Query 037086
Match_columns 426
No_of_seqs 119 out of 998
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 14:15:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 1.5E-82 5.3E-87 685.1 36.5 402 2-426 261-669 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 2.1E-75 7.2E-80 630.0 28.5 397 1-426 352-839 (1046)
3 1yvu_A Hypothetical protein AQ 100.0 1.2E-52 4.1E-57 441.4 13.1 362 9-426 182-569 (706)
4 3ho1_A Argonaute; argonaute, p 100.0 1.5E-47 5E-52 396.3 17.1 345 5-426 189-544 (685)
5 2yha_A Post-transcriptional ge 100.0 5.8E-46 2E-50 367.8 18.8 225 177-426 2-242 (388)
6 2yhb_A QDE-2, post-transcripti 100.0 1E-44 3.6E-49 363.4 18.6 225 177-426 2-242 (437)
7 1u04_A Argonaute, hypothetical 100.0 2.3E-43 8E-48 370.8 13.4 377 4-426 173-627 (771)
8 4g0o_A Protein argonaute 5; MI 100.0 2.7E-30 9.1E-35 219.8 11.7 138 179-320 2-139 (139)
9 4g0x_A Protein argonaute 1; MI 100.0 3.2E-30 1.1E-34 221.6 11.8 142 179-320 2-147 (147)
10 3luc_A Protein argonaute-2; MI 100.0 1.8E-28 6.3E-33 208.3 10.9 135 178-317 1-138 (138)
11 4g0m_A Protein argonaute 2; MI 99.9 2.6E-28 8.8E-33 210.4 9.0 142 179-320 2-150 (150)
12 1vyn_A Argonaute2; nucleic aci 99.9 2.6E-27 8.7E-32 202.1 7.2 106 1-108 33-142 (143)
13 2w42_A PIWI, putative uncharac 99.9 3.9E-27 1.3E-31 236.0 6.0 228 151-426 5-254 (427)
14 2xfm_A MIWI, PIWI-like protein 99.9 4E-25 1.4E-29 190.0 5.3 110 2-120 26-150 (150)
15 3qir_A PIWI-like protein 2; st 99.9 1.6E-24 5.3E-29 184.6 7.2 108 2-118 25-148 (148)
16 3mj0_A Protein argonaute-2; ar 99.9 6.1E-24 2.1E-28 175.9 5.7 89 1-91 31-123 (124)
17 3o7v_X PIWI-like protein 1; PI 99.9 3.4E-22 1.1E-26 164.9 7.5 90 2-100 25-123 (124)
18 1r6z_P Chimera of maltose-bind 99.8 9E-20 3.1E-24 188.1 5.4 93 1-95 413-509 (509)
19 2qvw_A GLP_546_48378_50642; di 99.0 2.2E-10 7.6E-15 121.5 5.6 82 2-86 153-253 (756)
20 3dvo_A Sgrair restriction enzy 41.6 74 0.0025 28.8 7.2 51 172-224 122-182 (338)
21 3p2o_A Bifunctional protein fo 28.5 1.6E+02 0.0056 26.8 7.7 66 254-321 31-100 (285)
22 2l69_A Rossmann 2X3 fold prote 27.9 81 0.0028 23.5 4.4 60 191-268 3-62 (134)
23 2c2x_A Methylenetetrahydrofola 26.8 1.4E+02 0.0048 27.2 6.9 56 254-311 30-87 (281)
24 2l7y_A Putative endo-beta-N-ac 25.2 1.2E+02 0.004 23.0 5.0 32 5-36 27-66 (98)
25 4b4u_A Bifunctional protein fo 25.1 1.4E+02 0.005 27.5 6.6 37 255-291 52-90 (303)
26 3nqi_A Putative lipoprotein; s 22.7 39 0.0013 30.2 2.2 21 405-425 196-217 (246)
27 3c65_A Uvrabc system protein C 21.2 3.1E+02 0.011 24.1 7.8 73 335-425 14-88 (226)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=1.5e-82 Score=685.12 Aligned_cols=402 Identities=37% Similarity=0.642 Sum_probs=351.9
Q ss_pred hhhccCCEEEEeecC-CceeEEEecccCCCCCCeEEe--cCCCc--eeeHHHHHHHhcCccccCCCCceEecCCCCCccc
Q 037086 2 EEALKGIKVVLTHVE-YNRSYKITGISSQPMSQLMFI--DDNGT--RMSVIQYFLEKSNIALQFTSLPAVLAGSEARPIY 76 (426)
Q Consensus 2 ~~~l~gl~v~~~~~~-~~~~~~I~~i~~~~a~~~~F~--~~~g~--~itv~~Yf~~~y~i~l~~p~~Plv~~~~~~k~~~ 76 (426)
+++|+|++|.++|.+ ++|+|+|.||++.++.+.+|. +++|+ ++||+|||+++||++|+||+||||++|++++.+|
T Consensus 261 ~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g~~~~~~y 340 (861)
T 4f3t_A 261 TKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTY 340 (861)
T ss_dssp HHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEESCTTTTEE
T ss_pred HHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEEecCCCCCcc
Confidence 578999999999965 468999999999889999993 35564 7999999999999999999999999998888999
Q ss_pred ccccceEecCCCccCCCCCHHHHHHHHHHhcCChhHHHHHHHHHHHHcCCCCCcccccccCeeecCceeEeeeeecCCCe
Q 037086 77 LPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPM 156 (426)
Q Consensus 77 ~P~El~~i~~~Q~~~~~l~~~~~~~~i~~~~~~P~~r~~~i~~~~~~l~~~~~~~l~~~~Gi~i~~~~~~v~~rvL~~P~ 156 (426)
||||||.|+|||++..+|+++++++|++.|+..|.+|.+.|.++++.++++.++.|+ +||++|+++|++|+||+||||+
T Consensus 341 lP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~-~fGi~i~~~~~~v~gRvL~~P~ 419 (861)
T 4f3t_A 341 LPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVR-EFGIMVKDEMTDVTGRVLQPPS 419 (861)
T ss_dssp EEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHH-HTTCEECSSCEEEEEEECCCCC
T ss_pred ccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCchHHH-HCCCEEeCCeeEEEEEEecCce
Confidence 999999999999999999999999999999999999999999999999888889999 9999999999999999999999
Q ss_pred eeeccCCcceeecCCCccccccccccccCcccceeEEEEeCCC--CCCChHHHHHHHHHHHHHhcCCcCCCCCCccccCC
Q 037086 157 LKYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTD--LDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSS 234 (426)
Q Consensus 157 i~~~~~~~~~~~~p~~g~W~~~~~~f~~~~~~~~w~vi~~~~~--~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~ 234 (426)
|.|+++++. .+.|.+|+|++++.+|++|+++.+|++++|++. .+.+.++.|++.|.+.|+.+||++..+|.+.....
T Consensus 420 I~y~~~~~~-~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~ 498 (861)
T 4f3t_A 420 ILYGGRNKA-IATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQ 498 (861)
T ss_dssp EECCSSSCC-EECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEECC
T ss_pred EEecCCccc-ccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCCCeEEEecC
Confidence 999975332 356789999999999999999999999988643 24567899999999999999999986554322122
Q ss_pred CchHHHHHHHHHHHHHhhCCCCceEEEEEeCCCCCchhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcccC
Q 037086 235 NPNQIEKALVDVHNRTTQQGKQLQLLIIILPDDKGSYGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVG 314 (426)
Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~~~~Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~KlG 314 (426)
+.+.++..++.+.+.. .+++|||||+|++.+.|+.||+++|.+.||+||||..+++.|.++|++.||+||||+|||
T Consensus 499 ~~~~~~~~~~~l~~~~----~~~qlvl~Ilp~~~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlG 574 (861)
T 4f3t_A 499 GADSVEPMFRHLKNTY----AGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLG 574 (861)
T ss_dssp SSSSHHHHHHHHHHHS----TTCCEEEEEESSSCTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHhhc----CCCcEEEEEeCCCccHHHHHHHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcC
Confidence 3456677776665542 479999999996543399999999999999999999999999899999999999999999
Q ss_pred ceeeeeccccccCCCccCCCCeEEeeecccCCCCCCCCCCeEEEEEEeeCCCCccceeeEEeecCCchhhhhhhhhccCC
Q 037086 315 GRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQD 394 (426)
Q Consensus 315 G~n~~l~~~~~~~~p~l~~~~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~~~~y~~~~~~Q~~~~e~i~~~~~~~~~ 394 (426)
|+||.+.+. ..|.+...+|||||+||+||++++...||+||||||+| ..+++|.+.+++|.+++|+|+++
T Consensus 575 G~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~E~i~~l------ 644 (861)
T 4f3t_A 575 GVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL------ 644 (861)
T ss_dssp CBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEESTTCCSCTTH------
T ss_pred Ccceecccc---ccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcC-CCcceEEEEEEEcCCCccHHHHH------
Confidence 999998653 23444457999999999999988667899999999999 89999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHHcCCCCCceEeC
Q 037086 395 PQRGLVHGGMIRELLIAFNRSTNRKPESIIFY 426 (426)
Q Consensus 395 ~~~~~~~~~~~~~~l~~f~~~n~~~P~~IiiY 426 (426)
++|+.++|..|++.|+.+|+|||||
T Consensus 645 -------~~~~~~~L~~~~~~~~~~P~~Iiiy 669 (861)
T 4f3t_A 645 -------AAMVRELLIQFYKSTRFKPTRIIFY 669 (861)
T ss_dssp -------HHHHHHHHHHHHHHHSCCCSEEEEE
T ss_pred -------HHHHHHHHHHHHHHhCCCCceEEEE
Confidence 9999999999999999999999998
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=2.1e-75 Score=630.05 Aligned_cols=397 Identities=22% Similarity=0.351 Sum_probs=315.3
Q ss_pred ChhhccCCEEEEeecC-------------CceeEEEecccCCCCCCeEEecCCC--------------ceeeHHHHHHHh
Q 037086 1 VEEALKGIKVVLTHVE-------------YNRSYKITGISSQPMSQLMFIDDNG--------------TRMSVIQYFLEK 53 (426)
Q Consensus 1 ~~~~l~gl~v~~~~~~-------------~~~~~~I~~i~~~~a~~~~F~~~~g--------------~~itv~~Yf~~~ 53 (426)
++++|+||+|+++|.+ ..+.++|.||+..+|.+.+|..++| +.+||+|||+++
T Consensus 352 l~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~~~~~~~~~~g~~~~~iTVadYFk~k 431 (1046)
T 4f1n_A 352 ISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESSLKKNSAPKPNEKPININTIDYFKRK 431 (1046)
T ss_dssp HHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC-----------------------CHHHHHHHH
T ss_pred HHHHhCCCEEEEEecCccccccccccccccccceEEeeccCCCCCceEEeccCCcccccccccCCcCceEEEHHHHHHHH
Confidence 3578999999999975 1247999999998999999932222 579999999999
Q ss_pred cCccccCCCCceEecCCCCCcccccccceEecCCCccCCCCCHHHHHHHHHHhcCChhHHHHHHHHHH-H----HcCCCC
Q 037086 54 SNIALQFTSLPAVLAGSEARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRMMT-R----ANAYND 128 (426)
Q Consensus 54 y~i~l~~p~~Plv~~~~~~k~~~~P~El~~i~~~Q~~~~~l~~~~~~~~i~~~~~~P~~r~~~i~~~~-~----~l~~~~ 128 (426)
||++|+||++|||++|++ .+|||+|+|.|+|||+++++|++ +++||++|+..|.+|++.|.+.. . .+..+.
