864 2 NMVMRRFASLLLTLLLSAC 20 (104)
T ss_pred chHHHHHHHHHHHHHHhhh
Confidence 6678888877777766643
No 40
>PF15240 Pro-rich: Proline-rich
Probab=34.80 E-value=31 Score=28.33 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 037083 4 MKIILTIAITMAITITLTMKGI 25 (147)
Q Consensus 4 ~k~~~~l~i~~al~~~~~~~~~ 25 (147)
|.+||+.|.+|||+.|=.+...
T Consensus 1 MLlVLLSvALLALSSAQ~~dEd 22 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDED 22 (179)
T ss_pred ChhHHHHHHHHHhhhccccccc
Confidence 4566666888889988777543
No 41
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=34.57 E-value=60 Score=21.41 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 037083 5 KIILTIAITMAITITLT 21 (147)
Q Consensus 5 k~~~~l~i~~al~~~~~ 21 (147)
|+|.+|+.++++++.++
T Consensus 4 k~i~~i~~~l~~~~~l~ 20 (48)
T PRK10081 4 KTIAAIFSVLVLSTVLT 20 (48)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444444444
No 42
>PRK12450 foldase protein PrsA; Reviewed
Probab=34.45 E-value=44 Score=28.52 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=13.6
Q ss_pred CchHHHHHHHHHHHHHHHHHhhc
Q 037083 1 MNMMKIILTIAITMAITITLTMK 23 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~~~~ 23 (147)
||-||.++++++++++++.+++-
T Consensus 1 m~~~kk~i~~~~~~~~~~~l~gc 23 (309)
T PRK12450 1 MKQMNKLITGVVTLATVVTLSAC 23 (309)
T ss_pred CchHHHHHHHHHHHHHHHHHHhc
Confidence 77666665556665555555443
No 43
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=34.10 E-value=39 Score=28.41 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=14.8
Q ss_pred CchHHHHHHHHHHHHHHHHHhh
Q 037083 1 MNMMKIILTIAITMAITITLTM 22 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~~~ 22 (147)
|+++|.+++++++.++++++.+
T Consensus 1 ~~~~~~~~~~~~~~~l~~~~~g 22 (336)
T PRK00059 1 MKSIKKLVASLLVGVFIFSAVG 22 (336)
T ss_pred CchHHHHHHHHHHHHHHHhhcc
Confidence 8888888776666555554443
No 44
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=33.30 E-value=13 Score=24.35 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=6.6
Q ss_pred CchHHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITMA 15 (147)
Q Consensus 1 m~~~k~~~~l~i~~a 15 (147)
|| ||+|++.++++
T Consensus 1 Mk--Ki~~~~i~~~~ 13 (46)
T PF02402_consen 1 MK--KIIFIGIFLLT 13 (46)
T ss_pred Cc--EEEEeHHHHHH
Confidence 56 55555444444
No 45
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=32.26 E-value=31 Score=29.80 Aligned_cols=39 Identities=21% Similarity=0.467 Sum_probs=24.9
Q ss_pred CcchhcccCCCCCccccCCc------------cc---------cCccCCCcchhcCcCCCCC
Q 037083 96 KNCGACKKKCKFTEACCRGQ------------CV---------NLSFDKRHCGRCNNRCEKG 136 (147)
Q Consensus 96 ~NCG~Cg~~C~~g~~CC~G~------------Cv---------dl~~D~~nCG~Cg~~C~~g 136 (147)
-+||.|-++|+..+. .+. =. +....-..||.|..+||.+
T Consensus 8 i~Cg~C~~~Cp~~~~--~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~C~~C~~~CP~~ 67 (397)
T TIGR03379 8 IKCTVCTVYCPVAKA--NPLYPGPKQAGPDGERLRLKSAELYDEALKYCTNCKRCEVACPSD 67 (397)
T ss_pred CCCCCCcccCcCccc--cCCccCcccCCcHHHHHhcccchhcccccccCcCcCccchhcCCC
Confidence 379999999997643 100 00 1112234699999999986
No 46
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=31.87 E-value=45 Score=23.66 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=15.1
Q ss_pred CchHHHHHHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITMAITIT 19 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~ 19 (147)
||+.|+++++++++++-+-
T Consensus 1 MKi~kv~~ff~~Ll~i~~l 19 (84)
T PF09716_consen 1 MKISKVFYFFAFLLAINLL 19 (84)
T ss_pred CcHHHHHHHHHHHHHHHhC
Confidence 8999998888888776543
No 47
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=31.43 E-value=52 Score=28.02 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=14.3
Q ss_pred Cc-hHHHHHHHHHHHHHHHHHhh
Q 037083 1 MN-MMKIILTIAITMAITITLTM 22 (147)
Q Consensus 1 m~-~~k~~~~l~i~~al~~~~~~ 22 (147)
|+ .||.+++++++++++++++.
