Query 037086
Match_columns 426
No_of_seqs 119 out of 998
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 08:31:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 8.3E-78 1.8E-82 649.1 39.0 407 1-426 291-716 (900)
2 KOG1041 Translation initiation 100.0 6.3E-75 1.4E-79 621.6 37.1 403 1-426 276-684 (876)
3 KOG1042 Germ-line stem cell di 100.0 5.3E-65 1.2E-69 500.4 27.4 379 2-426 281-680 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 2.7E-53 5.8E-58 428.1 26.8 269 130-426 1-276 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 4.5E-52 9.7E-57 423.0 27.6 295 98-426 2-304 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 4.9E-43 1.1E-47 350.5 24.4 240 143-426 1-249 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 6.7E-30 1.5E-34 247.9 11.9 149 259-426 1-154 (302)
8 PF02170 PAZ: PAZ domain; Int 99.9 1.3E-24 2.8E-29 185.5 9.1 108 1-108 25-134 (135)
9 cd04659 Piwi_piwi-like_ProArk 99.9 2.8E-21 6E-26 194.7 14.3 158 237-426 94-266 (404)
10 cd02825 PAZ PAZ domain, named 99.8 5.5E-20 1.2E-24 152.1 7.9 83 2-85 30-115 (115)
11 cd02845 PAZ_piwi_like PAZ doma 99.8 3.3E-20 7.2E-25 152.9 6.5 84 1-86 24-115 (117)
12 cd02846 PAZ_argonaute_like PAZ 99.8 1.2E-19 2.5E-24 150.3 9.1 85 1-85 28-114 (114)
13 cd02844 PAZ_CAF_like PAZ domai 99.6 7E-16 1.5E-20 129.9 6.2 82 2-86 28-133 (135)
14 cd02843 PAZ_dicer_like PAZ dom 99.0 2.8E-10 6E-15 92.6 5.5 66 3-70 39-106 (122)
15 COG1431 Argonaute homolog, imp 96.2 0.018 4E-07 58.6 8.1 200 150-374 305-511 (685)
16 PF09373 PMBR: Pseudomurein-bi 76.0 3.3 7.1E-05 25.7 2.6 20 406-425 14-33 (33)
17 cd06559 Endonuclease_V Endonuc 67.5 26 0.00057 31.9 7.7 42 334-379 24-65 (208)
18 PF08459 UvrC_HhH_N: UvrC Heli 56.7 27 0.00059 30.2 5.4 75 334-425 10-85 (155)
19 PF00763 THF_DHG_CYH: Tetrahyd 53.2 50 0.0011 27.0 6.3 69 242-312 15-85 (117)
20 PRK14166 bifunctional 5,10-met 40.3 1.3E+02 0.0028 28.9 7.7 56 254-311 28-85 (282)
21 PRK14193 bifunctional 5,10-met 38.7 1.4E+02 0.003 28.6 7.7 57 254-312 30-88 (284)
22 PRK14194 bifunctional 5,10-met 38.5 1.5E+02 0.0032 28.8 7.8 37 255-291 32-70 (301)
23 PRK14187 bifunctional 5,10-met 38.5 1.6E+02 0.0034 28.5 8.0 56 255-312 31-88 (294)
24 PRK14169 bifunctional 5,10-met 38.0 1.6E+02 0.0034 28.3 7.8 56 254-311 28-85 (282)
25 PRK14171 bifunctional 5,10-met 37.9 1.7E+02 0.0037 28.1 8.1 56 254-311 30-87 (288)
26 PRK14183 bifunctional 5,10-met 36.9 1.6E+02 0.0034 28.2 7.7 56 255-312 30-87 (281)
27 PRK14176 bifunctional 5,10-met 36.5 2E+02 0.0043 27.7 8.3 56 255-312 37-94 (287)
28 PRK14185 bifunctional 5,10-met 36.4 1.4E+02 0.003 28.8 7.2 55 255-311 30-86 (293)
29 PRK14190 bifunctional 5,10-met 35.3 1.7E+02 0.0037 28.1 7.7 57 254-312 30-88 (284)
30 PRK14170 bifunctional 5,10-met 35.2 1.7E+02 0.0037 28.1 7.6 39 254-292 29-69 (284)
31 PRK14180 bifunctional 5,10-met 35.1 1.7E+02 0.0037 28.0 7.6 56 255-312 30-87 (282)
32 PRK14182 bifunctional 5,10-met 34.4 1.8E+02 0.0038 27.9 7.6 56 254-311 28-85 (282)
33 PRK14192 bifunctional 5,10-met 34.1 2.5E+02 0.0053 26.9 8.6 66 255-322 32-101 (283)
34 PRK14175 bifunctional 5,10-met 32.3 1.9E+02 0.0041 27.8 7.4 55 255-311 31-87 (286)
35 PRK14167 bifunctional 5,10-met 31.6 2.1E+02 0.0046 27.7 7.7 37 255-291 30-68 (297)
36 PRK14174 bifunctional 5,10-met 31.3 2.2E+02 0.0047 27.5 7.7 56 255-312 30-87 (295)
37 PRK14184 bifunctional 5,10-met 30.9 2.3E+02 0.0051 27.2 7.8 63 255-319 30-96 (286)
38 PRK14188 bifunctional 5,10-met 30.3 2.5E+02 0.0054 27.1 7.9 37 255-291 31-69 (296)
39 PLN02516 methylenetetrahydrofo 29.6 2.7E+02 0.0058 27.0 8.0 37 255-291 38-76 (299)
40 PRK14189 bifunctional 5,10-met 29.3 2.8E+02 0.0061 26.6 8.0 37 255-291 31-69 (285)
41 PLN02897 tetrahydrofolate dehy 29.2 2.4E+02 0.0051 27.9 7.6 36 256-291 86-123 (345)
42 PRK14172 bifunctional 5,10-met 28.3 2.6E+02 0.0057 26.7 7.6 55 256-312 32-88 (278)
43 PRK10792 bifunctional 5,10-met 27.8 2.5E+02 0.0055 26.9 7.5 55 256-312 33-89 (285)
44 PRK14186 bifunctional 5,10-met 27.5 2.7E+02 0.006 26.9 7.7 54 256-311 32-87 (297)
45 PRK14179 bifunctional 5,10-met 27.2 3E+02 0.0064 26.5 7.8 55 255-311 31-87 (284)
46 KOG0183 20S proteasome, regula 27.2 42 0.0009 30.5 1.9 100 3-106 110-233 (249)
47 PRK14168 bifunctional 5,10-met 26.7 2.8E+02 0.006 26.9 7.5 37 255-291 32-70 (297)
48 PF10087 DUF2325: Uncharacteri 25.7 1.2E+02 0.0026 23.6 4.2 74 208-293 11-85 (97)
49 PRK14177 bifunctional 5,10-met 25.6 3.3E+02 0.0072 26.1 7.8 62 256-319 33-98 (284)
50 PF02427 PSI_PsaE: Photosystem 25.4 90 0.002 22.2 2.9 22 357-379 20-41 (61)
51 PF07555 NAGidase: beta-N-acet 24.6 5.2E+02 0.011 25.1 9.1 103 210-314 18-146 (306)
52 PRK14191 bifunctional 5,10-met 24.3 3.5E+02 0.0076 26.0 7.7 37 255-291 30-68 (285)
53 PLN02616 tetrahydrofolate dehy 23.9 3.7E+02 0.0079 26.8 7.9 35 256-290 103-139 (364)
54 cd06535 CIDE_N_CAD CIDE_N doma 23.5 1.3E+02 0.0028 22.7 3.6 15 37-52 45-59 (77)
55 PF03129 HGTP_anticodon: Antic 23.2 2E+02 0.0043 21.8 5.0 53 202-267 11-63 (94)
56 PHA02969 hypothetical protein; 22.3 89 0.0019 24.4 2.6 53 260-313 6-64 (111)
57 PRK14178 bifunctional 5,10-met 22.2 3.9E+02 0.0085 25.5 7.6 36 256-291 26-63 (279)
58 PRK11617 endonuclease V; Provi 22.1 4.5E+02 0.0098 24.3 7.7 42 334-379 28-69 (224)
59 PRK14173 bifunctional 5,10-met 20.4 3.7E+02 0.0079 25.9 7.0 21 271-291 46-66 (287)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=8.3e-78 Score=649.07 Aligned_cols=407 Identities=36% Similarity=0.637 Sum_probs=348.2
Q ss_pred ChhhccCCEEEEeecCCceeEEEecccCCCCCCeEEecC--C-------CceeeHHHHHHHhcCccccCC-CCceEecCC
Q 037086 1 VEEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDD--N-------GTRMSVIQYFLEKSNIALQFT-SLPAVLAGS 70 (426)
Q Consensus 1 ~~~~l~gl~v~~~~~~~~~~~~I~~i~~~~a~~~~F~~~--~-------g~~itv~~Yf~~~y~i~l~~p-~~Plv~~~~ 70 (426)
++++|+|++|.++|. +++|+|.||++.++++.+|... + |+++||+|||+++||++|+|| ++|||.+|+
T Consensus 291 ~~~~lkGl~V~t~~~--~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~ 368 (900)
T PLN03202 291 AKRMLKNLRVKVSPS--NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGK 368 (900)
T ss_pred HHHHhcCCEEEEecC--CceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCccccCCCCCCEEEcCC
Confidence 368899999999995 5899999999999999999321 1 358999999999999999996 999999998
Q ss_pred CCCcccccccceEecCCCccCCCCCHHHHHHHHHHhcCChhHHHHHHHHHHHHcCCCCCcccccccCeeecCceeEeeee
Q 037086 71 EARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDAR 150 (426)
Q Consensus 71 ~~k~~~~P~El~~i~~~Q~~~~~l~~~~~~~~i~~~~~~P~~r~~~i~~~~~~l~~~~~~~l~~~~Gi~i~~~~~~v~~r 150 (426)
..+.+|||||||.|+|+|++..+|++.++++|+++|+..|.+|.+.|.++++.++++.++.|+ +|||+|+++|++|+||
T Consensus 369 ~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~-~fGi~i~~~~~~V~gR 447 (900)
T PLN03202 369 PKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKSSNYDADPMLR-SCGISISSQFTQVEGR 447 (900)
T ss_pred CCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhCCCCchHHH-HCCcEecCCceEEeEE
Confidence 888899999999999999999999999999999999999999999999999998888789999 9999999999999999
Q ss_pred ecCCCeeeeccCCcceeecCCCccccccccccccCcccceeEEEEeCCCCCCChHHHHHHHHHHHHHhcCCcCCCCCCcc
Q 037086 151 ILPAPMLKYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIP 230 (426)
Q Consensus 151 vL~~P~i~~~~~~~~~~~~p~~g~W~~~~~~f~~~~~~~~w~vi~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~ 230 (426)
+|+||+|.|+++. .+.|.+|+|++++.+|+.|+++.+|++++|+++ ..++.|++.|.+.|+.+||.+..|....
