Query 037087
Match_columns 370
No_of_seqs 136 out of 1613
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:31:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 4.1E-34 8.9E-39 251.1 25.7 216 110-344 1-230 (230)
2 PF08268 FBA_3: F-box associat 99.6 1.2E-14 2.7E-19 115.4 13.9 105 220-330 1-118 (129)
3 PF07734 FBA_1: F-box associat 99.6 2.2E-14 4.8E-19 118.8 15.0 138 220-364 1-164 (164)
4 PLN03215 ascorbic acid mannose 99.3 1.4E-09 3E-14 99.6 23.4 322 9-366 2-373 (373)
5 PF12937 F-box-like: F-box-lik 98.9 5.3E-10 1.1E-14 71.7 0.7 42 11-52 1-42 (47)
6 PHA02713 hypothetical protein; 98.8 1.4E-06 3E-11 86.3 21.3 190 127-351 323-542 (557)
7 PHA03098 kelch-like protein; P 98.6 3.6E-06 7.8E-11 83.3 20.2 192 124-350 312-519 (534)
8 smart00256 FBOX A Receptor for 98.6 5E-09 1.1E-13 65.0 -0.2 39 14-52 1-39 (41)
9 PF00646 F-box: F-box domain; 98.6 9.4E-09 2E-13 66.2 0.8 44 11-54 3-46 (48)
10 PHA02790 Kelch-like protein; P 98.6 5.1E-06 1.1E-10 80.9 20.1 181 127-348 290-476 (480)
11 PHA02713 hypothetical protein; 98.6 5.1E-06 1.1E-10 82.2 19.9 191 127-350 275-497 (557)
12 KOG4441 Proteins containing BT 98.6 5.1E-06 1.1E-10 82.1 18.7 191 124-350 350-554 (571)
13 PLN02153 epithiospecifier prot 98.5 1.2E-05 2.6E-10 74.9 18.8 204 124-351 51-293 (341)
14 PLN02193 nitrile-specifier pro 98.4 6.9E-05 1.5E-09 72.8 22.1 203 124-351 194-419 (470)
15 TIGR03547 muta_rot_YjhT mutatr 98.4 0.00011 2.3E-09 68.7 22.7 202 124-350 30-306 (346)
16 KOG4441 Proteins containing BT 98.4 1.5E-05 3.2E-10 78.8 16.8 191 127-350 304-507 (571)
17 TIGR03548 mutarot_permut cycli 98.3 0.00012 2.7E-09 67.5 20.0 152 188-350 87-287 (323)
18 PRK14131 N-acetylneuraminic ac 98.2 0.00046 9.9E-09 65.2 20.7 151 188-350 105-328 (376)
19 PLN02153 epithiospecifier prot 98.0 0.0012 2.6E-08 61.4 20.8 166 124-308 102-293 (341)
20 PHA03098 kelch-like protein; P 98.0 0.00073 1.6E-08 67.0 19.0 169 110-310 338-522 (534)
21 PHA02790 Kelch-like protein; P 97.9 0.00063 1.4E-08 66.4 16.7 144 188-350 286-431 (480)
22 PLN02193 nitrile-specifier pro 97.8 0.003 6.6E-08 61.4 20.5 154 189-351 193-360 (470)
23 TIGR03548 mutarot_permut cycli 97.7 0.0062 1.3E-07 56.2 19.4 138 124-287 89-232 (323)
24 PRK14131 N-acetylneuraminic ac 97.6 0.013 2.8E-07 55.3 20.1 150 189-347 189-373 (376)
25 KOG4693 Uncharacterized conser 97.5 0.0016 3.4E-08 56.4 11.4 212 124-354 45-288 (392)
26 KOG1230 Protein containing rep 97.5 0.0018 3.9E-08 59.3 12.2 216 124-356 99-354 (521)
27 KOG2120 SCF ubiquitin ligase, 97.5 2.4E-05 5.3E-10 68.7 0.3 40 11-50 98-137 (419)
28 TIGR03547 muta_rot_YjhT mutatr 97.4 0.022 4.7E-07 53.1 19.1 134 189-330 168-327 (346)
29 KOG4693 Uncharacterized conser 97.4 0.0033 7.2E-08 54.4 11.9 135 188-330 156-308 (392)
30 KOG0379 Kelch repeat-containin 96.5 0.13 2.7E-06 50.3 15.9 156 190-353 89-260 (482)
31 KOG2997 F-box protein FBX9 [Ge 96.4 0.00085 1.8E-08 59.4 -0.2 44 11-54 107-155 (366)
32 KOG0281 Beta-TrCP (transducin 95.9 0.0028 6.1E-08 56.7 0.7 43 11-53 75-121 (499)
33 KOG0379 Kelch repeat-containin 95.7 1.1 2.5E-05 43.7 17.9 157 188-353 138-312 (482)
34 PF10282 Lactonase: Lactonase, 95.0 1.6 3.5E-05 40.6 16.2 172 154-350 144-332 (345)
35 PF02191 OLF: Olfactomedin-lik 94.4 1.5 3.3E-05 38.7 13.4 127 215-352 69-213 (250)
36 smart00284 OLF Olfactomedin-li 92.9 5.3 0.00011 35.3 13.9 126 215-351 74-217 (255)
37 KOG1230 Protein containing rep 92.3 2.2 4.9E-05 39.8 11.1 145 189-343 98-276 (521)
38 KOG0274 Cdc4 and related F-box 92.0 14 0.0003 36.7 18.8 43 10-52 107-149 (537)
39 PF08450 SGL: SMP-30/Gluconola 91.6 7.3 0.00016 34.1 13.7 109 220-349 5-129 (246)
40 COG3055 Uncharacterized protei 90.9 4.5 9.9E-05 37.1 11.4 111 188-310 112-266 (381)
41 COG2706 3-carboxymuconate cycl 90.9 13 0.00028 34.1 16.3 156 187-351 165-332 (346)
42 PF08450 SGL: SMP-30/Gluconola 90.6 11 0.00024 32.9 19.9 193 111-352 8-223 (246)
43 TIGR01640 F_box_assoc_1 F-box 90.4 8.3 0.00018 33.4 12.8 120 222-352 3-137 (230)
44 PF07762 DUF1618: Protein of u 90.3 2.2 4.7E-05 33.5 8.1 70 239-311 7-98 (131)
45 PF13360 PQQ_2: PQQ-like domai 89.2 14 0.00029 31.9 17.3 193 113-349 35-237 (238)
46 PF10282 Lactonase: Lactonase, 87.7 23 0.00051 32.8 14.5 115 224-351 154-286 (345)
47 KOG2055 WD40 repeat protein [G 87.6 9.4 0.0002 36.2 11.2 116 220-350 264-382 (514)
48 PF02897 Peptidase_S9_N: Proly 87.4 12 0.00025 35.7 12.6 122 220-350 283-412 (414)
49 KOG4341 F-box protein containi 87.1 0.17 3.7E-06 47.1 -0.2 38 11-48 72-109 (483)
50 PF13964 Kelch_6: Kelch motif 86.4 1.5 3.4E-05 27.7 4.1 36 219-254 6-44 (50)
51 PF06433 Me-amine-dh_H: Methyl 83.9 18 0.00038 33.4 11.0 119 224-347 195-325 (342)
52 PF13360 PQQ_2: PQQ-like domai 82.4 31 0.00066 29.6 16.5 135 190-348 4-146 (238)
53 PF07893 DUF1668: Protein of u 80.9 48 0.001 30.8 13.4 130 115-260 77-224 (342)
54 smart00564 PQQ beta-propeller 79.1 7.5 0.00016 21.7 4.7 26 323-348 5-30 (33)
55 PRK11138 outer membrane biogen 79.0 59 0.0013 30.7 13.8 106 219-348 251-359 (394)
56 PF07646 Kelch_2: Kelch motif; 77.7 6.9 0.00015 24.5 4.6 38 218-255 5-47 (49)
57 COG4257 Vgb Streptogramin lyas 77.5 22 0.00049 31.7 8.9 121 109-258 194-317 (353)
58 smart00612 Kelch Kelch domain. 77.5 3.9 8.4E-05 24.9 3.4 18 188-205 14-31 (47)
59 KOG0310 Conserved WD40 repeat- 76.8 72 0.0016 30.6 13.4 153 188-364 47-207 (487)
60 PF13964 Kelch_6: Kelch motif 76.4 1.9 4.1E-05 27.3 1.7 20 124-144 29-48 (50)
61 PF07893 DUF1668: Protein of u 76.4 41 0.00088 31.3 11.2 56 190-250 200-256 (342)
62 PF01344 Kelch_1: Kelch motif; 75.0 8.4 0.00018 23.6 4.5 36 219-254 6-44 (47)
63 PF05096 Glu_cyclase_2: Glutam 73.9 65 0.0014 28.7 13.3 138 187-349 66-210 (264)
64 PF01011 PQQ: PQQ enzyme repea 73.6 8.7 0.00019 22.6 4.0 26 325-350 1-26 (38)
65 COG3386 Gluconolactonase [Carb 73.4 72 0.0016 29.2 11.8 105 225-347 37-156 (307)
66 PF12458 DUF3686: ATPase invol 73.4 19 0.00042 33.9 8.0 60 226-299 321-384 (448)
67 PF07250 Glyoxal_oxid_N: Glyox 72.9 56 0.0012 28.7 10.5 146 191-349 48-205 (243)
68 PF13418 Kelch_4: Galactose ox 71.7 13 0.00028 23.1 4.8 16 334-349 29-44 (49)
69 KOG0293 WD40 repeat-containing 71.2 95 0.0021 29.4 12.7 71 275-349 403-477 (519)
70 TIGR03300 assembly_YfgL outer 66.4 1.1E+02 0.0025 28.5 14.0 110 220-353 237-350 (377)
71 KOG2106 Uncharacterized conser 66.0 1.4E+02 0.0029 29.2 12.1 68 288-361 387-455 (626)
72 KOG0289 mRNA splicing factor [ 65.9 30 0.00065 32.7 7.5 71 278-352 358-430 (506)
73 COG4257 Vgb Streptogramin lyas 64.4 1.1E+02 0.0024 27.5 14.6 219 112-352 70-315 (353)
74 TIGR03300 assembly_YfgL outer 63.3 1.3E+02 0.0028 28.1 15.2 132 190-348 76-214 (377)
