BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037086
(426 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
Length = 861
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 148/430 (34%), Positives = 216/430 (50%), Gaps = 32/430 (7%)
Query: 5 LKGIKVVLTHV-EYNRSYKITGISSQPMSQLMFI--DDNG--TRMSVIQYFLEKSNIALQ 59
+KG+KV +TH + R Y++ ++ +P S F ++G +V QYF ++ + L+
Sbjct: 264 IKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLR 323
Query: 60 FTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRM 119
+ LP + G E + YLP+E+ IVAGQR K+ + Q + ++RAT + +R+E I
Sbjct: 324 YPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISK 383
Query: 120 MTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASV-NPGFGQWNMI 178
+ R+ ++N D V REFGI V D +T V R+L P + Y GR ++ P G W+M
Sbjct: 384 LMRSASFNTDPYV-REFGIMVKDEMTDVTGRVLQPPSILY--GGRNKAIATPVQGVWDMR 440
Query: 179 NKKMFNGGRVEVWTCVNFSTDLD-PDVPFQ-FCQGLVDVCNSKGMVFNPRPVIPISSSNP 236
NK+ G ++VW F+ +V + F + L + GM +P +
Sbjct: 441 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGA 500
Query: 237 NQIEKALVDVHNRTTXXXXXXXXXXXXXPDDKGSYGRIKRVCETELGIVSQCCQPKQASK 296
+ +E + N P Y +KRV +T LG+ +QC Q K +
Sbjct: 501 DSVEPMFRHLKN----TYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQR 556
Query: 297 LSMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSI 356
+ Q N+ LKINVK+GG N +L+ Q R P V +P I GADVTHP G+ PSI
Sbjct: 557 TTPQTLSNLCLKINVKLGGVNNILLP--QGRPP-VFQQPVIFLGADVTHPPAGDGKKPSI 613
Query: 357 AAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRST 416
AAVV SMD +Y V Q +EIIQDL M+RELLI F +ST
Sbjct: 614 AAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYKST 659
Query: 417 NRKPESIIFY 426
KP IIFY
Sbjct: 660 RFKPTRIIFY 669
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
Length = 859
Score = 224 bits (571), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 148/430 (34%), Positives = 215/430 (50%), Gaps = 32/430 (7%)
Query: 5 LKGIKVVLTHV-EYNRSYKITGISSQPMSQLMFI--DDNG--TRMSVIQYFLEKSNIALQ 59
+KG+KV +TH + R Y++ ++ +P S F ++G +V QYF ++ + L+
Sbjct: 262 IKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLR 321
Query: 60 FTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRM 119
+ LP + G E + YLP+E+ IVAGQR K+ + Q + ++RAT + +R+E I
Sbjct: 322 YPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISK 381
Query: 120 MTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASV-NPGFGQWNMI 178
+ R+ +N D V REFGI V D +T V R+L P + Y GR ++ P G W+M
Sbjct: 382 LMRSADFNTDPYV-REFGIMVKDEMTDVTGRVLQPPSILY--GGRNKAIATPVQGVWDMR 438
Query: 179 NKKMFNGGRVEVWTCVNFSTDLD-PDVPFQ-FCQGLVDVCNSKGMVFNPRPVIPISSSNP 236
NK+ G ++VW F+ +V + F + L + GM +P +
Sbjct: 439 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGA 498
Query: 237 NQIEKALVDVHNRTTXXXXXXXXXXXXXPDDKGSYGRIKRVCETELGIVSQCCQPKQASK 296
+ +E + N P Y +KRV +T LG+ +QC Q K +
Sbjct: 499 DSVEPMFRHLKN----TYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQR 554
Query: 297 LSMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSI 356
+ Q N+ LKINVK+GG N +L+ Q R P V +P I GADVTHP G+ PSI
Sbjct: 555 TTPQTLSNLCLKINVKLGGVNNILLP--QGRPP-VFQQPVIFLGADVTHPPAGDGKKPSI 611
Query: 357 AAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRST 416
AAVV SMD +Y V Q +EIIQDL M+RELLI F +ST
Sbjct: 612 AAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYKST 657
Query: 417 NRKPESIIFY 426
KP IIFY
Sbjct: 658 RFKPTRIIFY 667
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
pdb|4G0O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
Length = 139
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 100/142 (70%), Gaps = 4/142 (2%)
Query: 179 NKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQ 238