T Consensus 432 Yni~LkyP~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MIKfAa~rP~eR~~~I~~~~~~~~~~~l~~~~ 507 (1046)
T 4f1n_A 432 YDITLKYPDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYIDFSAIRPTEKFDLISRLSMPAIKRGLTDSE 507 (1046)
T ss_dssp SCCCCSCTTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred hCcccCCCCCCEEEECCC--CcccccceEEecCCccccccccc--HHHHHHHHccCcHHHHHHHHHHHHHhhhccccccc
Confidence 999999999999999974 37999999999999999999987 47999999999999999999864 2 244456
Q ss_pred CcccccccCeeecCceeEeeeeecCCCeeeeccCCcc-------eeecCCCccccccccccccCcc-cceeEEEEeC-CC
Q 037086 129 DTLVNREFGIQVADVLTLVDARILPAPMLKYHESGRE-------ASVNPGFGQWNMINKKMFNGGR-VEVWTCVNFS-TD 199 (426)
Q Consensus 129 ~~~l~~~~Gi~i~~~~~~v~~rvL~~P~i~~~~~~~~-------~~~~p~~g~W~~~~~~f~~~~~-~~~w~vi~~~-~~ 199 (426)
++.|. +|| +|+.+|++|+|||||||.|.|+++... ....|.+|+|||++++|++|+. +.+|.++++. +.
T Consensus 508 ~~~l~-~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G~Wnm~~~kf~~~~~~~~~~~~v~~~~~~ 585 (1046)
T 4f1n_A 508 KEESS-APH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGNWNMKGHQFISTPAKQVNLRAIFINNAN 585 (1046)
T ss_dssp ----------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTTBCCCTTCCCSBCCSSCEEEEEEEEECSS
T ss_pred cHhHH-hcC-CccCceeeEEEEEcCCCeEeecCCcccccccccccccCccCCcccCCCCEEecCCcccceEEEEEEcCCC
Confidence 78899 999 999999999999999999999874211 0134678999999999999874 5677666543 21
Q ss_pred CC-----CChHHHHHHHHHHHHHhcCCcCCCC--CCcc---------ccCC--------------------------Cch
Q 037086 200 LD-----PDVPFQFCQGLVDVCNSKGMVFNPR--PVIP---------ISSS--------------------------NPN 237 (426)
Q Consensus 200 ~~-----~~~~~~f~~~l~~~~~~~G~~~~~~--~~~~---------~~~~--------------------------~~~ 237 (426)
.. ..+++.|++.|.+.|+++||.+..+ |.+. +... ...
T Consensus 586 ~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1046)
T 4f1n_A 586 TAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRGGRGGRGSRGGRGGRGAPSGPPTFETS 665 (1046)
T ss_dssp SCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC----------------------------CCCBCC
T ss_pred cccccccHHHHHHHHHHHHHHHHhcCCccCCCCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence 11 2478899999999999999999753 3210 1000 002
Q ss_pred HHHHHHHHHHHHHhhCCCCceEEEEEeCCC-CCc-hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcccCc
Q 037086 238 QIEKALVDVHNRTTQQGKQLQLLIIILPDD-KGS-YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVGG 315 (426)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~-~~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~KlGG 315 (426)
+.+..|..+++.+ ..++|||||+|++ +.+ |+.||++||++.||+||||..+++.|.++||++||+||||+||||
T Consensus 666 ~~~~~l~~~~~~~----~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~~~t~~k~~~q~~~NI~lKiN~KLGG 741 (1046)
T 4f1n_A 666 PGEISLLNLLENI----PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVMKMNLKLLG 741 (1046)
T ss_dssp TTHHHHHHHHHTC----CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEEHHHHTTCCHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhc----CCCCEEEEEecCCCCchHHHHHHHHhhccCCcccEEEehhhhccccHHHHHHHHHHHHHhcCC
Confidence 3455666666643 4789999999998 556 999999999999999999999999999999999999999999999
Q ss_pred eeeeeccccccCCCccC----CCCeEEeeecccCCCCCCCCCCeEEEEEEeeCCCCccceeeEEeecCC-chhhhhhhhh
Q 037086 316 RNTVLVDAVQKRIPLVT----DRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAR-HEEIIQDLYK 390 (426)
Q Consensus 316 ~n~~l~~~~~~~~p~l~----~~~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~~~~y~~~~~~Q~~-~~e~i~~~~~ 390 (426)
+||.|+.+ .++++. ..+|||||+||+|++++ ..+||||||||+| ..+++|.+.+++|.+ ++|+|+++
T Consensus 742 ~n~~l~~~---~~~~l~~~~~~~ptMiiG~DVtH~p~~--~~~SiaavVaS~d-~~~t~y~s~~~~Q~~~~~Eii~~L-- 813 (1046)
T 4f1n_A 742 SNHSLSIE---NNKLLIDKESNLPILVLGSDVTHYPEK--DQNSIASLVGSYD-DKFTQFPGDYMLQDGPGEEIITNV-- 813 (1046)
T ss_dssp BCCEECTT---GGGGGEETTTTEECEEEEEEEECCSST--TCEEEEEEEECCS-SSCCCCCEEEEEEEEETCCSCTTG--
T ss_pred eeeecccc---ccccccccccCCceEEEeeeeecCCCC--CCCeeeEEEEEEC-CCcCeEeeEEEEecCCCccHHHHH--
Confidence 99999865 234332 34799999999995433 3569999999999 899999999999998 99999999
Q ss_pred ccCCCCCCcchhhHHHHHHHHHHHH-cCCCCCceEeC
Q 037086 391 SIQDPQRGLVHGGMIRELLIAFNRS-TNRKPESIIFY 426 (426)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~f~~~-n~~~P~~IiiY 426 (426)
++||.++|+.|++. ||.+|+|||||
T Consensus 814 -----------~~~~~~~L~~y~~~n~~~lP~~IIiY 839 (1046)
T 4f1n_A 814 -----------GSLMLNRLKIYQKHNNGKLPTKIMYF 839 (1046)
T ss_dssp -----------GGGHHHHHHHHHHTTTTCCCSSEEEE
T ss_pred -----------HHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 99999999999998 78999999998
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=1.2e-52 Score=441.38 Aligned_cols=362 Identities=13% Similarity=0.128 Sum_probs=266.2
Q ss_pred EEEEeecCCceeE--EEecc-cCCCCCCeEEecCCCceeeHHHHHHHhcCcc--------ccCCCCceEecCCCCC-ccc
Q 037086 9 KVVLTHVEYNRSY--KITGI-SSQPMSQLMFIDDNGTRMSVIQYFLEKSNIA--------LQFTSLPAVLAGSEAR-PIY 76 (426)
Q Consensus 9 ~v~~~~~~~~~~~--~I~~i-~~~~a~~~~F~~~~g~~itv~~Yf~~~y~i~--------l~~p~~Plv~~~~~~k-~~~ 76 (426)
.+..+| ++++| +|+|| +|+..+.++|. +|..+| ||+++|++. .+.+.+|++..+.+.. ..+
T Consensus 182 ~~~~~y--~n~ty~~riddi~~~~~~P~~~f~--~g~~iS---Yyk~~~~~~q~ll~~r~~~~~~~~~~v~~~~~~p~~l 254 (706)
T 1yvu_A 182 RIRVKP--IGIDFVGRVQDVFKAKEKGEEFFR--LCMERS---THKSSKKAWEELLKNRELREKAFLVVLEKGYTYPATI 254 (706)
T ss_dssp TCEEEE--TTCCCCEEEEEEEESTTSCHHHHH--HHHHTC---SSHHHHHHHHHHHHCHHHHHHCEEEEETTSCEEEGGG
T ss_pred hHHhhc--ccceeccccCcccccCCCcceEec--CCCCcc---eEecccCcchhhhhccccccCCceEEeccCCCCCcee
Confidence 456677 35677 99998 99999999994 366788 999988776 4456666666543111 233
Q ss_pred ccccceEecCCCccCCCCCHHHHHHHHHHhcCChhHHHHHHHHHHHHcCCCCCcccccccCeeecCceeEeeeeecCCCe
Q 037086 77 LPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAPM 156 (426)
Q Consensus 77 ~P~El~~i~~~Q~~~~~l~~~~~~~~i~~~~~~P~~r~~~i~~~~~~l~~~~~~~l~~~~Gi~i~~~~~~v~~rvL~~P~ 156 (426)
++| +|.++ +|+++++++|+++|+.+|++|++.|.++++.+ ++.|+ .||++|+++|+.|+||+||+|.
T Consensus 255 L~p-lc~~t-------~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L~-~fGi~i~~~~~~v~gRVLp~P~ 321 (706)
T 1yvu_A 255 LKP-VLTYE-------NLEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKALR-DYGWYISPEEERAKGKLNFKDT 321 (706)
T ss_dssp EEE-CCCCC-------------HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHHH-TTTEEECSSCEECCEECCCCCC
T ss_pred ecc-ccccC-------CCCHHHHHHHHHHHccCHHHHHHHHHHHHHHH----HHHHH-HcCCEECCceeecccEEcCCce
Confidence 333 66555 89999999999999999999999999998764 47788 9999999999999999999999
Q ss_pred eeeccCCcceeecCCCccccccccccccCcccce---eEEEEeCCCCCCChHHHHHHHHHHHHHhcCCcCCCCCCccccC
Q 037086 157 LKYHESGREASVNPGFGQWNMINKKMFNGGRVEV---WTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISS 233 (426)
Q Consensus 157 i~~~~~~~~~~~~p~~g~W~~~~~~f~~~~~~~~---w~vi~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~ 233 (426)
|.++.+.......+.+|.|+++ .+|+.++.+.. |.++ +.. .+ ..++.|++.|.+.|+.+||+++.++......