T Consensus 448 vL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~---~~~~~f~~~l~~~~~~~G~~i~~p~~~~ 521 (900)
T PLN03202 448 VLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR---CDIRHLVRDLIKCGEMKGINIEPPFDVF 521 (900)
T ss_pred EcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc---hhHHHHHHHHHHHHHHCCceeCCCcccc
Confidence 9999999999753 245789999999999999999999999988643 3689999999999999999998754321
Q ss_pred ccC------CCchHHHHHHHHHHHHHhhCCCCceEEEEEeCCC-CCc-hhhHhhhhccccceeeeeecccccccCCHhHH
Q 037086 231 ISS------SNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDD-KGS-YGRIKRVCETELGIVSQCCQPKQASKLSMQYF 302 (426)
Q Consensus 231 ~~~------~~~~~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~-~~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~ 302 (426)
... ...+.++..++.+.+.+. ..++|+|||+|++ +.+ |+.||++||.+.||+||||... +.++|++
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~---~~~~q~~ 595 (900)
T PLN03202 522 EENPQFRRAPPPVRVEKMFEQIQSKLP---GPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPT---RVNDQYL 595 (900)
T ss_pred ccccccccccchHHHHHHHHHHHHhcc---CCCeEEEEEEcCCCCcchHHHHHHHHhhccCcccEEeCcc---ccchHHH
Confidence 110 112345666666555432 4699999999975 566 9999999999999999999554 3478999
Q ss_pred HHHHHhhhcccCceeeeeccccccCCCccCCCCeEEeeecccCCCCCCCCCCeEEEEEEeeCCCCccceeeEEeecCCch
Q 037086 303 ENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQARHE 382 (426)
Q Consensus 303 ~ni~lKiN~KlGG~n~~l~~~~~~~~p~l~~~~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~~~~y~~~~~~Q~~~~ 382 (426)
+|||||||+||||+||.+..+....+|++.+.+|||||+||+||+++....|||||+|||+||+.+++|++.+++|.+++
T Consensus 596 ~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~ 675 (900)
T PLN03202 596 TNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKV 675 (900)
T ss_pred HHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCc
Confidence 99999999999999999875433457887778999999999999987644799999999999767999999999999999
Q ss_pred hhhhhhhhccCCCCCCcchhhHHHHHHHHHHHHc-CCCCCceEeC
Q 037086 383 EIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRST-NRKPESIIFY 426 (426)
Q Consensus 383 e~i~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~n-~~~P~~IiiY 426 (426)
|+|++++...-+ ..+++|+.++|..|++.| +.+|++||||
T Consensus 676 E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~~~~~P~~Iiiy 716 (900)
T PLN03202 676 EMIDSLFKPVGD----KDDDGIIRELLLDFYTSSGKRKPEQIIIF 716 (900)
T ss_pred eeeeehhccccc----cchHHHHHHHHHHHHHHcCCCCCceeEEE
Confidence 999987421111 124889999999998875 6999999998
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-75 Score=621.58 Aligned_cols=403 Identities=38% Similarity=0.640 Sum_probs=359.3
Q ss_pred ChhhccCCEEEEeecCCceeEEEecccCCCCCCeEEecCC--CceeeHHHHHHHhcCccccCCCCceEecCCCCCccccc
Q 037086 1 VEEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDN--GTRMSVIQYFLEKSNIALQFTSLPAVLAGSEARPIYLP 78 (426)
Q Consensus 1 ~~~~l~gl~v~~~~~~~~~~~~I~~i~~~~a~~~~F~~~~--g~~itv~~Yf~~~y~i~l~~p~~Plv~~~~~~k~~~~P 78 (426)
++++|+||+|.++|++..|.|+|.++++.+|.+.+|...+ +.++||+|||+++|+++|+||++|||.+|..++..|||
T Consensus 276 ~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~~~~~~~P 355 (876)
T KOG1041|consen 276 IKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNTTFELKDKKGREITVADYFLEKYNITLKYPDLPCVVVKRPKRENFYP 355 (876)
T ss_pred HHHHhhCcEEEEecccCcceEEEecccCCcccCceeeccCCCceEEeHHHHHHHhcCccccCCCCccEeecCCCCCcccc
Confidence 4689999999999977788999999999999999994333 68999999999999999999999999999988899999
Q ss_pred ccceEecCCCccCC-CCCHHHHHHHHHHhcCChhHHHHHHHHHHHHcCCCCCcccccccCeeecCceeEeeeeecCCCee
Q 037086 79 MELSRIVAGQRYTK-RFNERQVTALLRATCQRPREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPML 157 (426)
Q Consensus 79 ~El~~i~~~Q~~~~-~l~~~~~~~~i~~~~~~P~~r~~~i~~~~~~l~~~~~~~l~~~~Gi~i~~~~~~v~~rvL~~P~i 157 (426)
||+|.|++|||+.. +|++.++++|++.++..|++|++.|.+++....++.+++|+ +||+.|.++|+.|+||+||||.|
T Consensus 356 mElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~~~~~~~~d~~l~-~fGi~i~~~~~~v~grvL~~P~L 434 (876)
T KOG1041|consen 356 MELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVLKSSLKLSNPYLK-EFGIIVVSEPTQVEGRVLPPPKL 434 (876)
T ss_pred hhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHHHHhccccchhHH-hcCeEEecccccccccccCCcee
Confidence 99999999999998 99999999999999999999999999999988887799999 99999999999999999999999
Q ss_pred eeccCCcceeecCCCccccccccccccCcccceeEEEEeCCCCCCChHHHHHHHHHHHHHhcCCcCCCCCCccccCCCch
Q 037086 158 KYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPN 237 (426)
Q Consensus 158 ~~~~~~~~~~~~p~~g~W~~~~~~f~~~~~~~~w~vi~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~ 237 (426)
.|+++ .....|.+|.|++++++|+.|+.+..|+|++|+...+... +.|+++|++.|++.||++.. +. .......
T Consensus 435 ~~~~~--~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~-~~f~~~L~~~c~~~Gm~i~~-~~--~~~~~~~ 508 (876)
T KOG1041|consen 435 KFGGN--EMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQ-KQFVDELIKICKDKGMEIKR-PR--KWAPTEE 508 (876)
T ss_pred eccCC--CCccCCCcCccccccCcccccceEEEEEEEEecccccccH-HHHHHHHHHHHHHcCccccc-cc--ccCcccc
Confidence 99986 2235677999999999999999999999999987666566 99999999999999999976 54 1111224
Q ss_pred HHHHHHHHHHHHHhhCCCCceEEEEEeCCCCCc-hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcccCce
Q 037086 238 QIEKALVDVHNRTTQQGKQLQLLIIILPDDKGS-YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVGGR 316 (426)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~~~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~KlGG~ 316 (426)
+++..++......+. ..+++++++|+++++.+ |..+|++++...|++||||..+++.+..+||++||+||||+||||+
T Consensus 509 ~~~~~~~~~~~~~~~-~~~~~li~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~ 587 (876)
T KOG1041|consen 509 SLEDMITEKSSMEKA-AAGVQLVFIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLILKINVKLGGL 587 (876)
T ss_pred hhHHHHHHHHhhhcc-CCCceEEEEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHHHHhhccCce
Confidence 555555544443222 36799999999999989 9999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccCCCccCCCCeEEeeecccCCCCCCCC--CCeEEEEEEeeCCCCccceeeEEeecCCchhhhhhhhhccCC
Q 037086 317 NTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDS--SPSIAAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQD 394 (426)
Q Consensus 317 n~~l~~~~~~~~p~l~~~~tmiiG~DVsh~~~~~~~--~pSi~avv~S~d~~~~~~y~~~~~~Q~~~~e~i~~~~~~~~~ 394 (426)
|+.+..+.....| ...++|||||+|||||+++... .|||||||||+|| +.++|.+.+++|++++|.|+++
T Consensus 588 N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~PSiagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~------ 659 (876)
T KOG1041|consen 588 NYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNPSIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDL------ 659 (876)
T ss_pred eeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCccEEEEEecccc-cchhhcceEEEecCChhhhcch------
Confidence 9998876332233 2358999999999999998654 5999999999996 9999999999999999999986
Q ss_pred CCCCcchhhHHHHHHHHHHHHcCCCCCceEeC
Q 037086 395 PQRGLVHGGMIRELLIAFNRSTNRKPESIIFY 426 (426)
Q Consensus 395 ~~~~~~~~~~~~~~l~~f~~~n~~~P~~IiiY 426 (426)
.+++.++|..|+++++.+|+|||||
T Consensus 660 -------~~~~~~~l~~f~~~t~~~P~~IIiy 684 (876)
T KOG1041|consen 660 -------GEMIRELLRSFRKSTRKLPDRIVIY 684 (876)
T ss_pred -------HHHHHHHHHHHHHhccCCCceEEEE
Confidence 9999999999999999999999998
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.3e-65 Score=500.40 Aligned_cols=379 Identities=23% Similarity=0.389 Sum_probs=339.3
Q ss_pred hhhccCCEEEEeecCCceeEEEecccCCCCCCeEEecCCCceeeHHHHHHHhcCccccCCCCceEecCCCC--------C
Q 037086 2 EEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEA--------R 73 (426)
Q Consensus 2 ~~~l~gl~v~~~~~~~~~~~~I~~i~~~~a~~~~F~~~~g~~itv~~Yf~~~y~i~l~~p~~Plv~~~~~~--------k 73 (426)
++.+.||.|.|+| |+|+|+|+|++|..+|.++|...+| +||+.|||+++|||+|.+-+||+|....+. .