+KKM NG +V WTCV+FST +D +P +FC+ L+ +C SKGM F P+P IP S P
Sbjct: 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEH 61
Query: 239 IEKALVDVHNRTTXXXXXXXXXXXXXPDDKGSYGRIKRVCETELGIVSQCCQPKQASKLS 298
IE+AL+D+H R PD GSYG+IKR+CETELGIVSQCCQP+Q +KL+
Sbjct: 62 IEEALLDIHKRAPGLQLLIVIL----PDVTGSYGKIKRICETELGIVSQCCQPRQVNKLN 117
Query: 299 MQYFENVALKINVKVGGRNTVL 320
QY ENVALKINVK GGRNTVL
Sbjct: 118 KQYMENVALKINVKTGGRNTVL 139
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
Binding By Arabidopsis Ago Mid Domains
Length = 154
Score = 147 bits (372), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 92/148 (62%), Gaps = 4/148 (2%)
Query: 178 INKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPN 237
+NKKM NGG V W C+NFS + ++ FCQ L +C GM FNP PV+P S+ P
Sbjct: 1 MNKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPE 60
Query: 238 QIEKAL-VDVHNRTTXXXXXXX--XXXXXXPDDKGS-YGRIKRVCETELGIVSQCCQPKQ 293
Q+EK L H+ T+ PD+ GS YG +KR+CETELGIVSQCC K
Sbjct: 61 QVEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKH 120
Query: 294 ASKLSMQYFENVALKINVKVGGRNTVLV 321
K+S QY NVALKINVKVGGRNTVLV
Sbjct: 121 VFKMSKQYMANVALKINVKVGGRNTVLV 148
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
Binding By Arabidopsis Ago Domains
Length = 155
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 91/149 (61%), Gaps = 5/149 (3%)
Query: 178 INKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPN 237
+NKKM NGG V W C+NFS + ++ FCQ L +C GM FNP PV+P S+ P
Sbjct: 1 MNKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPE 60
Query: 238 QIEKAL-VDVHNRTTXXXXXXX--XXXXXXPDDKGS--YGRIKRVCETELGIVSQCCQPK 292
Q+EK L H+ T+ PD K S YG +KR+CETELGIVSQCC K
Sbjct: 61 QVEKVLKTRYHDATSKLSQGKEIDLLIVILPDKKNSDLYGDLKRICETELGIVSQCCLTK 120
Query: 293 QASKLSMQYFENVALKINVKVGGRNTVLV 321
K+S QY NVALKINVKVGGRNTVLV
Sbjct: 121 HVFKMSKQYMANVALKINVKVGGRNTVLV 149
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Ump
pdb|4G0Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Cmp
pdb|4G0Y|A Chain A, Crystal Structure Of Arabidopsis Ago1 In Complex With Amp
pdb|4G0Z|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Gmp
Length = 147
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 90/146 (61%), Gaps = 4/146 (2%)
Query: 179 NKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQ 238
NKKM NGG V W C+NFS + ++ FCQ L +C GM FNP PV+P S+ P Q
Sbjct: 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQ 61
Query: 239 IEKAL-VDVHNRTTXXXXXXX--XXXXXXPDDKGS-YGRIKRVCETELGIVSQCCQPKQA 294
+EK L H+ T+ PD+ GS YG +KR+CETELGIVSQCC K
Sbjct: 62 VEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHV 121
Query: 295 SKLSMQYFENVALKINVKVGGRNTVL 320
K+S QY NVALKINVKVGGRNTVL
Sbjct: 122 FKMSKQYMANVALKINVKVGGRNTVL 147
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
Length = 147
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 86/146 (58%), Gaps = 4/146 (2%)
Query: 179 NKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQ 238
NKK NGG V W C+NFS + ++ FCQ L C G FNP PV+P S+ P Q
Sbjct: 2 NKKXINGGTVNNWICINFSRQVQDNLARTFCQELAQXCYVSGXAFNPEPVLPPVSARPEQ 61
Query: 239 IEKAL-VDVHNRTTXXXXXXX--XXXXXXPDDKGS-YGRIKRVCETELGIVSQCCQPKQA 294
+EK L H+ T+ PD+ GS YG +KR+CETELGIVSQCC K
Sbjct: 62 VEKVLKTRYHDATSKLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHV 121
Query: 295 SKLSMQYFENVALKINVKVGGRNTVL 320
K S QY NVALKINVKVGGRNTVL
Sbjct: 122 FKXSKQYXANVALKINVKVGGRNTVL 147
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz
Domain
Length = 169
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
Query: 3 EALKGIKVVLTHV-EYNRSYKITGISSQP--MSQLMFIDDNG--TRMSVIQYFLEKSNIA 57
+ +KG+K+ +TH + R Y++ ++ +P M +NG +V +YFL+K +
