BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037085
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 17/142 (11%)
Query: 47 DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
D+ PLH AA EG ++++ L+S + K S+G T LH A K+ + + L+ +
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
KD +G T LH A K+IV+LLI + ++ +NT + G+T L
Sbjct: 93 GAD------VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD------VNTSDSDGRTPL 140
Query: 167 QLCNANSQDSVF----KEIGWI 184
L + + + K+ GW+
Sbjct: 141 DLAREHGNEEIVKLLEKQGGWL 162
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 57 AALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLF 116
AA G+ D ++ L+ + + S+G T LH A K+ + + L+ +
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD------V 63
Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDS 176
KD +G T LH A K+IV+LLI + ++ +N + G+T L
Sbjct: 64 NAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD------VNAKDSDGRTPLHYAAKEGHKE 117
Query: 177 VFK 179
+ K
Sbjct: 118 IVK 120
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 17/142 (11%)
Query: 47 DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
D+ PLH AA G +V++ L+S + K S+G+T LHLA + + + L+ +
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK-DSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
KD +G T LHLA N K++V+LL+ + ++ NT + G+T L
Sbjct: 93 GAD------PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD------PNTSDSDGRTPL 140
Query: 167 QLCNANSQDSVF----KEIGWI 184
L + + V K+ GW+
Sbjct: 141 DLAREHGNEEVVKLLEKQGGWL 162
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 56 RAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHL 115
AA G+ D ++ L+ + + S+G+T LHLA + + + L+ +
Sbjct: 10 EAAENGNKDRVKDLLENGAD-VNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD------ 62
Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQD 175
KD +G T LHLA N K++V+LL+ + ++ N + G+T L L N
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD------PNAKDSDGKTPLHLAAENGHK 116
Query: 176 SVFK 179
V K
Sbjct: 117 EVVK 120
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 12 KNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVS 71
K+ G+T +HL + +G +V++ + + D+ PLH AA G +V++ L+S
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK-DSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 72 ICPESLEKLTSNGETALHLA 91
+ S+G T L LA
Sbjct: 125 QGADP-NTSDSDGRTPLDLA 143
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 47 DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
D+ PLH AA G +V++ L+S + K S+G T LH A + + + L+ +
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
KD +G T LH A N K++V+LLI + ++ +NT + G+T L
Sbjct: 93 GAD------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD------VNTSDSDGRTPL 140
Query: 167 QLCNANSQDSVF----KEIGWI 184
L + + V K+ GW+
Sbjct: 141 DLAREHGNEEVVKLLEKQGGWL 162
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
Query: 57 AALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLF 116
AA G+ D ++ L+ + + S+G T LH A + + + L+ +
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGAD------V 63
Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDS 176
KD +G T LH A N K++V+LLI + ++ +N + G+T L N
Sbjct: 64 NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD------VNAKDSDGRTPLHHAAENGHKE 117
Query: 177 VFK 179
V K
Sbjct: 118 VVK 120
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 78/148 (52%), Gaps = 14/148 (9%)
Query: 8 LASIKNQRGETTMHLLSTDGD----ARMVRIFGENNRELCLEVDNSL-MIPLHRAALEGD 62
+A+ ++ G+T +H+ G+ R+V +F + REL ++ N+L PLH A +
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL--DIYNNLRQTPLHLAVITTL 58
Query: 63 SDVIRALVSI--CPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD 120
V+R LV+ P +L++ +G+TA HLA + +AL+D A + ++
Sbjct: 59 PSVVRLLVTAGASPMALDR---HGQTAAHLACEHRSPTCLRALLDSAAPGTLD--LEARN 113
Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSN 148
+G T LH+A + ++ V+LL+ ++
Sbjct: 114 YDGLTALHVAVNTECQETVQLLLERGAD 141
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 47 DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
D+ PLH AA G ++++ L+S + K S+G T LH A + + + L+ +
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK-DSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
KD +G T LH A N K+IV+LL+ + ++ NT + G+T L
Sbjct: 93 GAD------PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD------PNTSDSDGRTPL 140
Query: 167 QLCNANSQDSVF----KEIGWI 184
L + + + K+ GW+
Sbjct: 141 DLAREHGNEEIVKLLEKQGGWL 162
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 57 AALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLF 116
AA G+ D ++ L+ + S+G T LH A + + + L+ +
Sbjct: 11 AAENGNKDRVKDLLENGADP-NASDSDGRTPLHYAAENGHKEIVKLLLSKGAD------P 63
Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDS 176
KD +G T LH A N K+IV+LL+ + ++ N + G+T L N
Sbjct: 64 NAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD------PNAKDSDGRTPLHYAAENGHKE 117
Query: 177 VFK 179
+ K
Sbjct: 118 IVK 120
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 53 PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
PLH AA G +V++ L+ + K NG T LHLA + + + L++
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 60
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN 172
KDK G T LHLA N ++V+LL+ ++ +N +K G+T L L N
Sbjct: 61 ---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARN 111
Query: 173 SQDSVFK 179
V K
Sbjct: 112 GHLEVVK 118
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 16 GETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE 75
G T +HL + +G +V++ E ++ + D + PLH AA G +V++ L+ +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 76 SLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKL 135
K NG T LHLA + + + L++ KDK G T LHLA N
Sbjct: 61 VNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGH 113
Query: 136 KQIVELLI 143
++V+LL+
Sbjct: 114 LEVVKLLL 121
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 83 NGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
NG T LHLA + + + L++ KDK G T LHLA N ++V+LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 143 IRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFK 179
+ ++ +N +K G+T L L N V K
Sbjct: 55 LEAGAD------VNAKDKNGRTPLHLAARNGHLEVVK 85
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 12 KNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVS 71
K++ G T +HL + +G +V++ E ++ + D + PLH AA G +V++ L+
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 72 ICPESLEKLTSNGETALHLAVKKSRSDAFQALVD 105
+ K NG T LHLA + + + L++
Sbjct: 90 AGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 18/157 (11%)
Query: 32 VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
VRI N ++ + D PLH AA EG +++ L+ + K +G T LHLA
Sbjct: 18 VRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLA 75
Query: 92 VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
++ + + L+ KDK+G T LHLA +IVE+L++ ++
Sbjct: 76 AREGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--- 126
Query: 152 MIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRA 188
+N +K G+T L N ++I ++Q+A
Sbjct: 127 ---VNAQDKFGKTPFDLAIDNGN----EDIAEVLQKA 156
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 57 AALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLF 116
AA G D +R L++ + K +G T LHLA ++ + + L+
Sbjct: 9 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD------V 61
Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
KDK+G T LHLA +IVE+L++ ++ +N +K G T L L
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLA 108
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 32 VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
VRI N ++ + D PLH AA EG +++ L+ + K +G T LHLA
Sbjct: 30 VRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLA 87
Query: 92 VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
++ + + L+ KDK+G T LHLA +IVE+L++ ++
Sbjct: 88 AREGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--- 138
Query: 152 MIRINTVNKQGQTALQLCNANSQDSV 177
+N +K G+TA + N + +
Sbjct: 139 ---VNAQDKFGKTAFDISIDNGNEDL 161
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 57 AALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLF 116
AA G D +R L++ + K +G T LHLA ++ + + L+
Sbjct: 21 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD------V 73
Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
KDK+G T LHLA +IVE+L++ ++ +N +K G T L L
Sbjct: 74 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLA 120
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 18/157 (11%)
Query: 32 VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
VRI N ++ + D PLH AA EG +++ L+ + K +G T LHLA
Sbjct: 18 VRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLA 75
Query: 92 VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
++ + + L+ KDK+G T LHLA +IVE+L++ ++
Sbjct: 76 AREGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--- 126
Query: 152 MIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRA 188
+N +K G+T L + +I ++Q+A
Sbjct: 127 ---VNAQDKFGKTPFDLAIREGHE----DIAEVLQKA 156
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 57 AALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLF 116
AA G D +R L++ + K +G T LHLA ++ + + L+
Sbjct: 9 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD------V 61
Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
KDK+G T LHLA +IVE+L++ ++ +N +K G T L L
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLA 108
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 83 NGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
NG T LHLA + + + L++ KDK G T LHLA N ++V+LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 143 IRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFK 179
+ ++ +N +K G+T L L N V K
Sbjct: 55 LEAGAD------VNAKDKNGRTPLHLAARNGHLEVVK 85
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 53 PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
PLH AA G +V++ L+ + K NG T LHLA + + + L++
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 60
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
KDK G T LHLA N ++V+LL+
Sbjct: 61 ---VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 16 GETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE 75
G T +HL + +G +V++ E ++ + D + PLH AA G +V++ L+ +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 76 SLEKLTSNGETALHLAVKKSRSDAFQALVD 105
K NG T LHLA + + + L++
Sbjct: 61 VNAK-DKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 12 KNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
K++ G T +HL + +G +V++ E ++ + D + PLH AA G +V++ L+
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLL 88
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 32 VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
VRI N ++ VDN+ + PLH AA+ G +++ L+ + ++ G T LHLA
Sbjct: 30 VRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLA 87
Query: 92 VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
+ + L+ K + F D G+T LHLA +IVE+L++ ++
Sbjct: 88 AMTGHLEIVEVLL---KYGADVNAF---DMTGSTPLHLAADEGHLEIVEVLLKYGAD--- 138
Query: 152 MIRINTVNKQGQTALQLCNANSQDSVFK 179
+N +K G+TA + N + + K
Sbjct: 139 ---VNAQDKFGKTAFDISIDNGNEDLAK 163
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 53 PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
PLH AA G +++ L+ + + + G T LHLA + + L+
Sbjct: 50 PLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD--- 105
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN 172
KD EG T LHLA + +IVE+L++ ++ +N +K G+TA + N
Sbjct: 106 ---VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD------VNAQDKFGKTAFDISIDN 156
Query: 173 SQDSV 177
+ +
Sbjct: 157 GNEDL 161
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 49/212 (23%)
Query: 8 LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEV---DNSLMIPLHRAALEGDSD 64
LA+ +Q T +H + G +V +L + V D++ PLH AA G +
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFL----LQLGVPVNDKDDAGWSPLHIAASAGRDE 87
Query: 65 VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKE------ 113
+++AL+ + + + NG T LH A K+R + L++ +AK H +
Sbjct: 88 IVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA 146
Query: 114 ---------HLFTW-------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINT 157
H+ + +D EGNT LHLA + + +LL+ + ++ I
Sbjct: 147 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS------IYI 200
Query: 158 VNKQGQTALQLCNANSQDSVFKEIGWIIQRAV 189
NK+ +T LQ+ +G I++R V
Sbjct: 201 ENKEEKTPLQVAKGG--------LGLILKRMV 224
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 49/212 (23%)
Query: 8 LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEV---DNSLMIPLHRAALEGDSD 64
LA+ +Q T +H + G +V +L + V D++ PLH AA G +
Sbjct: 33 LATRTDQDSRTALHWACSAGHTEIVEFL----LQLGVPVNDKDDAGWSPLHIAASAGRDE 88
Query: 65 VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSHRKE------ 113
+++AL+ + + + NG T LH A K+R + L++ +AK H +
Sbjct: 89 IVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA 147
Query: 114 ---------HLFTW-------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINT 157
H+ + +D EGNT LHLA + + +LL+ + ++ I
Sbjct: 148 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS------IYI 201
Query: 158 VNKQGQTALQLCNANSQDSVFKEIGWIIQRAV 189
NK+ +T LQ+ +G I++R V
Sbjct: 202 ENKEEKTPLQVAKGG--------LGLILKRMV 225
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 18/166 (10%)
Query: 6 PQLASIKNQRGETTMHLLSTDGDARMVRIF---GENNRELCLEVDNSLMIPLHRAALEGD 62
P L K+Q G +H S A + F N L D+S P H A G+
Sbjct: 26 PSLLLQKDQDGRIPLHW-SVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN 84
Query: 63 SDVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD 120
+V+++L + P+ L K+T+ G T LHLAV K + Q L++ S R KD
Sbjct: 85 LEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------KD 137
Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
K LH A +++ELL + +N +KQG T L
Sbjct: 138 KFNQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPL 178
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 6 PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDV 65
P L I NQ G T +HL + + EN + ++ D IPLHRAA G +
Sbjct: 98 PDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKL 155
Query: 66 IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
I L + ++ G T L A+ + DA LV++
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
Query: 53 PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
PLH+A +E + ++ L+ P L + +G LH +V + L+ + ++
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN--- 61
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
+L + D G T H+A ++V+ L +R + +N + QG T L L
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLY----DRPLKPDLNKITNQGVTCLHL 113
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 18/166 (10%)