T Consensus 281 ~~~~~glivLT~Y--NNktyriddvD~~~tP~stF~k~dg-eIs~veYyk~qYni~I~dl~QPlliS~~k~K~~~g~~~q 357 (845)
T KOG1042|consen 281 NKNVIGLIVLTRY--NNKTYRIDDVDFSQTPLSTFKKDDG-EISFVEYYKKQYNIEITDLNQPLLISEPKDKRPKGEPPQ 357 (845)
T ss_pred HHHhcceEEEEec--CCceeeeeccccCcCccceeeecCc-eeeHhHHHHHhcCeEEeeCCcceEeccCcccCCCCCCcc
Confidence 6789999999999 8999999999999999999955555 999999999999999999999999986432 3
Q ss_pred cccccccceEecCCCccCCCCCHHHH------HHHHHHhcCChhHHHHHHHHHHHHcCCCC--CcccccccCeeecCcee
Q 037086 74 PIYLPMELSRIVAGQRYTKRFNERQV------TALLRATCQRPREREENIRMMTRANAYND--DTLVNREFGIQVADVLT 145 (426)
Q Consensus 74 ~~~~P~El~~i~~~Q~~~~~l~~~~~------~~~i~~~~~~P~~r~~~i~~~~~~l~~~~--~~~l~~~~Gi~i~~~~~ 145 (426)
..++.||||+++ +|+++++ ++|...+.+.|.+|.+++.++...+.-+. -+.|+ .||++++++.+
T Consensus 358 ~~~lIPELc~~T-------GLtd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr-~Wgi~ld~~l~ 429 (845)
T KOG1042|consen 358 LAMLIPELCFLT-------GLTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELR-DWGISLDSNLA 429 (845)
T ss_pred ceeeehhhhhcc-------CCcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHH-hcCcccCcchh
Confidence 479999999999 6888886 46889999999999999999999887654 35788 99999999999
Q ss_pred EeeeeecCCCeeeeccCCcceeecCCCcccc--ccccccccCcccceeEEEEeCCCCCCChHHHHHHHHHHHHHhcCCcC
Q 037086 146 LVDARILPAPMLKYHESGREASVNPGFGQWN--MINKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVF 223 (426)
Q Consensus 146 ~v~~rvL~~P~i~~~~~~~~~~~~p~~g~W~--~~~~~f~~~~~~~~w~vi~~~~~~~~~~~~~f~~~l~~~~~~~G~~~ 223 (426)
+++||+|++-+|.+++. + ..+.+..++|. ++.-+++....+.+|+++... ++...+++|++.|.+.+..+||++
T Consensus 430 ~v~gRil~sEkI~~~~~-~-~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~--r~~~~a~~fi~~l~r~a~~mgm~i 505 (845)
T KOG1042|consen 430 EVQGRILPSEKILFGNQ-K-VPYEGKQADWSREFRTCGILRGSNLDNWAVIYPG--RNNSEAQEFINMLRRVASSMGMQI 505 (845)
T ss_pred hccceecCccceecCCc-c-cCCCcchhhhhhhcccccccccCCCcceEEEecC--ccHHHHHHHHHHHHHhccccceec
Confidence 99999999999999984 1 22344568997 677788888899999998643 456789999999999999999999
Q ss_pred CCCCCccccCCCchHHHHHHHHHHHHHhhCCCCceEEEEEeCCCCCc-hhhHhhhhccccceeeeeecccccccCC--Hh
Q 037086 224 NPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDDKGS-YGRIKRVCETELGIVSQCCQPKQASKLS--MQ 300 (426)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~~~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~--~~ 300 (426)
..|.++.+.+++++.|.+++++... ..+++|+|++|+.+++ |+.||++++.+..||||||+.+|+.+.. .+
T Consensus 506 ~~P~~v~i~ddr~~tYvraiqq~v~------~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmS 579 (845)
T KOG1042|consen 506 REPICVEIKDDRPGTYVRAIQQVVG------ADIQMVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMS 579 (845)
T ss_pred CCceEEEeCCCChHHHHHHHHHhcc------CCceEEEEEecCCchhhHHHHHhheeccCCCccceEEEEeecCcchhHH
Confidence 9887788888888999988887665 5899999999999988 9999999999999999999999998754 68
Q ss_pred HHHHHHHhhhcccCceeeeeccccccCCCccCCCCeEEeeecccCCCCCCCCCCeEEEEEEeeCCCCccceeeEEeecCC
Q 037086 301 YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAR 380 (426)
Q Consensus 301 ~~~ni~lKiN~KlGG~n~~l~~~~~~~~p~l~~~~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~~~~y~~~~~~Q~~ 380 (426)
++++|++|||+||||..|.++ ||+ +.+|+||+||+|.+. .+..|++|+|||+| ..+++|+|.+..|..
T Consensus 580 IAtKI~lQmnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~--~k~rsvga~VAs~n-~~~tr~fS~v~~~~~ 647 (845)
T KOG1042|consen 580 IATKIALQMNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPT--LKGRSVGAFVASMN-NDFTRWFSRVIEQEN 647 (845)
T ss_pred HHHHHHHHHhhhhcCcceEEe------eec---ccceEEEEEeecCcc--ccCceEEEEEEeec-cchhhhhhheecccC
Confidence 999999999999999999997 555 689999999999886 36899999999999 999999999999999
Q ss_pred chhhhhhhhhccCCCCCCcchhhHHHHHHHHHHHHcCCCCCceEeC
Q 037086 381 HEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRSTNRKPESIIFY 426 (426)
Q Consensus 381 ~~e~i~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~n~~~P~~IiiY 426 (426)
++|..+.+ +-++..+|++|++.|..+|+|||+|
T Consensus 648 ~qel~d~L-------------~~~~~~ALr~y~~~n~~LPsRIi~Y 680 (845)
T KOG1042|consen 648 GQELADNL-------------KVFLAKALRQYYEVNRTLPSRIIVY 680 (845)
T ss_pred HHHHHHHH-------------HHHHHHHHHHHHHhcccCCceEEEE
Confidence 99999999 9999999999999999999999998
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=2.7e-53 Score=428.11 Aligned_cols=269 Identities=42% Similarity=0.718 Sum_probs=230.3
Q ss_pred cccccccCeeecCceeEeeeeecCCCeeeeccCCcceeecCCCccccccccccccCcccceeEEEEeCCCCCC----ChH
Q 037086 130 TLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTDLDP----DVP 205 (426)
Q Consensus 130 ~~l~~~~Gi~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~p~~g~W~~~~~~f~~~~~~~~w~vi~~~~~~~~----~~~ 205 (426)
+.|+ +||++|+++|++|+||+|+||.|.|+++.+ ...+.+|+|++++.+|++++.+.+|+++++.++.+. ..+
T Consensus 1 ~~l~-~fGi~i~~~~~~v~grvL~~P~i~y~~~~~--~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~ 77 (426)
T cd04657 1 PYLK-EFGISVSKEMITVPGRVLPPPKLKYGDSSK--TVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADL 77 (426)
T ss_pred ChhH-hCCCEecCCeeEEeEEEcCCceeeccCCcc--ccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHH
Confidence 3577 999999999999999999999999996432 345779999999999999999999999988754322 379
Q ss_pred HHHHHHHHHHHHhcCCcCCCCCCccccCCCchHHHHHHHHHHHHHhhCCCCceEEEEEeCCCCCc-hhhHhhhhccccce
Q 037086 206 FQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDDKGS-YGRIKRVCETELGI 284 (426)
Q Consensus 206 ~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~~~~-Y~~iK~~~~~~~gV 284 (426)
+.|++.|.+.++.+||++. .... ...+..+..++.+.+.. ...++||+||+|+++.+ |+.||+++|.+.||
T Consensus 78 ~~F~~~l~~~~~~~g~~~~--~~~~---~~~~~~~~~~~~~~~~~---~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~~gI 149 (426)
T cd04657 78 RNFVDQLVKTVIGAGINIT--TAIA---SVEGRVEELFAKLKQAK---GEGPQLVLVILPKKDSDIYGRIKRLADTELGI 149 (426)
T ss_pred HHHHHHHHHHHHhcCCccc--cccc---ccchhHHHHHHHHHhhc---cCCCCEEEEEEcCCCcchHHHHHHHHhhcCCc
Confidence 9999999999999999987 2121 12334444444444332 23699999999998867 99999999999999
Q ss_pred eeeeeccccccc-CCHhHHHHHHHhhhcccCceeeeeccccccCCCccCCCCeEEeeecccCCCCCC-CCCCeEEEEEEe
Q 037086 285 VSQCCQPKQASK-LSMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGE-DSSPSIAAVVAS 362 (426)
Q Consensus 285 ~TQ~v~~~t~~k-~~~~~~~ni~lKiN~KlGG~n~~l~~~~~~~~p~l~~~~tmiiG~DVsh~~~~~-~~~pSi~avv~S 362 (426)
+||||..+++.+ .+++++.||+||||+||||+||.++.+ ..+++...+|||||+||+||++++ ...|||||+|||
T Consensus 150 ~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~---~~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Vas 226 (426)
T cd04657 150 HTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPD---IRPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVAS 226 (426)
T ss_pred ccEEEcccccccccchHHHHHHHHHHHHhcCCEeeecccc---cccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEEe
Confidence 999999999986 789999999999999999999999876 223445589999999999999875 468999999999
Q ss_pred eCCCCccceeeEEeecCCchhhhhhhhhccCCCCCCcchhhHHHHHHHHHHHHcCCCCCceEeC
Q 037086 363 MDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRSTNRKPESIIFY 426 (426)
Q Consensus 363 ~d~~~~~~y~~~~~~Q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~n~~~P~~IiiY 426 (426)
+| .++++|.+.+++|++++|+++++ +++|+++|+.|++.||.+|++||||
T Consensus 227 ~d-~~~~~y~~~~~~q~~~~e~i~~l-------------~~~~~~~l~~~~~~~~~~P~~Iiiy 276 (426)
T cd04657 227 VD-WHLAQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERIIYY 276 (426)
T ss_pred cC-CcccccceEEEEeCCCcchHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEE
Confidence 99 99999999999999999999998 9999999999999999999999998
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=4.5e-52 Score=422.97 Aligned_cols=295 Identities=26% Similarity=0.394 Sum_probs=256.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHcCCCCC--cccccccCeeecCceeEeeeeecCCCeeeeccCCcceeecCCCccc
Q 037086 98 QVTALLRATCQRPREREENIRMMTRANAYNDD--TLVNREFGIQVADVLTLVDARILPAPMLKYHESGREASVNPGFGQW 175 (426)
Q Consensus 98 ~~~~~i~~~~~~P~~r~~~i~~~~~~l~~~~~--~~l~~~~Gi~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~p~~g~W 175 (426)
.++++++.++.+|.||++.|.++++.+..+.+ +.|+ +||++|+++|++|+||+|+||.|.|+++. ...+.+|+|
T Consensus 2 ~m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~-~~gi~i~~~~~~v~~rvL~~P~i~~~~~~---~~~~~~~~w 77 (448)
T cd04658 2 LMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLK-KWGIELDSNPLKIQGRVLPPEQIIMGNVF---VYANSNADW 77 (448)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHH-HCCeEEcCCceEEeeEEeCCCeEEeCCCc---cCCCCCCCc
Confidence 46789999999999999999999999877655 5799 99999999999999999999999999752 223568888
Q ss_pred ccc--ccccccCcccceeEEEEeCCCCCCChHHHHHHHHHHHHHhcCCcCCCCCCccccCCCchHHHHHHHHHHHHHhhC
Q 037086 176 NMI--NKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQ 253 (426)
Q Consensus 176 ~~~--~~~f~~~~~~~~w~vi~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 253 (426)
+.. +..|+.+.++.+|+++++. .+.+.++.|++.|.+.++.+||.+..|.++.+...+.+++.+.|++...