Sbjct: 40 KEIKGLKIEITHCGQMRRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMK 99
Query: 58 LQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENI 117
L++ LP + G E + YLP+E+ IVAGQR K+ + Q + +++AT + +RE I
Sbjct: 100 LRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREI 159
Query: 118 RMMTRANAYN 127
+ + +N
Sbjct: 160 NNLVKRADFN 169
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In
Complex With A 9-Mer Sirna-Like Duplex Of
Deoxynucleotide Overhang
Length = 149
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
Query: 5 LKGIKVVLTHV-EYNRSYKITGISSQPMSQLMF---IDDNGT-RMSVIQYFLEKSNIALQ 59
+KG+KV +TH + R Y++ ++ +P S F ++ T +V QYF +K N+ L+
Sbjct: 40 IKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLK 99
Query: 60 FTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRAT 106
+ LP + G E + YLP+E+ IVAGQR K+ + Q + +++AT
Sbjct: 100 YPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKAT 146
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In
Complex With A 9-Mer Sirna-Like Duplex
Length = 149
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 5 LKGIKVVLTHV-EYNRSYKITGISSQPMSQLMF---IDDNGT-RMSVIQYFLEKSNIALQ 59
+KG+KV +TH + R Y++ ++ +P S F ++ T +V QYF +K N+ L+
Sbjct: 40 IKGLKVEVTHCGQXKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLK 99
Query: 60 FTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRAT 106
+ LP + G E + YLP+E+ IVAGQR K+ + Q + ++AT
Sbjct: 100 YPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTXIKAT 146
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 437
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 187 RVEVWTCVNF-STDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVD 245
++E WT + + + VP Q + N G+ NPR +S S P ++
Sbjct: 13 KIEKWTYLELKGSKANEGVP-QAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEFFAK 71
Query: 246 VHNRTTXXXXXXXXXXXXXPDDKGSYGRIKRVCETELGIVSQCCQPKQ--ASKLSMQYFE 303
V + D Y +KR + G+ + CC ++ ++K + YF
Sbjct: 72 VKELMSSHQFVVVLLPR---KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFA 128
Query: 304 NVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQ-----RGEDSSPSIAA 358
NV LK+N+K GG N ++ IPL+ T++ G DVTHP + S+PSI
Sbjct: 129 NVGLKVNLKFGGTN----HNIKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVG 184
Query: 359 VVASMD-----WPEV 368
+V+++D WP +
Sbjct: 185 LVSTIDQHLGQWPAM 199
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 388
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 187 RVEVWTCVNF-STDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVD 245
++E WT + + + VP Q + N G+ NPR +S S P ++
Sbjct: 13 KIEKWTYLELKGSKANEGVP-QAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEFFAK 71
Query: 246 VHNRTTXXXXXXXXXXXXXPDDKGSYGRIKRVCETELGIVSQCCQPKQ--ASKLSMQYFE 303
V + D Y +KR + G+ + CC ++ ++K + YF
Sbjct: 72 VKELMSSHQFVVVLLPR---KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFA 128
Query: 304 NVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQ-----RGEDSSPSIAA 358
NV LK+N+K GG N ++ IPL+ T++ G DVTHP + S+PSI
Sbjct: 129 NVGLKVNLKFGGTN----HNIKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVG 184
Query: 359 VVASMD-----WPEV 368
+V+++D WP +
Sbjct: 185 LVSTIDQHLGQWPAM 199
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain
pdb|4G0M|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain
Length = 150
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 180 KKMFNGGRVEVWTCVNFS-TDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISS----- 233
K + G V+ W ++F+ ++ +P F L+D C GM P++ +S
Sbjct: 3 KGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEA-PIVYKTSRMETL 61
Query: 234 SNPNQIE---KALVDVHNRTTXXXXXXXXXXXXXPDDKGSYGRIKRVCETELGIVSQCCQ 290