T Consensus 322 i~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~lW~~i-~~~-~~-~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~ 397 (706)
T 1yvu_A 322 VLDAKGKNTKVITNLRKFLELC-RPFVKKDVLSVEIISVSV-YKK-LE-WRKEEFLKELINFLKNKGIKLKIKGKSLILA 397 (706)
T ss_dssp EECSSCCEECCSSCCHHHHHHC-CCCCSCSEEEEEEEEEEC--------CHHHHHHHHHHHHHHTTTCEEEEEEEEEEEC
T ss_pred eecCCCCcceeccCCccccccc-CceecccccccceEEEEE-ecc-hh-HHHHHHHHHHHHHHHHcCceecCCccccccc
Confidence 9965432111222335667765 45778888888 8544 332 22 3799999999999999999997653221222
Q ss_pred CCchHHHHHHHHHHHHHhhCCCCceEEEEEeCCC-------CCc-hhhHhhhhccccceeeeeecccccccC-CHhHHHH
Q 037086 234 SNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDD-------KGS-YGRIKRVCETELGIVSQCCQPKQASKL-SMQYFEN 304 (426)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~-------~~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~-~~~~~~n 304 (426)
+.+++.++.+.+.+. ...+++++|||+|++ +.+ |+.||+.++ +.||+||||..+++.+. ..+++.|
T Consensus 398 ---~~~~~~~~~l~~~~~-~~~~~qlvlvIlp~~~~~~~~~~~~~Y~~IK~~~~-~~GI~TQcv~~~tl~~~~~~q~~~N 472 (706)
T 1yvu_A 398 ---QTREEAKEKLIPVIN-KIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKNENLKFVLLN 472 (706)
T ss_dssp ---SSTTHHHHHHHHHHT-TTSSCSEEEEEEC----------CHHHHHHHHHHH-HTTCCCEEEEHHHHHHSCHHHHHHH
T ss_pred ---hhHHHHHHHHHHHhc-ccCCCcEEEEEECCccccccccCccHHHHHHHHHh-cCCCceEEEehhhccccchHHHHHH
Confidence 234444544443321 125799999999997 667 999999865 89999999999998874 5799999
Q ss_pred HHHhhhcccCceeeeeccccccCCCccCCCCeEEeeecccCCCCCCCCCCeEEEEEEeeCCCC--ccceeeEEeecCCch
Q 037086 305 VALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPE--VTKYRGLVSAQARHE 382 (426)
Q Consensus 305 i~lKiN~KlGG~n~~l~~~~~~~~p~l~~~~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~--~~~y~~~~~~Q~~~~ 382 (426)
|++|||+||||+||.|+.+ ...+|||||+||+||+.+. ..||++|+|||+| .. .++|.+....|. ++
T Consensus 473 I~lkiN~KLGG~nw~L~~~--------~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas~d-~~g~~~~~~~~~~~q~-~~ 541 (706)
T 1yvu_A 473 VAEQVLAKTGNIPYKLKEI--------EGKVDAFVGIDISRITRDG-KTVNAVAFTKIFN-SKGELVRYYLTSYPAF-GE 541 (706)
T ss_dssp HHHHHHHHTTCCSCEESCC--------TTCCSEEEEECEEECCCSS-SCCCEEEEEEEEC-TTSCEEEEEEEEECSC-TT
T ss_pred HHHHHHHHhCCeeeeeccC--------CCCceEEEEEEEeccCCCC-CCceEEEEEEEEc-CCCCEEEEEEEecccc-cc
Confidence 9999999999999999753 1268999999999997543 3699999999999 66 567777765554 78
Q ss_pred hhhhhhhhccCCCCCCcchhhHHHHHHHHHHHHcCCCCCceEeC
Q 037086 383 EIIQDLYKSIQDPQRGLVHGGMIRELLIAFNRSTNRKPESIIFY 426 (426)
Q Consensus 383 e~i~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~n~~~P~~IiiY 426 (426)
|+++++ +..+|+.|++.++.+|+|||||
T Consensus 542 ei~~~l----------------~~~~l~~~~~~~~~~P~rIIiy 569 (706)
T 1yvu_A 542 KLTEKA----------------IGDVFSLLEKLGFKKGSKIVVH 569 (706)
T ss_dssp HHHHHH----------------HHHHHHHHHHTTCCTTCEEEEE
T ss_pred hHHHHH----------------HHHHHHHHHHhcCCCCcEEEEE
Confidence 887655 5566777888889999999998
No 4
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=1.5e-47 Score=396.27 Aligned_cols=345 Identities=15% Similarity=0.157 Sum_probs=263.1
Q ss_pred ccCCEEEEeecCCceeEEEecccCCCCCCeEEecCCCceeeHHHHHHHhcCccccCCCCceEecCCC----CC-----cc
Q 037086 5 LKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSE----AR-----PI 75 (426)
Q Consensus 5 l~gl~v~~~~~~~~~~~~I~~i~~~~a~~~~F~~~~g~~itv~~Yf~~~y~i~l~~p~~Plv~~~~~----~k-----~~ 75 (426)
|. ..|.++| +.++|.|.+|+ +.+|++.|... .+|++|||.++|.+ +.-++|+|....+ .+ ..
T Consensus 189 ~~-~~v~~~y--~~~~~~~~~~~-~~~p~~~~l~~---~~s~~~y~~~k~~~--~~~~~~~vv~~~~~~~~~~~i~~~~~ 259 (685)
T 3ho1_A 189 LP-KRVRNAY--DRRTWELLRLG-EEDPKELPLPG---GLSLLDYHASKGRL--QGREGGRVAWVADPKDPRKPIPHLTG 259 (685)
T ss_dssp CC-SEEEESS--SCCEECCCEEE-CCCTTCC---------CSTTTTTTTSTT--TTSCCCSEEEECSCC---CCEEEETT
T ss_pred cc-HHHhhhc--ccceEEEeecc-cCCchheecCC---CccHHHHHhhcccc--cccCCceEEEEeccccCCCcceeeee
Confidence 44 6899999 47899999999 57899998432 69999999999887 8889998865322 11 46
Q ss_pred cccccceEecCCCccCCCCCHHHHHHHHHHhcCChhHHHHHHHHHHHHcCCCCCcccccccCeeecCceeEeeeeecCCC
Q 037086 76 YLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRMMTRANAYNDDTLVNREFGIQVADVLTLVDARILPAP 155 (426)
Q Consensus 76 ~~P~El~~i~~~Q~~~~~l~~~~~~~~i~~~~~~P~~r~~~i~~~~~~l~~~~~~~l~~~~Gi~i~~~~~~v~~rvL~~P 155 (426)
++.|||| ++ .|++.+.. .++...|++|++.+.++++.+ ++ .||+. +.+|++++||+||||
T Consensus 260 ~l~p~l~-m~-------~l~~~~~~---~~trlsP~~R~~~l~~~~~~i-------~~-~~Gl~-~~~~i~v~gRvLppp 319 (685)
T 3ho1_A 260 LLVPVLT-LE-------DLHEEEGS---LALSLPWEERRRRTREIASWI-------GR-RLGLG-TPEAVRAQAYRLSIP 319 (685)
T ss_dssp SEEEECC-TT-------TTSSCSSC---CCCCCCHHHHHHHHHHHHHHH-------HH-TTCSC-CCEEEEEEEEECCCC
T ss_pred eechHhH-HH-------HHhhhhhh---ccccCCHHHHHHHHHHHHHHH-------HH-hcCCC-CCCcceEEEEEcCHH
Confidence 8899999 66 45554433 688999999999999998764 56 89998 999999999999999
Q ss_pred eeeeccCCcceeecCCCccccccccccccCcccceeEEEEeCCCCCCChHHHHHHHHHHHHHhcCCcCCCCCCccccCCC
Q 037086 156 MLKYHESGREASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSN 235 (426)
Q Consensus 156 ~i~~~~~~~~~~~~p~~g~W~~~~~~f~~~~~~~~w~vi~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~ 235 (426)
+| +++. . + .+.|.+.+.+|+.++.. .|+++.+.+. ...++.|++.|.+.|+.+||++..+....... +
T Consensus 320 ~I-~g~~--~--~---~~~~d~~~~~~~~~~~~-~~ail~l~~~--~~~~~~f~~~L~~va~~~G~~i~~~~~~~~~~-d 387 (685)
T 3ho1_A 320 KL-MGRR--A--V---SKPADALRVGFYRAQET-ALALLRLDGA--QGWPEFLRRALLRAFGASGASLRLHTLHAHPS-Q 387 (685)
T ss_dssp CE-ESSS--B--C---SSGGGHHHHCCSSCCCE-EEEEEECSSC--CSCCHHHHHHHHHHHHSSSSCEEEEECCCCGG-G
T ss_pred Hh-cCCC--C--c---CCchhhccCcceeccCc-eEEEEeccCc--hHHHHHHHHHHHHHHHhCCcEeccceeecCCC-c
Confidence 99 7752 1 1 33555666778887765 7999988652 46788999999999999999997532121211 1
Q ss_pred chHHHHHHHHHHHHHhhCCCCceEEEEEeCCCCCc-hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcccC
Q 037086 236 PNQIEKALVDVHNRTTQQGKQLQLLIIILPDDKGS-YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVG 314 (426)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~~~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~KlG 314 (426)
...+...++++.+ .++++||||+|++.++ |+.||+.+ .+.||+||||. +++.+...++++||++|||+|||
T Consensus 388 ~~~~~~~l~~~~~------~~~qlvvvIlp~~~~~~y~~IKk~~-~~~GIpTQcV~-~tl~k~~~~ia~NIaLkINaKLG 459 (685)
T 3ho1_A 388 GLAFREALRKAKE------EGVQAVLVLTPPMAWEDRNRLKALL-LREGLPSQILN-VPLREEERHRWENALLGLLAKAG 459 (685)
T ss_dssp THHHHHHHHHHHH------TTCCEEEEEESCCCHHHHHHHHHHH-HHTTCCEEEEE-SSCCTTCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhh------cCCCEEEEEECCCCccHHHHHHHHH-hcCCCccEEEe-cccccccHhHHHHHHHHHHHHhC
Confidence 2245556655544 4799999999999888 99999886 79999999999 78877788999999999999999
Q ss_pred ceeeeeccccccCCCccCCCCeEEeeecccCCCCCCCCCCeEEEEEEeeCCCCcccee-eEEeecCCchhhhhhhhhccC
Q 037086 315 GRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYR-GLVSAQARHEEIIQDLYKSIQ 393 (426)
Q Consensus 315 G~n~~l~~~~~~~~p~l~~~~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~~~~y~-~~~~~Q~~~~e~i~~~~~~~~ 393 (426)
|+||.|+. |. .++||||+||+|++. .+++|++++++ .+.+.+. +....|...++.++++
T Consensus 460 G~pW~L~~------P~---~~tmiIGiDVsH~~~-----~~~~~~aav~~-~dg~~~~~~~~~~Q~~e~l~~~~L----- 519 (685)
T 3ho1_A 460 LQVVALSG------AY---PAELAVGFDAGGRES-----FRFGGAACAVG-GDGGHLLWTLPEAQAGERIPQEVV----- 519 (685)
T ss_dssp CCCCEECS------CC---SCSEEEEEEEEETTE-----EEEEEEEEEEC-C--CCCEEECCCCCCSCCCHHHHH-----
T ss_pred CeeEEecC------CC---CCeEEEEEEEEcCCC-----CccceEEEEEE-CCCCEEEeEEEEccCCcEecHHHH-----
Confidence 99999975 32 689999999999873 35666555555 4433333 2344555434445677
Q ss_pred CCCCCcchhhHHHHHHHHHHHHcCCCCCceEeC