75 TIGR03075 PQQ_enz_alc_DH PQQ-d 62.9 1.6E+02 0.0035 29.2 12.7 116 219-349 64-196 (527)
76 TIGR03074 PQQ_membr_DH membran 60.6 1.5E+02 0.0033 31.0 12.3 28 219-250 189-216 (764)
77 KOG4152 Host cell transcriptio 59.7 1.8E+02 0.0039 28.5 14.1 202 124-351 58-311 (830)
78 PF13570 PQQ_3: PQQ-like domai 58.8 17 0.00037 21.5 3.3 21 323-343 20-40 (40)
79 PRK11028 6-phosphogluconolacto 58.7 1.5E+02 0.0031 27.1 16.8 120 220-350 181-314 (330)
80 KOG0647 mRNA export protein (c 58.5 54 0.0012 29.6 7.4 65 289-356 48-116 (347)
81 PRK11028 6-phosphogluconolacto 57.0 1.5E+02 0.0034 26.9 14.8 69 278-349 136-214 (330)
82 COG2706 3-carboxymuconate cycl 56.9 1.6E+02 0.0036 27.2 14.4 77 275-352 198-286 (346)
83 PF13013 F-box-like_2: F-box-l 56.9 4 8.6E-05 30.9 0.3 30 10-39 21-50 (109)
84 KOG0279 G protein beta subunit 55.7 61 0.0013 28.9 7.2 71 275-351 200-272 (315)
85 PF03088 Str_synth: Strictosid 55.7 24 0.00052 25.6 4.1 17 333-349 36-52 (89)
86 KOG0291 WD40-repeat-containing 55.4 1.5E+02 0.0033 30.4 10.6 32 318-349 440-473 (893)
87 TIGR02658 TTQ_MADH_Hv methylam 55.2 1.8E+02 0.004 27.2 13.1 121 222-349 203-338 (352)
88 TIGR03866 PQQ_ABC_repeats PQQ- 54.1 1.5E+02 0.0033 25.9 13.9 122 223-355 166-293 (300)
89 KOG3545 Olfactomedin and relat 53.6 1.6E+02 0.0034 26.0 10.8 125 217-352 70-212 (249)
90 KOG2502 Tub family proteins [G 53.4 10 0.00023 34.6 2.3 39 9-47 43-89 (355)
91 KOG3926 F-box proteins [Amino 53.4 7.9 0.00017 34.1 1.5 41 8-48 199-240 (332)
92 cd01206 Homer Homer type EVH1 51.4 34 0.00074 25.8 4.3 37 127-174 14-51 (111)
93 cd01207 Ena-Vasp Enabled-VASP- 48.4 41 0.0009 25.5 4.5 40 127-174 12-51 (111)
94 PLN02772 guanylate kinase 46.1 1.1E+02 0.0025 29.0 8.0 72 219-300 29-107 (398)
95 KOG0291 WD40-repeat-containing 45.3 3.7E+02 0.008 27.8 11.6 118 220-342 251-380 (893)
96 COG1520 FOG: WD40-like repeat 45.0 2.6E+02 0.0057 26.0 15.2 137 189-349 35-178 (370)
97 KOG1274 WD40 repeat protein [G 43.8 4.2E+02 0.009 28.0 16.5 57 289-345 158-221 (933)
98 PF05096 Glu_cyclase_2: Glutam 42.7 2.5E+02 0.0054 25.1 15.0 113 223-352 54-168 (264)
99 PRK11138 outer membrane biogen 42.6 3E+02 0.0064 25.9 15.0 102 220-341 290-393 (394)
100 PLN00181 protein SPA1-RELATED; 42.4 4.3E+02 0.0093 27.7 21.4 66 277-344 670-740 (793)
101 PF13415 Kelch_3: Galactose ox 40.7 24 0.00053 21.9 2.0 20 124-144 20-39 (49)
102 KOG4547 WD40 repeat-containing 40.4 3.8E+02 0.0082 26.5 13.9 114 238-364 80-195 (541)
103 COG3055 Uncharacterized protei 39.6 3.2E+02 0.007 25.5 12.7 133 187-330 194-355 (381)
104 PRK04043 tolB translocation pr 38.9 3.6E+02 0.0078 25.9 11.7 101 238-353 213-320 (419)
105 KOG0649 WD40 repeat protein [G 38.8 2.8E+02 0.006 24.5 8.9 28 323-350 125-152 (325)
106 PF15525 DUF4652: Domain of un 38.4 1.9E+02 0.004 24.4 7.1 57 294-351 89-157 (200)
107 PF08268 FBA_3: F-box associat 36.2 77 0.0017 24.5 4.7 32 321-352 2-38 (129)
108 KOG0772 Uncharacterized conser 35.1 3E+02 0.0065 27.1 8.8 60 289-352 384-456 (641)
109 KOG1963 WD40 repeat protein [G 34.8 1.3E+02 0.0027 31.2 6.7 57 288-344 476-540 (792)
110 PF06058 DCP1: Dcp1-like decap 34.2 1.2E+02 0.0026 23.5 5.3 29 327-355 22-50 (122)
111 KOG0295 WD40 repeat-containing 33.3 4E+02 0.0086 25.0 9.0 59 289-349 312-371 (406)
112 KOG0315 G-protein beta subunit 32.9 1.9E+02 0.0042 25.5 6.7 66 276-345 92-157 (311)
113 COG4946 Uncharacterized protei 32.7 4.8E+02 0.01 25.5 10.5 28 324-352 278-305 (668)
114 KOG0301 Phospholipase A2-activ 32.7 2.6E+02 0.0056 28.5 8.3 61 276-342 228-288 (745)
115 PF00400 WD40: WD domain, G-be 32.3 99 0.0021 17.4 6.0 38 303-340 1-39 (39)
116 PF07734 FBA_1: F-box associat 32.3 1.1E+02 0.0024 24.8 5.2 11 191-201 23-33 (164)
117 PLN02772 guanylate kinase 31.9 1.9E+02 0.004 27.6 7.1 73 274-346 30-112 (398)
118 PF00930 DPPIV_N: Dipeptidyl p 31.7 4E+02 0.0087 24.7 9.5 108 237-349 157-275 (353)
119 cd01262 PH_PDK1 3-Phosphoinosi 30.5 1.6E+02 0.0035 21.4 5.0 24 324-347 16-39 (89)
120 KOG2321 WD40 repeat protein [G 29.5 4.2E+02 0.0091 26.5 9.0 105 227-346 148-262 (703)
121 KOG0315 G-protein beta subunit 28.7 4.2E+02 0.0091 23.5 12.7 107 239-356 147-259 (311)
122 KOG0649 WD40 repeat protein [G 28.3 4.2E+02 0.0092 23.4 12.0 103 225-346 127-239 (325)
123 KOG0316 Conserved WD40 repeat- 27.9 3.3E+02 0.0072 23.9 7.2 74 276-352 26-100 (307)
124 KOG0294 WD40 repeat-containing 27.3 4.9E+02 0.011 23.9 10.6 108 220-345 48-160 (362)
125 COG4946 Uncharacterized protei 26.2 6.3E+02 0.014 24.7 11.7 112 220-350 327-439 (668)
126 PLN02919 haloacid dehalogenase 26.0 9.1E+02 0.02 26.5 14.8 122 224-350 694-841 (1057)
127 PTZ00420 coronin; Provisional 25.6 7.1E+02 0.015 25.1 15.0 60 291-350 240-301 (568)
128 KOG0266 WD40 repeat-containing 24.5 6.5E+02 0.014 24.4 12.7 73 276-352 212-287 (456)
129 KOG0293 WD40 repeat-containing 23.5 6.6E+02 0.014 24.1 8.8 66 275-346 319-388 (519)
130 PRK05137 tolB translocation pr 22.9 6.7E+02 0.015 23.9 19.1 185 124-351 227-421 (435)
131 PF01436 NHL: NHL repeat; Int 22.9 1.4E+02 0.003 16.0 3.9 15 318-332 6-20 (28)
132 PRK13259 regulatory protein Sp 22.8 87 0.0019 23.0 2.5 31 108-138 35-70 (94)
133 COG3823 Glutamine cyclotransfe 22.5 2.8E+02 0.006 24.0 5.7 78 274-354 51-132 (262)
134 cd00216 PQQ_DH Dehydrogenases 22.4 7.4E+02 0.016 24.2 12.5 27 219-249 56-82 (488)
135 TIGR03032 conserved hypothetic 21.6 6.5E+02 0.014 23.3 8.7 96 215-326 203-327 (335)
136 KOG4378 Nuclear protein COP1 [ 21.6 3.1E+02 0.0066 26.9 6.4 55 288-347 184-244 (673)
137 PF10902 DUF2693: Protein of u 21.3 1.2E+02 0.0026 21.7 2.9 22 333-354 48-69 (83)
138 KOG1310 WD40 repeat protein [G 21.3 5.6E+02 0.012 25.6 8.1 112 112-247 59-179 (758)
139 cd00200 WD40 WD40 domain, foun 21.2 4.9E+02 0.011 21.7 13.1 55 289-345 71-126 (289)
140 KOG0292 Vesicle coat complex C 21.0 6.9E+02 0.015 26.7 9.0 81 276-357 213-296 (1202)
141 KOG2048 WD40 repeat protein [G 20.9 8E+02 0.017 25.0 9.3 66 289-355 45-112 (691)
142 PLN02919 haloacid dehalogenase 20.8 1.1E+03 0.025 25.8 14.5 69 276-346 812-892 (1057)
143 KOG0639 Transducin-like enhanc 20.5 1.6E+02 0.0034 28.8 4.3 70 276-347 474-544 (705)
144 KOG2106 Uncharacterized conser 20.2 8.5E+02 0.018 24.1 12.8 54 301-354 185-243 (626)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=4.1e-34 Score=251.14 Aligned_cols=216 Identities=25% Similarity=0.382 Sum_probs=160.9
Q ss_pred eeeecceEEEccCCCeeEEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCC
Q 037087 110 TGPYDGIFLLLGDHTHINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFS 189 (370)
Q Consensus 110 ~~s~nGLl~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 189 (370)
++|||||||+.....+ +||||+||+++.||+++.... ......++||||+.+++||||++...... ....