SN N IE ++++D +R D G Y +K + ET+LG+V+QC
Sbjct: 62 SNGNAIEELLRSVIDEASRKHGGARPTLVLCAMSRKDDG-YKTLKWIAETKLGLVTQCFL 120
Query: 291 PKQASKLSMQYFENVALKINVKVGGRNTVL 320
A+K QY N+ALK+N KVGG N L
Sbjct: 121 TGPATKGGDQYRANLALKMNAKVGGSNVEL 150
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
Length = 1046
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 21/165 (12%)
Query: 266 DDKGSYGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVGGRNTVL-VDAV 324
+D Y R+K + + + G ++ C K S+QY NV +K+N+K+ G N L ++
Sbjct: 692 NDSAVYDRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIENN 751
Query: 325 QKRIPLVTDRPTIIFGADVTH-PQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQ-ARHE 382
+ I ++ P ++ G+DVTH P++ ++ SIA++V S D + T++ G Q E
Sbjct: 752 KLLIDKESNLPILVLGSDVTHYPEKDQN---SIASLVGSYD-DKFTQFPGDYMLQDGPGE 807
Query: 383 EIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRSTNRK-PESIIFY 426
EII ++ G ++ L + + N K P I+++
Sbjct: 808 EIITNV-------------GSLMLNRLKIYQKHNNGKLPTKIMYF 839
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2
pdb|3LUC|B Chain B, Crystal Structure Of Mid Domain From Hago2
pdb|3LUC|C Chain C, Crystal Structure Of Mid Domain From Hago2
pdb|3LUD|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUD|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUD|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUG|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUG|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUG|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUH|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUH|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUH|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUJ|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3LUJ|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3LUJ|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3QX8|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX8|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX8|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX9|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
pdb|3QX9|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
pdb|3QX9|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
Length = 138
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 6/141 (4%)
Query: 179 NKKMFNGGRVEVWTCVNFSTDLD-PDVPFQ-FCQGLVDVCNSKGMVFNPRPVIPISSSNP 236
NK+ G ++VW F+ +V + F + L + GM +P +
Sbjct: 2 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGA 61
Query: 237 NQIEKALVDVHNRTTXXXXXXXXXXXXXPDDKGSYGRIKRVCETELGIVSQCCQPKQASK 296
+ +E + N P Y +KRV +T LG+ +QC Q K +
Sbjct: 62 DSVEPMFRHLKN----TYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQR 117
Query: 297 LSMQYFENVALKINVKVGGRN 317
+ Q N+ LKINVK+GG N
Sbjct: 118 TTPQTLSNLCLKINVKLGGVN 138
>pdb|1VYN|A Chain A, Structure And Nucleic Acid Binding Of The Drosophila
Argonaute2 Paz Domain
Length = 143
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 1 VEEALKGIKVVLTHVEYNRS----YKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNI 56
+E L+GI VV T + +S Y++ G+S P S F D G ++++ YF + N
Sbjct: 33 LEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD-GKKVTIASYFHSR-NY 90
Query: 57 ALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLR 104
L+F L + GS + I LP+EL I GQ ++ QV +++
Sbjct: 91 PLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIK 138
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2
pdb|3LUK|B Chain B, Crystal Structure Of Mid Domain From Hago2
pdb|3LUK|C Chain C, Crystal Structure Of Mid Domain From Hago2
Length = 138
Score = 48.1 bits (113), Expect = 8e-06, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 6/141 (4%)