Q 037086 394 DPQRGLVHGGMIRELLIAFNRSTNRKPESIIFY 426 (426)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~f~~~n~~~P~~IiiY 426 (426)
.+++.++|..|++.||.+|+|||||
T Consensus 520 --------~~~l~eaL~~Y~k~ng~lP~RIIIy 544 (685)
T 3ho1_A 520 --------WDLLEETLWAFRRKAGRLPSRVLLL 544 (685)
T ss_dssp --------HHHHHHHHHHHHHHHSSCCSEEEEE
T ss_pred --------HHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 9999999999999999999999998
No 5
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=5.8e-46 Score=367.83 Aligned_cols=225 Identities=24% Similarity=0.437 Sum_probs=191.3
Q ss_pred cccccccc-CcccceeEEEEeCCCCCCChHHHHHHHHHHHHHhcCCcCCCCCC-c--cccCCCchHHHHHHHHHHHHHhh
Q 037086 177 MINKKMFN-GGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPV-I--PISSSNPNQIEKALVDVHNRTTQ 252 (426)
Q Consensus 177 ~~~~~f~~-~~~~~~w~vi~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~~ 252 (426)
+++.+|++ ++++++|++++++++.+...++.|++.|.+.|+.+||.+..+.. . .........+ .++++...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~--- 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELM--- 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHH---
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHh--HHHHhhcc---
Confidence 46788999 78999999999975557788999999999999999999987531 1 1122222222 33444322
Q ss_pred CCCCceEEEEEeCCCCCc-hhhHhhhhccccceeeeeecccccccCCHh--HHHHHHHhhhcccCceeeeeccccccCCC
Q 037086 253 QGKQLQLLIIILPDDKGS-YGRIKRVCETELGIVSQCCQPKQASKLSMQ--YFENVALKINVKVGGRNTVLVDAVQKRIP 329 (426)
Q Consensus 253 ~~~~~~lv~~vl~~~~~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~--~~~ni~lKiN~KlGG~n~~l~~~~~~~~p 329 (426)
.+++|||||+|+++.+ |+.||+++|.+.||+||||..+++.+.+++ |++||+||||+||||+||.|+.+ +|
T Consensus 77 --~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~----~~ 150 (388)
T 2yha_A 77 --SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IP 150 (388)
T ss_dssp --HTCSEEEEEESSSCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSC----CH
T ss_pred --CCCeEEEEEECCCChhHHHHHHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceecccc----cc
Confidence 3799999999998877 999999999999999999999999988888 99999999999999999999864 55
Q ss_pred ccCCCCeEEeeecccCCC---CC--CCCCCeEEEEEEeeCCCCccceeeEEeecC-CchhhhhhhhhccCCCCCCcchhh
Q 037086 330 LVTDRPTIIFGADVTHPQ---RG--EDSSPSIAAVVASMDWPEVTKYRGLVSAQA-RHEEIIQDLYKSIQDPQRGLVHGG 403 (426)
Q Consensus 330 ~l~~~~tmiiG~DVsh~~---~~--~~~~pSi~avv~S~d~~~~~~y~~~~~~Q~-~~~e~i~~~~~~~~~~~~~~~~~~ 403 (426)
++.+.+|||||+||+||+ ++ ....||+||||||+| ..+++|.+.+++|. +++|+|+++ ++
T Consensus 151 ~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~ 216 (388)
T 2yha_A 151 LLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TD 216 (388)
T ss_dssp HHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HH
T ss_pred ccCCCCEEEEEEEEecccccCCCCcCCCCCEEEEEEEEcC-CCCCEEEEEEEEcCCCcccHHHHH-------------HH
Confidence 565679999999999998 76 346899999999999 99999999999999 999999999 99
Q ss_pred HHHHHHHHHHH---HcCCCCCceEeC
Q 037086 404 MIRELLIAFNR---STNRKPESIIFY 426 (426)
Q Consensus 404 ~~~~~l~~f~~---~n~~~P~~IiiY 426 (426)
|+.++|+.|++ +|+.+|+|||||
T Consensus 217 ~~~~~L~~~~~~~~~~~~~P~rIiiy 242 (388)
T 2yha_A 217 KFKTRLELWRSNPANNRSLPENILIF 242 (388)
T ss_dssp HHHHHHHHHHHSGGGTTCCCSEEEEE
T ss_pred HHHHHHHHHHHhhhhcCCCCceEEEE
Confidence 99999999999 889999999998
No 6
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=1e-44 Score=363.40 Aligned_cols=225 Identities=24% Similarity=0.437 Sum_probs=191.0
Q ss_pred cccccccc-CcccceeEEEEeCCCCCCChHHHHHHHHHHHHHhcCCcCCCCCC-c--cccCCCchHHHHHHHHHHHHHhh
Q 037086 177 MINKKMFN-GGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPV-I--PISSSNPNQIEKALVDVHNRTTQ 252 (426)
Q Consensus 177 ~~~~~f~~-~~~~~~w~vi~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~~ 252 (426)
+++++|++ ++++++|++++++.+.+...++.|++.|.+.|+.+||.+..+.. . .........+ .++++...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~--- 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELM--- 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHH---
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHH--HHHHhhcc---
Confidence 46788999 68999999999965557788999999999999999999987531 1 1222222222 33444322
Q ss_pred CCCCceEEEEEeCCCCCc-hhhHhhhhccccceeeeeecccccccCCHh--HHHHHHHhhhcccCceeeeeccccccCCC
Q 037086 253 QGKQLQLLIIILPDDKGS-YGRIKRVCETELGIVSQCCQPKQASKLSMQ--YFENVALKINVKVGGRNTVLVDAVQKRIP 329 (426)
Q Consensus 253 ~~~~~~lv~~vl~~~~~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~--~~~ni~lKiN~KlGG~n~~l~~~~~~~~p 329 (426)
.+++|||||+|+++.+ |+.||+++|.+.||+||||..+++.|.+++ +++||+||||+||||+||.|+.+ +|
T Consensus 77 --~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~----~~ 150 (437)
T 2yhb_A 77 --SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IP 150 (437)
T ss_dssp --HTCSEEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC----CH
T ss_pred --CCCcEEEEEECCCChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceecccc----cc
Confidence 3799999999998877 999999999999999999999999988888 99999999999999999999864 56
Q ss_pred ccCCCCeEEeeecccCCC---CC--CCCCCeEEEEEEeeCCCCccceeeEEeecC-CchhhhhhhhhccCCCCCCcchhh
Q 037086 330 LVTDRPTIIFGADVTHPQ---RG--EDSSPSIAAVVASMDWPEVTKYRGLVSAQA-RHEEIIQDLYKSIQDPQRGLVHGG 403 (426)
Q Consensus 330 ~l~~~~tmiiG~DVsh~~---~~--~~~~pSi~avv~S~d~~~~~~y~~~~~~Q~-~~~e~i~~~~~~~~~~~~~~~~~~ 403 (426)
++.+.+|||||+||+||+ ++ ....||+||+|||+| ..+++|.+.+++|. +++|+|+++ ++
T Consensus 151 ~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~ 216 (437)
T 2yhb_A 151 LLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TD 216 (437)
T ss_dssp HHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HH
T ss_pred ccCCCCEEEEEEEEeccccccCCCcCCCCCEEEEEEEecC-CCcCeeeeEEEEcCCcchhHHHHH-------------HH
Confidence 565679999999999998 66 346899999999999 99999999999999 999999999 99
Q ss_pred HHHHHHHHHHH---HcCCCCCceEeC
Q 037086 404 MIRELLIAFNR---STNRKPESIIFY 426 (426)
Q Consensus 404 ~~~~~l~~f~~---~n~~~P~~IiiY 426 (426)
|+.++|+.|++ +|+.+|+|||||
T Consensus 217 ~~~~~L~~~~~~~~~~~~~P~rIiiy 242 (437)
T 2yhb_A 217 KFKTRLELWRSNPANNRSLPENILIF 242 (437)
T ss_dssp HHHHHHHHHHTCGGGTTCCCSEEEEE
T ss_pred HHHHHHHHHHhhhhhcCCCCceEEEE
Confidence 99999999999 889999999998
No 7
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=2.3e-43 Score=370.84 Aligned_cols=377 Identities=15% Similarity=0.094 Sum_probs=257.2
Q ss_pred hccCCEEEEe--------ecCCceeEEEecccCCCCCCe--EE---ecCCC-ceeeHHHHHHHhcCccccCCCCceEecC
Q 037086 4 ALKGIKVVLT--------HVEYNRSYKITGISSQPMSQL--MF---IDDNG-TRMSVIQYFLEKSNIALQFTSLPAVLAG 69 (426)
Q Consensus 4 ~l~gl~v~~~--------~~~~~~~~~I~~i~~~~a~~~--~F---~~~~g-~~itv~~Yf~~~y~i~l~~p~~Plv~~~ 69 (426)
...|.-|.+. |+.|++.|++++ +++..+.+ +| ..++| ..+++.+||.++|++ ++++||+|.++
T Consensus 173 ~~~g~~~~~~~~~~~~~vy~~n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~y~i--~d~~QPllvs~ 249 (771)
T 1u04_A 173 THKENLMLKDIASPLKTVYKPCFEEYTKKP-KLDHNQEIVKYWYNYHIERYWNTPEAKLEFYRKFGQ--VDLKQPAILAK 249 (771)
T ss_dssp HSTTTCEEEETTSTTCCEEEECBCTTSSCB-CEECCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHCS--CCTTSCEEEEE
T ss_pred hccCcEEeeeccccceeEeecccceeecCC-ccccCCCChhheeceeecCCCCCcchhHHHHHhcCc--CcCCCCeEEec
Confidence 3566667777 776778888877 77666655 55 32221 356777777799995 99999999986
Q ss_pred CC-------CCcccccccceEecCCCccCCCCCHHHHHHHHHHhcCChhHHHHHHHHHHHHc-----CCCC--Ccccccc
Q 037086 70 SE-------ARPIYLPMELSRIVAGQRYTKRFNERQVTALLRATCQRPREREENIRMMTRAN-----AYND--DTLVNRE 135 (426)
Q Consensus 70 ~~-------~k~~~~P~El~~i~~~Q~~~~~l~~~~~~~~i~~~~~~P~~r~~~i~~~~~~l-----~~~~--~~~l~~~ 135 (426)
.+ .+.+++.||||.+++ ...+++.+.+++|..++...|++|.+.+.++++.+ .-+. .+.|+ .