T Consensus 1 ~~sCnGLlc~~~~~~~-~V~NP~T~~~~~LP~~~~~~~---~~~~~~~~~G~d~~~~~YKVv~~~~~~~~------~~~~ 70 (230)
T TIGR01640 1 VVPCDGLICFSYGKRL-VVWNPSTGQSRWLPTPKSRRS---NKESDTYFLGYDPIEKQYKVLCFSDRSGN------RNQS 70 (230)
T ss_pred CcccceEEEEecCCcE-EEECCCCCCEEecCCCCCccc---ccccceEEEeecccCCcEEEEEEEeecCC------CCCc
Confidence 4799999999987777 999999999999997654211 11122689999999999999999743111 1357
Q ss_pred cEEEEEcCCCceecCCCCCCCccccccCCcceEEccEEEEEEeCCC-Cc-cEEEEEECCCccee-EeCCCCCCCcccccc
Q 037087 190 PAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPD-YY-KEILKFSMTDEVFQ-VIQGPNIPQLLNYYE 266 (370)
Q Consensus 190 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~-~~il~fD~~~~~~~-~i~~P~~~~~~~~~~ 266 (370)
.++||++++++||..... .+.. .....+|++||++||++.... .. ..|++||+++|+|+ .+++|.... . ..
T Consensus 71 ~~~Vys~~~~~Wr~~~~~-~~~~--~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~--~-~~ 144 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECS-PPHH--PLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNS--D-SV 144 (230)
T ss_pred cEEEEEeCCCCccccccC-CCCc--cccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccc--c-cc
Confidence 899999999999995422 1221 222239999999999987653 22 38999999999999 589887532 1 11
Q ss_pred ccCCCceEEEECCeEEEEEecCCCceEEEEEecC---CceeEEEEecC--Ccce---eeeeEEeeCCeEEEEeCC--Ce-
Q 037087 267 SAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKG---RSWTKQFTFGP--FIET---YQPLTFWRKGEFLLQSSD--KR- 335 (370)
Q Consensus 267 ~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~---~~W~~~~~i~~--~~~~---~~~~~~~~~~~ll~~~~~--~~- 335 (370)
.... |++++|+||++........++||+|++ ..|+++++|+. ...+ ..|+++.++|+|++.... +.
T Consensus 145 ~~~~---L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~ 221 (230)
T TIGR01640 145 DYLS---LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFY 221 (230)
T ss_pred cceE---EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceE
Confidence 2345 899999999999854445699999997 67999999973 2222 348888899999987553 34
Q ss_pred EEEEECCCC
Q 037087 336 LVLYDSTYE 344 (370)
Q Consensus 336 ~~~yd~~~~ 344 (370)
+++||++++
T Consensus 222 ~~~y~~~~~ 230 (230)
T TIGR01640 222 IFYYNVGEN 230 (230)
T ss_pred EEEEeccCC
Confidence 999999875
No 2
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.62 E-value=1.2e-14 Score=115.36 Aligned_cols=105 Identities=21% Similarity=0.452 Sum_probs=80.1
Q ss_pred ceEEccEEEEEEeC-CCCccEEEEEECCCcceeEeCCCCCCCccccccccCCCceEEEECCeEEEEEecCC--CceEEEE
Q 037087 220 DVYLNGFCYWVVHR-PDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEM--AHSFDLW 296 (370)
Q Consensus 220 ~v~~~G~lywl~~~-~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~~~--~~~l~IW 296 (370)
++++||++||++.. ......|++||+++|+|+.+++|... ........ |++++|+||++..... ...++||
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~---~~~~~~~~---L~~~~G~L~~v~~~~~~~~~~~~iW 74 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDP---YSSDCSST---LIEYKGKLALVSYNDQGEPDSIDIW 74 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeee---ccccCccE---EEEeCCeEEEEEecCCCCcceEEEE
Confidence 58999999999987 33467999999999999999999211 11123345 9999999999988533 2479999
Q ss_pred EecC---CceeEEEEecCCc-------ceeeeeEEeeCCeEEEE
Q 037087 297 IMKG---RSWTKQFTFGPFI-------ETYQPLTFWRKGEFLLQ 330 (370)
Q Consensus 297 ~l~~---~~W~~~~~i~~~~-------~~~~~~~~~~~~~ll~~ 330 (370)
+|+| ++|++++.+-+.. ....++++.++|+|++.
T Consensus 75 vLeD~~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 75 VLEDYEKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred EeeccccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 9999 8999987754321 23567777788888776
No 3
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.61 E-value=2.2e-14 Score=118.78 Aligned_cols=138 Identities=20% Similarity=0.346 Sum_probs=97.8
Q ss_pred ceEEccEEEEEEeCCCCcc--EEEEEECCCcce-eEeCCCCCCCccccccccCCCceEE-EECCeEEEEEecCCCceEEE
Q 037087 220 DVYLNGFCYWVVHRPDYYK--EILKFSMTDEVF-QVIQGPNIPQLLNYYESAMRPWMLG-IYDDYLSILYSEEMAHSFDL 295 (370)
Q Consensus 220 ~v~~~G~lywl~~~~~~~~--~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l~-~~~g~L~~~~~~~~~~~l~I 295 (370)
+|++||++||++....... .|++||+++|+| ..+++|.... . ...... |. +.+|+||++........++|
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~--~-~~~~~~---L~~v~~~~L~~~~~~~~~~~~~I 74 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCND--D-DDDSVS---LSVVRGDCLCVLYQCDETSKIEI 74 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccC--c-cCCEEE---EEEecCCEEEEEEeccCCccEEE
Confidence 5899999999998875433 899999999999 8899998543 1 112334 64 44789999986556567999
Q ss_pred EEecC-----CceeEEEEecCCcc--e-----eeeeEEeeCCeEEEEeC--C-----CeEEEEECCCCcEEEEEEecce-
Q 037087 296 WIMKG-----RSWTKQFTFGPFIE--T-----YQPLTFWRKGEFLLQSS--D-----KRLVLYDSTYEEMRDLGITGLW- 355 (370)
Q Consensus 296 W~l~~-----~~W~~~~~i~~~~~--~-----~~~~~~~~~~~ll~~~~--~-----~~~~~yd~~~~~~~~v~~~~~~- 355 (370)
|+|++ .+|++.++|+.... . ...+.+.+++++++... . ..+++|+ +++..+++.+....
T Consensus 75 Wvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~ 153 (164)
T PF07734_consen 75 WVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSS 153 (164)
T ss_pred EEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCC
Confidence 99995 69999999984321 1 12344455667666521 1 4578888 77888888885432
Q ss_pred e--eEEEeeec
Q 037087 356 F--SVNILKES 364 (370)
Q Consensus 356 ~--~~~~~~~s 364 (370)
. .+..|+||
T Consensus 154 ~~~~~~~YvpS 164 (164)
T PF07734_consen 154 CWPSICNYVPS 164 (164)
T ss_pred CCCCEEEECCC
Confidence 2 25888887
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.30 E-value=1.4e-09 Score=99.58 Aligned_cols=322 Identities=12% Similarity=0.097 Sum_probs=157.7
Q ss_pred cCCCCCcHHHHHHHhccCC-ccccceeeecccchhhhcCChhhhHHhhhcCCCCcEEEEEecCCCCCCCCCCCccceEEE
Q 037087 9 TGYGDLSDDVMVETLSRLP-VKSLMRFRCVCKSWYCLVKDPNFIYKHLKRDNSMRLMIYCTYKNPYDTDPFNDLITYFSI 87 (370)
Q Consensus 9 ~~~~~LP~Dll~eIL~rLp-~~sl~r~~~VcK~W~~li~~p~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (370)
+.+++||+||+..|..||| .-+++|+|+|||+||+.+.... +... .++.|+++. ....+..|. ......