Query: 179 NKKMFNGGRVEVWTCVNFSTDLD-PDVPFQ-FCQGLVDVCNSKGMVFNPRPVIPISSSNP 236
NK+ G ++VW F+ +V + F + L + G +P +
Sbjct: 2 NKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGXPIQGQPCFCKYAQGA 61
Query: 237 NQIEKALVDVHNRTTXXXXXXXXXXXXXPDDKGSYGRIKRVCETELGIVSQCCQPKQASK 296
+ +E + N P Y +KRV +T LG +QC Q K +
Sbjct: 62 DSVEPXFRHLKNTYAGLQLVVVILPGKTP----VYAEVKRVGDTVLGXATQCVQXKNVQR 117
Query: 297 LSMQYFENVALKINVKVGGRN 317
+ Q N+ LKINVK+GG N
Sbjct: 118 TTPQTLSNLCLKINVKLGGVN 138
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|A Chain A, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|Z Chain Z, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
Length = 509
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 1 VEEALKGIKVVLTHVEYNRS----YKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNI 56
+E L+GI VV T + +S Y++ G+S P S F D G ++++ YF + N
Sbjct: 413 LEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD-GKKVTIASYFHSR-NY 470
Query: 57 ALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKR 93
L+F L + GS + I LP+EL I GQ ++
Sbjct: 471 PLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRK 507
>pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex
With 3'-End 2'-O-Methylated Rna
Length = 124
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 1 VEEALKGIKVVLTHVEYNRS----YKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNI 56
+E L+GI VV T + +S Y++ G+S P S F D G ++++ YF + N
Sbjct: 31 LEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD-GKKVTIASYFHSR-NY 88
Query: 57 ALQFTSLPAVLAGSEARPIYLPMELSRIVAGQ 88
L+F L + GS + I LP+EL I GQ
Sbjct: 89 PLKFPQLHCLNVGSSIKSILLPIELCSIEEGQ 120
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain
Length = 145
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 187 RVEVWTCVNF-STDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVD 245
++E WT + + + VP Q + N G+ NPR +S S P ++
Sbjct: 13 KIEKWTYLELKGSKANEGVP-QAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEFFAK 71
Query: 246 VHNRTTXXXXXXXXXXXXXPDDKGSYGRIKRVCETELGIVSQCCQPKQ--ASKLSMQYFE 303
V + D Y +KR + G+ + CC ++ ++K + YF
Sbjct: 72 VKELMSSHQFVVVLLPR---KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFA 128
Query: 304 NVALKINVKVGGRN 317
NV LK+N+K GG N
Sbjct: 129 NVGLKVNLKFGGTN 142
>pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids
By The Drosophila Argonaute 2 Paz Domain
pdb|1T2S|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids
By The Drosophila Argonaute 2 Paz Domain
Length = 123
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 1 VEEALKGIKVVLTHVEYNRS----YKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNI 56
+E L+GI VV T + +S Y++ G+S P S F + +G ++++ YF + N
Sbjct: 33 LEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETF-EHDGKKVTIASYFHSR-NY 90
Query: 57 ALQFTSLPAVLAGSEARPIYLPMELSRIVAGQ 88
L+F L + GS + I LP+EL I GQ
Sbjct: 91 PLKFPQLHCLNVGSSIKSILLPIELCSIEEGQ 122
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant
Length = 839
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 50 FLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQR 109
FLE N TSLP + AG A I+ + S + G Y K N QV L++
Sbjct: 63 FLEGIN-----TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLE 115
Query: 110 PREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVN 169
+ IR + + YN T + + I A+ T V + PAP+++Y E ++
Sbjct: 116 AISNQGTIRFVCNSWVYN--TKLYKSVRIFFAN-HTYVPSET-PAPLVEYREEELKSLRG 171
Query: 170 PGFGQ 174
G G+
Sbjct: 172 NGTGE 176
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant
Length = 839
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 50 FLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQR 109