T Consensus 250 ~~~~~~~~~~~~i~LiPELc~~TG---~~~~~~~~~MK~la~~trl~P~~R~~~l~~~~~~l~~~~~~~~~~~~~~l~-~ 325 (771)
T 1u04_A 250 FASKIKKNKNYKIYLLPQLVVPTY---NAEQLESDVAKEILEYTKLMPEERKELLENILAEVDSDIIDKSLSEIEVEK-I 325 (771)
T ss_dssp ESCC-----CCCEEECTTTEEEEE---EGGGC----CCHHHHHHCCCHHHHHHHHHHHHHHCCCSSBCSSCCEEEEEE-C
T ss_pred chhhccCCCCceeeechHhhhhcC---chhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHh-h
Confidence 42 246899999999997 23345667788999999999999999999999998 3332 24666 7
Q ss_pred cCeeecCceeEeeeeecCCCeeeeccCCcceeecCCCcccc--ccccccccCcc----cce------eEEEEeCCCCCCC
Q 037086 136 FGIQVADVLTLVDARILPAPMLKYHESGREASVNPGFGQWN--MINKKMFNGGR----VEV------WTCVNFSTDLDPD 203 (426)
Q Consensus 136 ~Gi~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~p~~g~W~--~~~~~f~~~~~----~~~------w~vi~~~~~~~~~ 203 (426)
|| .++.. +.|.++...+-.+.+++- ..+..++|. +++.+++.+.. +.+ |+++ ..+ ...
T Consensus 326 ~~-~l~~~-~~v~~~~~~~~~i~~~~~-----~~~~~adW~~~~~~~~~~~~~~~p~~l~~~~~i~~wil~-~~~--~~~ 395 (771)
T 1u04_A 326 AQ-ELENK-IRVRDDKGNSVPISQLNV-----QKSQLLLWTNYSRKYPVILPYEVPEKFRKIREIPMFIIL-DSG--LLA 395 (771)
T ss_dssp CG-GGGSS-EEEECSSSCEEESCCC-------------CGGGGSCCCCCCCCSBCCTHHHHCCCCCEEEEE-ETT--SCH
T ss_pred hh-ccCcC-cccccccccccceeecCc-----CCCccCCcchhhCCCcceecccchhhhhcccccceEEEE-eCC--chH
Confidence 77 57655 776655555533444430 123478995 55666655442 444 6665 343 367
Q ss_pred hHHHHH---------HHHHHHHHhcC-----------CcCCCCC------CccccCCCchHHHHHHHHHHHHHhhCCCCc
Q 037086 204 VPFQFC---------QGLVDVCNSKG-----------MVFNPRP------VIPISSSNPNQIEKALVDVHNRTTQQGKQL 257 (426)
Q Consensus 204 ~~~~f~---------~~l~~~~~~~G-----------~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 257 (426)
.+++|+ +.|.+.++.+| +.++.+. .+.....+.+.+++.++.+.+.+. +..+
T Consensus 396 ~~~~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~~~i~~~l~~~~~~~~--~~~~ 473 (771)
T 1u04_A 396 DIQNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSDKGIIEVVEQVSSFMK--GKEL 473 (771)
T ss_dssp HHHHHHHHHHHHHHHHHCC-----------------------------CEEEEECTTSHHHHHHHHHHHHHHHT--TCSC
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccchhhcccccccccCCCcccccCcceecccccchHHHHHHHHHHHHhcc--CCCC
Confidence 788888 55555553333 3333311 111110123467778888777642 3467
Q ss_pred eEEEEEeC-CCCCc-hhhHhhhhccccceeeeeecccccccC----C-----HhHHHHHHHhhhcccCceeeeecccccc
Q 037086 258 QLLIIILP-DDKGS-YGRIKRVCETELGIVSQCCQPKQASKL----S-----MQYFENVALKINVKVGGRNTVLVDAVQK 326 (426)
Q Consensus 258 ~lv~~vl~-~~~~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~----~-----~~~~~ni~lKiN~KlGG~n~~l~~~~~~ 326 (426)
++|+|+++ .+..+ |+.||+.+ ...||+||||..+|+.+. + .+++.||++|||+||||+||.|+.+
T Consensus 474 ~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~KLGG~pW~L~~p--- 549 (771)
T 1u04_A 474 GLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDYR--- 549 (771)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHHHTTCBCCEESCC---
T ss_pred CEEEEEEcCCCCcchHHHHHHHH-hcCCcccEEEecccccCccccccccchhHHHHHHHHHHHHHHhCCcceeecCC---
Confidence 99877775 44456 99999997 799999999999998653 2 7889999999999999999999643
Q ss_pred CCCccCCCCeEEeeecccCCCCCCCCCCeEEEEEEeeCCCCccceeeEEeecCCchhhhhhhhhccCCCCCCcchhhHHH
Q 037086 327 RIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIR 406 (426)
Q Consensus 327 ~~p~l~~~~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~~~~y~~~~~~Q~~~~e~i~~~~~~~~~~~~~~~~~~~~~ 406 (426)
. .++||||+||+|++++ ...++++|+|+|.| ....+|.+....|.++++ ++ + ++++.
T Consensus 550 ---~---~~tmiIGiDV~H~~~~-~~svs~~A~V~s~d-g~~~~~~s~~~~~~~~E~-i~-l-------------~~~l~ 606 (771)
T 1u04_A 550 ---F---NYDYIIGIDVAPMKRS-EGYIGGSAVMFDSQ-GYIRKIVPIKIGEQRGES-VD-M-------------NEFFK 606 (771)
T ss_dssp ---C---SSSEEEEEEEEEECCT-TTCEEEEEEEEETT-SCEEEEEEEECCCCSSSS-CC-H-------------HHHHH
T ss_pred ---C---CCEEEEEEEEEcCCCC-CCceEEEEEEECCC-CCEEEEEEEEeecCCccE-Ec-H-------------HHHHH
Confidence 2 5899999999998654 35788899999999 788888876655655544 43 5 88999
Q ss_pred HHHHHHHHH-cCCCCCceEeC
Q 037086 407 ELLIAFNRS-TNRKPESIIFY 426 (426)
Q Consensus 407 ~~l~~f~~~-n~~~P~~IiiY 426 (426)
++|.+|++. ++.+|+|||||
T Consensus 607 ~~L~~y~~~n~~~lP~RIIiy 627 (771)
T 1u04_A 607 EMVDKFKEFNIKLDNKKILLL 627 (771)
T ss_dssp HHHHHHHHTTCCCTTCEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEEEE
Confidence 999999999 58899999998
No 8
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.97 E-value=2.7e-30 Score=219.81 Aligned_cols=138 Identities=64% Similarity=1.135 Sum_probs=123.4
Q ss_pred ccccccCcccceeEEEEeCCCCCCChHHHHHHHHHHHHHhcCCcCCCCCCccccCCCchHHHHHHHHHHHHHhhCCCCce
Q 037086 179 NKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQ 258 (426)
Q Consensus 179 ~~~f~~~~~~~~w~vi~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 258 (426)
+++|++|+++++|++++|+++.+...++.|++.|.+.|+.+||.++.+|.+.....+++++++.|+++++.+ .+++
T Consensus 2 ~kkf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~e~~l~~~~~~~----~~~q 77 (139)
T 4g0o_A 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDIHKRA----PGLQ 77 (139)
T ss_dssp CEEEEECCEECSEEEEECCSSSCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCEECCGGGHHHHHHHHHHHC----TTCS
T ss_pred CCeEccCcccCeEEEEEccCCCCHHHHHHHHHHHHHHHHHcCCccCCCCEEeeecCCchhHHHHHHHHHHhc----CCCc
Confidence 568999999999999998766678899999999999999999999887765443445778899999888764 4799
Q ss_pred EEEEEeCCCCCchhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcccCceeeee
Q 037086 259 LLIIILPDDKGSYGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVGGRNTVL 320 (426)
Q Consensus 259 lv~~vl~~~~~~Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~KlGG~n~~l 320 (426)
|||||+|+++.+|+.||+++|.+.||+||||..+++.|.++||++||+||||+||||+||.|
T Consensus 78 lv~~ilp~~~~~Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 78 LLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp EEEEECCSSSSCHHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHhccCCcceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 99999999876699999999999999999999999999999999999999999999999975
No 9
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.96 E-value=3.2e-30 Score=221.59 Aligned_cols=142 Identities=58% Similarity=1.019 Sum_probs=125.5
Q ss_pred ccccccCcccceeEEEEeCCCCCCChHHHHHHHHHHHHHhcCCcCCCCCCccccCCCchHHHHHHHHHHHHHhhC---CC
Q 037086 179 NKKMFNGGRVEVWTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQ---GK 255 (426)
Q Consensus 179 ~~~f~~~~~~~~w~vi~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~ 255 (426)
+++|++|+++.+|+++++++..+++.++.|++.|.+.|+.+||.++.++.+.+...+++++++.|+++++.+..+ +.
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (147)
T 4g0x_A 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQGK 81 (147)
T ss_dssp CCCEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEECCGGGHHHHHHHHHHHHHHTSSTTC
T ss_pred CCEEecCCccCeEEEEEccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCeeeccCCChHHHHHHHHHHHHHHHhhcccCC
Confidence 568999999999999998765555688999999999999999999988876555567889999999888765422 36
Q ss_pred CceEEEEEeCCCCCc-hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcccCceeeee
Q 037086 256 QLQLLIIILPDDKGS-YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVGGRNTVL 320 (426)
Q Consensus 256 ~~~lv~~vl~~~~~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~KlGG~n~~l 320 (426)
+++|||||+|+++.+ |+.||+++|.+.||+||||..+++.|.++||++||+||||+||||+||.|
T Consensus 82 ~~~lv~~il~~~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 82 EIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp CCCEEEEEECSSCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 799999999999888 99999999999999999999999999899999999999999999999975
No 10
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.95 E-value=1.8e-28 Score=208.30 Aligned_cols=135 Identities=31% Similarity=0.516 Sum_probs=115.5
Q ss_pred cccccccCcccceeEEEEeCCC--CCCChHHHHHHHHHHHHHhcCCcCCCCCCccccCCCchHHHHHHHHHHHHHhhCCC
Q 037086 178 INKKMFNGGRVEVWTCVNFSTD--LDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGK 255 (426)
Q Consensus 178 ~~~~f~~~~~~~~w~vi~~~~~--~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 255 (426)
++++|++|+++.+|++++|++. .+.+.++.|++.|.+.|+.+||.++.+|.+.....+++.+++.|+++.+.. .