T Consensus 78 ~~~~~~~~~~~~~~~~~W~vi~~~--~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~----- 150 (448)
T cd04658 78 KREIRNQPLYDAVNLNNWVLIYPS--RDQREAESFLQTLKQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFR----- 150 (448)
T ss_pred chhhcCCcccCCcccCeEEEEEec--CCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhc-----
Confidence 754 5678999999999999875 4678899999999999999999998766655544445566666655443
Q ss_pred CCCceEEEEEeCCCCCc-hhhHhhhhccccceeeeeecccccccC--CHhHHHHHHHhhhcccCceeeeeccccccCCCc
Q 037086 254 GKQLQLLIIILPDDKGS-YGRIKRVCETELGIVSQCCQPKQASKL--SMQYFENVALKINVKVGGRNTVLVDAVQKRIPL 330 (426)
Q Consensus 254 ~~~~~lv~~vl~~~~~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~--~~~~~~ni~lKiN~KlGG~n~~l~~~~~~~~p~ 330 (426)
.+++|+|||+|++..+ |..||++++.+.||+||||..+++.+. ..+++.||++|||+||||+||.++.+ +
T Consensus 151 -~~~~lvvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~-----~- 223 (448)
T cd04658 151 -SDPQLVVIILPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP-----P- 223 (448)
T ss_pred -CCCcEEEEEECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC-----C-
Confidence 4799999999998877 999999999999999999999998864 56899999999999999999999764 1
Q ss_pred cCCCCeEEeeecccCCCCCCCCCCeEEEEEEeeCCCCccceeeEEeecCCchhh-hhhhhhccCCCCCCcchhhHHHHHH
Q 037086 331 VTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQARHEEI-IQDLYKSIQDPQRGLVHGGMIRELL 409 (426)
Q Consensus 331 l~~~~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~~~~y~~~~~~Q~~~~e~-i~~~~~~~~~~~~~~~~~~~~~~~l 409 (426)
+...+|||||+||+|++++ ..||+||+|||+| +++++|++.+..|..++|+ ++++ +++++++|
T Consensus 224 ~~~~~tmiiGidv~h~~~~--~~~Si~a~vas~~-~~~~~~~~~~~~q~~~~e~~~~~l-------------~~~~~~~l 287 (448)
T cd04658 224 FILKNTMIVGIDVYHDTIT--KKKSVVGFVASLN-KSITKWFSKYISQVRGQEEIIDSL-------------GKSMKKAL 287 (448)
T ss_pred CCCCCeEEEEEeeecCCCC--CCCcEEEEEEEcC-CCCceEeeEEEEeCCCceeeHHHH-------------HHHHHHHH
Confidence 2347999999999999874 5799999999999 9999999999999999898 8878 99999999
Q ss_pred HHHHHHcCCCCCceEeC
Q 037086 410 IAFNRSTNRKPESIIFY 426 (426)
Q Consensus 410 ~~f~~~n~~~P~~IiiY 426 (426)
..|++.||.+|++||||
T Consensus 288 ~~y~~~~~~~P~~Iiiy 304 (448)
T cd04658 288 KAYKKENKKLPSRIIIY 304 (448)
T ss_pred HHHHHHhCCCCceEEEE
Confidence 99999999999999998
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=4.9e-43 Score=350.49 Aligned_cols=240 Identities=27% Similarity=0.387 Sum_probs=201.9
Q ss_pred ceeEeeeeecCCCeeeeccCCcceeecCCCccccccccccccCccc-ceeEEEEeCCCCCCChHHHHHHHHHHHHHhcCC
Q 037086 143 VLTLVDARILPAPMLKYHESGREASVNPGFGQWNMINKKMFNGGRV-EVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGM 221 (426)
Q Consensus 143 ~~~~v~~rvL~~P~i~~~~~~~~~~~~p~~g~W~~~~~~f~~~~~~-~~w~vi~~~~~~~~~~~~~f~~~l~~~~~~~G~ 221 (426)
.|++|+||+||||.|.|+++ |++++++|..|+.+ .+|+++++.+ ...++|++.|.+.++++||
T Consensus 1 ~~~~v~grvL~~p~i~~~~~------------w~~~~~~f~~~~~~~~~W~vi~~~~----~~~~~f~~~l~~~~~~~G~ 64 (393)
T cd02826 1 TPLILKGRVLPKPQILFKNK------------FLRNIGPFEKPAKITNPVAVIAFRN----EEVDDLVKRLADACRQLGM 64 (393)
T ss_pred CceEEeeEecCCCceEecCC------------ccccCCeeCCCCEeCCeEEEEEccc----HHHHHHHHHHHHHHHhCCC
Confidence 37899999999999999851 99999999999998 9999998742 3467999999999999999
Q ss_pred cCCC-CCCccccCC--CchHHHHHHHHHHHHHhhCCCCceEEEEEeCCCCCc-hhhHhhhhccccceeeeeeccccccc-
Q 037086 222 VFNP-RPVIPISSS--NPNQIEKALVDVHNRTTQQGKQLQLLIIILPDDKGS-YGRIKRVCETELGIVSQCCQPKQASK- 296 (426)
Q Consensus 222 ~~~~-~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~~~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k- 296 (426)
.+.. ++...+... +.+++...|+++.+ .+++||+||+|+++.+ |+.||++++.. ||+||||..+++.+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lv~~ilp~~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~~ 137 (393)
T cd02826 65 KIKEIPIVSWIEDLNNSFKDLKSVFKNAIK------AGVQLVIFILKEKKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKM 137 (393)
T ss_pred ccCCCCCcceeecccccHHHHHHHHHHHhh------cCCCEEEEEEcCCCccHHHHHHHHHhcc-CCceEEEehhhhccc
Confidence 9987 443333221 23456666655443 4799999999998878 99999999887 99999999999876
Q ss_pred -CCHhHHHHHHHhhhcccCceeeeeccccccCCCccCCCCeEEeeecccCCCCC-CCCCCeEEEEEEeeCCCCccceeeE
Q 037086 297 -LSMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRG-EDSSPSIAAVVASMDWPEVTKYRGL 374 (426)
Q Consensus 297 -~~~~~~~ni~lKiN~KlGG~n~~l~~~~~~~~p~l~~~~tmiiG~DVsh~~~~-~~~~pSi~avv~S~d~~~~~~y~~~ 374 (426)
..+++++||++|||+||||+||.|+.+ + +...+|||||+||+|++++ ....||++|+|||+| .. +.+.+.
T Consensus 138 ~~~~~~~~Ni~lkin~KlGG~~~~l~~~-----~-~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~-~~-~~~g~~ 209 (393)
T cd02826 138 RRLKQTLDNLLRKVNSKLGGINYILDSP-----V-KLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLS-NH-TFLGGF 209 (393)
T ss_pred cccHHHHHHHHHHHhhhhCCeeeEeccC-----C-CCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecC-Cc-cccceE
Confidence 678999999999999999999999865 1 2247899999999999885 345899999999999 65 444456
Q ss_pred EeecCCchhhhhhhhhccCCCCCCcchhhHHHHHHHHHHHHcCC-CCCceEeC
Q 037086 375 VSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRSTNR-KPESIIFY 426 (426)
Q Consensus 375 ~~~Q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~n~~-~P~~IiiY 426 (426)
++.|..++|.++++ +++++++|..|+++|+. +|++||||
T Consensus 210 ~~~~~~~~~~~~~l-------------~~~~~~~L~~y~~~~~~~~P~~Iiiy 249 (393)
T cd02826 210 LYVQPSREVKLQDL-------------GEVIKKCLDGFKKSTGEGLPEKIVIY 249 (393)
T ss_pred EEEecCccchHHHH-------------HHHHHHHHHHHHHHcCCCCcceeEEE
Confidence 67888888988888 99999999999999999 99999998
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=99.96 E-value=6.7e-30 Score=247.93 Aligned_cols=149 Identities=42% Similarity=0.672 Sum_probs=133.1
Q ss_pred EEEEEeCCCCCc-hhhHhhhhccccceeeeeecccccccC--CHhHHHHHHHhhhcccCcee-eeeccccccCCCccCCC
Q 037086 259 LLIIILPDDKGS-YGRIKRVCETELGIVSQCCQPKQASKL--SMQYFENVALKINVKVGGRN-TVLVDAVQKRIPLVTDR 334 (426)
Q Consensus 259 lv~~vl~~~~~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~--~~~~~~ni~lKiN~KlGG~n-~~l~~~~~~~~p~l~~~ 334 (426)
+|+||+|+++.+ |..+|++++.++||+||||..+++.+. ..+++.||++|||+||||+| |.++.+ ...++ .
T Consensus 1 ~i~~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~--~~~~~---~ 75 (302)
T PF02171_consen 1 LIVVIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSP--PSIDL---K 75 (302)
T ss_dssp -EEEEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCS--SGSSE---S
T ss_pred CEEEEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccc--ccccc---C
Confidence 588999998777 999999999999999999999999987 46999999999999999995 556543 11222 6
Q ss_pred CeEEeeecccCCCCCCCCCCeEEEEEEeeCCCCccceeeEEeecCCchhhhhhhhhccCCCCCCcchhhHHHHHHHHHHH
Q 037086 335 PTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNR 414 (426)
Q Consensus 335 ~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~~~~y~~~~~~Q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~l~~f~~ 414 (426)
++||||+||+|++++....||++|+|+|+| ++.++|.+.+.+|..++|+++++ +++++++|+.|++
T Consensus 76 ~~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l-------------~~~~~~~L~~~~~ 141 (302)
T PF02171_consen 76 NTMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNL-------------EEIIKEALKEFKK 141 (302)
T ss_dssp EEEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHH-------------HHHHHHHHHHHHH
T ss_pred ceEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcch-------------hhHHHHHHHHHHH
Confidence 899999999999987656899999999999 99999999999999999999998 9999999999999
Q ss_pred HcCC-CCCceEeC
Q 037086 415 STNR-KPESIIFY 426 (426)
Q Consensus 415 ~n~~-~P~~IiiY 426 (426)
.|+. +|++||||
T Consensus 142 ~~~~~~P~~Iiiy 154 (302)
T PF02171_consen 142 NNGKWLPERIIIY 154 (302)
T ss_dssp TTTT-TTSEEEEE
T ss_pred HcCCCCCceEEEE
Confidence 9998 99999998
No 8
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.91 E-value=1.3e-24 Score=185.50 Aligned_cols=108 Identities=44% Similarity=0.719 Sum_probs=95.0
Q ss_pred ChhhccCCEEEEeecCCceeEEEecccCCCCCCeEEecCCCceeeHHHHHHHhcCccccCCCCceEecCCCCC--ccccc
Q 037086 1 VEEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEAR--PIYLP 78 (426)
Q Consensus 1 ~~~~l~gl~v~~~~~~~~~~~~I~~i~~~~a~~~~F~~~~g~~itv~~Yf~~~y~i~l~~p~~Plv~~~~~~k--~~~~P 78 (426)
+++.|+|++|.++|+++.+.|+|.+|+++++++.+|.+.+|+.+||+|||+++||++|+||+||||.++..++ .+|+|
T Consensus 25 ~~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~g~~itv~eYf~~~Y~i~L~~p~~Pll~~~~~~~~~~~~lP 104 (135)
T PF02170_consen 25 LERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDNDGKEITVAEYFKEKYNIRLKYPDLPLLNVKSKKKKQPIYLP 104 (135)
T ss_dssp HHHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETTSEEEEHHHHHHHTCT---SSTTSEEEEECSTTTTTCEEEE
T ss_pred HHHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCCCceEEhHHHHHhhhhcccccCCCCeEEeccCCCCceEEEC
Confidence 3678999999999987779999999999999999996657999999999999999999999999999998776 89999
Q ss_pred ccceEecCCCccCCCCCHHHHHHHHHHhcC
Q 037086 79 MELSRIVAGQRYTKRFNERQVTALLRATCQ 108 (426)
Q Consensus 79 ~El~~i~~~Q~~~~~l~~~~~~~~i~~~~~ 108 (426)
||||.|+|+|++.+++.+.+.+.|++.+|.
