Query 037083
Match_columns 147
No_of_seqs 151 out of 221
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 14:11:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hvw_A Omega-ACTX-HV1A, omega- 81.8 0.62 2.1E-05 26.3 1.4 19 102-120 5-23 (26)
2 4aor_D Trypsin inhibitor 3; hy 73.7 1.6 5.3E-05 26.3 1.6 26 66-91 3-28 (37)
3 1axh_A Atracotoxin-HVI, ACTX-H 55.1 5.1 0.00017 24.2 1.4 17 102-118 8-24 (37)
4 3lay_A Zinc resistance-associa 44.5 4.7 0.00016 31.4 0.0 15 1-15 25-39 (175)
5 1du9_A BMP02 neurotoxin; helix 42.0 6.8 0.00023 22.4 0.4 24 66-89 2-25 (28)
6 2fdn_A Ferredoxin; electron tr 38.4 16 0.00056 21.2 1.8 37 97-136 10-50 (55)
7 1n7d_A LDL receptor, low-densi 28.2 1.2E+02 0.004 27.1 6.3 49 93-144 205-268 (699)
8 1bc6_A 7-Fe ferredoxin; electr 27.3 13 0.00045 23.2 0.0 37 98-136 13-52 (77)
9 2ktc_A Potassium channel toxin 26.5 11 0.00037 22.4 -0.5 25 65-89 3-27 (34)
10 1n7d_A LDL receptor, low-densi 26.3 1.2E+02 0.0042 26.9 6.1 51 92-144 155-227 (699)
11 4i62_A Amino acid ABC transpor 25.8 14 0.00049 26.7 0.0 10 1-10 2-11 (269)
12 1qle_D Cytochrome AA3, ccytoch 24.5 50 0.0017 20.2 2.3 18 2-19 22-39 (43)
13 1oqw_A Fimbrial protein; type 24.4 42 0.0014 23.9 2.3 20 2-21 5-24 (144)
14 2hi2_A Fimbrial protein; type 23.7 31 0.001 24.9 1.4 17 2-18 5-21 (158)
15 7fd1_A FD1, protein (7-Fe ferr 23.7 25 0.00084 23.4 0.9 39 97-137 10-53 (106)
16 1acw_A Natural scorpion peptid 22.4 11 0.00039 21.6 -0.9 24 66-89 2-25 (29)
17 3sok_A Fimbrial protein; pilus 22.2 49 0.0017 24.0 2.3 20 2-21 5-24 (151)
18 1m56_D Cytochrome C oxidase; m 20.9 63 0.0021 20.4 2.3 18 2-19 30-47 (51)
No 1
>1hvw_A Omega-ACTX-HV1A, omega-atracotoxin-HV1A; cystine knot, beta-hairpin; NMR {Synthetic} SCOP: g.3.6.2
Probab=81.76 E-value=0.62 Score=26.34 Aligned_cols=19 Identities=26% Similarity=0.857 Sum_probs=13.2
Q ss_pred ccCCCCCccccCCccccCc
Q 037083 102 KKKCKFTEACCRGQCVNLS 120 (147)
Q Consensus 102 g~~C~~g~~CC~G~Cvdl~ 120 (147)
|..|++.+.||.|.|++-.
T Consensus 5 gq~Cp~~e~CCSGsCt~~~ 23 (26)
T 1hvw_A 5 GQPCPYNENCCSQSCTGGR 23 (26)
T ss_dssp TSBCSSTTSBSSCCEETTE
T ss_pred CCcCCCCcccccccccccc
Confidence 4567777778887777643
No 2
>4aor_D Trypsin inhibitor 3; hydrolase-inhibitor complex, miniprotein scaffold, knottins, protease inhibitor; HET: GOL MES; 1.70A {Spinacia oleracea} PDB: 4aoq_D*
Probab=73.73 E-value=1.6 Score=26.33 Aligned_cols=26 Identities=31% Similarity=0.910 Sum_probs=20.6
Q ss_pred ccccccccccCcCccccccCcccccc
Q 037083 66 HCHKDNEVCSLFGRNSTCCNNKCMDL 91 (147)
Q Consensus 66 ~C~~~~~iC~~~~~g~~cC~~~Cvd~ 91 (147)
.|.+...||...++...||.+.||.-
T Consensus 3 ~c~~s~~ic~~f~~p~~ccsg~cvph 28 (37)
T 4aor_D 3 KCSPSGAICSGFGPPEQCCSGACVPH 28 (37)
T ss_dssp -CBCTTCEECTTSCGGGBTTSCEEEC
T ss_pred ccccCCCccCCCCCccccccccccCC
Confidence 57888889988766678999999854
No 3
>1axh_A Atracotoxin-HVI, ACTX-HVI; neurotoxin, insecticidal toxin, cystine knot, funnel-WEB; NMR {Hadronyche versuta} SCOP: g.3.6.2
Probab=55.10 E-value=5.1 Score=24.21 Aligned_cols=17 Identities=29% Similarity=0.979 Sum_probs=13.4
Q ss_pred ccCCCCCccccCCcccc
Q 037083 102 KKKCKFTEACCRGQCVN 118 (147)
Q Consensus 102 g~~C~~g~~CC~G~Cvd 118 (147)
|..|++.+.||.|.|..