Query: 6 PQLASIKNQRGETTMHLLSTDGDARMVRIF---GENNRELCLEVDNSLMIPLHRAALEGD 62
P L K+Q G +H S A + F N L D+S P H A G+
Sbjct: 26 PSLLLQKDQDGRIPLHW-SVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN 84
Query: 63 SDVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD 120
+V+++L + P+ L K+T+ G T LHLAV K + Q L++ S R KD
Sbjct: 85 LEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------KD 137
Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
K LH A +++ELL + +N +KQG T L
Sbjct: 138 KFNQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPL 178
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 6 PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDV 65
P L I NQ G T +HL + + EN + ++ D IPLHRAA G +
Sbjct: 98 PDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKL 155
Query: 66 IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
I L + ++ G T L A+ + DA LV++
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 52 IPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHR 111
PLH+A +E + ++ L+ P L + +G LH +V + L+ + ++
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN-- 61
Query: 112 KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
+L + D G T H+A ++V+ L +R + +N + QG T L L
Sbjct: 62 -VNLDDYPDDSGWTPFHIACSVGNLEVVKSLY----DRPLKPDLNKITNQGVTCLHL 113
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 18/166 (10%)
Query: 6 PQLASIKNQRGETTMHLLSTDGDARMVRIF---GENNRELCLEVDNSLMIPLHRAALEGD 62
P L K+Q G +H S A + F N L D+S P H A G+
Sbjct: 26 PSLLLQKDQDGRIPLHW-SVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN 84
Query: 63 SDVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD 120
+V+++L + P+ L K+T+ G T LHLAV K + Q L++ S R KD
Sbjct: 85 LEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------KD 137
Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTAL 166
K LH A +++ELL + +N +KQG T L
Sbjct: 138 KFNQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPL 178
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 6 PQLASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDV 65
P L I NQ G T +HL + + EN + ++ D IPLHRAA G +
Sbjct: 98 PDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKL 155
Query: 66 IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
I L + ++ G T L A+ + DA LV++
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
Query: 53 PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
PLH+A +E + ++ L+ P L + +G LH +V + L+ + ++
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN--- 61
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
+L + D G T H+A ++V+ L +R + +N + QG T L L
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLY----DRPLKPDLNKITNQGVTCLHL 113
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 53 PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
PLH AA G ++ ++ L+S + + + +G T LHLA K ++ + L+ +
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD--- 67
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
+ K+GNT HLA N +IV+LL
Sbjct: 68 ---VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 81 TSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVE 140
+ +G T LH A K ++ + L+ + + K+GNT LHLA N +IV+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGAD------VNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 141 LLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFK 179
LL+ + ++ +N +K G T L N + K
Sbjct: 60 LLLAKGAD------VNARSKDGNTPEHLAKKNGHHEIVK 92
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 22/158 (13%)
Query: 32 VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE--SLEKLTSNGETALH 89
VRI N ++ E D+S PLH AA++G +++ L+ + + +K+ G+T LH
Sbjct: 30 VRILMANGADVNAE-DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM---GDTPLH 85
Query: 90 LAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNR 149
LA + + L+ D G T LHLA +IVE+L++ ++
Sbjct: 86 LAALYGHLEIVEVLLKNGAD------VNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD- 138
Query: 150 RIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQR 187
+N +K G+TA + S D+ +++ I+Q+
Sbjct: 139 -----VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 167
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 56 RAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHL 115
AA G D +R L++ + + +G+T LHLA K + + L+
Sbjct: 20 EAARAGQDDEVRILMANGAD-VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD------ 72
Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
DK G+T LHLA L +IVE+L++ ++ +N + G T L L
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLLKNGAD------VNATDTYGFTPLHLA 120
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Query: 32 VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
VRI N ++ E D PLH AA G +++ L+ + + L +G T LHLA
Sbjct: 30 VRILMANGADVNAE-DTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLA 87
Query: 92 VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
K+ + + L+ D G+T LHLA +IVE+L++ ++
Sbjct: 88 AKRGHLEIVEVLLKYGAD------VNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD--- 138
Query: 152 MIRINTVNKQGQTALQLCNANSQDSV 177
+N +K G+TA + N + +
Sbjct: 139 ---VNAQDKFGKTAFDISIDNGNEDL 161
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 54 LHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKE 113
L AA G D +R L++ + + + G+T LHLA + + + L+
Sbjct: 18 LLEAARAGQDDEVRILMANGAD-VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD---- 72
Query: 114 HLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
D G+T LHLA +IVE+L++ ++ +N + G T L L
Sbjct: 73 --VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD------VNADDTIGSTPLHLA 120
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 18/156 (11%)
Query: 32 VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
VRI N ++ D S + PLH AA G +++ L+ + + + G T LHLA
Sbjct: 30 VRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLA 87
Query: 92 VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
+ + L+ + TW G+T LHLA + +IVE+L++ ++
Sbjct: 88 ALIGHLEIVEVLLKHGADVNA--VDTW----GDTPLHLAAIMGHLEIVEVLLKHGAD--- 138
Query: 152 MIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQR 187
+N +K G+TA + S D+ +++ I+Q+
Sbjct: 139 ---VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 167
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 56 RAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHL 115
AA G D +R L++ + + ++G T LHLA + + L+
Sbjct: 20 EAARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHLEIVEVLLKHGAD------ 72
Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
D G+T LHLA L +IVE+L++ ++ +N V+ G T L L
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD------VNAVDTWGDTPLHLA 120
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 30/165 (18%)
Query: 23 LSTDGDARMVRIFGENNRELCLEV--------------DNSLMIPLHRAALEGDSDVIRA 68
L+ DGD+ + + L +EV +N PLH A + ++ A
Sbjct: 1 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 69 LVSI-CPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVL 127
L+ C L G T LHLA ++ + L + + + G+T L
Sbjct: 61 LLGAGCDPELRDF--RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 118
Query: 128 HLATLNKLKQIVELLIRENSNRRIMIRINTVNKQ----GQTALQL 168
HLA+++ IVELL+ ++ VN Q G+TAL L
Sbjct: 119 HLASIHGYLGIVELLVSLGAD---------VNAQEPCNGRTALHL 154
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 11 IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLE-----VDNSLMIPLHRAALEGDSDV 65