T Consensus 1 ~~~~~kk~~~~~~~~~~~~~l~g 23 (298)
T PRK04405 1 MKKKMKKWALAAASAGLALSLAG 23 (298)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh
Confidence 44 77777777777666555554
No 48
>PF10916 DUF2712: Protein of unknown function (DUF2712); InterPro: IPR020208 This entry represents a group of uncharacterised proteins.
Probab=30.68 E-value=67 Score=25.67 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 037083 3 MMKIILTIAITMAITI 18 (147)
Q Consensus 3 ~~k~~~~l~i~~al~~ 18 (147)
|+|..+-|+|++++.|
T Consensus 4 f~~~~~~~~~a~~~~~ 19 (146)
T PF10916_consen 4 FAKKNVRLILAAAIGI 19 (146)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5665555555444444
No 49
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=30.65 E-value=48 Score=25.97 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=16.8
Q ss_pred CchHHHHHHHHHHHHHHHHHh
Q 037083 1 MNMMKIILTIAITMAITITLT 21 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~~ 21 (147)
||+..+++++++++..++|..
T Consensus 1 mK~~~ia~~~~L~s~~alA~~ 21 (128)
T COG3111 1 MKKQAIAALIALVSTPALAAD 21 (128)
T ss_pred CchHHHHHHHHHhhhHHHhhh
Confidence 888888888888887777665
No 50
>COG5510 Predicted small secreted protein [Function unknown]
Probab=30.45 E-value=73 Score=20.73 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 037083 4 MKIILTIAITMAITITLTM 22 (147)
Q Consensus 4 ~k~~~~l~i~~al~~~~~~ 22 (147)
+|.+++++++++.++.+++
T Consensus 3 k~t~l~i~~vll~s~llaa 21 (44)
T COG5510 3 KKTILLIALVLLASTLLAA 21 (44)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4545555555544444443
No 51
>PF09065 Haemadin: Haemadin; InterPro: IPR015150 Members of this family adopt a secondary structure consisting of five short beta-strands (beta1-beta5), which are arranged in two antiparallel distorted sheets formed by strands beta1-beta4-beta5 and beta2-beta3 facing each other. This beta-sandwich is stabilised by six enclosed cysteines arranged in a [1-2, 3-5, 4-6] disulphide pairing resulting in a disulphide-rich hydrophobic core that is largely inaccessible to bulk solvent. The close proximity of disulphide bonds [3-5] and [4-6] organises haemadin into four distinct loops. The N-terminal segment of this domain binds to the active site of thrombin, inhibiting it []. ; PDB: 1E0F_K.
Probab=30.00 E-value=15 Score=21.34 Aligned_cols=15 Identities=40% Similarity=0.791 Sum_probs=8.3
Q ss_pred cCCCCCCccCCceec
Q 037083 131 NRCEKGQFCVYGMCD 145 (147)
Q Consensus 131 ~~C~~g~~C~~G~C~ 145 (147)
+.|-.||+|..|+|+
T Consensus 6 kiclygqscndgqcs 20 (27)
T PF09065_consen 6 KICLYGQSCNDGQCS 20 (27)
T ss_dssp SEE-TTEEESSS-EE
T ss_pred eeeEecccccCCccc
Confidence 456666777777664
No 52
>PRK13681 hypothetical protein; Provisional
Probab=29.73 E-value=53 Score=20.41 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=10.7
Q ss_pred CchHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITM 14 (147)
Q Consensus 1 m~~~k~~~~l~i~~ 14 (147)
|++.|+.+|.++++
T Consensus 1 M~~~K~~~i~lfal 14 (35)
T PRK13681 1 MRIAKIGVIALFLL 14 (35)
T ss_pred CcHHHHHHHHHHHH
Confidence 88889888866554
No 53
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=29.64 E-value=57 Score=23.71 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=11.8
Q ss_pred chHHHHHHHHHHHHHHHHHh
Q 037083 2 NMMKIILTIAITMAITITLT 21 (147)
Q Consensus 2 ~~~k~~~~l~i~~al~~~~~ 21 (147)
++-|.|.+++.+.+++++..