T Consensus 105 ~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~ 134 (135)
T PF02170_consen 105 PELCFIVPGQRYKKKLFTCQPSIMIRFACS 134 (135)
T ss_dssp CCGEEEETTTBB-SS--HHHHHHHHHHHSS
T ss_pred hhHhcccCCcHHHHhccHHHHHHHHHHHhc
Confidence 999999999999999999999999999875
No 9
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=99.86 E-value=2.8e-21 Score=194.66 Aligned_cols=158 Identities=21% Similarity=0.314 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHHHHhhCCCCceEEEEEeCCCC------Cc-hhhHhhhhccccceeeeeecccccccC--CHhHHHHHHH
Q 037086 237 NQIEKALVDVHNRTTQQGKQLQLLIIILPDDK------GS-YGRIKRVCETELGIVSQCCQPKQASKL--SMQYFENVAL 307 (426)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~~------~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~--~~~~~~ni~l 307 (426)
..+..+++...++. ...++++||++|++. .+ |..||+++ ...||+||||..+|+.+. ..+++.||++
T Consensus 94 ~~~~~a~~~~~~~~---~~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial 169 (404)
T cd04659 94 EAIIEAVDLALSES---SQGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLAL 169 (404)
T ss_pred HHHHHHHHHHHHhh---cCCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHH
Confidence 34555555555443 247899999999875 56 99999987 689999999999999864 5789999999
Q ss_pred hhhcccCceeeeeccccccCCCccCCCCeEEeeecccCCCCCCCCCCeEEEEEEeeCCCCccceeeEEeecCCchhhh--
Q 037086 308 KINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQARHEEII-- 385 (426)
Q Consensus 308 KiN~KlGG~n~~l~~~~~~~~p~l~~~~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~~~~y~~~~~~Q~~~~e~i-- 385 (426)
|||+|+||+||.|+.+ ...+|||||+||+|+..+. .+++|++..+| .+...+ ...+...++.+
T Consensus 170 ~i~aKlGG~pW~l~~~--------~~~~~~iIGidv~~~~~~~---~~~~~~a~vf~-~~g~g~---~~~~~~~~~~~~~ 234 (404)
T cd04659 170 ALYAKLGGIPWKLDAD--------SDPADLYIGIGFARSRDGE---VRVTGCAQVFD-SDGLGL---ILRGAPIEEPTED 234 (404)
T ss_pred HHHHhcCCCceEcccC--------CCCCeEEEEEEEEEcCCCC---EEEEEEEEEEc-CCCCEE---EEecCccCCcccc
Confidence 9999999999999752 1368999999999998642 23333333344 332111 11222223322
Q ss_pred ---hhhhhccCCCCCCcchhhHHHHHHHHHHHHcCC-CCCceEeC
Q 037086 386 ---QDLYKSIQDPQRGLVHGGMIRELLIAFNRSTNR-KPESIIFY 426 (426)
Q Consensus 386 ---~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~n~~-~P~~IiiY 426 (426)
+++ +++++++|..|++.|+. +|+|||||
T Consensus 235 ~~~~~~-------------~~~l~~~l~~y~~~~~~~~P~rIiih 266 (404)
T cd04659 235 RSPADL-------------KDLLKRVLEGYRESHRGRDPKRLVLH 266 (404)
T ss_pred cCHHHH-------------HHHHHHHHHHHHHHcCCCCCeEEEEE
Confidence 345 99999999999999998 99999997
No 10
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.81 E-value=5.5e-20 Score=152.09 Aligned_cols=83 Identities=29% Similarity=0.431 Sum_probs=75.4
Q ss_pred hhhccCCEEEEeecCCceeEEEecccCCCCCCeEEecCCCceeeHHHHHHHhcCccccCCCCceEecCCC---CCccccc
Q 037086 2 EEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSE---ARPIYLP 78 (426)
Q Consensus 2 ~~~l~gl~v~~~~~~~~~~~~I~~i~~~~a~~~~F~~~~g~~itv~~Yf~~~y~i~l~~p~~Plv~~~~~---~k~~~~P 78 (426)
.++|+|++|.++|.+.++.|+|.+|++.+|++. |.+.+|+.+||+|||+++||++|+||+||||.+++. .+.+|+|
T Consensus 30 ~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~~~~isv~dYf~~kY~~~l~~p~~Pll~~~~~~~~~~~~~lp 108 (115)
T cd02825 30 TKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSDGKEITFADYFKERYNLTLTDLNQPLLIVKFSSKKSYSILLP 108 (115)
T ss_pred HHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCCCCEEEHHHHHHHHcCCcccCCCCCEEEecCcccCCCceEEc
Confidence 578999999999976678999999999998887 756678899999999999999999999999999987 6788999
Q ss_pred ccceEec
Q 037086 79 MELSRIV 85 (426)
Q Consensus 79 ~El~~i~ 85 (426)
||||.|+
T Consensus 109 ~Elc~i~ 115 (115)
T cd02825 109 PELCVIT 115 (115)
T ss_pred hheEEeC
Confidence 9999874
No 11
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.81 E-value=3.3e-20 Score=152.94 Aligned_cols=84 Identities=25% Similarity=0.435 Sum_probs=75.4
Q ss_pred ChhhccCCEEEEeecCCceeEEEecccCCCCCCeEEecCCCceeeHHHHHHHhcCccccCCCCceEecCCCC--------
Q 037086 1 VEEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEA-------- 72 (426)
Q Consensus 1 ~~~~l~gl~v~~~~~~~~~~~~I~~i~~~~a~~~~F~~~~g~~itv~~Yf~~~y~i~l~~p~~Plv~~~~~~-------- 72 (426)
++++|+|+.|.++| +++.|+|.+|++++++.++|...+|..+||+|||+++||++|+||+||||.++.++
T Consensus 24 ~~~~l~g~~V~t~y--n~k~Y~I~~I~~~~~p~s~F~~~~~~~~S~~~Yy~~kY~i~I~~~~qPLL~~~~k~~~~~~~~~ 101 (117)
T cd02845 24 CEKELIGSIVLTRY--NNKTYRIDDIDFDKTPLSTFKKSDGTEITFVEYYKKQYNIEITDLNQPLLVSRPKRRDPRGGEK 101 (117)
T ss_pred HHHHcCCCEEEEee--CCeEEEEeEecCCCCccccCcCCCCCeeeHHHHHHHHcCCccccCCCCcEEeeccccccCCCCC
Confidence 36789999999999 57999999999999999999655567899999999999999999999999998633
Q ss_pred CcccccccceEecC
Q 037086 73 RPIYLPMELSRIVA 86 (426)
Q Consensus 73 k~~~~P~El~~i~~ 86 (426)
+.+|+|||||.+++
T Consensus 102 ~~iyL~pElC~ltg 115 (117)
T cd02845 102 EPIYLIPELCFLTG 115 (117)
T ss_pred cEEEEchHHhhhcC
Confidence 47999999999984
No 12
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.80 E-value=1.2e-19 Score=150.30 Aligned_cols=85 Identities=48% Similarity=0.796 Sum_probs=76.0
Q ss_pred ChhhccCCEEEEeecC-CceeEEEecccCCCCCCeEEecCCC-ceeeHHHHHHHhcCccccCCCCceEecCCCCCccccc
Q 037086 1 VEEALKGIKVVLTHVE-YNRSYKITGISSQPMSQLMFIDDNG-TRMSVIQYFLEKSNIALQFTSLPAVLAGSEARPIYLP 78 (426)
Q Consensus 1 ~~~~l~gl~v~~~~~~-~~~~~~I~~i~~~~a~~~~F~~~~g-~~itv~~Yf~~~y~i~l~~p~~Plv~~~~~~k~~~~P 78 (426)
++++|+|++|.++|.+ ..|.|+|.||++.++.+.+|.+++| +.+||+|||+++||++|+||++|||++|+..+.+|+|
T Consensus 28 ~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~~~y~~~l~~p~lP~v~~g~~~~~~~~P 107 (114)
T cd02846 28 LKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFKEKYNIRLKYPNLPCLQVGRKGKPNYLP 107 (114)
T ss_pred HHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHHHHcCCcccCCCCCEEEeCCCCCCcEec
Confidence 3678999999999975 3679999999999988999954444 5899999999999999999999999999888899999
Q ss_pred ccceEec
Q 037086 79 MELSRIV 85 (426)
Q Consensus 79 ~El~~i~ 85 (426)
||+|.|+
T Consensus 108 ~Elc~i~ 114 (114)
T cd02846 108 MELCNIV 114 (114)
T ss_pred ceeEEeC
Confidence 9999974
No 13
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.61 E-value=7e-16 Score=129.92 Aligned_cols=82 Identities=28% Similarity=0.374 Sum_probs=69.5
Q ss_pred hhhccCCEEEEeecCCceeEEEecccCCCCCCeEEecCCC-ceeeHHHHHHHhcCccccCCCCceEecCC----------
Q 037086 2 EEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNG-TRMSVIQYFLEKSNIALQFTSLPAVLAGS---------- 70 (426)
Q Consensus 2 ~~~l~gl~v~~~~~~~~~~~~I~~i~~~~a~~~~F~~~~g-~~itv~~Yf~~~y~i~l~~p~~Plv~~~~---------- 70 (426)
.+.|+|+.|+++| +++.|+|.+|+ +.+++++|...+| +.+|++|||+++||++|+||+||||.++.
T Consensus 28 ~~~l~g~~V~t~h--n~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~~~~~~NlL~~ 104 (135)
T cd02844 28 ACDLKGSVVTAPH--NGRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLHNLLHN 104 (135)
T ss_pred HHHhcCCEEEEcC--CCcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEecccccceeccc
Confidence 4689999999999 58999999999 8999999944445 67999999999999999999999998651
Q ss_pred ----C------C---CcccccccceEecC
Q 037086 71 ----E------A---RPIYLPMELSRIVA 86 (426)
Q Consensus 71 ----~------~---k~~~~P~El~~i~~ 86 (426)
+ . ..+++|||||.+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 105 RFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred ccccccccccccccceEEEeChHHhcccc
Confidence 0 1 14689999999864
No 14
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.04 E-value=2.8e-10 Score=92.57 Aligned_cols=66 Identities=12% Similarity=0.162 Sum_probs=57.6
Q ss_pred hhccCCEEEEeecCCc--eeEEEecccCCCCCCeEEecCCCceeeHHHHHHHhcCccccCCCCceEecCC
Q 037086 3 EALKGIKVVLTHVEYN--RSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGS 70 (426)
Q Consensus 3 ~~l~gl~v~~~~~~~~--~~~~I~~i~~~~a~~~~F~~~~g~~itv~~Yf~~~y~i~l~~p~~Plv~~~~ 70 (426)
+.+.|..|.+.|.+.. +.|+|.+|.++.++.++| ..++ .+|++|||+++||+.|.+++||||.++.
T Consensus 39 ~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F-~~~~-~~Ty~eYyk~KY~I~I~~~~QPLL~v~~ 106 (122)
T cd02843 39 EDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKF-PGPE-YETFEEYYKKKYKLDIQNLNQPLLDVDH 106 (122)
T ss_pred HHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCC-CCCC-CccHHHHHHHhcCeEeccCCCCcEeecC
Confidence 4688999999995321 799999999999999999 3334 7999999999999999999999999974
No 15
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.018 Score=58.62 Aligned_cols=200 Identities=14% Similarity=0.119 Sum_probs=111.6
Q ss_pred eecCCCeeeeccCCcceeecCCCccccccccccccCcccceeEEEE-eC-CCCCCChHHHHHHHHHHHHHhcC-CcC--C
Q 037086 150 RILPAPMLKYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTCVN-FS-TDLDPDVPFQFCQGLVDVCNSKG-MVF--N 224 (426)
Q Consensus 150 rvL~~P~i~~~~~~~~~~~~p~~g~W~~~~~~f~~~~~~~~w~vi~-~~-~~~~~~~~~~f~~~l~~~~~~~G-~~~--~ 224 (426)
+.-.+|.|..+..+++..+ ...-|... ..+.|.....|.-+. +. ..-=...+..+.+.+....++.+ +.. .