+++ RG T +HL G V + ++ L + + LH A++ G +
Sbjct: 70 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 129
Query: 66 IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
+ LVS+ + + NG TALHLAV D L+
Sbjct: 130 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 168
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 18/156 (11%)
Query: 32 VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
VRI N ++ D S + PLH AA G +++ L+ + + + G T LHLA
Sbjct: 30 VRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLA 87
Query: 92 VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
+ + L+ + TW G+T LHLA + +IVE+L++ ++
Sbjct: 88 ALIGHLEIVEVLLKHGADVNA--VDTW----GDTPLHLAAIMGHLEIVEVLLKHGAD--- 138
Query: 152 MIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQR 187
+N +K G+TA + S D+ +++ I+Q+
Sbjct: 139 ---VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 167
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 56 RAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHL 115
AA G D +R L++ + + ++G T LHLA + + L+
Sbjct: 20 EAARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHLEIVEVLLKHGAD------ 72
Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
D G+T LHLA L +IVE+L++ ++ +N V+ G T L L
Sbjct: 73 VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD------VNAVDTWGDTPLHLA 120
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Query: 32 VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
VRI N ++ DN L PLH AA G +++ L+ + + S G T LHLA
Sbjct: 22 VRILMANGADVNATDDNGLT-PLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLA 79
Query: 92 VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
+ + L+ D+ G T LHLA L+ +IVE+L++ ++
Sbjct: 80 AYDGHLEIVEVLLKHGAD------VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD--- 130
Query: 152 MIRINTVNKQGQTALQLC 169
+N + G TA +
Sbjct: 131 ---VNAQDALGLTAFDIS 145
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 22/161 (13%)
Query: 23 LSTDGDARMVRIFGENNRELCLEV--------------DNSLMIPLHRAALEGDSDVIRA 68
L+ DGD+ + + L +EV +N PLH A + ++ A
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 69 LVSI-CPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVL 127
L+ C L G T LHLA ++ + L + + + G+T L
Sbjct: 64 LLGAGCDPELRDF--RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Query: 128 HLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
HLA+++ IVELL+ ++ N G+TAL L
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEPCN-----GRTALHL 157
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 11 IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLE-----VDNSLMIPLHRAALEGDSDV 65
+++ RG T +HL G V + ++ L + + LH A++ G +
Sbjct: 73 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 132
Query: 66 IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
+ LVS+ + + NG TALHLAV D L+
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 16/147 (10%)
Query: 32 VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE-SLEKLTSNGETALHL 90
VRI N ++ DN PLH AA G +++ L+ + + LT G T LHL
Sbjct: 30 VRILMANGADVN-ATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT--GITPLHL 86
Query: 91 AVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRR 150
A + + L+ D +G+T LHLA +IVE+L++ ++
Sbjct: 87 AAATGHLEIVEVLLKHGAD------VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD-- 138
Query: 151 IMIRINTVNKQGQTALQLCNANSQDSV 177
+N +K G+TA + N + +
Sbjct: 139 ----VNAQDKFGKTAFDISIDNGNEDL 161
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 32 VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
VRI N ++ DN+ PLH AA G +++ L+ + ++ G T LHLA
Sbjct: 30 VRILMANGADVN-AADNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLA 87
Query: 92 VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
+ + L+ D +G T LHLA +IVE+L++ ++
Sbjct: 88 AYWGHLEIVEVLLKNGAD------VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD--- 138
Query: 152 MIRINTVNKQGQTALQLCNANSQDSV 177
+N +K G+TA + N + +
Sbjct: 139 ---VNAQDKFGKTAFDISIDNGNEDL 161
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 18/156 (11%)
Query: 32 VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
VRI N ++ E D S PLH AA G +++ L+ + + + G T L LA
Sbjct: 30 VRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLA 87
Query: 92 VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
+ + L+ D EG+T LHLA + +IVE+L++ ++
Sbjct: 88 ALFGHLEIVEVLLKNGAD------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD--- 138
Query: 152 MIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQR 187
+N +K G+TA + S D+ +++ I+Q+
Sbjct: 139 ---VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 167
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 49/210 (23%)
Query: 8 LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEV---DNSLMIPLHRAALEGDSD 64
LA+ +Q T +H + G +V +L + V D++ PLH AA G +
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFL----LQLGVPVNDKDDAGWSPLHIAASAGXDE 87
Query: 65 VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSH--------- 110
+++AL+ + + + NG T LH A K+R + L++ +AK H
Sbjct: 88 IVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRA 146
Query: 111 ------RKEHLFTW-------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINT 157
+ H+ + +D EGNT LHLA + + + L+ + ++ I
Sbjct: 147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS------IYI 200
Query: 158 VNKQGQTALQLCNANSQDSVFKEIGWIIQR 187
NK+ +T LQ+ +G I++R
Sbjct: 201 ENKEEKTPLQVAKGG--------LGLILKR 222
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 81/184 (44%), Gaps = 17/184 (9%)
Query: 11 IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
+ N + ET +H+ + G + + +N ++ + + PLH AA G +++++ L+
Sbjct: 42 VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-QTPLHCAARIGHTNMVKLLL 100
Query: 71 SICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLA 130
T+ G T LH+A ++ + AL+++ S K+G T LH+A
Sbjct: 101 ENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQ------ACMTKKGFTPLHVA 153
Query: 131 TLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQRAVA 190
++ ELL+ +++ N K G T L + ++ + K ++ R +
Sbjct: 154 AKYGKVRVAELLLERDAHP------NAAGKNGLTPLHVAVHHNNLDIVK---LLLPRGGS 204
Query: 191 QQSP 194
SP
Sbjct: 205 PHSP 208
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 16 GETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE 75
G T +H+ S G+ ++V+ ++ ++ + PLH+AA +G +D++ L+
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYS-PLHQAAQQGHTDIVTLLLKNG-A 368
Query: 76 SLEKLTSNGETALHLAVK---KSRSDAFQALVDE 106
S +++S+G T L +A + S +D + + DE
Sbjct: 369 SPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 64/167 (38%), Gaps = 23/167 (13%)
Query: 6 PQLASIKNQRGETTMHLLSTDGDARMVRIFGENN-RELCLEVDNSLMIPLHRAALEGDSD 64
P LA+ G T +H+ + +G V E + C+ PLH AA G
Sbjct: 106 PNLATTA---GHTPLHIAAREGHVETVLALLEKEASQACMTKKG--FTPLHVAAKYGKVR 160
Query: 65 VIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKE 122
V L+ P + K NG T LH+AV + D + L+ S H W
Sbjct: 161 VAELLLERDAHPNAAGK---NGLTPLHVAVHHNNLDIVKLLLPRGGS---PHSPAWN--- 211
Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
G T LH+A ++ L++ + N + QG T L L
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSA------NAESVQGVTPLHLA 252
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 49/210 (23%)
Query: 8 LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEV---DNSLMIPLHRAALEGDSD 64