T Consensus 14 ~~WkkiS~~va~P~v~l~~~ 33 (86)
T cd00925 14 ELWKKISFYVALPAVALCML 33 (86)
T ss_pred hhhhhhhhhhHHHHHHHHHH
Confidence 45566666666666555444
No 54
>PF05782 ECM1: Extracellular matrix protein 1 (ECM1); InterPro: IPR008605 This family consists of several eukaryotic extracellular matrix protein 1 (ECM1) sequences. ECM1 has been shown to regulate endochondral bone formation, stimulate the proliferation of endothelial cells and induce angiogenesis. Mutations in the ECM1 gene can cause lipoid proteinosis, a disorder which causes generalised thickening of skin, mucosae and certain viscera. Classical features include beaded eyelid papules and laryngeal infiltration leading to hoarseness [].; GO: 0005576 extracellular region
Probab=29.41 E-value=94 Score=29.47 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhhc
Q 037083 1 MNMMKIILTIAITMAITITLTMK 23 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~~~~ 23 (147)
|..|..+.+|++.|||+.++|..
T Consensus 1 MGt~srAALvLacLAvaSaASeG 23 (544)
T PF05782_consen 1 MGTMSRAALVLACLAVASAASEG 23 (544)
T ss_pred CchHHHHHHHHHHHHHHHHhhcC
Confidence 77788888888888888777743
No 55
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=29.40 E-value=14 Score=20.22 Aligned_cols=12 Identities=42% Similarity=1.077 Sum_probs=6.8
Q ss_pred cchhcCcCCCCC
Q 037083 125 HCGRCNNRCEKG 136 (147)
Q Consensus 125 nCG~Cg~~C~~g 136 (147)
+||.|-..||.+
T Consensus 10 ~Cg~C~~~CP~~ 21 (24)
T PF00037_consen 10 GCGRCVEACPFD 21 (24)
T ss_dssp S-THHHHHSTTS
T ss_pred Ccchhhhhcccc
Confidence 566666666654
No 56
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=29.24 E-value=39 Score=17.69 Aligned_cols=14 Identities=36% Similarity=1.025 Sum_probs=9.7
Q ss_pred CCCCCccCCc-eecC
Q 037083 133 CEKGQFCVYG-MCDY 146 (147)
Q Consensus 133 C~~g~~C~~G-~C~y 146 (147)
|..|..|.+| .|.|
T Consensus 2 Ck~~~~C~~~~~C~f 16 (19)
T PF14608_consen 2 CKFGPNCTNGDNCPF 16 (19)
T ss_pred CcCcCCCCCCCcCcc
Confidence 5666667777 7766
No 57
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=28.49 E-value=35 Score=22.56 Aligned_cols=31 Identities=29% Similarity=0.867 Sum_probs=17.5
Q ss_pred CccccCccCCCcchhcCcCCCCCCccCCceec
Q 037083 114 GQCVNLSFDKRHCGRCNNRCEKGQFCVYGMCD 145 (147)
Q Consensus 114 G~Cvdl~~D~~nCG~Cg~~C~~g~~C~~G~C~ 145 (147)
+.|..-..-.++|=+ ...|-+|+.|++|+|.
T Consensus 21 ~~C~~Cr~~~~rC~R-d~~CC~g~~CvnG~C~ 51 (52)
T PF04706_consen 21 SKCLPCRKRRKRCTR-DAMCCPGNLCVNGVCT 51 (52)
T ss_pred ccChhhccCCCCCCC-CcccCCCCeeeCCEec
Confidence 344444444444443 4455567788888775
No 58
>PF07403 DUF1505: Protein of unknown function (DUF1505); InterPro: IPR009981 This family consists of several uncharacterised Caenorhabditis elegans proteins of around 115 resides in length. Members of this family contain 6 highly conserved cysteine residues. The function of this family is unknown.