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~~~-~~~~~~~~~---~~~~~~~~~---~~~~~~ 71 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KKNP-FRTRPLILF---NPINPSETL---TDDRSY 71 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---ccCC-ccccccccc---CcccCCCCc---cccccc
Confidence 4688999999999999998 5599999999999999877421 0000 111233333 100000011 000000
Q ss_pred ecC-CCccccc-ccCCCCCCCCceeeeecceEEEccC----CCeeEEEecccccccccCCCccCCCCCccc--ccceEEE
Q 037087 88 FPD-KTLTDLH-IQDLEPTMKGNTTGPYDGIFLLLGD----HTHINLWNVSMDEYRVVPRYKVRLPCDTRA--HSSYYGL 159 (370)
Q Consensus 88 ~~~-~~~~~~~-~~~~~~~~~~~~~~s~nGLl~~~~~----~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~--~~~~~~~ 159 (370)
... ...+... .-.+.. ..++..|.|.-.+. .+. .+.||.++....+|+....... +.. ....+.+
T Consensus 72 ~~~~~~~ls~~~~~r~~~-----~~~~~~~WLik~~~~~~~~~~-~Ll~PLsr~~~~~~~~~lnll~-f~v~ei~~~y~l 144 (373)
T PLN03215 72 ISRPGAFLSRAAFFRVTL-----SSSPSKGWLIKSDMDVNSGRF-HLLNPLSRLPLRHSSESVDLLE-FTVSEIREAYQV 144 (373)
T ss_pred cccccceeeeeEEEEeec-----CCCCCCCcEEEEeccccCCcc-EecCccccCccCCCCccceeee-eEEEEccceEEE
Confidence 000 0000000 000000 12356787776543 366 9999999998877753221110 000 0011111
Q ss_pred -eecCC---CCceEEEEEEEEeecCCcCCCCCCCcEEEEEc------CCCceecCCCCCCCccccccCCcceEEccEEEE
Q 037087 160 -GVDPV---ANDFKLVLVLTLWDENRQWTYDEFSPAAVYNF------TTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYW 229 (370)
Q Consensus 160 -~~d~~---~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss------~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lyw 229 (370)
+.+.. ...|+-+.+......+. .....+-|+.. +.++|..... .. ..-.+-|+.+|.+|-
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vl~i~~~g~l~~w~~~~Wt~l~~---~~---~~~~DIi~~kGkfYA 214 (373)
T PLN03215 145 LDWAKRRETRPGYQRSALVKVKEGDN----HRDGVLGIGRDGKINYWDGNVLKALKQ---MG---YHFSDIIVHKGQTYA 214 (373)
T ss_pred EecccccccccceeEEEEEEeecCCC----cceEEEEEeecCcEeeecCCeeeEccC---CC---ceeeEEEEECCEEEE
Confidence 11100 00132111111110110 00011122211 1367776421 11 112238999999999
Q ss_pred EEeCCCCccEEEEEECCCcceeEeCCCCCCCcc-ccccccCCCceEEEECCeEEEEEec-C--------------CCceE
Q 037087 230 VVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLL-NYYESAMRPWMLGIYDDYLSILYSE-E--------------MAHSF 293 (370)
Q Consensus 230 l~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~-~~~~~~~~~~~l~~~~g~L~~~~~~-~--------------~~~~l 293 (370)
+...+ .+.++|..- +.+.+..+...... ........ |++..|+|.++... . ....+
T Consensus 215 vD~~G----~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~y---LVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f 286 (373)
T PLN03215 215 LDSIG----IVYWINSDL-EFSRFGTSLDENITDGCWTGDRR---FVECCGELYIVERLPKESTWKRKADGFEYSRTVGF 286 (373)
T ss_pred EcCCC----eEEEEecCC-ceeeecceecccccCCcccCcee---EEEECCEEEEEEEEccCcccccccccccccceeEE
Confidence 85544 466777432 12222211110000 01112234 99999999998863 1 12478
Q ss_pred EEEEecC--CceeEEEEecCCcce---eeeeEE-------eeCCeEEEEeCCCeEEEEECCCCcEEEEEEe---cceeeE
Q 037087 294 DLWIMKG--RSWTKQFTFGPFIET---YQPLTF-------WRKGEFLLQSSDKRLVLYDSTYEEMRDLGIT---GLWFSV 358 (370)
Q Consensus 294 ~IW~l~~--~~W~~~~~i~~~~~~---~~~~~~-------~~~~~ll~~~~~~~~~~yd~~~~~~~~v~~~---~~~~~~ 358 (370)
+|+.++. ..|.++.+++-...+ ...+.+ .+++-|+|. .+....+||+++++...+... ...+++
T Consensus 287 ~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt-dd~~~~v~~~~dg~~~~~~~~~~~~~~~~~ 365 (373)
T PLN03215 287 KVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT-EDTMPKVFKLDNGNGSSIETTISESSQSSF 365 (373)
T ss_pred EEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE-CCCcceEEECCCCCccceEeecCccccchh
Confidence 9999987 899998887521100 011111 124556676 455688999999997766543 334566
Q ss_pred EEeeeccc
Q 037087 359 NILKESLI 366 (370)
Q Consensus 359 ~~~~~sl~ 366 (370)
-+|++|++
T Consensus 366 ~~~~~~~~ 373 (373)
T PLN03215 366 EMFVPSFL 373 (373)
T ss_pred eeeccccC
Confidence 77777754
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.87 E-value=5.3e-10 Score=71.69 Aligned_cols=42 Identities=26% Similarity=0.604 Sum_probs=36.2
Q ss_pred CCCCcHHHHHHHhccCCccccceeeecccchhhhcCChhhhH
Q 037087 11 YGDLSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNFIY 52 (370)
Q Consensus 11 ~~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~li~~p~F~~ 52 (370)
+..||+|++.+||+.|+++++.+++.|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 468999999999999999999999999999999998885544
No 6
>PHA02713 hypothetical protein; Provisional
Probab=98.76 E-value=1.4e-06 Score=86.25 Aligned_cols=190 Identities=8% Similarity=0.071 Sum_probs=118.6
Q ss_pred EEEecccccccccCCCccCCCCCcccccceEEE-eecCCCCceEEEEEEEEeecCCcCCCCCCCcEEEEEcCCCceecCC
Q 037087 127 NLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGL-GVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRDLG 205 (370)
Q Consensus 127 ~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~-~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 205 (370)
+..||.+++|..+|+++.. ...++. .++ =+|+.+++. .. ......++.|+..+++|....
T Consensus 323 ~~Yd~~~n~W~~~~~m~~~--------R~~~~~~~~~-----g~IYviGG~--~~----~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 323 YKINIENKIHVELPPMIKN--------RCRFSLAVID-----DTIYAIGGQ--NG----TNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred EEEECCCCeEeeCCCCcch--------hhceeEEEEC-----CEEEEECCc--CC----CCCCceEEEEECCCCeEEECC
Confidence 8899999999999987643 111122 222 256666531 11 112457999999999999855
Q ss_pred CCCCCccccccCCcceEEccEEEEEEeCCCC--------------------ccEEEEEECCCcceeEeC-CCCCCCcccc
Q 037087 206 GFPMSRHYRFEGADDVYLNGFCYWVVHRPDY--------------------YKEILKFSMTDEVFQVIQ-GPNIPQLLNY 264 (370)
Q Consensus 206 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--------------------~~~il~fD~~~~~~~~i~-~P~~~~~~~~ 264 (370)
++|.. ......+.++|.+|-+++.... ...+.+||+.+++|+.++ +|...
T Consensus 384 --~mp~~--r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r----- 454 (557)
T PHA02713 384 --DMPIA--LSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT----- 454 (557)
T ss_pred --CCCcc--cccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc-----
Confidence 34331 2233478889999998764311 246899999999998874 23321
Q ss_pred ccccCCCceEEEECCeEEEEEecCCC----ceEEEEEecC-CceeEEEEecCCcceeeeeEEeeCCeEEEEeC-CC--eE
Q 037087 265 YESAMRPWMLGIYDDYLSILYSEEMA----HSFDLWIMKG-RSWTKQFTFGPFIETYQPLTFWRKGEFLLQSS-DK--RL 336 (370)
Q Consensus 265 ~~~~~~~~~l~~~~g~L~~~~~~~~~----~~l~IW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~-~~--~~ 336 (370)
.... +++.+|+|+++...... ..++..-.+. ..|+....++- +.....+++ -+|.|++... ++ .+
T Consensus 455 --~~~~---~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-~r~~~~~~~-~~~~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 455 --IRPG---VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES-RLSALHTIL-HDNTIMMLHCYESYMLQ 527 (557)
T ss_pred --ccCc---EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc-ccccceeEE-ECCEEEEEeeecceeeh
Confidence 2234 78999999999863211 1233333333 47998776532 111222222 2778877643 22 58
Q ss_pred EEEECCCCcEEEEEE
Q 037087 337 VLYDSTYEEMRDLGI 351 (370)
Q Consensus 337 ~~yd~~~~~~~~v~~ 351 (370)
-.||++|++|..+.=
T Consensus 528 e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 528 DTFNVYTYEWNHICH 542 (557)
T ss_pred hhcCcccccccchhh
Confidence 899999999998753
No 7
>PHA03098 kelch-like protein; Provisional
Probab=98.64 E-value=3.6e-06 Score=83.33 Aligned_cols=192 Identities=9% Similarity=0.069 Sum_probs=118.3
Q ss_pred CeeEEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCCcEEEEEcCCCceec
Q 037087 124 THINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRD 203 (370)
Q Consensus 124 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~ 203 (370)
.. +..||.|++|..+|+.+... ....... .+ =+++.+++.. . ......+++|+..+++|+.