FLE N TSLP + AG A I+ + S + G Y K N QV L++
Sbjct: 63 FLEGIN-----TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLE 115
Query: 110 PREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVN 169
+ IR + + YN T + + I A+ T V + PAP+++Y E ++
Sbjct: 116 AISNQGTIRFVCNSWVYN--TKLYKSVRIFFAN-HTYVPSET-PAPLVEYREEELKSLRG 171
Query: 170 PGFGQ 174
G G+
Sbjct: 172 NGTGE 176
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant
Length = 839
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 50 FLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQR 109
FLE N TSLP + AG A I+ + S + G Y K N QV L++
Sbjct: 63 FLEGIN-----TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLE 115
Query: 110 PREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVN 169
+ IR + + YN T + + I A+ T V + PAP+++Y E ++
Sbjct: 116 AISNQGTIRFVCNSWVYN--TKLYKSVRIFFAN-HTYVPSET-PAPLVEYREEELKSLRG 171
Query: 170 PGFGQ 174
G G+
Sbjct: 172 NGTGE 176
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement
Length = 839
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 50 FLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQR 109
FLE N TSLP + AG A I+ + S + G Y K N QV L++
Sbjct: 63 FLEGIN-----TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLE 115
Query: 110 PREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVN 169
+ IR + + YN T + + I A+ T V + PAP+++Y E ++
Sbjct: 116 AISNQGTIRFVCNSWVYN--TKLYKSVRIFFAN-HTYVPSET-PAPLVEYREEELKSLRG 171
Query: 170 PGFGQ 174
G G+
Sbjct: 172 NGTGE 176
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant
Length = 839
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 50 FLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQR 109
FLE N TSLP + AG A I+ + S + G Y K N QV L++
Sbjct: 63 FLEGIN-----TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLE 115
Query: 110 PREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVN 169
+ IR + + YN T + + I A+ T V + PAP+++Y E ++
Sbjct: 116 AISNQGTIRFVCNSWVYN--TKLYKSVRIFFAN-HTYVPSET-PAPLVEYREEELKSLRG 171
Query: 170 PGFGQ 174
G G+
Sbjct: 172 NGTGE 176
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 50 FLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQR 109
FLE N TSLP + AG A I+ + S + G Y K N QV L++
Sbjct: 63 FLEGIN-----TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLE 115
Query: 110 PREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVN 169
+ IR + + YN T + + I A+ T V + PAP++ Y E ++
Sbjct: 116 AISNQGTIRFVCNSWVYN--TKLYKSVRIFFAN-HTYVPSET-PAPLVSYREEELKSLRG 171
Query: 170 PGFGQ 174
G G+
Sbjct: 172 NGTGE 176
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant
Length = 839
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 50 FLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQR 109
FLE N TSLP + AG A I+ + S + G Y K N QV L++
Sbjct: 63 FLEGIN-----TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLE 115
Query: 110 PREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVN 169
+ IR + + YN T + + I A+ T V + PAP++ Y E ++
Sbjct: 116 AISNQGTIRFVCNSWVYN--TKLYKSVRIFFAN-HTYVPSET-PAPLVSYREEELKSLRG 171
Query: 170 PGFGQ 174
G G+
Sbjct: 172 NGTGE 176
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 50 FLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQR 109
FLE N TSLP + AG A I+ + S + G Y K N QV L++
Sbjct: 63 FLEGIN-----TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLE 115
Query: 110 PREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVN 169
+ IR + + YN T + + I A+ T V + PAP++ Y E ++
Sbjct: 116 AISNQGTIRFVCNSWVYN--TKLYKSVRIFFAN-HTYVPSET-PAPLVSYREEELKSLRG 171
Query: 170 PGFGQ 174
G G+
Sbjct: 172 NGTGE 176
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|1YGE|A Chain A, Lipoxygenase-1 (Soybean) At 100k