LA+ +Q T +H + G +V +L + V D++ PLH AA G +
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFL----LQLGVPVNDKDDAGWSPLHIAASAGRDE 87
Query: 65 VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVD-----EAKSH--------- 110
+++AL+ + + + NG T LH A K+R + L++ +AK H
Sbjct: 88 IVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRA 146
Query: 111 ------RKEHLFTW-------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINT 157
+ H+ + +D EGNT LHLA + + + L+ + ++ I
Sbjct: 147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS------IYI 200
Query: 158 VNKQGQTALQLCNANSQDSVFKEIGWIIQR 187
NK+ +T LQ+ +G I++R
Sbjct: 201 ENKEEKTPLQVAKGG--------LGLILKR 222
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
GETALHLA + SRSDA + L++ + +D G T LH A + + ++LI
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASAD------ANIQDNMGRTPLHAAVSADAQGVFQILI 111
Query: 144 R 144
R
Sbjct: 112 R 112
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
GETALHLA + SRSDA + L++ + +D G T LH A + + ++LI
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASAD------ANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 144 R 144
R
Sbjct: 111 R 111
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
GETALHLA + SRSDA + L++ + +D G T LH A + + ++LI
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASAD------ANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 144 R 144
R
Sbjct: 79 R 79
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 53 PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
PLH AA G +++ L+ + K S G T LHLA ++ + + L+
Sbjct: 50 PLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLHLAARRGHLEIVEVLLKNGAD--- 105
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN 172
D G T LHLA +IVE+L++ ++ +N +K G+TA +
Sbjct: 106 ---VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD------VNAQDKFGKTAFDI---- 152
Query: 173 SQDSVFKEIGWIIQR 187
S D+ +++ I+Q+
Sbjct: 153 SIDNGNEDLAEILQK 167
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 13/113 (11%)
Query: 57 AALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLF 116
AA G D +R L++ + + G T LHLA + + L+
Sbjct: 21 AARAGQDDEVRILMANGAD-VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD------V 73
Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
KD G T LHLA +IVE+L++ ++ +N + G T L L
Sbjct: 74 NAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD------VNASDSHGFTPLHLA 120
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 7/118 (5%)
Query: 26 DGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGE 85
+G+A VR++ +N + D+ PLH A EG S V+ L+ + + + +
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDD 73
Query: 86 TALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
T LHLA D Q L+ ++ GN LH A Q+ E L+
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKAD------INAVNEHGNVPLHYACFWGQDQVAEDLV 125
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 7/118 (5%)
Query: 26 DGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGE 85
+G+A VR++ +N + D+ PLH A EG S V+ L+ + + + +
Sbjct: 10 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDD 68
Query: 86 TALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
T LHLA D Q L+ ++ GN LH A Q+ E L+
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKAD------INAVNEHGNVPLHYACFWGQDQVAEDLV 120
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 23/153 (15%)
Query: 13 NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSI 72
N G T +H D + MV+ EN + + DN IPLH AA G D+ L+S
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQ 128
Query: 73 CPESLEKLTSNGETALHLAVKKSRSDAFQ-----ALVDEAKSHRKEHLFTWKD------- 120
+ + S G+T L +A +++ + Q VD + ++E +D
Sbjct: 129 GAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS 187
Query: 121 ---------KEGNTVLHLATLNKLKQIVELLIR 144
K G T LH+A ++++LLI+
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 18/156 (11%)
Query: 32 VRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLA 91
VRI N ++ D+ PLH AA G +++ L+ + + ++G T LHLA
Sbjct: 30 VRILMANGADVNAH-DDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLA 87
Query: 92 VKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
+ + L+ +D G T LHLA +IVE+L++ ++
Sbjct: 88 ADNGHLEIVEVLLKYGAD------VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD--- 138
Query: 152 MIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQR 187
+N +K G+TA + S D+ +++ I+Q+
Sbjct: 139 ---VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 167
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 56 RAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHL 115
AA G D +R L++ + + G T LHLA + + L+
Sbjct: 20 EAARAGQDDEVRILMANGAD-VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD------ 72
Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
+D +G T LHLA N +IVE+L++ ++ +N + G T L L
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD------VNAQDAYGLTPLHLA 120
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
GETALHLA + SRSDA + L++ + +D G T LH A + + ++L+
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASAD------AXIQDNMGRTPLHAAVSADAQGVFQILL 75
Query: 144 R 144
R
Sbjct: 76 R 76
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 14/165 (8%)
Query: 10 SIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRAL 69
++ +Q G + +H+ + G A ++ + ++ + +PLH A +G V++ L
Sbjct: 80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGAR-NADQAVPLHLACQQGHFQVVKCL 138
Query: 70 VSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHL 129
+ + +K S G T L A + L+ S + +GNT LH
Sbjct: 139 LDSNAKPNKKDLS-GNTPLIYACSGGHHELVALLLQHGAS------INASNNKGNTALHE 191
Query: 130 ATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQ 174
A + K +VELL+ ++ +++ NK+ +TA+ NS+
Sbjct: 192 AVIEKHVFVVELLLLHGASVQVL------NKRQRTAVDCAEQNSK 230
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 53 PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
PLH AA G +++ L+ + + + G T LHLA + + L+
Sbjct: 50 PLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD--- 105
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN 172
KD G T LHLA +IVE+L++ ++ +N +K G+TA + N
Sbjct: 106 ---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD------VNAQDKFGKTAFDISINN 156
Query: 173 SQDSV 177
+ +
Sbjct: 157 GNEDL 161
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 16 GETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPE 75
G T +HL + G +V + +N ++ + DN + PLH AA G +++ L+ +
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGIT-PLHLAANRGHLEIVEVLLKYGAD 138
Query: 76 SLEKLTSNGETALHLAVKKSRSDAFQAL 103
+ G+TA +++ D + L
Sbjct: 139 -VNAQDKFGKTAFDISINNGNEDLAEIL 165
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 53 PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
PLH AA G +++ L+ + + S G T LHLA + + + L+
Sbjct: 50 PLHLAAYFGHLEIVEVLLKNGAD-VNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD--- 105
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN 172
D G T LHLA +IVE+L++ ++ +N +K G+TA +
Sbjct: 106 ---VNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD------VNAQDKFGKTAFDI---- 152
Query: 173 SQDSVFKEIGWIIQR 187
S D+ +++ I+Q+
Sbjct: 153 SIDNGNEDLAEILQK 167
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 51 MIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSH 110
+ PLH G ++I L+ + + +G T LHLA + + + L+
Sbjct: 48 ITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD- 105
Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCN 170
D +G T LHLA + +IVE+L++ ++ +N +K G+TA +
Sbjct: 106 -----VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD------VNAQDKFGKTAFDISI 154
Query: 171 ANSQDSV 177
N + +
Sbjct: 155 DNGNEDL 161
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 54 LHRAALEGDSDVIRALVSICPESLEKLTSN---GETALHLAVKKSRSDAFQALVDEAKSH 110
L AA G D +R L++ + + +N G T LHL V + + L+ A
Sbjct: 18 LLEAARAGQDDEVRILMANGAD----VNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD- 72
Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
DK G T LHLA +IVE+L++ ++ +N ++ QG T L L
Sbjct: 73 -----VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD------VNAMDYQGYTPLHLA 120
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 17/132 (12%)
Query: 56 RAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHL 115
AA G D +R L++ + + G T LHLA + + L+
Sbjct: 20 EAARAGQDDEVRILMANGAD-VNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD------ 72
Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQD 175
D +G+T LHLA L +IVE+L++ ++ +N +K G+TA + S D
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD------VNAQDKFGKTAFDI----SID 122
Query: 176 SVFKEIGWIIQR 187
+ +++ I+Q+
Sbjct: 123 NGNEDLAEILQK 134
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
G TALH A + S + LV E S++ + +D++G T + LA ++V LI
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDK-----QDEDGKTPIXLAAQEGRIEVVXYLI 333
Query: 144 RENSNRRIMIRINTVNKQGQTALQLCNANSQDSV 177
++ ++ + V+ TA QL AN+ ++
Sbjct: 334 QQGAS------VEAVDATDHTARQLAQANNHHNI 361
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 54 LHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKE 113
LH AA + +++ LV + +K +G+T + LA ++ R + L+ + S
Sbjct: 283 LHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS---- 338
Query: 114 HLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
D +T LA N IV++ R
Sbjct: 339 --VEAVDATDHTARQLAQANNHHNIVDIFDR 367
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 54 LHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKE 113
L AA G D +R L++ + + L +G T LHLA + + + L+ E
Sbjct: 18 LLEAARAGQDDEVRILMANGAD-VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 114 HLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANS 173
D G T LHLA + +IVE+L++ ++ +N +K G+TA + S
Sbjct: 77 ------DNFGITPLHLAAIRGHLEIVEVLLKHGAD------VNAQDKFGKTAFDI----S 120
Query: 174 QDSVFKEIGWIIQR 187
D+ +++ I+Q+
Sbjct: 121 IDNGNEDLAEILQK 134
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
G TALHLA SRSDA + L++ + +D G T LH A + + ++LI
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASAD------ANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 144 R 144
R
Sbjct: 111 R 111
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVF 178
KDK+G T LHLA +IVE+L++ ++ +N +K G+TA + S D+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAQDKFGKTAFDI----SIDNGN 80
Query: 179 KEIGWIIQRAV 189
+++ I+Q+A
Sbjct: 81 EDLAEILQKAA 91
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 53 PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
PLH AA G D+ LV +++ + + T L A + + +A + L+ +
Sbjct: 14 PLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLI------KA 66
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
L KD EG+T LHLA ++V+ L+
Sbjct: 67 GALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 16/111 (14%)
Query: 53 PLHRAA----LEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAK 108
PL AA LE +I+A + P+ E G T LHLA KK + Q L+ +
Sbjct: 47 PLMEAAENNHLEAVKYLIKAGALVDPKDAE-----GSTCLHLAAKKGHYEVVQYLLSNGQ 101
Query: 109 SHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN 159
+D G T + AT K +V+LL+ + S+ I IR N N
Sbjct: 102 MD-----VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD--INIRDNEEN 145
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 27/174 (15%)
Query: 8 LASIKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIR 67
L K+ G T +HL + G +V+ N + D+ P+ A D+++
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 68 ALVSICPESLEKLTSNGET-ALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWK------D 120
L+S S + N E LH A AF VD A E L K +
Sbjct: 129 LLLS--KGSDINIRDNEENICLHWA-------AFSGCVDIA-----EILLAAKCDLHAVN 174
Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQ 174
G++ LH+A V L + +S+ + NK+G+T LQ + NSQ
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLSRDSD------VTLKNKEGETPLQCASLNSQ 222
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 53 PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
PL AA E D + L+ + + + GETALH+A +A L++ A
Sbjct: 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN 148
E + T + EG T LH+A +N+ +V L+ ++
Sbjct: 66 EPM-TSELYEGQTALHIAVINQNVNLVRALLARGAS 100
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 26/190 (13%)
Query: 12 KNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMI----PLHRAALEGDSDVIR 67
+ GET +H+ + + + E EL E S + LH A + + +++R
Sbjct: 33 RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92
Query: 68 ALV------------SICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHL 115
AL+ S+ L GE L A + + L++ R +
Sbjct: 93 ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ-- 150
Query: 116 FTWKDKEGNTVLHLATLNKLK----QIVELLIRENSNRRIMIRINTVNKQGQTALQLCNA 171
D GNTVLH+ L K Q+ LL+ + + N QG T +L
Sbjct: 151 ----DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGV 206
Query: 172 NSQDSVFKEI 181
+F+ +
Sbjct: 207 EGNIVMFQHL 216
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 13 NQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSI 72
N RGET +H+ S GD V +N + ++ D++ PLH A G V+ L+
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQ- 64
Query: 73 CPESLEKLTS-NGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWK 119
++L T ++ LH A K D + L+ S ++F +
Sbjct: 65 -HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLR 111
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 33.5 bits (75), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 85 ETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
E LHLAVK + + A LVD + HL K +GNT LH A L ++LL++
Sbjct: 191 ELVLHLAVKVA-NQASLPLVDFIIQNGG-HL-DAKAADGNTALHYAALYNQPDCLKLLLK 247
Query: 145 ENSNRRIMIRINTVNKQGQTALQL 168
+ + TVN+ G+TAL +
Sbjct: 248 GRA------LVGTVNEAGETALDI 265
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 85 ETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
E LHLAVK + + A LVD + HL K +GNT LH A L ++LL++
Sbjct: 172 ELVLHLAVKVA-NQASLPLVDFIIQN-GGHLDA-KAADGNTALHYAALYNQPDCLKLLLK 228
Query: 145 ENSNRRIMIRINTVNKQGQTALQL 168
+ + TVN+ G+TAL +
Sbjct: 229 GRA------LVGTVNEAGETALDI 246
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
+DK G T LHLA +N +IVE+L++ ++ +N ++ G+T L L
Sbjct: 43 EDKVGLTPLHLAAMNDHLEIVEVLLKNGAD------VNAIDAIGETPLHLV 87
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
G T LHLA + + L+ D G T LHL + +IVE+L+
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGAD------VNAIDAIGETPLHLVAMYGHLEIVEVLL 100
Query: 144 RENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKEIGWIIQR 187
+ ++ +N +K G+TA + S D+ +++ I+Q+
Sbjct: 101 KHGAD------VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 134
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 115 LFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
+F + ++G+T LHLA +++ + ++ L+ ++ + + N GQTAL L