T Consensus 1 ~~kkf~~~~~l~~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~~~~~~~v~~~~~~l~~~~----~ 76 (138)
T 3luc_A 1 SNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTY----A 76 (138)
T ss_dssp --CCCCCCCCBCSEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSSCSEEEECCSGGGHHHHHHHHHHHC----T
T ss_pred CcCeecCCcccceEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecCCcHHHHHHHHHHHHhcC----C
Confidence 3678999999999999998743 467789999999999999999999877755443445678888888877652 4
Q ss_pred CceEEEEEeCCCCCc-hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcccCcee
Q 037086 256 QLQLLIIILPDDKGS-YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVGGRN 317 (426)
Q Consensus 256 ~~~lv~~vl~~~~~~-Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~KlGG~n 317 (426)
+++|||||+|+ +.+ |+.||+++|.+.||+||||..+++.|.++||++||+||||+||||+|
T Consensus 77 ~~qlv~~ilp~-~~~~Y~~iK~~~~~~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 77 GLQLVVVILPG-KTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp TCCEEEEEECS-SCHHHHHHHHHHHTTSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred CCcEEEEEECC-CChHHHHHHHHhccCCCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 79999999996 456 99999999999999999999999999999999999999999999987
No 11
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.95 E-value=2.6e-28 Score=210.38 Aligned_cols=142 Identities=33% Similarity=0.528 Sum_probs=106.2
Q ss_pred ccccccCcccceeEEEEeCCCCC-CChHHHHHHHHHHHHHhcCCcCCCCCCcccc----CCCchHHHHHHHHHHHHHhhC
Q 037086 179 NKKMFNGGRVEVWTCVNFSTDLD-PDVPFQFCQGLVDVCNSKGMVFNPRPVIPIS----SSNPNQIEKALVDVHNRTTQQ 253 (426)
Q Consensus 179 ~~~f~~~~~~~~w~vi~~~~~~~-~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~ 253 (426)
+++|++|+++++|++++|++... .+.++.|++.|.+.|+.+||.+++|.+.... ..+++++++.|+.+++++..+
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~~f~~~l~~~~~~~Gm~i~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (150)
T 4g0m_A 2 KKGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEELLRSVIDEASRK 81 (150)
T ss_dssp -------CEECSEEEEETTTTTSTTCCCTTHHHHHHHHHHHTTCEECCCSEEEECCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCeECCCcccCeEEEEEecCCcchhHHHHHHHHHHHHHHHHcCCccCCCceeeccccccccCchHHHHHHHHHHHHHHHh
Confidence 56899999999999999875421 2478999999999999999999865433211 235678888888877765422
Q ss_pred --CCCceEEEEEeCCCCCchhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhcccCceeeee
Q 037086 254 --GKQLQLLIIILPDDKGSYGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINVKVGGRNTVL 320 (426)
Q Consensus 254 --~~~~~lv~~vl~~~~~~Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~KlGG~n~~l 320 (426)
+..|+||+||+|++++.|+.||+++|.+.||+||||..+++.|.++||++||+||||+||||+||.|
T Consensus 82 ~~~~~pqlv~~ilp~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 82 HGGARPTLVLCAMSRKDDGYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp TTTCCCCEEEEEESSCCTHHHHHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred cCCCCCcEEEEEECCCCccHHHHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 2368999999999873499999999999999999999999999999999999999999999999975
No 12
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=99.94 E-value=2.6e-27 Score=202.13 Aligned_cols=106 Identities=31% Similarity=0.583 Sum_probs=77.8
Q ss_pred ChhhccCCEEEEeecC----CceeEEEecccCCCCCCeEEecCCCceeeHHHHHHHhcCccccCCCCceEecCCCCCccc
Q 037086 1 VEEALKGIKVVLTHVE----YNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEARPIY 76 (426)
Q Consensus 1 ~~~~l~gl~v~~~~~~----~~~~~~I~~i~~~~a~~~~F~~~~g~~itv~~Yf~~~y~i~l~~p~~Plv~~~~~~k~~~ 76 (426)
++++|+||+|.++|++ ++++|+|.||++.+|++.+| +.+|+++||+|||+++ |++|+||+||||++|++.+.+|
T Consensus 33 ~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F-~~~g~~isv~~Yf~~~-~~~l~~p~lP~l~~g~~~k~~y 110 (143)
T 1vyn_A 33 LEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETF-EHDGKKVTIASYFHSR-NYPLKFPQLHCLNVGSSIKSIL 110 (143)
T ss_dssp SHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEE-ESSSCEEEHHHHHHHT-TCCCSSTTSEEEEEECSSSEEE
T ss_pred HHHHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEE-EcCCCEEEHHHHHHHc-CCCCCCCCCCeEEecCCCCCeE
Confidence 4688999999999964 57899999999999999999 4468899999999998 9999999999999998888999
Q ss_pred ccccceEecCCCccCCCCCHHHHHHHHHHhcC
Q 037086 77 LPMELSRIVAGQRYTKRFNERQVTALLRATCQ 108 (426)
Q Consensus 77 ~P~El~~i~~~Q~~~~~l~~~~~~~~i~~~~~ 108 (426)
+|||||.|+|||+++++|++.++++||++|+.
T Consensus 111 lP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~ 142 (143)
T 1vyn_A 111 LPIELCSIEEGQALNRKDGATQVANMIKYAAT 142 (143)
T ss_dssp EEGGGEEECC----------------------
T ss_pred eccEeEEccCCccccccCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999875
No 13
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=99.93 E-value=3.9e-27 Score=236.01 Aligned_cols=228 Identities=14% Similarity=0.093 Sum_probs=148.0
Q ss_pred ecCCCeeeeccC-Ccce----eecCCCccccccccccccCccc--ceeEEEEeCCCCCCChHHHHHHHHHHHHH---hcC
Q 037086 151 ILPAPMLKYHES-GREA----SVNPGFGQWNMINKKMFNGGRV--EVWTCVNFSTDLDPDVPFQFCQGLVDVCN---SKG 220 (426)
Q Consensus 151 vL~~P~i~~~~~-~~~~----~~~p~~g~W~~~~~~f~~~~~~--~~w~vi~~~~~~~~~~~~~f~~~l~~~~~---~~G 220 (426)
-|..|.+.|+.+ ++.. +.+|..| +++...+..... .+|++++..+ +.+ |++.|.+.+. ..+
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~~--~~~----~l~~l~~~~~~~~g~~ 75 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNNQ--FSS----LINQLKSQISSKIDEV 75 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESCT--TCH----HHHHHHHHHHHHHHHT
T ss_pred ccCCCcceeeccCCCcccccccCCHHHH---HHhcCCCccCCCCCCEEEEEECcc--cHH----HHHHHHHhhhhcCCCc
Confidence 466788998833 2211 1233333 333344554333 7999996433 222 5555555433 234
Q ss_pred CcCCCCCCccccCCCchHHHHHHHHHHHHHhhCCCCceEEEEEe--------CCCCCchhhHhhhhccccceeeeeeccc
Q 037086 221 MVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIIL--------PDDKGSYGRIKRVCETELGIVSQCCQPK 292 (426)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lv~~vl--------~~~~~~Y~~iK~~~~~~~gV~TQ~v~~~ 292 (426)
+.+..+. .+.+.+.+.+.+..+. +++++|||+ |++.++|..+|+ +..+.||+||||..+
T Consensus 76 f~~~~~~------~~~~~y~~~i~~~l~~------~~~lvlvilp~~~~~~~~~~~~~~y~~K~-~~~~~gvptQ~I~~~ 142 (427)
T 2w42_A 76 WHIHNIN------ISEFIYDSPHFDSIKS------QVDNAIDTGVDGIMLVLPEYNTPLYYKLK-SYLINSIPSQFMRYD 142 (427)
T ss_dssp TCCCSCE------EEEEECSSSSHHHHHH------HHHHHHHHCCSEEEEEESSCCHHHHHHHH-HHHHTTSCEEEEEGG
T ss_pred eeecCCc------CChHHHHHHHHHHhcC------CCCEEEEEEEccccccCCCCCcchHHHHH-HHhCCCcCcEEEEhh
Confidence 4443211 1122233333333332 588999999 555545445786 557999999999999
Q ss_pred ccccCCH-hHHHHHHHhhhcccCceeeeeccccccCCCccCCCCeEEeeecccCCCCCCCCCCeEEEEEEeeCCCCccce
Q 037086 293 QASKLSM-QYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVTKY 371 (426)
Q Consensus 293 t~~k~~~-~~~~ni~lKiN~KlGG~n~~l~~~~~~~~p~l~~~~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~~~~y 371 (426)
|+.+.+. .+++||++|||+||||+||.|+.. .| + .++||||+||+|++++ +++|++..+| .+...+
T Consensus 143 tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~-~--~~~miiGidv~h~~~~-----~v~g~a~v~~-~~g~~~ 209 (427)
T 2w42_A 143 ILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PE-K--GSDIIIGTGATRIDNV-----NLFCFAMVFK-KDGTML 209 (427)
T ss_dssp GCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TT-S--SCSEEEEEEEEESSSS-----EEEEEEEEEC-TTSCEE
T ss_pred hcccccchhHHHHHHHHHHHHhCCcceecccC----CC-C--CCeEEEEEEEEEcCCC-----cEEEEEEEEc-CCCCEE
Confidence 9987665 458999999999999999999752 12 2 5799999999998863 6777755555 444445
Q ss_pred eeEEeecCCchhhhhhhhhccCCCCCCcchhhHHHHHHHHHHH-HcCCCCC--ceEeC
Q 037086 372 RGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFNR-STNRKPE--SIIFY 426 (426)
Q Consensus 372 ~~~~~~Q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~l~~f~~-~n~~~P~--~IiiY 426 (426)
.+.+..|.+++|+++++ ++++.++|..|++ .|+.+|+ |||||
T Consensus 210 ~~~~~~~~~~~E~~~~l-------------~~~l~~aL~~y~~~~~~~~P~~~rIii~ 254 (427)
T 2w42_A 210 WNEISPIVTSSEYLTYL-------------KSTIKKVVYGFKKSNPDWDVEKLTLHVS 254 (427)
T ss_dssp EEEECCCEEGGGHHHHH-------------HHHHHHHHHHHHHHCTTCCCSEEEEEEE
T ss_pred EEEEEecCChhHHHHHH-------------HHHHHHHHHHHHHHhcCCCCCceEEEEE
Confidence 55566666789999999 9999999999999 9999998 66885
No 14
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=99.91 E-value=4e-25 Score=189.96 Aligned_cols=110 Identities=18% Similarity=0.346 Sum_probs=77.5
Q ss_pred hhhccCCEEEEeecCCceeEEEecccCCCCCCeEEecCCCceeeHHHHHHHhcCccccCCCCceEecCCCC---------
Q 037086 2 EEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEA--------- 72 (426)
Q Consensus 2 ~~~l~gl~v~~~~~~~~~~~~I~~i~~~~a~~~~F~~~~g~~itv~~Yf~~~y~i~l~~p~~Plv~~~~~~--------- 72 (426)
+++|+|++|.++| ++++|+|.||+|+++++++|...+|..+||+|||+++||++|+||+||||.++.+.