T Consensus 8 gQPCpyne~CCs~sct~ 24 (37)
T 1axh_A 8 GQPCPYNENCCSQSCTF 24 (37)
T ss_dssp TSBCSSGGGBSSSCEEE
T ss_pred CCcCCCcccccccccce
Confidence 56788888888888865
No 4
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.45 E-value=4.7 Score=31.35 Aligned_cols=15 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHH
Q 037083 1 MNMMKIILTIAITMA 15 (147)
Q Consensus 1 m~~~k~~~~l~i~~a 15 (147)
||+.|.++|.+|+++
T Consensus 25 Mk~~kk~~la~~al~ 39 (175)
T 3lay_A 25 MKRNNKSAIALIALS 39 (175)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888887777
No 5
>1du9_A BMP02 neurotoxin; helix, sheet; NMR {Mesobuthus martensii} SCOP: g.3.7.2 PDB: 1wm8_A
Probab=42.01 E-value=6.8 Score=22.37 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=19.1
Q ss_pred ccccccccccCcCccccccCcccc
Q 037083 66 HCHKDNEVCSLFGRNSTCCNNKCM 89 (147)
Q Consensus 66 ~C~~~~~iC~~~~~g~~cC~~~Cv 89 (147)
+|...|.-|..+.+.++|.+++|+
T Consensus 2 gCeecP~HC~~k~a~~~Cdn~~C~ 25 (28)
T 1du9_A 2 GCEECPMHCKGKNAKPTCDDGVCN 25 (28)
T ss_dssp CTTSHHHHSCSSSCCEEEETTEEE
T ss_pred ccccchhhhccccccccccCCeee
Confidence 577777778877777889998886
No 6
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=38.38 E-value=16 Score=21.17 Aligned_cols=37 Identities=27% Similarity=0.772 Sum_probs=20.7
Q ss_pred cchhcccCCCCCcccc-CCccccCccCC---CcchhcCcCCCCC
Q 037083 97 NCGACKKKCKFTEACC-RGQCVNLSFDK---RHCGRCNNRCEKG 136 (147)
Q Consensus 97 NCG~Cg~~C~~g~~CC-~G~Cvdl~~D~---~nCG~Cg~~C~~g 136 (147)
+||.|-.+|+.+-.== .+. ...|. ..||.|-.+||.+
T Consensus 10 ~C~~C~~~CP~~ai~~~~~~---~~~~~~~C~~C~~C~~~CP~~ 50 (55)
T 2fdn_A 10 SCGACEPECPVNAISSGDDR---YVIDADTCIDCGACAGVCPVD 50 (55)
T ss_dssp CCCTTGGGCTTCCEECCSSS---CEECTTTCCCCCHHHHTCTTC
T ss_pred ChhhHHHHCCccccCcCCCE---EEeccccCcChhChHHHcccc
Confidence 6778888887652100 111 11222 3578888888876
No 7
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=28.18 E-value=1.2e+02 Score=27.08 Aligned_cols=49 Identities=31% Similarity=0.702 Sum_probs=26.2
Q ss_pred cCCCcchhcccCCCCCc-cccCCccccC------------ccCCCcchhcCcCCC--CCCccCCcee
Q 037083 93 TDDKNCGACKKKCKFTE-ACCRGQCVNL------------SFDKRHCGRCNNRCE--KGQFCVYGMC 144 (147)
Q Consensus 93 tD~~NCG~Cg~~C~~g~-~CC~G~Cvdl------------~~D~~nCG~Cg~~C~--~g~~C~~G~C 144 (147)
+|..||. ...|..++ .|=.|.|++. .+|..+|.. ...|. ....|..|.|
T Consensus 205 sDE~~C~--~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~C~~-~~~C~~~~~~~C~~g~C 268 (699)
T 1n7d_A 205 SDEENCA--VATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVN-VTLCEGPNKFKCHSGEC 268 (699)
T ss_dssp CSSCSCC--CCCCCSSEEESSSSCEEETTCCSSSCCCSSSSCSSSSTTC-CCCCCSTTCCCCTTSCC
T ss_pred cccccCC--CcccCCCcEecCCCceeeeecccCCCCCCCCCCccCCCCC-CCcccCCCceecCCCcE
Confidence 5788886 24566554 4555666553 256667753 23442 2234555555
No 8
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=27.34 E-value=13 Score=23.23 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=20.1
Q ss_pred chhcccCCCCCccccCCccccCccCC---CcchhcCcCCCCC