T Consensus 312 ~v-~~yd~~~~~W~~~~~~~~~R-----~~~~~~~--~~-----~~lyv~GG~~-~-----~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 312 SV-VSYDTKTKSWNKVPELIYPR-----KNPGVTV--FN-----NRIYVIGGIY-N-----SISLNTVESWKPGESKWRE 372 (534)
T ss_pred cE-EEEeCCCCeeeECCCCCccc-----ccceEEE--EC-----CEEEEEeCCC-C-----CEecceEEEEcCCCCceee
Confidence 45 89999999999999876421 1111111 11 1355554311 1 1235678999999999998
Q ss_pred CCCCCCCccccccCCcceEEccEEEEEEeCCC---CccEEEEEECCCcceeEeC-CCCCCCccccccccCCCceEEEECC
Q 037087 204 LGGFPMSRHYRFEGADDVYLNGFCYWVVHRPD---YYKEILKFSMTDEVFQVIQ-GPNIPQLLNYYESAMRPWMLGIYDD 279 (370)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~~g 279 (370)
....+.+. ....++.++|.+|-+++... ....+..||+.+++|..+. +|.... ... .+..+|
T Consensus 373 ~~~lp~~r----~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-------~~~---~~~~~~ 438 (534)
T PHA03098 373 EPPLIFPR----YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-------GGC---AIYHDG 438 (534)
T ss_pred CCCcCcCC----ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-------Cce---EEEECC
Confidence 54322222 22336788999999876421 1246899999999998875 343211 223 678899
Q ss_pred eEEEEEecCCCc----eEEEEEecC--CceeEEEEecCCcceeeeeEEeeCCeEEEEeC------CCeEEEEECCCCcEE
Q 037087 280 YLSILYSEEMAH----SFDLWIMKG--RSWTKQFTFGPFIETYQPLTFWRKGEFLLQSS------DKRLVLYDSTYEEMR 347 (370)
Q Consensus 280 ~L~~~~~~~~~~----~l~IW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~------~~~~~~yd~~~~~~~ 347 (370)
+|+++....... .-.+|..+- ..|..+-.+.. +.....+++ -++.|++... ...+..||+++++|+
T Consensus 439 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 439 KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF-PRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc-ccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 999888632111 123676665 88998654321 111222222 2677777632 246899999999998
Q ss_pred EEE
Q 037087 348 DLG 350 (370)
Q Consensus 348 ~v~ 350 (370)
.+.
T Consensus 517 ~~~ 519 (534)
T PHA03098 517 LFC 519 (534)
T ss_pred ecC
Confidence 875
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.63 E-value=5e-09 Score=65.03 Aligned_cols=39 Identities=38% Similarity=0.808 Sum_probs=36.7
Q ss_pred CcHHHHHHHhccCCccccceeeecccchhhhcCChhhhH
Q 037087 14 LSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNFIY 52 (370)
Q Consensus 14 LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~li~~p~F~~ 52 (370)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988753
No 9
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.62 E-value=9.4e-09 Score=66.22 Aligned_cols=44 Identities=39% Similarity=0.607 Sum_probs=37.2
Q ss_pred CCCCcHHHHHHHhccCCccccceeeecccchhhhcCChhhhHHh
Q 037087 11 YGDLSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNFIYKH 54 (370)
Q Consensus 11 ~~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~li~~p~F~~~~ 54 (370)
+.+||+|++.+||.+|+.+++++++.|||+|+.++.++.+...+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 35799999999999999999999999999999999999886554
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=98.62 E-value=5.1e-06 Score=80.87 Aligned_cols=181 Identities=11% Similarity=0.082 Sum_probs=113.9
Q ss_pred EEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCCcEEEEEcCCCceecCCC
Q 037087 127 NLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRDLGG 206 (370)
Q Consensus 127 ~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~ 206 (370)
...||.+++|..+|+++... .... +...+ =+|+.+++. . ....++.|+..+++|...+
T Consensus 290 ~~Ydp~~~~W~~~~~m~~~r-----~~~~--~v~~~-----~~iYviGG~---~------~~~sve~ydp~~n~W~~~~- 347 (480)
T PHA02790 290 IAVNYISNNWIPIPPMNSPR-----LYAS--GVPAN-----NKLYVVGGL---P------NPTSVERWFHGDAAWVNMP- 347 (480)
T ss_pred EEEECCCCEEEECCCCCchh-----hcce--EEEEC-----CEEEEECCc---C------CCCceEEEECCCCeEEECC-
Confidence 67899999999999876421 1111 11112 255555431 1 1356899999999999855
Q ss_pred CCCCccccccCCcceEEccEEEEEEeCCCCccEEEEEECCCcceeEeCCCCCCCccccccccCCCceEEEECCeEEEEEe
Q 037087 207 FPMSRHYRFEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYS 286 (370)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~ 286 (370)
+++.. ......+.++|.+|-+++.......+..||+.+++|+.++.++... .... .+..+|+|+++..
T Consensus 348 -~l~~~--r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r------~~~~---~~~~~~~IYv~GG 415 (480)
T PHA02790 348 -SLLKP--RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH------YKSC---ALVFGRRLFLVGR 415 (480)
T ss_pred -CCCCC--CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc------ccce---EEEECCEEEEECC
Confidence 34331 2233478899999999775433346788999999999875332211 1223 6789999999874
Q ss_pred cCCCceEEEEEecCCceeEEEEecCCcceeeeeEEeeCCeEEEEeC------CCeEEEEECCCCcEEE
Q 037087 287 EEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSS------DKRLVLYDSTYEEMRD 348 (370)
Q Consensus 287 ~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~------~~~~~~yd~~~~~~~~ 348 (370)
..++.-.+...|.....+.. +.....+++ -+|+|++... ...+-.||+++++|+-
T Consensus 416 -----~~e~ydp~~~~W~~~~~m~~-~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 416 -----NAEFYCESSNTWTLIDDPIY-PRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred -----ceEEecCCCCcEeEcCCCCC-CccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCCeEEe
Confidence 23444444488997765421 112222332 3778877633 1358899999999974
No 11
>PHA02713 hypothetical protein; Provisional
Probab=98.60 E-value=5.1e-06 Score=82.24 Aligned_cols=191 Identities=12% Similarity=0.134 Sum_probs=116.3
Q ss_pred EEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCCcEEEEEcCCCceecCCC
Q 037087 127 NLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRDLGG 206 (370)
Q Consensus 127 ~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~ 206 (370)
...||.+++|..+++.+... ..++.+.- + =+|+.+++.... ......++.|+..++.|...+
T Consensus 275 ~~yd~~~~~W~~l~~mp~~r--------~~~~~a~l---~-~~IYviGG~~~~-----~~~~~~v~~Yd~~~n~W~~~~- 336 (557)
T PHA02713 275 LVYNINTMEYSVISTIPNHI--------INYASAIV---D-NEIIIAGGYNFN-----NPSLNKVYKINIENKIHVELP- 336 (557)
T ss_pred EEEeCCCCeEEECCCCCccc--------cceEEEEE---C-CEEEEEcCCCCC-----CCccceEEEEECCCCeEeeCC-
Confidence 77899999999998876531 11111110 1 255555431001 112467899999999998754
Q ss_pred CCCCccccccCCcceEEccEEEEEEeCCCC--ccEEEEEECCCcceeEeC-CCCCCCccccccccCCCceEEEECCeEEE
Q 037087 207 FPMSRHYRFEGADDVYLNGFCYWVVHRPDY--YKEILKFSMTDEVFQVIQ-GPNIPQLLNYYESAMRPWMLGIYDDYLSI 283 (370)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~~g~L~~ 283 (370)
+++.. ......+.++|.+|-+++.... ...+-.||+.+++|..++ +|.... ... .+.++|+|++
T Consensus 337 -~m~~~--R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~-------~~~---~~~~~g~IYv 403 (557)
T PHA02713 337 -PMIKN--RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS-------SYG---MCVLDQYIYI 403 (557)
T ss_pred -CCcch--hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc-------ccc---EEEECCEEEE
Confidence 34431 2233488899999999876422 246889999999999875 343222 223 6789999999
Q ss_pred EEecCCCc-------------------eEEEEEecC--CceeEEEEecCCcceeeeeEEeeCCeEEEEeCC-------Ce
Q 037087 284 LYSEEMAH-------------------SFDLWIMKG--RSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSD-------KR 335 (370)
Q Consensus 284 ~~~~~~~~-------------------~l~IW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~-------~~ 335 (370)
+....... .-.+...+- ..|..+..+.... ....++ .-+|.|++.... ..