T Consensus 26 ~~~l~g~~V~t~y--~nr~yrI~~i~~~~~p~~~F~~~~g~~~T~~eYf~~~Y~i~i~~~~qPlL~~~~~~~~~~~~~~~ 103 (150)
T 2xfm_A 26 SKELIGLIVLTKY--NNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQPVLVSQPKRRRGPGGTLP 103 (150)
T ss_dssp HHHHTTCEEEETT--TTEEEECCEEETTCCTTCCCCSSSSCCCCHHHHHHTTCCCCCCCSSSCEEEECSSCTTCCSSCSS
T ss_pred HHHhCCcEEEEee--CCceEEeeecCCCCCccCeeecCCCceeeHHHHHHHHcCCccCCCCCCeEEeccccccccccccc
Confidence 5789999999999 57999999999999999999445788999999999999999999999999998642
Q ss_pred CcccccccceEecCCCccCCCCCHHHHH------HHHHHhcCChhHHHHHHHHH
Q 037086 73 RPIYLPMELSRIVAGQRYTKRFNERQVT------ALLRATCQRPREREENIRMM 120 (426)
Q Consensus 73 k~~~~P~El~~i~~~Q~~~~~l~~~~~~------~~i~~~~~~P~~r~~~i~~~ 120 (426)
+.+|+|||||.++ +|++++++ +|++.|+..|.+|.+.|.++
T Consensus 104 ~~~~LppELC~i~-------~L~d~~rs~~~~mk~l~~~t~~~P~~R~~~i~~f 150 (150)
T 2xfm_A 104 GPAMLIPELCYLT-------GLTDKMRNDFNVMKDLAVHTRLTPEQRQREVGRL 150 (150)
T ss_dssp CCEEECGGGEEEC-------STTC------------------------------
T ss_pred ceEEecHHHhccC-------CCCHHHHhhHHHHHHHHHHHccCHHHHHHHHhcC
Confidence 5689999999999 57888766 58999999999999988753
No 15
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=99.90 E-value=1.6e-24 Score=184.60 Aligned_cols=108 Identities=19% Similarity=0.314 Sum_probs=75.3
Q ss_pred hhhccCCEEEEeecCCceeEEEecccCCCCCCeEEecCCCceeeHHHHHHHhcCccccCCCCceEecCCCC---------
Q 037086 2 EEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEA--------- 72 (426)
Q Consensus 2 ~~~l~gl~v~~~~~~~~~~~~I~~i~~~~a~~~~F~~~~g~~itv~~Yf~~~y~i~l~~p~~Plv~~~~~~--------- 72 (426)
+++|+|+.|.|.| +++.|+|.||+|+.++.++|...+|..+||+|||+++||++|+||+||||.++.+.
T Consensus 25 ~k~l~g~~V~t~y--nnk~YrI~~I~~~~~p~s~F~~~dg~~iT~~eYf~~kY~i~I~~~~qPlL~~~~k~~~~~~~~~~ 102 (148)
T 3qir_A 25 TKLLVGNIVITRY--NNRTYRIDDVDWNKTPKDSFTMSDGKEITFLEYYSKNYGITVKEEDQPLLIHRPSERQDNHGMLL 102 (148)
T ss_dssp HHHHTTCEEEETT--TCCEEECCEEETTCCTTSEEECTTSCEEEHHHHHHHHHCCCCSCTTCCEEEECCTTCCCC---CC
T ss_pred HHHcCCCEEEEcc--CCcEEEEeeecCCCCcCccccCCCCCcccHHHHHHHHcCCeecCCCCceEEeecccccCCCCCCc
Confidence 5789999999999 56899999999999999999666799999999999999999999999999998642
Q ss_pred -CcccccccceEecCCCccCCCCCHHHHH------HHHHHhcCChhHHHHHHH
Q 037086 73 -RPIYLPMELSRIVAGQRYTKRFNERQVT------ALLRATCQRPREREENIR 118 (426)
Q Consensus 73 -k~~~~P~El~~i~~~Q~~~~~l~~~~~~------~~i~~~~~~P~~r~~~i~ 118 (426)
+.+|+|||||.++ +|++++++ +|...++..|.+|...|+
T Consensus 103 ~~~~yL~pELC~lt-------gLtd~~r~d~~~mk~l~~~tr~~P~~R~~~l~ 148 (148)
T 3qir_A 103 KGEILLLPELSFMT-------GIPEKMKKDFRAMKDLAQQINLSPKQHHSALE 148 (148)
T ss_dssp SCCEEECGGGEECC---------------------------------------
T ss_pred cceeeecHHHhhhc-------CCCHHHHhhhHHHHHHHHHHCCCHHHHHHhhC
Confidence 4689999999999 47777755 799999999999998764
No 16
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=99.89 E-value=6.1e-24 Score=175.93 Aligned_cols=89 Identities=35% Similarity=0.618 Sum_probs=77.5
Q ss_pred ChhhccCCEEEEeecC----CceeEEEecccCCCCCCeEEecCCCceeeHHHHHHHhcCccccCCCCceEecCCCCCccc
Q 037086 1 VEEALKGIKVVLTHVE----YNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEARPIY 76 (426)
Q Consensus 1 ~~~~l~gl~v~~~~~~----~~~~~~I~~i~~~~a~~~~F~~~~g~~itv~~Yf~~~y~i~l~~p~~Plv~~~~~~k~~~ 76 (426)
++++|+||+|+++|++ ++++|+|.||++.+|++.+|.. +|..+||+|||+++ |++|+||+||||++|+..+.+|
T Consensus 31 ~~k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~~-~g~~isV~~Yf~~~-~~~l~~p~lP~l~~g~~~~~~y 108 (124)
T 3mj0_A 31 LEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH-DGKKVTIASYFHSR-NYPLKFPQLHCLNVGSSIKSIL 108 (124)
T ss_dssp HHHHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEES-SSSEEEHHHHHHTT-TCCCSCSSSEEEECCBTTBCCE
T ss_pred HHHHhCCeEEEEecccccccCCceEEEEeccCCCccccEEee-CCcEEEHHHHHHHc-CCcccCCCCCeEeecCCCCceE
Confidence 4689999999999963 5789999999999999999944 68999999999997 9999999999999998888999
Q ss_pred ccccceEecCCCccC
Q 037086 77 LPMELSRIVAGQRYT 91 (426)
Q Consensus 77 ~P~El~~i~~~Q~~~ 91 (426)
||||+|.|+|||+++
T Consensus 109 lP~Elc~i~~gQ~~~ 123 (124)
T 3mj0_A 109 LPIELCSIEEGQALN 123 (124)
T ss_dssp ECGGGEEEEC-----
T ss_pred ecceeEEECCCCccC
Confidence 999999999999985
No 17
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=99.86 E-value=3.4e-22 Score=164.88 Aligned_cols=90 Identities=18% Similarity=0.351 Sum_probs=77.5
Q ss_pred hhhccCCEEEEeecCCceeEEEecccCCCCCCeEEecCCCceeeHHHHHHHhcCccccCCCCceEecCCCC---------
Q 037086 2 EEALKGIKVVLTHVEYNRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEA--------- 72 (426)
Q Consensus 2 ~~~l~gl~v~~~~~~~~~~~~I~~i~~~~a~~~~F~~~~g~~itv~~Yf~~~y~i~l~~p~~Plv~~~~~~--------- 72 (426)
+++|+|+.|.+.| +++.|+|.+|+|+.++.++|...+|+.+||+|||+++||++|++|+||||.++.+.
T Consensus 25 ~k~l~G~~V~t~y--nnk~YrI~~I~~~~~p~s~F~~~dg~~~T~~eYyk~kY~i~I~~~~QPLL~~~~k~~~~~~~~~~ 102 (124)
T 3o7v_X 25 SKELIGLVVLTKY--NNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQPMLVSQPKRRRGPGGTLP 102 (124)
T ss_dssp HHHHTTCEEEETT--SSCEEECCEEETTCCTTCEEECTTSCEEEHHHHHHHHHCCCCCCSSCCEEEECCC----------
T ss_pred HHHcCCCEEEEee--CCeEEEEeeeCCCCCccCcccCCCCCeeeHHHHHHHHhCceecCCCcceEEEeeecccCCCCCCc
Confidence 5789999999999 57999999999999999999666799999999999999999999999999998542
Q ss_pred CcccccccceEecCCCccCCCCCHHHHH
Q 037086 73 RPIYLPMELSRIVAGQRYTKRFNERQVT 100 (426)
Q Consensus 73 k~~~~P~El~~i~~~Q~~~~~l~~~~~~ 100 (426)
+.+|+|||||.++ +|++++++
T Consensus 103 ~~iyLipELC~lt-------Gltd~~r~ 123 (124)
T 3o7v_X 103 GPAMLIPELCYLT-------GLTDKMRN 123 (124)
T ss_dssp CCEEECGGGEECC-------CCC-----
T ss_pred ceEEechhheecc-------CCChHhcc
Confidence 5689999999999 68888765
No 18
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.77 E-value=9e-20 Score=188.09 Aligned_cols=93 Identities=33% Similarity=0.606 Sum_probs=77.0
Q ss_pred ChhhccCCEEEEeecCC----ceeEEEecccCCCCCCeEEecCCCceeeHHHHHHHhcCccccCCCCceEecCCCCCccc
Q 037086 1 VEEALKGIKVVLTHVEY----NRSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSEARPIY 76 (426)
Q Consensus 1 ~~~~l~gl~v~~~~~~~----~~~~~I~~i~~~~a~~~~F~~~~g~~itv~~Yf~~~y~i~l~~p~~Plv~~~~~~k~~~ 76 (426)
++++|+||+|+++|+++ +|.|+|.+|++.++.+.+| +.+|++|||+|||+ +||++|+||++|||++|++++++|
T Consensus 413 ~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f-~~~~~~~sv~~yf~-~~~~~l~~p~lp~v~~~~~~~~~~ 490 (509)
T 1r6z_P 413 LEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETF-EHDGKKVTIASYFH-SRNYPLKFPQLHCLNVGSSIKSIL 490 (509)
T ss_dssp HHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEE-EETTEEEEHHHHHH-HTTCCCSCTTSEEEECSCTTSCCE
T ss_pred HHHHhCCcEEEEecCCCccCCCCeEEEeeCCCCChhhcEe-ccCCeEEEHHHHHH-HcCCcccCCCCCeEecCCCCCCce
Confidence 35789999999999764 6799999999988999999 44688999999999 899999999999999998888999
Q ss_pred ccccceEecCCCccCCCCC
Q 037086 77 LPMELSRIVAGQRYTKRFN 95 (426)
Q Consensus 77 ~P~El~~i~~~Q~~~~~l~ 95 (426)
||||||.|+|||||+.+|+
T Consensus 491 ~P~e~~~i~~~q~~~~~~~ 509 (509)
T 1r6z_P 491 LPIELCSIEEGQALNRKDG 509 (509)
T ss_dssp ECGGGEEEEC---------
T ss_pred ecceeeEecCCccccccCC
Confidence 9999999999999998875
No 19
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=98.99 E-value=2.2e-10 Score=121.45 Aligned_cols=82 Identities=26% Similarity=0.386 Sum_probs=70.3
Q ss_pred hhhccCCEEEEeecCCc-eeEEEecccCCCCCCeEEecCCCceeeHHHHHHHhcCccccCCCCceEecCCC---------
Q 037086 2 EEALKGIKVVLTHVEYN-RSYKITGISSQPMSQLMFIDDNGTRMSVIQYFLEKSNIALQFTSLPAVLAGSE--------- 71 (426)
Q Consensus 2 ~~~l~gl~v~~~~~~~~-~~~~I~~i~~~~a~~~~F~~~~g~~itv~~Yf~~~y~i~l~~p~~Plv~~~~~--------- 71 (426)
.+.|+|..|.|.| |+ |+|+|.+|+++.+|.++|.+. ++.+|+.|||+++||++|++++||+|.++..