Probab=27.79 E-value=34 Score=26.27 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhhcCC
Q 037083 10 IAITMAITITLTMKGI 25 (147)
Q Consensus 10 l~i~~al~~~~~~~~~ 25 (147)
.+|++++++|+.+.++
T Consensus 7 ~vl~lsv~vA~~~~~~ 22 (114)
T PF07403_consen 7 TVLLLSVTVALASTSP 22 (114)
T ss_pred hHHHHHHHHHhcCCCc
Confidence 3444444444444333
No 59
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=27.72 E-value=55 Score=23.59 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=14.3
Q ss_pred CchHHHHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITMAIT 17 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~ 17 (147)
||+-|+++.+++++++-
T Consensus 1 MKisKi~~f~~~Ll~in 17 (85)
T TIGR01495 1 MKVSKILYFFAALLAIN 17 (85)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 89999999888888764
No 60
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=27.50 E-value=65 Score=29.27 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=11.0
Q ss_pred Cc-hHHHHHHHHHHHHHHH
Q 037083 1 MN-MMKIILTIAITMAITI 18 (147)
Q Consensus 1 m~-~~k~~~~l~i~~al~~ 18 (147)
|| ++|+++++++++.+++
T Consensus 1 Mkk~lki~~~~l~~lvll~ 19 (604)
T PF05170_consen 1 MKKLLKILLIILAVLVLLV 19 (604)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 77 5777766655554444
No 61
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=27.26 E-value=89 Score=20.48 Aligned_cols=7 Identities=29% Similarity=0.828 Sum_probs=3.6
Q ss_pred CCCcccc
Q 037083 32 NLPLEQH 38 (147)
Q Consensus 32 ~~p~~~~ 38 (147)
..||+++
T Consensus 38 rDPFeeH 44 (46)
T PRK13183 38 DDPFDDH 44 (46)
T ss_pred CCchhhc
Confidence 4566443
No 62
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=26.95 E-value=78 Score=19.65 Aligned_cols=40 Identities=30% Similarity=0.710 Sum_probs=23.3
Q ss_pred CCCCccccCCccccCccCCCcchhcCcCCCCCCccCCceec
Q 037083 105 CKFTEACCRGQCVNLSFDKRHCGRCNNRCEKGQFCVYGMCD 145 (147)
Q Consensus 105 C~~g~~CC~G~Cvdl~~D~~nCG~Cg~~C~~g~~C~~G~C~ 145 (147)
|..+++--+|+|+....-...|- =+..|..+..|+.|.|.
T Consensus 1 C~~~~~~~~~~C~~~~~~g~~C~-~~~qC~~~s~C~~g~C~ 40 (52)
T PF01683_consen 1 CPSGQVAINGQCVPRVQPGESCE-SDEQCIGGSVCVNGRCQ 40 (52)
T ss_pred CCCCCEEECCEECccCCCCCCCC-CcCCCCCcCEEcCCEeE
Confidence 44455555666666544444443 24556677778887774
No 63
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=26.75 E-value=62 Score=24.20 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=11.3
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 037083 2 NMMKIILTIAITMAITITL 20 (147)
Q Consensus 2 ~~~k~~~~l~i~~al~~~~ 20 (147)
++|-.++||+|++++++..
T Consensus 7 EllivlaIigil~~i~~p~ 25 (134)
T TIGR01710 7 EIMVVLVILGLLAALVAPK 25 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655543
No 64
>PRK04517 hypothetical protein; Provisional
Probab=26.74 E-value=46 Score=27.29 Aligned_cols=14 Identities=14% Similarity=0.130 Sum_probs=9.7
Q ss_pred CchHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITM 14 (147)
Q Consensus 1 m~~~k~~~~l~i~~ 14 (147)
||+|+.++++++++
T Consensus 1 MK~~~~~~~~~~l~ 14 (216)
T PRK04517 1 MKPIKPLTCLLALC 14 (216)
T ss_pred CCchHHHHHHHHHH
Confidence 89877777655444
No 65
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=26.73 E-value=57 Score=28.00 Aligned_cols=41 Identities=20% Similarity=0.443 Sum_probs=25.1
Q ss_pred CcchhcccCCCCCccc---cCCc----------------cccCccCCCcchhcCcCCCCC
Q 037083 96 KNCGACKKKCKFTEAC---CRGQ----------------CVNLSFDKRHCGRCNNRCEKG 136 (147)
Q Consensus 96 ~NCG~Cg~~C~~g~~C---C~G~----------------Cvdl~~D~~nCG~Cg~~C~~g 136 (147)
.+||.|-++|+..+.= -+.. -......=.+||.|...||.+
T Consensus 10 i~Cg~C~~~CP~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~ 69 (396)
T PRK11168 10 IKCTVCTTACPVARVNPLYPGPKQAGPDGERLRLKDGALYDESLKYCSNCKRCEVACPSG 69 (396)
T ss_pred CCCCCCCccCCCcccCCCCCChhhhccHHHHHhccchhhcCCCCCcCcCcCccCcccCCC
Confidence 3788888888877420 0001 111223445799999999986
No 66
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=26.02 E-value=21 Score=25.02 Aligned_cols=7 Identities=14% Similarity=0.506 Sum_probs=3.9
Q ss_pred Ccchhhh
Q 037083 50 GSRFLAE 56 (147)
Q Consensus 50 ~srfLa~ 56 (147)
+.+|+-.