Q 037083 98 CGACKKKCKFTEACCRGQCVNLSFDK---RHCGRCNNRCEKG 136 (147)
Q Consensus 98 CG~Cg~~C~~g~~CC~G~Cvdl~~D~---~nCG~Cg~~C~~g 136 (147)
||.|-.+|+.+-.==.+ ..+..|+ .+||.|-.+||.+
T Consensus 13 C~~C~~~Cp~~ai~~~~--~~~~~~~~~C~~Cg~C~~~CP~~ 52 (77)
T 1bc6_A 13 DASCVEVCPVDCIHEGE--DQYYIDPDVCIDCGACEAVCPVS 52 (77)
T ss_dssp CCSSTTTCTTCCEEECS--SSEEECTTTCCSCCSHHHHSGGG
T ss_pred cchhHHhcccccEEeCC--CcEEECcccCcCccCCHhhcCcc
Confidence 77888888875221111 0112222 3577777788765
No 9
>2ktc_A Potassium channel toxin alpha-KTX 9.4; BTK-2, scorpion toxin, KV1.1, disulfide bond, ionic channel inhibitor, neurotoxin; NMR {Mesobuthus tamulus}
Probab=26.46 E-value=11 Score=22.39 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=20.3
Q ss_pred cccccccccccCcCccccccCcccc
Q 037083 65 DHCHKDNEVCSLFGRNSTCCNNKCM 89 (147)
Q Consensus 65 ~~C~~~~~iC~~~~~g~~cC~~~Cv 89 (147)
.+|...|.-|..+-+.++|.+++|+
T Consensus 3 VgCEeCP~HCk~k~A~~tCdn~~C~ 27 (34)
T 2ktc_A 3 VGCAECPMHCKGKMAKPTCENEVCK 27 (34)
T ss_dssp CHHHHHHHTCCTTCCCEEEETTEEE
T ss_pred cccccChhhhccccccccccCCeEe
Confidence 5777778888887777889999887
No 10
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=26.27 E-value=1.2e+02 Score=26.93 Aligned_cols=51 Identities=25% Similarity=0.720 Sum_probs=28.9
Q ss_pred ccCC--Ccchhc------ccCCCCCc-cccCCccccC------------ccCCCcchhcCcCCCCCC-ccCCcee
Q 037083 92 STDD--KNCGAC------KKKCKFTE-ACCRGQCVNL------------SFDKRHCGRCNNRCEKGQ-FCVYGMC 144 (147)
Q Consensus 92 ~tD~--~NCG~C------g~~C~~g~-~CC~G~Cvdl------------~~D~~nCG~Cg~~C~~g~-~C~~G~C 144 (147)
.+|. .+|+.= ...|..++ .|=.|.|+.. .+|..||. ...|..++ .|..|.|
T Consensus 155 gsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~C~--~~~C~~~~f~C~~g~C 227 (699)
T 1n7d_A 155 GSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA--VATCRPDEFQCSDGNC 227 (699)
T ss_dssp SSSSSCSSSSCCCCCSSCCCCSCSSSCCCSSSCCCSTTCTTSSSCCSTTSCSSCSCC--CCCCCSSEEESSSSCE
T ss_pred CcccccccCCCcccccCCCCCCCCcceecCCCceEechhccCCCCCCCCCcccccCC--CcccCCCcEecCCCce
Confidence 3677 888642 22566554 4555666553 36788886 23454443 4655655
No 11
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=25.80 E-value=14 Score=26.68 Aligned_cols=10 Identities=50% Similarity=0.600 Sum_probs=0.0
Q ss_pred CchHHHHHHH
Q 037083 1 MNMMKIILTI 10 (147)
Q Consensus 1 m~~~k~~~~l 10 (147)
|+.||.++++
T Consensus 2 M~~m~~~~~~ 11 (269)
T 4i62_A 2 MNKMKKVLMT 11 (269)
T ss_dssp ----------
T ss_pred cHHHHHHHHH
Confidence 5545444433
No 12
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=24.54 E-value=50 Score=20.17 Aligned_cols=18 Identities=6% Similarity=0.159 Sum_probs=8.8
Q ss_pred chHHHHHHHHHHHHHHHH
Q 037083 2 NMMKIILTIAITMAITIT 19 (147)
Q Consensus 2 ~~~k~~~~l~i~~al~~~ 19 (147)
++.|...++++++.+.++
T Consensus 22 ~~~k~gt~~~~~~ll~ma 39 (43)
T 1qle_D 22 KGATWVSILSIAVLVFLA 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555554444444443
No 13
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=24.42 E-value=42 Score=23.90 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=14.0