T Consensus 404 iGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-~~~~~~-~~~~~IYv~GG~~~~~~~~~~ 481 (557)
T PHA02713 404 IGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-IRPGVV-SHKDDIYVVCDIKDEKNVKTC 481 (557)
T ss_pred EeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc-ccCcEE-EECCEEEEEeCCCCCCcccee
Confidence 98632110 112444443 7898765442111 122223 336788776321 23
Q ss_pred EEEEECCC-CcEEEEE
Q 037087 336 LVLYDSTY-EEMRDLG 350 (370)
Q Consensus 336 ~~~yd~~~-~~~~~v~ 350 (370)
+..||+++ ++|+.+.
T Consensus 482 ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 482 IFRYNTNTYNGWELIT 497 (557)
T ss_pred EEEecCCCCCCeeEcc
Confidence 67999999 8999875
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.57 E-value=5.1e-06 Score=82.13 Aligned_cols=191 Identities=13% Similarity=0.158 Sum_probs=124.8
Q ss_pred CeeEEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCCcEEEEEcCCCceec
Q 037087 124 THINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRD 203 (370)
Q Consensus 124 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~ 203 (370)
.. ...||.+++|..+|++... ...++.+. -..+++++.+.. ......++|.|+..++.|..
T Consensus 350 ~v-e~YD~~~~~W~~~a~M~~~--------R~~~~v~~----l~g~iYavGG~d------g~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 350 SV-ERYDPRTNQWTPVAPMNTK--------RSDFGVAV----LDGKLYAVGGFD------GEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred eE-EEecCCCCceeccCCccCc--------cccceeEE----ECCEEEEEeccc------cccccccEEEecCCCCcccc
Confidence 45 8899999999999998753 22222221 125566665321 12346789999999999998
Q ss_pred CCCCCCCccccccCCcceEEccEEEEEEeCCCCc---cEEEEEECCCcceeEeC-CCCCCCccccccccCCCceEEEECC
Q 037087 204 LGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDYY---KEILKFSMTDEVFQVIQ-GPNIPQLLNYYESAMRPWMLGIYDD 279 (370)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~---~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~~g 279 (370)
... ++.. ..+...+.++|.+|-+.+..... ..+-+||+.+++|+.++ ++... .... +++++|
T Consensus 411 va~--m~~~--r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R-------~~~g---~a~~~~ 476 (571)
T KOG4441|consen 411 VAP--MLTR--RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR-------SGFG---VAVLNG 476 (571)
T ss_pred cCC--CCcc--eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc-------ccce---EEEECC
Confidence 552 3221 23344899999999998865433 68999999999999884 34422 2334 789999
Q ss_pred eEEEEEecCC---CceEEEEEecCCceeEEEEecCCcceeeeeEEe-eCCeEEEEeC------CCeEEEEECCCCcEEEE
Q 037087 280 YLSILYSEEM---AHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFW-RKGEFLLQSS------DKRLVLYDSTYEEMRDL 349 (370)
Q Consensus 280 ~L~~~~~~~~---~~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~-~~~~ll~~~~------~~~~~~yd~~~~~~~~v 349 (370)
+|+++..... ..+++..-.+...|..+..+... ....++. -++.+++... -..+-.||+++++|+.+
T Consensus 477 ~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~---rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 477 KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP---RSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred EEEEECCccCCCccceEEEEcCCCCceeEcccCccc---cccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 9999998533 22333333333889988544322 1222222 2666666522 23588999999999987
Q ss_pred E
Q 037087 350 G 350 (370)
Q Consensus 350 ~ 350 (370)
.
T Consensus 554 ~ 554 (571)
T KOG4441|consen 554 T 554 (571)
T ss_pred C
Confidence 5
No 13
>PLN02153 epithiospecifier protein
Probab=98.51 E-value=1.2e-05 Score=74.89 Aligned_cols=204 Identities=12% Similarity=0.082 Sum_probs=115.0
Q ss_pred CeeEEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCCcEEEEEcCCCceec
Q 037087 124 THINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRD 203 (370)
Q Consensus 124 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~ 203 (370)
.+ ++.||.+++|..+|+...... .....+..... .=+|+.+... .. ......+++|+..+++|+.
T Consensus 51 ~~-~~yd~~~~~W~~~~~~~~~p~----~~~~~~~~~~~----~~~iyv~GG~---~~---~~~~~~v~~yd~~t~~W~~ 115 (341)
T PLN02153 51 DL-YVFDFNTHTWSIAPANGDVPR----ISCLGVRMVAV----GTKLYIFGGR---DE---KREFSDFYSYDTVKNEWTF 115 (341)
T ss_pred cE-EEEECCCCEEEEcCccCCCCC----CccCceEEEEE----CCEEEEECCC---CC---CCccCcEEEEECCCCEEEE
Confidence 45 999999999999886532110 00111111111 1245555421 11 1124578999999999997
Q ss_pred CCCC---CCCccccccCCcceEEccEEEEEEeCCCC--------ccEEEEEECCCcceeEeCCCCCCCccccccccCCCc
Q 037087 204 LGGF---PMSRHYRFEGADDVYLNGFCYWVVHRPDY--------YKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPW 272 (370)
Q Consensus 204 ~~~~---~~~~~~~~~~~~~v~~~G~lywl~~~~~~--------~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~ 272 (370)
.... ..|.. .....++..+|.+|-+...... -..+.+||+.+.+|..++.+.... .......
T Consensus 116 ~~~~~~~~~p~~--R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~---~~r~~~~-- 188 (341)
T PLN02153 116 LTKLDEEGGPEA--RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF---EKRGGAG-- 188 (341)
T ss_pred eccCCCCCCCCC--ceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC---CCCCcce--
Confidence 4321 11221 1233477889999988664311 125789999999999876432110 0011223
Q ss_pred eEEEECCeEEEEEecCC---------CceEEEEEecC--CceeEEEEec--CCcceeeeeEEeeCCeEEEEeCC------
Q 037087 273 MLGIYDDYLSILYSEEM---------AHSFDLWIMKG--RSWTKQFTFG--PFIETYQPLTFWRKGEFLLQSSD------ 333 (370)
Q Consensus 273 ~l~~~~g~L~~~~~~~~---------~~~l~IW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~ll~~~~~------ 333 (370)
++..+|+++++..... ...-+|++++- .+|.++.... |.+.......+. ++.|++....
T Consensus 189 -~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 266 (341)
T PLN02153 189 -FAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV-GKYIIIFGGEVWPDLK 266 (341)
T ss_pred -EEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEE-CCEEEEECcccCCccc
Confidence 6788999998764210 01123555554 8899876543 222112222222 5666665221
Q ss_pred ---------CeEEEEECCCCcEEEEEE
Q 037087 334 ---------KRLVLYDSTYEEMRDLGI 351 (370)
Q Consensus 334 ---------~~~~~yd~~~~~~~~v~~ 351 (370)
..++.||+++++|+++.-
T Consensus 267 ~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 267 GHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred cccccccccccEEEEEcCccEEEeccC
Confidence 268999999999998863
No 14
>PLN02193 nitrile-specifier protein
Probab=98.42 E-value=6.9e-05 Score=72.82 Aligned_cols=203 Identities=11% Similarity=0.093 Sum_probs=118.0
Q ss_pred CeeEEEecccccccccCCCccCCCCCcccccceEEE-eecCCCCceEEEEEEEEeecCCcCCCCCCCcEEEEEcCCCcee
Q 037087 124 THINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGL-GVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWR 202 (370)
Q Consensus 124 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~-~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~t~~W~ 202 (370)
.+ ++.||.+++|..+|+.... +. .......+ .++ =+++.+.. ... ......+++|++.+++|+
T Consensus 194 ~v-~~yD~~~~~W~~~~~~g~~-P~---~~~~~~~~v~~~-----~~lYvfGG---~~~---~~~~ndv~~yD~~t~~W~ 257 (470)
T PLN02193 194 HL-YVFDLETRTWSISPATGDV-PH---LSCLGVRMVSIG-----STLYVFGG---RDA---SRQYNGFYSFDTTTNEWK 257 (470)
T ss_pred cE-EEEECCCCEEEeCCCCCCC-CC---CcccceEEEEEC-----CEEEEECC---CCC---CCCCccEEEEECCCCEEE
Confidence 35 8999999999987753211 10 00111111 111 13444432 110 112467899999999999
Q ss_pred cCCCC-CCCccccccCCcceEEccEEEEEEeCCC--CccEEEEEECCCcceeEeCCCCCCCccccccccCCCceEEEECC
Q 037087 203 DLGGF-PMSRHYRFEGADDVYLNGFCYWVVHRPD--YYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDD 279 (370)
Q Consensus 203 ~~~~~-~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g 279 (370)
..... ..|.. ......+..++.+|.+..... ....+.+||+.+.+|..++.|.... ....... ++..+|
T Consensus 258 ~l~~~~~~P~~--R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~---~~R~~~~---~~~~~g 329 (470)
T PLN02193 258 LLTPVEEGPTP--RSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSF---SIRGGAG---LEVVQG 329 (470)
T ss_pred EcCcCCCCCCC--ccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCC---CCCCCcE---EEEECC
Confidence 84321 11210 122336778999999876432 1245789999999999887543211 1112233 678899
Q ss_pred eEEEEEecCCCceEEEEEecC--CceeEEEEec--CCcceeeeeEEeeCCeEEEEeCC---------------CeEEEEE
Q 037087 280 YLSILYSEEMAHSFDLWIMKG--RSWTKQFTFG--PFIETYQPLTFWRKGEFLLQSSD---------------KRLVLYD 340 (370)
Q Consensus 280 ~L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~ll~~~~~---------------~~~~~yd 340 (370)
+++++........-++|+++- ..|.++..+. |.+......++ -++.|++.... ..++.||
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D 408 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD 408 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECCEEEEECCccCCccccccCccceeccEEEEE
Confidence 999887632222345677765 8899886543 22212222222 35677665221 2489999
Q ss_pred CCCCcEEEEEE
Q 037087 341 STYEEMRDLGI 351 (370)
Q Consensus 341 ~~~~~~~~v~~ 351 (370)
++|++|+++..