T Consensus 43 re~ff~~ 49 (66)
T PF10907_consen 43 REKFFGG 49 (66)
T ss_pred HHHHcCC
Confidence 4567653
No 67
>PRK01904 hypothetical protein; Provisional
Probab=25.96 E-value=68 Score=26.31 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=8.1
Q ss_pred CchHHHHHHHHHH
Q 037083 1 MNMMKIILTIAIT 13 (147)
Q Consensus 1 m~~~k~~~~l~i~ 13 (147)
||++++++.++++
T Consensus 1 MK~~~~~~~~~~l 13 (219)
T PRK01904 1 MKLRKAALAVATL 13 (219)
T ss_pred CchhHHHHHHHHH
Confidence 8887766554433
No 68
>COG3470 Tpd Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]
Probab=25.89 E-value=76 Score=26.04 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=14.9
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITMAITITL 20 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~ 20 (147)
|+++|+++-.+|++++..+.
T Consensus 1 M~~~k~l~~~~~~a~v~s~~ 20 (179)
T COG3470 1 MKMKKLLLSAAILASVFSAP 20 (179)
T ss_pred CchHHHHHHHHHHHHHHhhh
Confidence 89999998877777665543
No 69
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.47 E-value=63 Score=23.71 Aligned_cols=10 Identities=30% Similarity=0.384 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 037083 5 KIILTIAITM 14 (147)
Q Consensus 5 k~~~~l~i~~ 14 (147)
|.+++++++|
T Consensus 2 Kk~~ll~~~l 11 (114)
T PF11777_consen 2 KKIILLASLL 11 (114)
T ss_pred chHHHHHHHH
Confidence 3333333333
No 70
>MTH00203 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=25.08 E-value=1.3e+02 Score=22.02 Aligned_cols=18 Identities=22% Similarity=0.617 Sum_probs=10.2
Q ss_pred CchHHHHHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITMAITI 18 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~ 18 (147)
|++|-+.+++++++++.+
T Consensus 1 m~~~~~~~~~~~~~~~~~ 18 (112)
T MTH00203 1 MNLIMLFFLIALLLSLIL 18 (112)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 666666666555444443
No 71
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=24.92 E-value=85 Score=18.03 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=6.2
Q ss_pred chHHHHHHHHHHH
Q 037083 2 NMMKIILTIAITM 14 (147)
Q Consensus 2 ~~~k~~~~l~i~~ 14 (147)
++||.|+++++++
T Consensus 5 ~mmKkil~~l~a~ 17 (25)
T PF08139_consen 5 SMMKKILFPLLAL 17 (25)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555444443
No 72
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=24.73 E-value=29 Score=28.85 Aligned_cols=15 Identities=40% Similarity=0.866 Sum_probs=11.1
Q ss_pred ccCCCcchhcccCCC
Q 037083 92 STDDKNCGACKKKCK 106 (147)
Q Consensus 92 ~tD~~NCG~Cg~~C~ 106 (147)
..|..|||+||-.|.
T Consensus 147 lp~~lnCg~CG~~C~ 161 (229)
T PRK14494 147 LPYNLNCGHCGFNCK 161 (229)
T ss_pred CCCCCCCCccCcCHH
Confidence 345789999996553
No 73
>smart00608 ACR ADAM Cysteine-Rich Domain.