Q ss_pred chHHHHHHHHHHHHHHHHHh
Q 037083 2 NMMKIILTIAITMAITITLT 21 (147)
Q Consensus 2 ~~~k~~~~l~i~~al~~~~~ 21 (147)
+||-.+.||.|++++++..-
T Consensus 5 Ellivi~Ii~il~~ia~p~~ 24 (144)
T 1oqw_A 5 ELMIVVAIIGILAAIAIPQY 24 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777778788777776543
No 14
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=23.70 E-value=31 Score=24.86 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=10.2
Q ss_pred chHHHHHHHHHHHHHHH
Q 037083 2 NMMKIILTIAITMAITI 18 (147)
Q Consensus 2 ~~~k~~~~l~i~~al~~ 18 (147)
+||-.++||.|++++++
T Consensus 5 El~vvi~ii~il~~~~~ 21 (158)
T 2hi2_A 5 ELMIVIAIVGILAAVAL 21 (158)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666666554
No 15
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=23.67 E-value=25 Score=23.44 Aligned_cols=39 Identities=18% Similarity=0.412 Sum_probs=20.7
Q ss_pred cch--hcccCCCCCccccCCccccCccC---CCcchhcCcCCCCCC
Q 037083 97 NCG--ACKKKCKFTEACCRGQCVNLSFD---KRHCGRCNNRCEKGQ 137 (147)
Q Consensus 97 NCG--~Cg~~C~~g~~CC~G~Cvdl~~D---~~nCG~Cg~~C~~g~ 137 (147)
+|| .|-.+|+.+-.==... .+..| =..||.|-.+||.+.
T Consensus 10 ~C~~~~C~~~CP~~ai~~~~~--~~~i~~~~C~~Cg~C~~~CP~~a 53 (106)
T 7fd1_A 10 KCKYTDCVEVCPVDCFYEGPN--FLVIHPDECIDCALCEPECPAQA 53 (106)
T ss_dssp TTCCCHHHHHCTTCCEEECSS--CEEECTTTCCCCCTTGGGCTTCC
T ss_pred CccCcHHHHHcCccceEcCCC--cEEECcccCCChhhhHHhCCChh
Confidence 467 7777787652110100 01122 246888888888763
No 16
>1acw_A Natural scorpion peptide P01; scorpion toxin, potassium channel, neurotoxin, toxin; NMR {Androctonus mauretanicus mauretanicus} SCOP: g.3.7.2 PDB: 1wm7_A
Probab=22.43 E-value=11 Score=21.59 Aligned_cols=24 Identities=33% Similarity=0.699 Sum_probs=17.1
Q ss_pred ccccccccccCcCccccccCcccc
Q 037083 66 HCHKDNEVCSLFGRNSTCCNNKCM 89 (147)
Q Consensus 66 ~C~~~~~iC~~~~~g~~cC~~~Cv 89 (147)
+|...|.-|..+-+.++|.+++|+
T Consensus 2 ~CedcP~HC~~k~a~~~C~n~~C~ 25 (29)
T 1acw_A 2 SCEDCPEHCSTQKAQAKCDNDKCV 25 (29)
T ss_dssp CSSHHHHHHHTTTCEEEEETTEEE
T ss_pred ccccchhhhhcccccccccCCeee
Confidence 456666667766667788888886
No 17
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=22.23 E-value=49 Score=23.97 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHHHHHHHHh
Q 037083 2 NMMKIILTIAITMAITITLT 21 (147)
Q Consensus 2 ~~~k~~~~l~i~~al~~~~~ 21 (147)
+||-.++||.|++++++..-
T Consensus 5 EllvviaIigiLaaia~p~~ 24 (151)
T 3sok_A 5 ELMIVVAIIGILAAFAIPAY 24 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777788888887776543
No 18
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=20.88 E-value=63 Score=20.39 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=8.6
Q ss_pred chHHHHHHHHHHHHHHHH
Q 037083 2 NMMKIILTIAITMAITIT 19 (147)
Q Consensus 2 ~~~k~~~~l~i~~al~~~ 19 (147)
++.|...++++++.+.++
T Consensus 30 ~~~k~gt~~~~~~ll~la 47 (51)
T 1m56_D 30 RMVTWAAVVIVAALIFLA 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555554444444443
Done!