T Consensus 305 d~ek~pdiv~g~~gktti~--n~nl~~yl--py~~p~~~~l~nei~~iv~d~El~~rlk~~~kkv~~~fkn~n~i~~k~e 380 (685)
T COG1431 305 DPEKGPDIVIGTEGKTTID--NVNLFCYL--PYFKPDGTMLWNEISPIVTDSELLTRLKSTIKKVVYGFKNSNGIDWKVE 380 (685)
T ss_pred CcccCCceEecccceeeEe--hhhhhhhh--cccccccceecceeeEEEehhhhhhHHHHHHHHHHHHHHhccchhhhcc
Confidence 3344567776663332211 12233321 223344444555432 11 11113456788888988888887 332 2
Q ss_pred CCCCccccCCCchHHHHHHHHHHHHHhhCCCCceEEEEEeCCCCCc-hhhHhhhhccccceeeeeecccccccCCHhHHH
Q 037086 225 PRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDDKGS-YGRIKRVCETELGIVSQCCQPKQASKLSMQYFE 303 (426)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~~~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ 303 (426)
.+. +++.+.++. ....|..+.+.+ ....+...-+-+++. |+.+|+ .+.-|++|.+.-.+..+.-.-+++
T Consensus 381 g~~-l~~a~~r~~-~kddl~~iIkei-----d~ee~~k~e~ykdd~~YailKr---ld~~ipsqvil~~n~rk~~Kg~~t 450 (685)
T COG1431 381 GLT-LHVAGKRPK-MKDDLTKIIKEI-----DVEELKKQEMYKDDVKYAILKR---LDETIPSQVILDPNNRKPYKGTKT 450 (685)
T ss_pred cce-eeecccchh-hhccchhhhhhh-----hhhhhccccccccchHHHHHHh---hcccCcceeeeccccCCcchhhhh
Confidence 111 222221211 112233333321 122233333445556 999998 345599999999998877778999
Q ss_pred HHHHhhhcccCceeeeeccccccCCCccCCCCeEEeeecccCCCCCCCCCCeEEEEEEeeCC-CCccceeeE
Q 037086 304 NVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDW-PEVTKYRGL 374 (426)
Q Consensus 304 ni~lKiN~KlGG~n~~l~~~~~~~~p~l~~~~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~-~~~~~y~~~ 374 (426)
|++.|+.+|.+|+++.+-.. ..| -+-|+|+||+.-.-+ ...+-|++..+|- ....+|...
T Consensus 451 nla~~~~~ktlgqpY~~r~~---~gp-----vDaivGlDvsr~~~g---n~tV~gct~~f~seg~l~eyy~t 511 (685)
T COG1431 451 NLASKRYLKTLGQPYLKRNG---LGP-----VDAIVGLDVSRVSEG---NWTVEGCTSCFVSEGGLEEYYHT 511 (685)
T ss_pred HHHHHHHHHhcCCceeeecc---CCC-----ccceeeeeeeEEeeC---CeEEeeeeEEEeccCceEEeeec
Confidence 99999999999999998653 222 358999999997643 3344444443330 234455443
No 16
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=75.99 E-value=3.3 Score=25.73 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCCCCceEe
Q 037086 406 RELLIAFNRSTNRKPESIIF 425 (426)
Q Consensus 406 ~~~l~~f~~~n~~~P~~Iii 425 (426)
..++..|.+.||++|..|-|
T Consensus 14 a~rv~~f~~~ngRlPnyV~i 33 (33)
T PF09373_consen 14 ASRVNNFYESNGRLPNYVSI 33 (33)
T ss_pred HHHHHHHHHHcCCCCCeeeC
Confidence 55889999999999988743
No 17
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=67.54 E-value=26 Score=31.90 Aligned_cols=42 Identities=21% Similarity=0.401 Sum_probs=26.4
Q ss_pred CCeEEeeecccCCCCCCCCCCeEEEEEEeeCCCCccceeeEEeecC
Q 037086 334 RPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQA 379 (426)
Q Consensus 334 ~~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~~~~y~~~~~~Q~ 379 (426)
++.+|-|+|+||... +.-.++++|- ++|++..-....++..+
T Consensus 24 ~~~~I~gvDiS~~~~---~~~~vaa~Vv-~~~~~~~~~~~~~~~~~ 65 (208)
T cd06559 24 EVRLVAGVDVSYKKD---GDLAVAAAVV-LDYPDLEVVETAVAVGE 65 (208)
T ss_pred CccEEEEEEeeeccC---CCeEEEEEEE-EECCCCcEEEEEEEEEe
Confidence 567999999999752 2456666654 45555555555444333
No 18
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=56.69 E-value=27 Score=30.22 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=35.0
Q ss_pred CCeEEeeecccCCCCCCCCCCeEEEEEEeeCCCCccc-eeeEEeecCCchhhhhhhhhccCCCCCCcchhhHHHHHHHHH
Q 037086 334 RPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAF 412 (426)
Q Consensus 334 ~~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~~~~-y~~~~~~Q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~l~~f 412 (426)
.|.-|-++|+||-.+ .-.|+++|.=.| ..+.+ .+=.+.+... +-.+|. ..|.+++..++...
T Consensus 10 ~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~-G~~~k~~YR~f~i~~~--~~~dDy----------~~M~Evl~RR~~~~ 72 (155)
T PF08459_consen 10 LPRRIECFDISHIQG----SDTVGSMVVFEN-GKPDKSEYRRFNIKTV--DGGDDY----------AAMREVLTRRFKRL 72 (155)
T ss_dssp --SEEEEEEEEECTT----TCEEEEEEEEET-TEE-GGG-EEEEEE----STT-HH----------HHHHHHHHHHHCCC
T ss_pred CCCEEEEEECcccCC----cccEEEEEEEEC-CccChhhCceEecCCC--CCCcHH----------HHHHHHHHHHHhcc
Confidence 467899999999874 457888887555 43331 2223444421 111332 01133344444333
Q ss_pred HHHcCCCCCceEe
Q 037086 413 NRSTNRKPESIIF 425 (426)
Q Consensus 413 ~~~n~~~P~~Iii 425 (426)
.+....+|+-|++
T Consensus 73 ~~~~~~lPDLilI 85 (155)
T PF08459_consen 73 KEEKEPLPDLILI 85 (155)
T ss_dssp HHHT----SEEEE
T ss_pred cccCCCCCCEEEE
Confidence 4444579998886
No 19
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=53.15 E-value=50 Score=26.97 Aligned_cols=69 Identities=25% Similarity=0.321 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhCCCCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcc
Q 037086 242 ALVDVHNRTTQQGKQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVK 312 (426)
Q Consensus 242 ~l~~~~~~~~~~~~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~K 312 (426)
.+.+..+.+..++..|.|+++.+.+.... |...|.-...+.||.+..+.... ....+-+...+.++|.-
T Consensus 15 ~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~--~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 15 ELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPE--DISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-T--TSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCC--CcCHHHHHHHHHHHhCC
Confidence 33333333333345688888777765543 98888777788999998887732 22344556677777754
No 20
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.31 E-value=1.3e+02 Score=28.87 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=34.0
Q ss_pred CCCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhc
Q 037086 254 GKQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINV 311 (426)
Q Consensus 254 ~~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~ 311 (426)
+..|.|+++...+.... |...|.-...+.||.+..+....- ....-+.+.+.++|.
T Consensus 28 g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 28 GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNEN--TTQNELLALINTLNH 85 (282)
T ss_pred CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 34677777666655443 888777667778888877766431 112224456666665
No 21
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.73 E-value=1.4e+02 Score=28.64 Aligned_cols=57 Identities=26% Similarity=0.253 Sum_probs=32.8
Q ss_pred CCCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcc
Q 037086 254 GKQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVK 312 (426)
Q Consensus 254 ~~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~K 312 (426)
+..|.|+++...+...+ |...|.-...+.||.+..+.... ....+-+.+.+.++|.-
T Consensus 30 g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~t~~el~~~I~~lN~D 88 (284)
T PRK14193 30 GITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPA--DATQEELNAVIDELNAD 88 (284)
T ss_pred CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 34577766665555433 87777766777888877765532 11122234555666554
No 22
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.54 E-value=1.5e+02 Score=28.76 Aligned_cols=37 Identities=30% Similarity=0.292 Sum_probs=20.3
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecc
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQP 291 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~ 291 (426)
..|.|+++...+.... |...|.-...+.||.+-.+..
T Consensus 32 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l 70 (301)
T PRK14194 32 IEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRL 70 (301)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 3456655555444333 666665555566666655544
No 23
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.49 E-value=1.6e+02 Score=28.45 Aligned_cols=56 Identities=23% Similarity=0.212 Sum_probs=33.5
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcc
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVK 312 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~K 312 (426)
..|.|+++...+...+ |...|.-...+.||.+..+....- ....-+..++.++|.-
T Consensus 31 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 31 LFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPST--ISESSLIEKINELNND 88 (294)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 4577777666555443 888777777788888877766321 1122244555666544
No 24
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.02 E-value=1.6e+02 Score=28.32 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=30.7
Q ss_pred CCCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhc
Q 037086 254 GKQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINV 311 (426)
Q Consensus 254 ~~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~ 311 (426)
+..|.|+++...+.... |...|.-...+.||.+-.+....- ....=+...+.++|.
T Consensus 28 g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~ 85 (282)
T PRK14169 28 DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEA--TTQADLLAKVAELNH 85 (282)
T ss_pred CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 34566766655555433 777776666677777766655321 111223345555655
No 25
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.90 E-value=1.7e+02 Score=28.09 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=32.3
Q ss_pred CCCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhc
Q 037086 254 GKQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINV 311 (426)
Q Consensus 254 ~~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~ 311 (426)
+..|.|+++...+.... |...|.-...+.||.+..+....- ....-+...+.++|.
T Consensus 30 g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~~l~~~I~~LN~ 87 (288)
T PRK14171 30 NASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTT--IHTNDLISKINELNL 87 (288)
T ss_pred CCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHcC
Confidence 34577766666555443 877776666778888877665321 122234455556654
No 26
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.92 E-value=1.6e+02 Score=28.23 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=35.9
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcc
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVK 312 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~K 312 (426)
..|.|+++...+...+ |...|.-...+.||.+..+.... .....-+.+.+.++|.-
T Consensus 30 ~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~~l~~~I~~lN~D 87 (281)
T PRK14183 30 IVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPS--TISQKEILETIAMMNNN 87 (281)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 4677877776665544 98888777788999987776532 11222244666677643
No 27
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.46 E-value=2e+02 Score=27.66 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=34.7
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcc
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVK 312 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~K 312 (426)
..|.|+++.+.+...+ |...|.-...+.||.+-.+....- ....-+.+.+.++|.-
T Consensus 37 ~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~LN~D 94 (287)
T PRK14176 37 ITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPAD--TTQEELLELIDSLNKR 94 (287)
T ss_pred CCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 4577777666655443 888877777788888877665321 1223344566677653
No 28
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.36 E-value=1.4e+02 Score=28.81 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=32.9
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhc
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINV 311 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~ 311 (426)
..|.|+++...+.... |...|.-...+.||.+..+....- ....-+...+.++|.