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYL---DLQNDLGQTALHL 51
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 80 LTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIV 139
+T +G+TALHLAV L+ + H E+L D G T LHLA + V
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGH--EYLDLQNDL-GQTALHLAAILGEASTV 61
Query: 140 ELLIRENSNRRIMIRINTVNKQGQTALQL 168
E L + + + G TAL L
Sbjct: 62 EKLYAAGAG------VLVAERGGHTALHL 84
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 77 LEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLK 136
LE +G T LH+AV ++ + L D K + G T LHLA +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP-----EPTCGRTPLHLAVEAQAA 205
Query: 137 QIVELLIRENSN 148
++ELL++ ++
Sbjct: 206 SVLELLLKAGAD 217
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 115 LFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQL 168
+F + ++G+T LHLA +++ + ++ L+ ++ + + N GQTAL L
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYL---DLQNDLGQTALHL 51
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 80 LTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIV 139
+T +G+TALHLAV L+ + H E+L D G T LHLA + V
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGH--EYLDLQNDL-GQTALHLAAILGEASTV 61
Query: 140 ELLIRENSNRRIMIRINTVNKQGQTALQL 168
E L + + + G TAL L
Sbjct: 62 EKLYAAGAG------VLVAERGGHTALHL 84
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 77 LEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLK 136
LE +G T LH+AV ++ + L D K + G T LHLA +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP-----EPTCGRTPLHLAVEAQAA 205
Query: 137 QIVELLIRENSN 148
++ELL++ ++
Sbjct: 206 SVLELLLKAGAD 217
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSV 177
KDK G+T LHLA N ++V+LL+ ++ +N +K G+TA + N + +
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD------VNAQDKFGKTAFDISIDNGNEDL 87
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 12/125 (9%)
Query: 54 LHRAALEGDSDVIRALV--SICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSH- 110
+H AA +G +D +R L+ + P + G TALHLA K D + L + H
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRF---GCTALHLACKFGCVDTAKYLASVGEVHS 80
Query: 111 -----RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI-MIRINTVNKQGQT 164
+ HL +K V + + Q E L+ E R + I + + +GQT
Sbjct: 81 LWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQT 140
Query: 165 ALQLC 169
AL C
Sbjct: 141 ALHWC 145
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 61 GDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD 120
G D +R L++ + + + G T LHLA K+ + + L+ +D
Sbjct: 25 GQDDEVRILMANGAD-VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD------VNARD 77
Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSV 177
G T LHLA +IVE+L+ ++ +N +K G+TA + N + +
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGAD------VNAQDKFGKTAFDISIDNGNEDL 128
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 79 KLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQI 138
K + G+TAL LAV R D +AL+ E +D +G+T L A + K+I
Sbjct: 178 KASQAGQTALMLAVSHGRVDVVKALL------ACEADVNVQDDDGSTALMCACEHGHKEI 231
Query: 139 VELLIRENSNRRIMIRINTVNKQGQTALQL 168
LL+ S I+ ++ G TAL +
Sbjct: 232 AGLLLAVPS-----CDISLTDRDGSTALMV 256
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 18/106 (16%)
Query: 82 SNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLK--QIV 139
SNG TALH +V + Q L+D + +++ G + + L L LK +
Sbjct: 109 SNGNTALHYSVSHANFPVVQQLLDSGVCKVDK-----QNRAGYSPIMLTALATLKTQDDI 163
Query: 140 ELLIRENSNRRIMIRINTVNKQ----GQTALQLCNANSQDSVFKEI 181
E +++ + R+ +N + GQTAL L ++ + V K +
Sbjct: 164 ETVLQ-------LFRLGNINAKASQAGQTALMLAVSHGRVDVVKAL 202
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 61 GDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKD 120
G D +R L++ + + + G T LHLA K+ + + L+ D
Sbjct: 25 GQDDEVRILMANGAD-VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD------VNASD 77
Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFKE 180
G T LHLA +IVE+L+ ++ +N +K G+TA + S D+ ++
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGAD------VNAQDKFGKTAFDI----SIDNGNED 127
Query: 181 IGWIIQR 187
+ I+Q+
Sbjct: 128 LAEILQK 134
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 11 IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
+K++ G +H + G ++ EN ++ +E DN +PLH AA EG V+ LV
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 71 SICPESLEKLTSNGETALHLAVKKSRSD 98
++ G+TA LA R++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNE 151
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
G +H A + D Q L++ +D EGN LHLA ++VE L+
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQAD------VNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 144 RENSNRRIMIRINTVNKQGQTALQLCNANSQDSV 177
+ ++ + N +G TA L ++ V
Sbjct: 124 KHTAS-----NVGHRNHKGDTACDLARLYGRNEV 152
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 47 DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
D S P+H AA G D ++ LV + + G +HLAV++ + L E
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123
Query: 107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
+ HR +D G T L LA + +V++L
Sbjct: 124 SDLHR-------RDARGLTPLELALQRGAQDLVDIL 152
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 47 DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDE 106
D S P+H AA G D ++ LV + + G +HLAV++ + L E
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE 129
Query: 107 AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
+ HR +D G T L LA + +V++L
Sbjct: 130 SDLHR-------RDARGLTPLELALQRGAQDLVDIL 158
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSVFK 179
++EG T LH A IV+ LI +N +N+ + G T L C A+ D+V
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGAN------VNSPDSHGWTPLH-CAASCNDTVIC 103
Query: 180 EIGWIIQRAVAQQSPQLPDAGSA 202
++Q A + L D +A
Sbjct: 104 MA--LVQHGAAIFATTLSDGATA 124
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQDSV 177
KDK G+T LHLA N ++V+LL+ ++ + +K G+TA + N + +
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD------VXAQDKFGKTAFDISIDNGNEDL 105
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 53 PLHRAALEGDSDVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSH 110
PLH AA G+ +R + + L+K G TAL+ A D + L +
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKA---GSTALYWACHGGHKDIVEXLFTQPNIE 132
Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS 147
+ ++K G+T LH A IV+LL+ + +
Sbjct: 133 LNQ-----QNKLGDTALHAAAWKGYADIVQLLLAKGA 164
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 13/125 (10%)
Query: 53 PLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALVDEAKSHRK 112
PLH AA G L+ S + T T LH+A + ++ + L+
Sbjct: 37 PLHLAAQYGHFSTTEVLLR-AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD--- 92
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNAN 172
KD T LH AT + +++VELLI+ ++ ++T +K +TA + N
Sbjct: 93 ---VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD------VHTQSKFCKTAFDISIDN 143
Query: 173 SQDSV 177
+ +
Sbjct: 144 GNEDL 148
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHL-FTWKDKEGNTVLHLATLNKLKQIVELL 142
G+T L LAV+K Q L+++ EH+ D +G T L LA KLK+I ELL
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQ------EHIEINDTDSDGKTALLLAVELKLKKIAELL 272
Query: 143 IRENSN 148
+ ++
Sbjct: 273 CKRGAS 278
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHL-FTWKDKEGNTVLHLATLNKLKQIVELL 142