T Consensus 409 ~~t~~W~~~~~ 419 (470)
T PLN02193 409 TETLQWERLDK 419 (470)
T ss_pred cCcCEEEEccc
Confidence 99999998864
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.42 E-value=0.00011 Score=68.71 Aligned_cols=202 Identities=13% Similarity=0.151 Sum_probs=114.7
Q ss_pred CeeEEEe--cccccccccCCCccCCCCCcccccceEEEe-ecCCCCceEEEEEEEEeecCCcCCCCCCCcEEEEEcCCCc
Q 037087 124 THINLWN--VSMDEYRVVPRYKVRLPCDTRAHSSYYGLG-VDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNC 200 (370)
Q Consensus 124 ~~~~V~N--P~T~~~~~lP~~~~~~~~~~~~~~~~~~~~-~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 200 (370)
.+ ++.+ |.+++|..+|+++... ...++.+ .+ =+|+.+.................++.|+..+++
T Consensus 30 ~~-~~~d~~~~~~~W~~l~~~p~~~-------R~~~~~~~~~-----~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 30 SW-YKLDLKKPSKGWQKIADFPGGP-------RNQAVAAAID-----GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred ee-EEEECCCCCCCceECCCCCCCC-------cccceEEEEC-----CEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 45 7776 4788999999876310 1111111 12 156655431100000000123579999999999
Q ss_pred eecCCCCCCCccccccCCcce-EEccEEEEEEeCCCC------------------------------------ccEEEEE
Q 037087 201 WRDLGGFPMSRHYRFEGADDV-YLNGFCYWVVHRPDY------------------------------------YKEILKF 243 (370)
Q Consensus 201 W~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~------------------------------------~~~il~f 243 (370)
|+.... .+|.. .....++ .++|.||-+...... ...+.+|
T Consensus 97 W~~~~~-~~p~~--~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Y 173 (346)
T TIGR03547 97 WQKLDT-RSPVG--LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSY 173 (346)
T ss_pred EecCCC-CCCCc--ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEE
Confidence 998542 23331 1122233 689999988764311 1468999
Q ss_pred ECCCcceeEeC-CCCCCCccccccccCCCceEEEECCeEEEEEecC--CCceEEEEEec--C--CceeEEEEecCCc---
Q 037087 244 SMTDEVFQVIQ-GPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEE--MAHSFDLWIMK--G--RSWTKQFTFGPFI--- 313 (370)
Q Consensus 244 D~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~~--~~~~l~IW~l~--~--~~W~~~~~i~~~~--- 313 (370)
|+.+++|+.+. +|.... .... ++..+|+|+++.... .....++|..+ . ..|..+..+....
T Consensus 174 Dp~t~~W~~~~~~p~~~r------~~~~---~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~ 244 (346)
T TIGR03547 174 DPSTNQWRNLGENPFLGT------AGSA---IVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSS 244 (346)
T ss_pred ECCCCceeECccCCCCcC------CCce---EEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCc
Confidence 99999999985 343211 1233 678899999998641 12334566654 2 6898876553111
Q ss_pred --ceeeeeEEeeCCeEEEEeCC-----------------------CeEEEEECCCCcEEEEE
Q 037087 314 --ETYQPLTFWRKGEFLLQSSD-----------------------KRLVLYDSTYEEMRDLG 350 (370)
Q Consensus 314 --~~~~~~~~~~~~~ll~~~~~-----------------------~~~~~yd~~~~~~~~v~ 350 (370)
......++.-++.|++.... ..+-+||+++++|+.+.
T Consensus 245 ~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 245 QEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred cccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 00111122347788776321 14679999999998774
No 16
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.39 E-value=1.5e-05 Score=78.85 Aligned_cols=191 Identities=14% Similarity=0.132 Sum_probs=123.9
Q ss_pred EEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCCcEEEEEcCCCceecCCC
Q 037087 127 NLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRDLGG 206 (370)
Q Consensus 127 ~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~ 206 (370)
...||.+++|..+.+++.... ..+.+.-. =+|+.+++... .......++.|++++++|...+
T Consensus 304 e~yd~~~~~w~~~a~m~~~r~--------~~~~~~~~----~~lYv~GG~~~-----~~~~l~~ve~YD~~~~~W~~~a- 365 (571)
T KOG4441|consen 304 ECYDPKTNEWSSLAPMPSPRC--------RVGVAVLN----GKLYVVGGYDS-----GSDRLSSVERYDPRTNQWTPVA- 365 (571)
T ss_pred EEecCCcCcEeecCCCCcccc--------cccEEEEC----CEEEEEccccC-----CCcccceEEEecCCCCceeccC-
Confidence 678999999999988775311 12222211 16666653221 1234689999999999999843
Q ss_pred CCCCccccccCCcceEEccEEEEEEeCCC--CccEEEEEECCCcceeEeC-CCCCCCccccccccCCCceEEEECCeEEE
Q 037087 207 FPMSRHYRFEGADDVYLNGFCYWVVHRPD--YYKEILKFSMTDEVFQVIQ-GPNIPQLLNYYESAMRPWMLGIYDDYLSI 283 (370)
Q Consensus 207 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~~g~L~~ 283 (370)
++... -.....+.++|.+|-+.+.++ .-..+-.||+.+++|..+. ++.. . .... .++.+|+|++
T Consensus 366 -~M~~~--R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~-r------~~~g---v~~~~g~iYi 432 (571)
T KOG4441|consen 366 -PMNTK--RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR-R------SGHG---VAVLGGKLYI 432 (571)
T ss_pred -CccCc--cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc-e------eeeE---EEEECCEEEE
Confidence 33331 223348899999999987762 2347999999999999985 4442 2 2333 7899999999
Q ss_pred EEecCCCc----eEEEEEecCCceeEEEEecCCcceeeeeEEeeCCeEEEEeC------CCeEEEEECCCCcEEEEE
Q 037087 284 LYSEEMAH----SFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSS------DKRLVLYDSTYEEMRDLG 350 (370)
Q Consensus 284 ~~~~~~~~----~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~------~~~~~~yd~~~~~~~~v~ 350 (370)
+....... +++..--....|..+..+.-.. ....+++. ++.|++... ...+-.||+++++|..+.
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R-~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR-SGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCccccc-ccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 99842222 2333222228898877654221 22233333 778877733 224889999999999995
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.31 E-value=0.00012 Score=67.52 Aligned_cols=152 Identities=11% Similarity=0.059 Sum_probs=94.4
Q ss_pred CCcEEEEEcCCCceec--CCCCCCCccccccCCcceEEccEEEEEEeCCC--CccEEEEEECCCcceeEeC-CCCCCCcc
Q 037087 188 FSPAAVYNFTTNCWRD--LGGFPMSRHYRFEGADDVYLNGFCYWVVHRPD--YYKEILKFSMTDEVFQVIQ-GPNIPQLL 262 (370)
Q Consensus 188 ~~~~~vyss~t~~W~~--~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~il~fD~~~~~~~~i~-~P~~~~~~ 262 (370)
...++.|+..++.|.. ...+++|.. .....++.++|.+|-+..... ....+.+||+.+++|+.++ +|....
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~--~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r-- 162 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFT--FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR-- 162 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcC--ccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC--
Confidence 4578899999999831 112244441 223347888999999876421 1346899999999999885 554222
Q ss_pred ccccccCCCceEEEECCeEEEEEecCCCceEEEEEecC--CceeEEEEec--CCcc--eeeeeEEeeCCeEEEEeC----
Q 037087 263 NYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKG--RSWTKQFTFG--PFIE--TYQPLTFWRKGEFLLQSS---- 332 (370)
Q Consensus 263 ~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i~--~~~~--~~~~~~~~~~~~ll~~~~---- 332 (370)
.... .+..+|+|+++.........++|..+- ..|.++..+. ..+. ....-.+..++.|++...