T Consensus 153 ~~~l~g~vV~t~y--nn~r~Y~i~~id~d~~P~S~F~~~-~~~~Ty~dYYk~ky~i~I~d~~QPLL~~~~~~~~~~~r~~ 229 (756)
T 2qvw_A 153 SASLHGRMVATPE--ISWSLYVVLGIDSTQTSLSYFTRA-NESITYMRYYATAHNIHLRAADLPLVAAVRLDDLKDHQIP 229 (756)
T ss_dssp TTTSTTCEEEETT--TTTEEEEEEEEEEEEETTSEEEET-TEEEEHHHHHHHTTCCCCSCTTSEEEEEEETTTTTTCCCC
T ss_pred HHHhCCCEEecCC--CCceEEEEEEecCCCCCCCcCCCC-CCCCCHHHHHHHHcCcccccCCCCeEEEEecccccccccc
Confidence 3578999999999 55 899999999999999999543 4689999999999999999999999987531
Q ss_pred ---------CCcccccccceEecC
Q 037086 72 ---------ARPIYLPMELSRIVA 86 (426)
Q Consensus 72 ---------~k~~~~P~El~~i~~ 86 (426)
.+.+++|||+|.+++
T Consensus 230 ~~~~~~~~~~~~v~L~PELC~vt~ 253 (756)
T 2qvw_A 230 APGSWDDLAPKLRFLPPELCLLLP 253 (756)
T ss_dssp STTC-CCSCSSCEEECTTTCEECC
T ss_pred cccccccCCccceeeCHHHheeec
Confidence 124799999999984
No 20
>3dvo_A Sgrair restriction enzyme; restriction enzyme/DNA complex; HET: DNA; 1.89A {Streptomyces griseus} PDB: 3dpg_A* 3dw9_A* 3mq6_A* 3mqy_A* 3n78_A* 3n7b_A*
Probab=41.63 E-value=74 Score=28.76 Aligned_cols=51 Identities=8% Similarity=0.133 Sum_probs=33.2
Q ss_pred CccccccccccccC-----cccceeEEEEeCCCCC-----CChHHHHHHHHHHHHHhcCCcCC
Q 037086 172 FGQWNMINKKMFNG-----GRVEVWTCVNFSTDLD-----PDVPFQFCQGLVDVCNSKGMVFN 224 (426)
Q Consensus 172 ~g~W~~~~~~f~~~-----~~~~~w~vi~~~~~~~-----~~~~~~f~~~l~~~~~~~G~~~~ 224 (426)
.|.|. ...|++| .+..+.+++.+.+..+ .+..++.+++|.+.+...||.+.
T Consensus 122 ~~~W~--~s~~~~~p~~~ptP~r~vAvl~LPr~fD~~kLf~~e~re~i~~le~~L~k~Gv~Li 182 (338)
T 3dvo_A 122 GEGWR--SQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLP 182 (338)
T ss_dssp TSCCC--CSSCCCCCCSCCCGGGCEEEEECCTTCCGGGGBCHHHHHHHHHHHHHHHHTTCBCC
T ss_pred cCCCc--cCcccCCccCCCCccceeEEEECCCccchhhhhhHHHHHHHHHHHHHHHhhceecc
Confidence 56665 3345543 3456788887655433 35677888888888888888763
No 21
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=28.48 E-value=1.6e+02 Score=26.84 Aligned_cols=66 Identities=23% Similarity=0.242 Sum_probs=43.4
Q ss_pred CCCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhc--ccCceeeeec
Q 037086 254 GKQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINV--KVGGRNTVLV 321 (426)
Q Consensus 254 ~~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~--KlGG~n~~l~ 321 (426)
+..|.|.++.+-+.... |...|.....+.||-+..+.... .....-+...+.++|. ...|++-.++
T Consensus 31 ~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~I~~lN~d~~v~GIlvqlP 100 (285)
T 3p2o_A 31 GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNE--NITQNELLALINTLNHDDSVHGILVQLP 100 (285)
T ss_dssp TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECT--TCCHHHHHHHHHHHHHCTTCCEEEECSC
T ss_pred CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCC--CCCHHHHHHHHHHHhCCCCCCEEEecCC
Confidence 44688877776665443 98888887888899887776542 1123345566777775 5677775544
No 22
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.95 E-value=81 Score=23.50 Aligned_cols=60 Identities=15% Similarity=0.422 Sum_probs=35.3
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHhcCCcCCCCCCccccCCCchHHHHHHHHHHHHHhhCCCCceEEEEEeCCCC
Q 037086 191 WTCVNFSTDLDPDVPFQFCQGLVDVCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDDK 268 (426)
Q Consensus 191 w~vi~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lv~~vl~~~~ 268 (426)
..+++|+. +++.+ +.+.+...+.|+++.. + ..+.++.+.++++.++ -+..+|+++++++.
T Consensus 3 ivivvfst--deetl----rkfkdiikkngfkvrt-----v--rspqelkdsieelvkk-----ynativvvvvddke 62 (134)
T 2l69_A 3 IVIVVFST--DEETL----RKFKDIIKKNGFKVRT-----V--RSPQELKDSIEELVKK-----YNATIVVVVVDDKE 62 (134)
T ss_dssp EEEEECCC--CHHHH----HHHHHHHHHTTCEEEE-----E--CSHHHHHHHHHHHTTC-----CCCEEEEEECSSHH
T ss_pred EEEEEEeC--CHHHH----HHHHHHHHhcCceEEE-----e--cCHHHHHHHHHHHHHH-----hCCeEEEEEEccHH
Confidence 34555654 33344 4455666778877532 1 2456666666666554 46678888877663
No 23
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=26.84 E-value=1.4e+02 Score=27.25 Aligned_cols=56 Identities=27% Similarity=0.297 Sum_probs=33.5
Q ss_pred CCCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecccccccCCHhHHHHHHHhhhc
Q 037086 254 GKQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQPKQASKLSMQYFENVALKINV 311 (426)
Q Consensus 254 ~~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~~t~~k~~~~~~~ni~lKiN~ 311 (426)
+..|.|.++..-+.... |..-|...+.+.||.+..+.... .....-+.+.+.++|.
T Consensus 30 g~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~--~~s~~ell~~i~~lN~ 87 (281)
T 2c2x_A 30 GRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPA--DISTATLNETIDELNA 87 (281)
T ss_dssp TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECT--TCCHHHHHHHHHHHHH
T ss_pred CCCceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCC--CCCHHHHHHHHHHhcC
Confidence 34477777666555433 88877777777888887775532 1122334455666664
No 24
>2l7y_A Putative endo-beta-N-acetylglucosaminidase; putative surface protein, structural protein; NMR {Streptococcus pneumoniae}
Probab=25.23 E-value=1.2e+02 Score=23.04 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=23.0
Q ss_pred ccCCEEEEeecCCce--------eEEEecccCCCCCCeEE
Q 037086 5 LKGIKVVLTHVEYNR--------SYKITGISSQPMSQLMF 36 (426)
Q Consensus 5 l~gl~v~~~~~~~~~--------~~~I~~i~~~~a~~~~F 36 (426)
|.|++|...|..... -|.|+||+...+.+.+.
T Consensus 27 ltGl~v~~~YsDgt~~~~~lt~~~v~VsGfDs~~~G~Qtl 66 (98)
T 2l7y_A 27 LSEGRFAVAYSNDTMEEHSFTDEGVEISGYDAQKTGRQTL 66 (98)
T ss_dssp CCSCEEEEEETTSCEEEEESCCTTSEEESCCTTSCSSEEE
T ss_pred cCCCEEEEEEcCCCEEEEecccCCcEEEccCCCCCCcEEE
Confidence 789999999975432 24888888776665544
No 25
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=25.13 E-value=1.4e+02 Score=27.49 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=22.7
Q ss_pred CCceEEEEEeCCCCCc--hhhHhhhhccccceeeeeecc
Q 037086 255 KQLQLLIIILPDDKGS--YGRIKRVCETELGIVSQCCQP 291 (426)
Q Consensus 255 ~~~~lv~~vl~~~~~~--Y~~iK~~~~~~~gV~TQ~v~~ 291 (426)
..|.|.++++-+.... |...|...+.+.||.+..+..
T Consensus 52 ~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~l 90 (303)
T 4b4u_A 52 RTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIEL 90 (303)
T ss_dssp CCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4566666555544333 777776666677777766654
No 26
>3nqi_A Putative lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.87A {Bacteroides fragilis}
Probab=22.69 E-value=39 Score=30.20 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCC-CCCceEe
Q 037086 405 IRELLIAFNRSTNR-KPESIIF 425 (426)
Q Consensus 405 ~~~~l~~f~~~n~~-~P~~Iii 425 (426)
+..+|.+|+..+|. +|.+|+|
T Consensus 196 Is~~l~aFk~k~G~~~PtkI~V 217 (246)
T 3nqi_A 196 ISQILREYTLKSGQTKPAKITI 217 (246)
T ss_dssp CHHHHHHHHHHHCCSSCSEEEE
T ss_pred HHHHHHHHHHhcCCcCCcEEEE
Confidence 47789999999997 8999987
No 27
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=21.16 E-value=3.1e+02 Score=24.05 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=41.0
Q ss_pred CeEEeeecccCCCCCCCCCCeEEEEEEeeCCCCcc--ceeeEEeecCCchhhhhhhhhccCCCCCCcchhhHHHHHHHHH
Q 037086 335 PTIIFGADVTHPQRGEDSSPSIAAVVASMDWPEVT--KYRGLVSAQARHEEIIQDLYKSIQDPQRGLVHGGMIRELLIAF 412 (426)
Q Consensus 335 ~tmiiG~DVsh~~~~~~~~pSi~avv~S~d~~~~~--~y~~~~~~Q~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~l~~f 412 (426)
|.=|-++|+||-.+ .-+|+|+|-=-| ..+. .|. .+.+... +-.+|. ..|.+++..+....
T Consensus 14 p~rIE~fDiSh~~G----~~~V~smVvf~~-g~p~k~~YR-~f~i~~~--~g~DDy----------a~m~Evl~RR~~r~ 75 (226)
T 3c65_A 14 PRRIEAFDNSNIYG----ADPVSALVVFLD-GKPAKKEYR-KYKVKTV--AGPNDY----------ETMREVVRRRYTRV 75 (226)
T ss_dssp CSEEEEEEEEESSS----SSCEEEEEEEET-TEECGGGCE-EEECCCC--CTTCHH----------HHHHHHHHHHHHHH
T ss_pred CCEEEEEECCccCC----cCceEEEEEEeC-CccChhhCc-eeecCCC--CCCcHH----------HHHHHHHHHHHhhh
Confidence 66788999999764 558888887555 4433 232 2333321 111222 12255555555444
Q ss_pred HHHcCCCCCceEe
Q 037086 413 NRSTNRKPESIIF 425 (426)
Q Consensus 413 ~~~n~~~P~~Iii 425 (426)
.+....+|+-|+|
T Consensus 76 ~~e~~~~PDLili 88 (226)
T 3c65_A 76 LKEGLPLPDLIII 88 (226)
T ss_dssp HHHTCCCCSEEEE
T ss_pred hcccCCCCCEEEE
Confidence 4444479998886
Done!