T Consensus 30 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~ 86 (293)
T PRK14185 30 KRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESD--VTEEELLAKVRELNQ 86 (293)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 4577777666655443 888777777788888877655321 112223455566664
No 29
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.30 E-value=1.7e+02 Score=28.06 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=31.9
Q ss_pred CCCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcc
Q 037086 254 GKQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVK 312 (426)
Q Consensus 254 ~~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~K 312 (426)
+..|.|+++...+..++ |...|.-...+.||.+-.+....- ....-+...+.++|.-
T Consensus 30 g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 88 (284)
T PRK14190 30 GIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPAD--ITEEELLALIDRLNAD 88 (284)
T ss_pred CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 34566766665554433 777776666677877776655321 1122234555566554
No 30
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.18 E-value=1.7e+02 Score=28.06 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=24.5
Q ss_pred CCCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeeccc
Q 037086 254 GKQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPK 292 (426)
Q Consensus 254 ~~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~ 292 (426)
+..|.|+++...+...+ |...|.-...+.||.+-.+...
T Consensus 29 g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~ 69 (284)
T PRK14170 29 GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELP 69 (284)
T ss_pred CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 34566766665555433 7777766666777777666553
No 31
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.13 E-value=1.7e+02 Score=28.03 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=33.1
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcc
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVK 312 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~K 312 (426)
..|.|+++...+.... |...|.-...+.||.+..+....- ....-+.+++.++|.-
T Consensus 30 ~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 87 (282)
T PRK14180 30 ITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEH--TTESELLELIDQLNND 87 (282)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 4577777666655443 877776667788888877755331 1122344556666543
No 32
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.38 E-value=1.8e+02 Score=27.94 Aligned_cols=56 Identities=27% Similarity=0.261 Sum_probs=31.2
Q ss_pred CCCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhc
Q 037086 254 GKQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINV 311 (426)
Q Consensus 254 ~~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~ 311 (426)
+..|.|+++...+...+ |...|.-...+.||.+-.+....- ...+-+.+.+.++|.
T Consensus 28 g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~t~~~l~~~I~~lN~ 85 (282)
T PRK14182 28 GVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPAT--TTQAELLALIARLNA 85 (282)
T ss_pred CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 34566766665555433 777776666677877766654321 112224455556654
No 33
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.13 E-value=2.5e+02 Score=26.93 Aligned_cols=66 Identities=21% Similarity=0.168 Sum_probs=40.1
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcc--cCceeeeecc
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVK--VGGRNTVLVD 322 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~K--lGG~n~~l~~ 322 (426)
..|.|+++...+...+ |..+|.....+.||.+..+.... .....-+..++.++|.. ..|+|-.++-
T Consensus 32 ~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~--~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPl 101 (283)
T PRK14192 32 RTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQ--ETTTEQLLAKIEELNANPDVHGILLQHPV 101 (283)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCC--CCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 4577777666655443 88888777778888887776621 01122355666667664 5666665543
No 34
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.30 E-value=1.9e+02 Score=27.81 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=29.8
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhc
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINV 311 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~ 311 (426)
..|.|+++...+.... |...|.-...+.||.+-.+....- ....-+...+.++|.
T Consensus 31 ~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 31 FTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEET--ATEEEVLNELNRLNN 87 (286)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhC
Confidence 4566666655554433 777776666677777766655321 112223345555553
No 35
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.64 E-value=2.1e+02 Score=27.65 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=19.5
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecc
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQP 291 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~ 291 (426)
..|.|+++.+.+...+ |...|.....+.||.+-.+..
T Consensus 30 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l 68 (297)
T PRK14167 30 VTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEI 68 (297)
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 3455555544444332 666655555566666655444
No 36
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.27 E-value=2.2e+02 Score=27.54 Aligned_cols=56 Identities=23% Similarity=0.221 Sum_probs=33.8
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcc
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVK 312 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~K 312 (426)
..|.|+++...+.... |...|.-...+.||.+-.+....- ....-+...+.++|.-
T Consensus 30 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 87 (295)
T PRK14174 30 KVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPAD--TTEEHLLKKIEDLNND 87 (295)
T ss_pred CCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 4577777666655443 888777777788888877655321 1122344555666654
No 37
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.90 E-value=2.3e+02 Score=27.17 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=35.6
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhc--ccCceeee
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINV--KVGGRNTV 319 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~--KlGG~n~~ 319 (426)
..|.|+++...+...+ |...|.-...+.||.+..+.... .....-+...+.++|. ..-|+--.
T Consensus 30 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~~l~~~I~~lN~d~~V~GIlvq 96 (286)
T PRK14184 30 RAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPA--DTTQEELEDLIAELNARPDIDGILLQ 96 (286)
T ss_pred CCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCCCcCceEEEe
Confidence 4566766665555443 87777666777888887765532 1122234456666665 33444433
No 38
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.31 E-value=2.5e+02 Score=27.15 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=22.2
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecc
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQP 291 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~ 291 (426)
..|.|+++...+.... |...|.-...+.||.+-.+..
T Consensus 31 ~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l 69 (296)
T PRK14188 31 VTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKL 69 (296)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 3566666655554433 777666666677777665543
No 39
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=29.58 E-value=2.7e+02 Score=26.96 Aligned_cols=37 Identities=32% Similarity=0.345 Sum_probs=23.2
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecc
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQP 291 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~ 291 (426)
..|.|+++...+.... |...|.-...+.||.+-.+..
T Consensus 38 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l 76 (299)
T PLN02516 38 KVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDL 76 (299)
T ss_pred CCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 3566766655544433 777776666677777766655
No 40
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.32 E-value=2.8e+02 Score=26.64 Aligned_cols=37 Identities=27% Similarity=0.213 Sum_probs=21.4
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecc
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQP 291 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~ 291 (426)
..|.|+++...+.... |...|.-...+.||.+-.+..
T Consensus 31 ~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l 69 (285)
T PRK14189 31 HQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRY 69 (285)
T ss_pred CCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 3566666555544333 766666556667776655544
No 41
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=29.25 E-value=2.4e+02 Score=27.93 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=17.5
Q ss_pred CceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecc
Q 037086 256 QLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQP 291 (426)
Q Consensus 256 ~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~ 291 (426)
.|.|+++.+.+..+. |...|.-...+.||.+-.+..
T Consensus 86 ~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l 123 (345)
T PLN02897 86 VPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAEL 123 (345)
T ss_pred CCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 344544444443322 555554444555555555443
No 42
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.29 E-value=2.6e+02 Score=26.71 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=32.6
Q ss_pred CceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcc
Q 037086 256 QLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVK 312 (426)
Q Consensus 256 ~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~K 312 (426)
.|.|+++...+.... |...|.-...+.||.+..+....- ....-+.+.+.++|.-
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~d 88 (278)
T PRK14172 32 IPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDES--ISEEDLINEIEELNKD 88 (278)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 467777666655443 887776666788888877655321 1122244556667654
No 43
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.77 E-value=2.5e+02 Score=26.91 Aligned_cols=55 Identities=22% Similarity=0.252 Sum_probs=31.5
Q ss_pred CceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcc
Q 037086 256 QLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVK 312 (426)
Q Consensus 256 ~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~K 312 (426)
.|.|+++...+.... |...|.-...+.||.+..+.... ....+=+...+.++|.-
T Consensus 33 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~s~~el~~~I~~lN~d 89 (285)
T PRK10792 33 APGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPE--TTSEAELLALIDELNAD 89 (285)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCC
Confidence 466766655555433 87777666677888777775532 11122233555666654
No 44
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.48 E-value=2.7e+02 Score=26.86 Aligned_cols=54 Identities=24% Similarity=0.212 Sum_probs=29.1
Q ss_pred CceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhc
Q 037086 256 QLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINV 311 (426)
Q Consensus 256 ~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~ 311 (426)
.|.|+++...+.... |...|.-...+.||.+-.+.... .....-+..++.++|.
T Consensus 32 ~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~--~~~~~el~~~I~~lN~ 87 (297)
T PRK14186 32 PPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPA--DTSQAEVEALIAQLNQ 87 (297)
T ss_pred CceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhC
Confidence 466666655544333 77766666667777776665521 1112223345556655
No 45
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.22 E-value=3e+02 Score=26.45 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=29.8
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhc
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINV 311 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~ 311 (426)
..|.|+++...+...+ |...|.-...+.||.+-.+.... .....-+..++.++|.
T Consensus 31 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~~~~l~~~I~~lN~ 87 (284)
T PRK14179 31 IVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPE--TISQEELLDLIERYNQ 87 (284)
T ss_pred CCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhC
Confidence 3566666655554433 77766555667777776555432 1112233456666654
No 46
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.15 E-value=42 Score=30.45 Aligned_cols=100 Identities=11% Similarity=0.161 Sum_probs=53.7
Q ss_pred hhccCCEEEEeecCCce----eEEEecccCCCCCCeEEecCCC------------ceeeHHHHHHHhcCcc-ccC-CC--
Q 037086 3 EALKGIKVVLTHVEYNR----SYKITGISSQPMSQLMFIDDNG------------TRMSVIQYFLEKSNIA-LQF-TS-- 62 (426)
Q Consensus 3 ~~l~gl~v~~~~~~~~~----~~~I~~i~~~~a~~~~F~~~~g------------~~itv~~Yf~~~y~i~-l~~-p~-- 62 (426)
+.|.+++=..|-.+..| +.-|.||+.+.+|...-++++| +.-+|.||+++.|+-. +.. -+
T Consensus 110 RyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~~~~~~~~i 189 (249)
T KOG0183|consen 110 RYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEAIATEGETI 189 (249)
T ss_pred HHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhcccccccccccHH
Confidence 34445544444333334 6678889887655432256666 3689999999988643 110 00
Q ss_pred ----CceEecCCCCCcccccccceEecCCCccCCCCCHHHHHHHHHHh
Q 037086 63 ----LPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRAT 106 (426)
Q Consensus 63 ----~Plv~~~~~~k~~~~P~El~~i~~~Q~~~~~l~~~~~~~~i~~~ 106 (426)
.-|+++-..+ --=+|+-.+.+++.++ .|+.+...++++..
T Consensus 190 kL~ir~LleVvqs~---~~nie~aVm~~~~~~~-~l~~~~I~~~v~~i 233 (249)
T KOG0183|consen 190 KLAIRALLEVVQSG---GKNIEVAVMKRRKDLK-MLESEEIDDIVKEI 233 (249)
T ss_pred HHHHHHHHHHhhcC---CCeeEEEEEecCCcee-ecCHHHHHHHHHHH
Confidence 0111111111 1125777777776542 46777776666543
No 47
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.73 E-value=2.8e+02 Score=26.85 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecc
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQP 291 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~ 291 (426)
..|.|+++...+.... |...|.-...+.||.+-.+..
T Consensus 32 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l 70 (297)
T PRK14168 32 KVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQ 70 (297)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 3566766655554433 777776666677777765543
No 48
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.65 E-value=1.2e+02 Score=23.56 Aligned_cols=74 Identities=11% Similarity=0.064 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCcCCCCCCccccCCCchHHHHHHHHHHHHHhhCCCCceEEEEEeCCCCCc-hhhHhhhhccccceee
Q 037086 208 FCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDDKGS-YGRIKRVCETELGIVS 286 (426)
Q Consensus 208 f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~~~~-Y~~iK~~~~~~~gV~T 286 (426)
....+.+.++++|..+-. .-.......-...|.... .++|+|||++.--+.. +..+|+.| .+.|+|.