Probab=24.68 E-value=45 Score=25.54 Aligned_cols=18 Identities=39% Similarity=0.887 Sum_probs=16.0
Q ss_pred ccCCCCCccccCCccccC
Q 037083 102 KKKCKFTEACCRGQCVNL 119 (147)
Q Consensus 102 g~~C~~g~~CC~G~Cvdl 119 (147)
|.+|..+.+|-+++||++
T Consensus 120 GT~CG~~kvC~n~~Cv~~ 137 (137)
T smart00608 120 GTKCGPGKVCINGQCVDV 137 (137)
T ss_pred CCCcCCCCccCCCCcccC
Confidence 689999999999999974
No 74
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=24.55 E-value=35 Score=28.12 Aligned_cols=39 Identities=31% Similarity=0.776 Sum_probs=22.9
Q ss_pred cchhcccCCCCCcccc----CCccccCc---cCCCcchhcCcCCCCC
Q 037083 97 NCGACKKKCKFTEACC----RGQCVNLS---FDKRHCGRCNNRCEKG 136 (147)
Q Consensus 97 NCG~Cg~~C~~g~~CC----~G~Cvdl~---~D~~nCG~Cg~~C~~g 136 (147)
+||.|-.+|+.+..=- .+. .... ..-..||.|-.+||.+
T Consensus 52 ~C~~C~~~Cp~~a~~~~~~~~~~-~~~~~~~~~C~~Cg~C~~~CP~~ 97 (295)
T TIGR02494 52 GCGKCVEVCPAGTARLSELADGR-NRIIIRREKCTHCGKCTEACPSG 97 (295)
T ss_pred CCchhhhhCcccccccccccCCC-cceeechhhcCchhHhhccCcHh
Confidence 7899999999774210 000 0001 1124688888999865
No 75
>COG3137 Putative salt-induced outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=24.45 E-value=55 Score=28.30 Aligned_cols=10 Identities=30% Similarity=0.378 Sum_probs=7.5
Q ss_pred CCCCccccch
Q 037083 31 NNLPLEQHTE 40 (147)
Q Consensus 31 ~~~p~~~~~~ 40 (147)
.+.||++++|
T Consensus 46 ~kspw~gsve 55 (262)
T COG3137 46 AKSPWEGSVE 55 (262)
T ss_pred cCCccccccc
Confidence 3669988777
No 76
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=24.00 E-value=95 Score=23.16 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 037083 4 MKIILTIAITMAITITLT 21 (147)
Q Consensus 4 ~k~~~~l~i~~al~~~~~ 21 (147)
+-.||.|++++.+++.++
T Consensus 3 Ll~il~llLll~l~asl~ 20 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLL 20 (107)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555565655555
No 77
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=23.42 E-value=1e+02 Score=21.38 Aligned_cols=15 Identities=47% Similarity=0.565 Sum_probs=6.4
Q ss_pred CchHHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITMA 15 (147)
Q Consensus 1 m~~~k~~~~l~i~~a 15 (147)
||=.|++++++++++
T Consensus 1 MKK~kii~iii~li~ 15 (85)
T PF11337_consen 1 MKKKKIILIIIILIV 15 (85)
T ss_pred CCchHHHHHHHHHHH
Confidence 553344444433333
No 78
>PF09610 Myco_arth_vir_N: Mycoplasma virulence signal region (Myco_arth_vir_N); InterPro: IPR011732 This entry represents the N-terminal region of a family of large, virulence-associated proteins in Mycoplasma arthritidis and smaller proteins in Mycoplasma capricolum. It includes a probable signal sequence or signal anchor, which, in most instances, has four consecutive Lys residues before the hydrophobic stretch.
Probab=23.09 E-value=45 Score=20.47 Aligned_cols=16 Identities=31% Similarity=0.465 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 037083 7 ILTIAITMAITITLTM 22 (147)
Q Consensus 7 ~~~l~i~~al~~~~~~ 22 (147)
|++++++.+|+.++++
T Consensus 11 Il~la~~a~l~as~s~ 26 (33)
T PF09610_consen 11 ILTLALTASLLASGSF 26 (33)
T ss_pred hhhHHHHHHHHHceee
Confidence 4455555555555554
No 79
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=22.98 E-value=1.1e+02 Score=20.89 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=15.9
Q ss_pred CchHHHHHHHHHHHHHHHHHhh
Q 037083 1 MNMMKIILTIAITMAITITLTM 22 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~~~ 22 (147)
||++-++++++|+.+|..++-.
T Consensus 1 ~Ki~iv~lll~ii~sL~saL~~ 22 (63)
T PF11137_consen 1 MKILIVLLLLAIIASLFSALFF 22 (63)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777776665
No 80
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=22.32 E-value=1.5e+02 Score=20.11 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCC
Q 037083 3 MMKIILTIAITMAITITLTMKGI 25 (147)
Q Consensus 3 ~~k~~~~l~i~~al~~~~~~~~~ 25 (147)
.+|+++.++|-|.|.+++..-+.