pdb|2SBL|A Chain A, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
Length = 839
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 50 FLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQR 109
FLE N TSLP + AG A I+ + S + G Y K N QV L++
Sbjct: 63 FLEGIN-----TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLE 115
Query: 110 PREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVN 169
+ IR + + YN T + + I A+ T V + PAP++ Y E ++
Sbjct: 116 AISNQGTIRFVCNSWVYN--TKLYKSVRIFFAN-HTYVPSET-PAPLVSYREEELKSLRG 171
Query: 170 PGFGQ 174
G G+
Sbjct: 172 NGTGE 176
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 50 FLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQR 109
FLE N TSLP + AG A I+ + S + G Y K N QV L++
Sbjct: 63 FLEGIN-----TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLE 115
Query: 110 PREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVN 169
+ IR + + YN T + + I A+ T V + PAP++ Y E ++
Sbjct: 116 AISNQGTIRFVCNSWVYN--TKLYKSVRIFFAN-HTYVPSET-PAPLVSYREEELKSLRG 171
Query: 170 PGFGQ 174
G G+
Sbjct: 172 NGTGE 176
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 50 FLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQR 109
FLE N TSLP + AG A I+ + S + G Y K N QV L++
Sbjct: 63 FLEGIN-----TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLE 115
Query: 110 PREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVN 169
+ IR + + YN T + + I A+ T V + PAP++ Y E ++
Sbjct: 116 AISNQGTIRFVCNSWVYN--TKLYKSVRIFFAN-HTYVPSET-PAPLVSYREEELKSLRG 171
Query: 170 PGFGQ 174
G G+
Sbjct: 172 NGTGE 176
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 50 FLEKSNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQR 109
FLE N TSLP + AG A I+ + S + G Y K N QV L++
Sbjct: 63 FLEGIN-----TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLE 115
Query: 110 PREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVN 169
+ IR + + YN T + + I A+ T V + PAP++ Y E ++
Sbjct: 116 AISNQGTIRFVCNSWVYN--TKLYKSVRIFFAN-HTYVPSET-PAPLVSYREEELKSLRG 171
Query: 170 PGFGQ 174
G G+
Sbjct: 172 NGTGE 176
>pdb|3R0X|A Chain A, Crystal Structure Of Selenomethionine Incorporated Apo
D-Serine Deaminase From Salmonella Tyhimurium
Length = 448
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 12 LTHVEYNRSYKITGISSQPMSQ----LMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVL 67
+T VEY Y + + +Q FIDD +R + Y + + QF V+
Sbjct: 205 VTVVEYEDDYGVAVEQGRKAAQSDPNCFFIDDENSRTLFLGYAVAGQRLKAQFAQQGRVV 264
Query: 68 AGSEARPIYLP 78
S +YLP
Sbjct: 265 DASHPLFVYLP 275
>pdb|2QCQ|A Chain A, Crystal Structure Of Bone Morphogenetic Protein-3 (Bmp-3)
pdb|2QCQ|B Chain B, Crystal Structure Of Bone Morphogenetic Protein-3 (Bmp-3)
Length = 110
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 265 PDDKGSYGRIKRVCETELGIVSQCCQPKQASKLSMQYFE---NVALKI 309
P + + I R GI CC P++ S LS+ +F+ NV LK+
Sbjct: 51 PSNHATIQSIVRAVGVVPGIPEPCCVPEKMSSLSILFFDENKNVVLKV 98
>pdb|3R0Z|A Chain A, Crystal Structure Of Apo D-Serine Deaminase From
Salmonella Typhimurium
Length = 448
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 12 LTHVEYNRSYKITGISSQPMSQ----LMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVL 67
+T VEY Y + + +Q FIDD +R + Y + + QF V+
Sbjct: 205 VTVVEYEDDYGVAVEQGRKAAQSDPNCFFIDDENSRTLFLGYAVAGQRLKAQFAQQGRVV 264
Query: 68 AGSEARPIYLP 78
S +YLP
Sbjct: 265 DASHPLFVYLP 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,649,433
Number of Sequences: 62578
Number of extensions: 452856
Number of successful extensions: 1029
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 982
Number of HSP's gapped (non-prelim): 39
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)