T Consensus 11 ~~~~~~~~~~~~G~~~~~----hg~~~~~~~~~~~l~~~i-------~~aD~VIv~t~~vsH~~~~~vk~~a-kk~~ip~ 78 (97)
T PF10087_consen 11 RERRYKRILEKYGGKLIH----HGRDGGDEKKASRLPSKI-------KKADLVIVFTDYVSHNAMWKVKKAA-KKYGIPI 78 (97)
T ss_pred cHHHHHHHHHHcCCEEEE----EecCCCCccchhHHHHhc-------CCCCEEEEEeCCcChHHHHHHHHHH-HHcCCcE
Confidence 345666777778876432 100111111222233222 4789999999877777 89999775 5789988
Q ss_pred eeecccc
Q 037086 287 QCCQPKQ 293 (426)
Q Consensus 287 Q~v~~~t 293 (426)
-.+....
T Consensus 79 ~~~~~~~ 85 (97)
T PF10087_consen 79 IYSRSRG 85 (97)
T ss_pred EEECCCC
Confidence 7776444
No 49
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.61 E-value=3.3e+02 Score=26.12 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=35.9
Q ss_pred CceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhc--ccCceeee
Q 037086 256 QLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINV--KVGGRNTV 319 (426)
Q Consensus 256 ~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~--KlGG~n~~ 319 (426)
.|.|+++...+.... |...|.-...+.||.+-.+.... .....-+.+.+.++|. ..-|+--.
T Consensus 33 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~s~~el~~~I~~lN~D~~V~GIlvq 98 (284)
T PRK14177 33 IPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKE--QTTTEELLGVIDKLNLDPNVDGILLQ 98 (284)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHHhCCCCCCeEEEc
Confidence 467766666555433 87777666677888877766532 1122334456667765 44555443
No 50
>PF02427 PSI_PsaE: Photosystem I reaction centre subunit IV / PsaE; InterPro: IPR003375 PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains []. This subunit may form complexes with ferredoxin and ferredoxin-oxidoreductase in the photosystem I reaction centre.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009538 photosystem I reaction center; PDB: 1PSF_A 1PSE_A 2WSF_E 2WSC_E 2O01_E 2WSE_E 1GXI_E 1JB0_E 3PCQ_E 1QP2_A ....
Probab=25.42 E-value=90 Score=22.18 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=18.7
Q ss_pred EEEEEeeCCCCccceeeEEeecC
Q 037086 357 AAVVASMDWPEVTKYRGLVSAQA 379 (426)
Q Consensus 357 ~avv~S~d~~~~~~y~~~~~~Q~ 379 (426)
+|-|+|+| .+..+|+-.+++-.
T Consensus 20 vGtV~svd-qs~i~YPV~VRF~k 41 (61)
T PF02427_consen 20 VGTVASVD-QSGIRYPVVVRFDK 41 (61)
T ss_dssp EEEEEEET-TSSSSSSEEEE-SS
T ss_pred cceEEEEc-cCCccccEEEEEEE
Confidence 78889999 99999999988765
No 51
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=24.59 E-value=5.2e+02 Score=25.07 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCcC----C-CCCCccccCCC--chHHHHHHHHHHHHHhhCCCCceEEEEEeCCCCC-----c-hhhHhh
Q 037086 210 QGLVDVCNSKGMVF----N-PRPVIPISSSN--PNQIEKALVDVHNRTTQQGKQLQLLIIILPDDKG-----S-YGRIKR 276 (426)
Q Consensus 210 ~~l~~~~~~~G~~~----~-~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~~~-----~-Y~~iK~ 276 (426)
.+|++.+.++||+. + ++|.+.-.+.. +.+-.+.|+++.+.++ ..+++|++.|-|..+. . +..|+.
T Consensus 18 ~~l~~f~~~~kmN~YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~--~~~V~Fv~aisPg~~~~~s~~~d~~~L~~ 95 (306)
T PF07555_consen 18 LDLIRFLGRYKMNTYIYAPKDDPYHRSKWREPYPEEELAELKELADAAK--ANGVDFVYAISPGLDICYSSEEDFEALKA 95 (306)
T ss_dssp HHHHHHHHHTT--EEEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHH--HTT-EEEEEEBGTTT--TSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceEEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHH--HcCCEEEEEECcccccccCcHHHHHHHHH
Confidence 46777888888873 1 22443222211 3333455666555543 3689999999998753 2 666766
Q ss_pred hhcc--ccceeeeeeccccccc-----------CCHhHHHHHHHhhhcccC
Q 037086 277 VCET--ELGIVSQCCQPKQASK-----------LSMQYFENVALKINVKVG 314 (426)
Q Consensus 277 ~~~~--~~gV~TQ~v~~~t~~k-----------~~~~~~~ni~lKiN~KlG 314 (426)
-.+. ..||-.=+|..+-+.. ...+-...++..++..+.
T Consensus 96 K~~ql~~lGvr~FailfDDi~~~~~~~~~~~~~~~~~~q~~l~n~v~~~l~ 146 (306)
T PF07555_consen 96 KFDQLYDLGVRSFAILFDDIDGDLWHCDKDDFNSLAQAQARLLNRVNKELI 146 (306)
T ss_dssp HHHHHHCTT--EEEEE-TS-SSC--TTTTTT-SCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCEEEEeecCCCCccccccccccchHHHHHHHHHHHHHHHHh
Confidence 6664 4799999999887762 223344566666665554
No 52
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.32 E-value=3.5e+02 Score=25.95 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=21.6
Q ss_pred CCceEEEEEeCCCCC-c-hhhHhhhhccccceeeeeecc
Q 037086 255 KQLQLLIIILPDDKG-S-YGRIKRVCETELGIVSQCCQP 291 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~-~-Y~~iK~~~~~~~gV~TQ~v~~ 291 (426)
..|.|+++...+... . |...|.-...+.||.+-.+..
T Consensus 30 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l 68 (285)
T PRK14191 30 KRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTL 68 (285)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 346666655544433 3 776666666667776665544
No 53
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=23.87 E-value=3.7e+02 Score=26.82 Aligned_cols=35 Identities=31% Similarity=0.331 Sum_probs=19.7
Q ss_pred CceEEEEEeCCCCCc--hhhHhhhhccccceeeeeec
Q 037086 256 QLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQ 290 (426)
Q Consensus 256 ~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~ 290 (426)
.|.|+++.+.+..+. |...|.-...+.||.+..+.
T Consensus 103 ~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~ 139 (364)
T PLN02616 103 VPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVR 139 (364)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEE
Confidence 455655555544333 66666555556666665554
No 54
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=23.53 E-value=1.3e+02 Score=22.72 Aligned_cols=15 Identities=27% Similarity=0.643 Sum_probs=12.8
Q ss_pred ecCCCceeeHHHHHHH
Q 037086 37 IDDNGTRMSVIQYFLE 52 (426)
Q Consensus 37 ~~~~g~~itv~~Yf~~ 52 (426)
..+||..+| .|||..
T Consensus 45 L~eDGTeVt-EeyF~t 59 (77)
T cd06535 45 LYEDGTEVT-EEYFPT 59 (77)
T ss_pred EecCCcEeh-HHHHhc
Confidence 578999998 999984
No 55
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=23.17 E-value=2e+02 Score=21.78 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHHHHHhcCCcCCCCCCccccCCCchHHHHHHHHHHHHHhhCCCCceEEEEEeCCC
Q 037086 202 PDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDD 267 (426)
Q Consensus 202 ~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~ 267 (426)
.+....++..+.+.+++.|+.+. +.. ....+...|+.+.. .+++|+++|-++.
T Consensus 11 ~~~~~~~a~~l~~~L~~~gi~v~------~d~-~~~~~~k~~~~a~~------~g~p~~iiiG~~e 63 (94)
T PF03129_consen 11 DEEIIEYAQELANKLRKAGIRVE------LDD-SDKSLGKQIKYADK------LGIPFIIIIGEKE 63 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEE------EES-SSSTHHHHHHHHHH------TTESEEEEEEHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCEEE------EEC-CCCchhHHHHHHhh------cCCeEEEEECchh
Confidence 44678899999999999996542 111 34567777776665 4889999997644
No 56
>PHA02969 hypothetical protein; Provisional
Probab=22.34 E-value=89 Score=24.43 Aligned_cols=53 Identities=23% Similarity=0.255 Sum_probs=31.6
Q ss_pred EEEEeCCCCCc-hhhHhhhhccccceeeeeecc--cccc---cCCHhHHHHHHHhhhccc
Q 037086 260 LIIILPDDKGS-YGRIKRVCETELGIVSQCCQP--KQAS---KLSMQYFENVALKINVKV 313 (426)
Q Consensus 260 v~~vl~~~~~~-Y~~iK~~~~~~~gV~TQ~v~~--~t~~---k~~~~~~~ni~lKiN~Kl 313 (426)
|++++.+-.++ |..|| ..+..+=|.+-.+.. +++. +.+.|....++..||.++
T Consensus 6 v~F~l~nYSddDY~~iK-sid~h~iIisK~~~~s~~~isGYIelK~~~~~Si~~nIN~~~ 64 (111)
T PHA02969 6 IHFILNDYSDDDYKKIK-SIDCHHIIIDKESDDSHKIISGYIELKDGALCSIIENINPNI 64 (111)
T ss_pred EEEEeccCCchhHHhhh-hcceeEEEEEeecCCcccceeEEEEeccccchHHHHhhChHH
Confidence 55666666666 99999 457777777777766 3332 223444444455555543
No 57
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.19 E-value=3.9e+02 Score=25.54 Aligned_cols=36 Identities=31% Similarity=0.334 Sum_probs=18.0
Q ss_pred CceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecc
Q 037086 256 QLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQP 291 (426)
Q Consensus 256 ~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~ 291 (426)
.|.|+++...+...+ |...|.-...+.||.+..+..
T Consensus 26 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l 63 (279)
T PRK14178 26 YPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIEL 63 (279)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 455555444443332 655555555556665555544
No 58
>PRK11617 endonuclease V; Provisional
Probab=22.14 E-value=4.5e+02 Score=24.27 Aligned_cols=42 Identities=33% Similarity=0.441 Sum_probs=23.5
Q ss_pred CCeEEeeecccCCCCCCCCCCeEEEEEEeeCCCCccceeeEEeecC
Q 037086 334 RPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQA 379 (426)
Q Consensus 334 ~~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~~~~y~~~~~~Q~ 379 (426)
...+|-|+||+....+ .-.++++| -+||++..-....+...+
T Consensus 28 ~~~~VaGvDvsy~~~~---~~~~aa~V-vl~~~~~~~v~~~~~~~~ 69 (224)
T PRK11617 28 PPRLIAGADVGFEQGG---EVTRAAIV-VLKYPSLELVEYQVARIA 69 (224)
T ss_pred CccEEEEEEEEEcCCC---ceEEEEEE-EEECCCCcEEEEEEEEec
Confidence 4579999999995431 22334433 356666554444443333
No 59
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.43 E-value=3.7e+02 Score=25.88 Aligned_cols=21 Identities=33% Similarity=0.321 Sum_probs=10.0
Q ss_pred hhhHhhhhccccceeeeeecc
Q 037086 271 YGRIKRVCETELGIVSQCCQP 291 (426)
Q Consensus 271 Y~~iK~~~~~~~gV~TQ~v~~ 291 (426)
|...|.....+.||.+..+..
T Consensus 46 Yv~~k~k~~~~~Gi~~~~~~l 66 (287)
T PRK14173 46 YVRLKDRQAKALGLRSQVEVL 66 (287)
T ss_pred HHHHHHHHHHHcCCEEEEEEC
Confidence 555444444445555544433
Done!