T Consensus 26 iik~vismimylilGi~L~yis~ 48 (54)
T PF04835_consen 26 IIKSVISMIMYLILGIALIYISS 48 (54)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 46777777777777777766443
No 81
>PRK11636 mrcA penicillin-binding protein 1a; Provisional
Probab=22.15 E-value=89 Score=30.87 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=12.9
Q ss_pred CchHHHHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITMAIT 17 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~ 17 (147)
||++|++|++++.+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (850)
T PRK11636 1 MKFVKYLLILAVCCILL 17 (850)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 89999888877766544
No 82
>CHL00020 psbN photosystem II protein N
Probab=22.12 E-value=99 Score=20.00 Aligned_cols=7 Identities=43% Similarity=0.819 Sum_probs=3.6
Q ss_pred CCCcccc
Q 037083 32 NLPLEQH 38 (147)
Q Consensus 32 ~~p~~~~ 38 (147)
..||+++
T Consensus 35 rDPfeeH 41 (43)
T CHL00020 35 RDPFEEH 41 (43)
T ss_pred CCchhhc
Confidence 4566443
No 83
>PRK15205 long polar fimbrial protein LpfE; Provisional
Probab=21.85 E-value=77 Score=24.55 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=10.1
Q ss_pred CchHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITM 14 (147)
Q Consensus 1 m~~~k~~~~l~i~~ 14 (147)
||+.|+++.+++++
T Consensus 1 m~~~~~~~~~~~~~ 14 (176)
T PRK15205 1 MKNKRALLPLALLL 14 (176)
T ss_pred CchHHHHHHHHHHh
Confidence 88888777666664
No 84
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=21.81 E-value=1.1e+02 Score=20.50 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 037083 4 MKIILTIAITMAITITLTM 22 (147)
Q Consensus 4 ~k~~~~l~i~~al~~~~~~ 22 (147)
||++.+|+-++.|++-+-+
T Consensus 1 MRTL~LLaAlLLlAlqaQA 19 (52)
T PF00879_consen 1 MRTLALLAALLLLALQAQA 19 (52)
T ss_pred CcHHHHHHHHHHHHHHHhc
Confidence 3455555544444544444
No 85
>PF01599 Ribosomal_S27: Ribosomal protein S27a; InterPro: IPR002906 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesized as a C-terminal extension of ubiquitin (CEP) (IPR000626 from INTERPRO). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis []. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2K4X_A 3U5C_f 3U5G_f 2XZN_9 2XZM_9.
Probab=21.22 E-value=40 Score=22.02 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=9.3
Q ss_pred ccccCCCcchhccc
Q 037083 90 DLSTDDKNCGACKK 103 (147)
Q Consensus 90 d~~tD~~NCG~Cg~ 103 (147)
.--.|+..||.||-
T Consensus 33 A~H~dR~~CGKCg~ 46 (47)
T PF01599_consen 33 AEHKDRHYCGKCGY 46 (47)
T ss_dssp EE-SSEEEETTTSS
T ss_pred eecCCCccCCCccc
Confidence 44568888888873
No 86
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=21.19 E-value=53 Score=16.73 Aligned_cols=9 Identities=44% Similarity=1.420 Sum_probs=4.9
Q ss_pred chhcCcCCC
Q 037083 126 CGRCNNRCE 134 (147)
Q Consensus 126 CG~Cg~~C~ 134 (147)
||.|-.+||
T Consensus 7 C~~C~~~Cp 15 (17)
T PF12800_consen 7 CGSCVDVCP 15 (17)
T ss_dssp SSSSTTTST
T ss_pred CchHHhhcc
Confidence 555555554
No 87
>PRK09810 entericidin A; Provisional
Probab=21.09 E-value=1e+02 Score=19.56 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 037083 4 MKIILTIAITM 14 (147)
Q Consensus 4 ~k~~~~l~i~~ 14 (147)
||.+++++++.
T Consensus 2 Mkk~~~l~~~~ 12 (41)
T PRK09810 2 MKRLIVLVLLA 12 (41)
T ss_pred hHHHHHHHHHH
Confidence 45555444433
No 88
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=21.00 E-value=33 Score=29.60 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 037083 5 KIILTIAITMAITITLTM 22 (147)
Q Consensus 5 k~~~~l~i~~al~~~~~~ 22 (147)
|+-+|++|+.||+|++.+
T Consensus 4 kvtlivaivaalaisaha 21 (311)
T PF12782_consen 4 KVTLIVAIVAALAISAHA 21 (311)
T ss_pred eEEehHHHHHHHHHHHhh
Confidence 555677888888877665
No 89
>PRK15307 major fimbrial protein StkA; Provisional
Probab=20.78 E-value=97 Score=24.71 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=7.9
Q ss_pred CchHHHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITMAI 16 (147)
Q Consensus 1 m~~~k~~~~l~i~~al 16 (147)
|++.|+++..++++.|
T Consensus 1 m~~~~~~l~~~~~~~~ 16 (201)
T PRK15307 1 MFLKKYGLAAAVAMTL 16 (201)
T ss_pred CchHHHHHHHHHHHHH
Confidence 7766554443333333
No 90
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed
Probab=20.77 E-value=1.3e+02 Score=25.25 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=14.2
Q ss_pred CchHHHHHHHHHHHHHHHHHh
Q 037083 1 MNMMKIILTIAITMAITITLT 21 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~~ 21 (147)
|+..|.+-.++++++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (396)
T PRK09474 1 MKIKKGLRTLALSALATLMFS 21 (396)
T ss_pred CcHHHHHHHHHHHHHHHHHHh
Confidence 777776666666666666665
No 91
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=20.69 E-value=1.3e+02 Score=20.30 Aligned_cols=12 Identities=50% Similarity=0.639 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 037083 7 ILTIAITMAITI 18 (147)
Q Consensus 7 ~~~l~i~~al~~ 18 (147)
+++++|++.++.