G+T L LAV+K Q L+++ EH+ D +G T L LA KLK+I ELL
Sbjct: 239 GKTPLILAVEKKHLGLVQRLLEQ------EHIEINDTDSDGKTALLLAVELKLKKIAELL 292
Query: 143 IRENSN 148
+ ++
Sbjct: 293 CKRGAS 298
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 80 LTSNGETALHLAVKKSR-SDAFQALV---DEAKSHRK---------EHLFTWKDKEGNTV 126
+ G+ + + + R SDA Q L D++ S++K E ++D G+
Sbjct: 177 IQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVT 236
Query: 127 LHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQ 161
H A ++ + + L R++S + +NT+ K+
Sbjct: 237 FHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKR 271
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
D G T LH+A +IVE+L+R ++ +N V+ G T L L
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGAD------VNAVDTNGTTPLHLA 75
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
G +H A + + D Q L++ +D EGN LHLA ++VE L+
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 144 RENSNRRIMIRINTVNKQGQTALQLCNANSQDSV 177
+ ++ + N +G TA L ++ V
Sbjct: 124 KHTAS-----NVGHRNHKGDTACDLARLYGRNEV 152
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 11 IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
+K++ G +H + G ++ E ++ +E DN +PLH AA EG V+ LV
Sbjct: 65 LKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 71 SICPESLEKLTSNGETALHLAVKKSRSD 98
++ G+TA LA R++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
KD+ G T L+LAT + +IVE+L++ ++ +N V+ G T L L
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLLKNGAD------VNAVDAIGFTPLHLA 87
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
G +H A + D Q L++ +D EGN LHLA ++VE L+
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 144 RENSNRRIMIRINTVNKQGQTALQLCNANSQDSV 177
+ ++ + N +G TA L ++ V
Sbjct: 124 KHTAS-----NVGHRNHKGDTACDLARLYGRNEV 152
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 11 IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
+K++ G +H + G ++ E ++ +E DN +PLH AA EG V+ LV
Sbjct: 65 LKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 71 SICPESLEKLTSNGETALHLAVKKSRSD 98
++ G+TA LA R++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|2J66|A Chain A, Structural Characterisation Of Btrk Decarboxylase From
Butirosin Biosynthesis
Length = 428
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 131 TLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLCNANSQ 174
++ +L I EL +EN R+ IRIN G TA+++ Q
Sbjct: 115 SVEELFYIEELAEKENKTARVAIRINPDKSFGSTAIKMGGVPRQ 158
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
G +H A + D Q L++ +D EGN LHLA ++VE L+
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 144 RENSNRRIMIRINTVNKQGQTALQLCNANSQDSV 177
+ ++ + N +G TA L ++ V
Sbjct: 124 KHTAS-----NVGHRNHKGDTACDLARLYGRNEV 152
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 11 IKNQRGETTMHLLSTDGDARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALV 70
+K++ G +H + G ++ E ++ +E DN +PLH AA EG V+ LV
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 71 SICPESLEKLTSNGETALHLAVKKSRSD 98
++ G+TA LA R++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 45 EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
E D L+ AA GD + ++ L ++ + + T LH A +R + L+
Sbjct: 7 EADRQLL----EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 105 DEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS 147
KDK G LH A ++ ELL++ +
Sbjct: 63 QHGAD------VHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 99
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 21/90 (23%)
Query: 85 ETALHLAVKKSRSDAFQALVDEAKSHRKEHL------FTWKDKEGNTVLHLATLNKLKQI 138
ETALHLAV+ VD H + L + +G+T LH L +
Sbjct: 170 ETALHLAVRS---------VDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220
Query: 139 VELLIRENSNRRIMIRINTVNKQGQTALQL 168
++LL+R ++ I N+ G+T L +
Sbjct: 221 LKLLLRGKAS------IEIANESGETPLDI 244
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 45 EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
E D L+ AA GD + ++ L ++ + + T LH A +R + L+
Sbjct: 9 EADRQLL----EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 64
Query: 105 DEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS 147
KDK G LH A ++ ELL++ +
Sbjct: 65 QHGAD------VHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 101
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 84 GETALHLAVKKSRSDAFQALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
G +H A + D Q L++ +D EGN LHLA ++VE L+
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 144 RENSNRRIMIRINTVNKQGQTALQLCNANSQDSV 177
+ ++ + N +G TA L ++ V
Sbjct: 124 KHTAS-----NVGHRNHKGDTACDLARLYGRNEV 152
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 47 DNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSD 98
DN +PLH AA EG V+ LV ++ G+TA LA R++
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 61 GDSDVIRALVSICPESLEKLT-------SNGETALH---LAVKKSRSDAFQALVDEAKSH 110
G D + L+S ++LT S G+T L L + R+D L+D A+
Sbjct: 16 GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75
Query: 111 RKEHLFT---WKD--KEGNTVLHLATLNKLKQIVELLIRENSN 148
F ++D G T LH+A + K VELL+ + ++
Sbjct: 76 GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD 118
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 45 EVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFQALV 104
E D L+ AA GD + ++ L ++ + + T LH A +R + L+
Sbjct: 11 EADRQLL----EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 66
Query: 105 DEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS 147
KDK G LH A ++ ELL++ +
Sbjct: 67 QHGAD------VHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 103
>pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima
pdb|4A2A|A Chain A, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2A|B Chain B, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2B|A Chain A, Thermotoga Maritima Ftsa With Atp Gamma S
Length = 419
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 22/67 (32%)
Query: 28 DARMVRIFGENNRELCLEVDNSLMIPLHRAALEGDSDVIRALVSICPESLEKLTSNGETA 87
D + R FGE R + L++ L + E+LEKL NG+T
Sbjct: 92 DTVIERDFGEEKRSITLDI----------------------LSEMQSEALEKLKENGKTP 129
Query: 88 LHLAVKK 94
LH+ K+
Sbjct: 130 LHIFSKR 136
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 27.3 bits (59), Expect = 8.0, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 93 KKSRSDAFQALVDE---AKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNR 149
+K R F + ++E + KEHL KDK+ + +A L+++K + L+ N
Sbjct: 539 EKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNT 598
Query: 150 RIMIRINTV 158
R+ N V
Sbjct: 599 RLRELANLV 607
>pdb|3LWT|X Chain X, Crystal Structure Of The Yeast Sac1: Implications For Its
Phosphoinositide Phosphatase Function
Length = 505
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 101 QALVDEAKSHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS 147
Q L+ E K H+F++ G+ ++ A +N LK L++ ENS
Sbjct: 236 QILLAENPESEKIHVFSFLQTRGSVPIYWAEINNLKYKPNLVLGENS 282
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKQGQTALQLC 169
D G+T LHLA + +IVE+L++ ++ +N G+T L L
Sbjct: 44 DYWGHTPLHLAAMLGHLEIVEVLLKNGAD------VNATGNTGRTPLHLA 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,386,331
Number of Sequences: 62578
Number of extensions: 228979
Number of successful extensions: 1218
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 200
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)