T Consensus 10 iLliaitVilaa 21 (80)
T PF07790_consen 10 ILLIAITVILAA 21 (80)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 92
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=20.53 E-value=1e+02 Score=19.54 Aligned_cols=18 Identities=11% Similarity=0.052 Sum_probs=8.0
Q ss_pred chHHHHHHHHHHHHHHHH
Q 037083 2 NMMKIILTIAITMAITIT 19 (147)
Q Consensus 2 ~~~k~~~~l~i~~al~~~ 19 (147)
++.|...++++++.+.++
T Consensus 23 ~~~k~~~~~~~~~li~la 40 (44)
T PF07835_consen 23 KLTKWGTIAIAAILIFLA 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445554444444433333
No 93
>PF08116 Toxin_29: PhTx neurotoxin family; InterPro: IPR012634 This family consists of PhTx insecticidal neurotoxins that are found in the venom of Phoneutria nigriventer (Brazilian armed spider). The venom of the P. nigrivente contains numerous neurotoxic polypeptides of 30-140 amino acids, which exert a range of biological effects. While some of these neurotoxins are lethal to mice after intracerebroventricular injections, others are extremely toxic to insects of the orders Diptera and Dictyoptera but had much weaker toxic effects on mice [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=20.52 E-value=32 Score=20.76 Aligned_cols=14 Identities=36% Similarity=1.277 Sum_probs=6.4
Q ss_pred cCCCCCccccCCcc
Q 037083 103 KKCKFTEACCRGQC 116 (147)
Q Consensus 103 ~~C~~g~~CC~G~C 116 (147)
..|.....||.|+|
T Consensus 8 qQCtSDgqCC~G~C 21 (31)
T PF08116_consen 8 QQCTSDGQCCNGRC 21 (31)
T ss_pred cccCcCCceecchh
Confidence 33444444455544
No 94
>PF08091 Toxin_21: Spider insecticidal peptide; InterPro: IPR012626 This family consists of insecticidal peptides isolated from venom of spiders of Aptostichus schlingeri (Trap-door spider) and Calisoga sp. Nine insecticidal peptides were isolated from the venom of the A. schlinger spider and seven of these toxins cause flaccid paralysis to insect larvae within 10 min of injection. However, all nine peptides were lethal within 24 hours [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=20.41 E-value=43 Score=21.21 Aligned_cols=9 Identities=33% Similarity=1.121 Sum_probs=4.2
Q ss_pred cccCccccc
Q 037083 82 TCCNNKCMD 90 (147)
Q Consensus 82 ~cC~~~Cvd 90 (147)
.||++.|-+
T Consensus 13 dCC~g~C~~ 21 (39)
T PF08091_consen 13 DCCSGNCGY 21 (39)
T ss_pred hhccCCccc
Confidence 444444444
No 95
>PHA02291 hypothetical protein
Probab=20.38 E-value=98 Score=24.05 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=13.5
Q ss_pred CchHHHHHHHHHHHHHHHHHh
Q 037083 1 MNMMKIILTIAITMAITITLT 21 (147)
Q Consensus 1 m~~~k~~~~l~i~~al~~~~~ 21 (147)
|.-.+.||-|+++.+|+++++
T Consensus 1 MS~K~~iFYiL~~~VL~~si~ 21 (132)
T PHA02291 1 MSRKASIFYILVVIVLAFSIS 21 (132)
T ss_pred CCcchhhHHHHHHHHHHHHHH
Confidence 555566776666666666665
No 96
>PRK06273 ferredoxin; Provisional
Probab=20.30 E-value=39 Score=26.73 Aligned_cols=12 Identities=25% Similarity=0.525 Sum_probs=8.6
Q ss_pred cchhcCcCCCCC
Q 037083 125 HCGRCNNRCEKG 136 (147)
Q Consensus 125 nCG~Cg~~C~~g 136 (147)
.||.|-.+||.+
T Consensus 95 ~Cg~C~~aCP~~ 106 (165)
T PRK06273 95 YCLYCHDFCPVF 106 (165)
T ss_pred CCCCcchhCCHh
Confidence 477777777765
Done!