T Consensus 163 ----~~~~---~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~ 235 (323)
T TIGR03548 163 ----VQPV---CVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKD 235 (323)
T ss_pred ----Ccce---EEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHH
Confidence 1223 678899999998743222345666665 8898765432 1110 011111223567766522
Q ss_pred ----------------------------------CCeEEEEECCCCcEEEEE
Q 037087 333 ----------------------------------DKRLVLYDSTYEEMRDLG 350 (370)
Q Consensus 333 ----------------------------------~~~~~~yd~~~~~~~~v~ 350 (370)
...+..||+++++|+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 236 VYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred HHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 146999999999999886
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.16 E-value=0.00046 Score=65.18 Aligned_cols=151 Identities=18% Similarity=0.218 Sum_probs=93.1
Q ss_pred CCcEEEEEcCCCceecCCCCCCCccccccCCcceE-EccEEEEEEeCCCC------------------------------
Q 037087 188 FSPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVY-LNGFCYWVVHRPDY------------------------------ 236 (370)
Q Consensus 188 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~------------------------------ 236 (370)
...++.|+..+++|+.... ..|.. .....++. .+|.||-+......
T Consensus 105 ~~~v~~YD~~~n~W~~~~~-~~p~~--~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~ 181 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDT-RSPVG--LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKK 181 (376)
T ss_pred cccEEEEeCCCCEEEeCCC-CCCCc--ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCC
Confidence 3578999999999998543 22331 22222344 79999999764310
Q ss_pred ------ccEEEEEECCCcceeEeC-CCCCCCccccccccCCCceEEEECCeEEEEEec--CCCceEEEEEec--C--Cce
Q 037087 237 ------YKEILKFSMTDEVFQVIQ-GPNIPQLLNYYESAMRPWMLGIYDDYLSILYSE--EMAHSFDLWIMK--G--RSW 303 (370)
Q Consensus 237 ------~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~--~~~~~l~IW~l~--~--~~W 303 (370)
...+..||+.+++|+.+. +|.... .... ++..+++|+++... ......++|..+ . ..|
T Consensus 182 ~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~------~~~a---~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W 252 (376)
T PRK14131 182 PEDYFFNKEVLSYDPSTNQWKNAGESPFLGT------AGSA---VVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKW 252 (376)
T ss_pred hhhcCcCceEEEEECCCCeeeECCcCCCCCC------Ccce---EEEECCEEEEEeeeECCCcCChhheEEEecCCCcce
Confidence 146999999999999875 443111 1223 67789999999863 223456677554 2 789
Q ss_pred eEEEEecCCcc------eeeeeEEeeCCeEEEEeCC-----------------------CeEEEEECCCCcEEEEE
Q 037087 304 TKQFTFGPFIE------TYQPLTFWRKGEFLLQSSD-----------------------KRLVLYDSTYEEMRDLG 350 (370)
Q Consensus 304 ~~~~~i~~~~~------~~~~~~~~~~~~ll~~~~~-----------------------~~~~~yd~~~~~~~~v~ 350 (370)
.++..+..... .....++.-++.|++.... ..+-+||+++++|+.+.
T Consensus 253 ~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 253 QKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred eecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 98776532110 0111122346777776321 02347999999998775
No 19
>PLN02153 epithiospecifier protein
Probab=98.04 E-value=0.0012 Score=61.43 Aligned_cols=166 Identities=13% Similarity=0.152 Sum_probs=92.7
Q ss_pred CeeEEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCCcEEEEEcCCCceec
Q 037087 124 THINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRD 203 (370)
Q Consensus 124 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~ 203 (370)
.+ ++.||.|++|..+++......+ ........... .+ |++.+.................+++|+..+++|..
T Consensus 102 ~v-~~yd~~t~~W~~~~~~~~~~~p---~~R~~~~~~~~--~~--~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 173 (341)
T PLN02153 102 DF-YSYDTVKNEWTFLTKLDEEGGP---EARTFHSMASD--EN--HVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ 173 (341)
T ss_pred cE-EEEECCCCEEEEeccCCCCCCC---CCceeeEEEEE--CC--EEEEECCccCCCccCCCcccceEEEEECCCCeEee
Confidence 45 8999999999998864211000 00111122211 11 45555321100000000123468999999999998
Q ss_pred CCCCCCCccccccCCcceEEccEEEEEEeCCC----------CccEEEEEECCCcceeEeCC----CCCCCccccccccC
Q 037087 204 LGGFPMSRHYRFEGADDVYLNGFCYWVVHRPD----------YYKEILKFSMTDEVFQVIQG----PNIPQLLNYYESAM 269 (370)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~----------~~~~il~fD~~~~~~~~i~~----P~~~~~~~~~~~~~ 269 (370)
......+.. .......+.++|.+|-+..... ....+.+||+.+.+|..++. |.... ..
T Consensus 174 l~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~-------~~ 245 (341)
T PLN02153 174 LPDPGENFE-KRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS-------VF 245 (341)
T ss_pred CCCCCCCCC-CCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc-------ee
Confidence 432211110 0112236778999998754320 02368899999999998852 33211 22
Q ss_pred CCceEEEECCeEEEEEecCC----------CceEEEEEecC--CceeEEEE
Q 037087 270 RPWMLGIYDDYLSILYSEEM----------AHSFDLWIMKG--RSWTKQFT 308 (370)
Q Consensus 270 ~~~~l~~~~g~L~~~~~~~~----------~~~l~IW~l~~--~~W~~~~~ 308 (370)
. .+..+++|.++..... ...-+||.++- ..|+++..
T Consensus 246 ~---~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 246 A---HAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred e---eEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 2 5688899999887310 11237899987 88998764
No 20
>PHA03098 kelch-like protein; Provisional
Probab=97.97 E-value=0.00073 Score=66.98 Aligned_cols=169 Identities=12% Similarity=0.237 Sum_probs=101.8
Q ss_pred eeeecceEEEccC-------CCeeEEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCc
Q 037087 110 TGPYDGIFLLLGD-------HTHINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQ 182 (370)
Q Consensus 110 ~~s~nGLl~~~~~-------~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~ 182 (370)
..+.+|-|.+..+ ... .+.||.|++|..+|+.+.... .. .+..++ + +++.+++.. ..
T Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~v-~~yd~~~~~W~~~~~lp~~r~------~~-~~~~~~---~--~iYv~GG~~-~~-- 401 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNSISLNTV-ESWKPGESKWREEPPLIFPRY------NP-CVVNVN---N--LIYVIGGIS-KN-- 401 (534)
T ss_pred EEEECCEEEEEeCCCCCEecceE-EEEcCCCCceeeCCCcCcCCc------cc-eEEEEC---C--EEEEECCcC-CC--
Confidence 4455665544432 245 889999999999987764310 11 111111 1 455554211 11
Q ss_pred CCCCCCCcEEEEEcCCCceecCCCCCCCccccccCCcceEEccEEEEEEeCCCC-----ccEEEEEECCCcceeEeCC-C
Q 037087 183 WTYDEFSPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDY-----YKEILKFSMTDEVFQVIQG-P 256 (370)
Q Consensus 183 ~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-----~~~il~fD~~~~~~~~i~~-P 256 (370)
......+++|+..+++|..... +|.. .....++..+|.+|-++..... ...+..||+.+++|+.++. |
T Consensus 402 --~~~~~~v~~yd~~t~~W~~~~~--~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 475 (534)
T PHA03098 402 --DELLKTVECFSLNTNKWSKGSP--LPIS--HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN 475 (534)
T ss_pred --CcccceEEEEeCCCCeeeecCC--CCcc--ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC
Confidence 1124678999999999998543 3331 2233478889999988754311 2358999999999998853 3
Q ss_pred CCCCccccccccCCCceEEEECCeEEEEEecCCCc-eEEEEEecC--CceeEEEEec
Q 037087 257 NIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAH-SFDLWIMKG--RSWTKQFTFG 310 (370)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~-~l~IW~l~~--~~W~~~~~i~ 310 (370)
.. . .... ++..+|+|+++....... .-.|+..+- ..|......+
T Consensus 476 ~~-r------~~~~---~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 476 FP-R------INAS---LCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred cc-c------ccce---EEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCc
Confidence 21 1 1223 677899999988642111 235666665 8898876543
No 21
>PHA02790 Kelch-like protein; Provisional
Probab=97.90 E-value=0.00063 Score=66.36 Aligned_cols=144 Identities=11% Similarity=0.098 Sum_probs=96.3
Q ss_pred CCcEEEEEcCCCceecCCCCCCCccccccCCcceEEccEEEEEEeCCCCccEEEEEECCCcceeEeC-CCCCCCcccccc
Q 037087 188 FSPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVIQ-GPNIPQLLNYYE 266 (370)
Q Consensus 188 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~ 266 (370)
...++.|+..+++|......+.+. .....+.++|.+|-+++... ...+-.||+.+++|..++ +|....
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~~r----~~~~~v~~~~~iYviGG~~~-~~sve~ydp~~n~W~~~~~l~~~r~------ 354 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNSPR----LYASGVPANNKLYVVGGLPN-PTSVERWFHGDAAWVNMPSLLKPRC------ 354 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCchh----hcceEEEECCEEEEECCcCC-CCceEEEECCCCeEEECCCCCCCCc------
Confidence 457889999999999865322222 12337789999999987532 245789999999998774 343221
Q ss_pred ccCCCceEEEECCeEEEEEecC-CCceEEEEEecCCceeEEEEecCCcceeeeeEEeeCCeEEEEeCCCeEEEEECCCCc
Q 037087 267 SAMRPWMLGIYDDYLSILYSEE-MAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEE 345 (370)
Q Consensus 267 ~~~~~~~l~~~~g~L~~~~~~~-~~~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~ 345 (370)
... .++++|+|+++.... ....++.+-.+...|.....+.. + .....++.-+|.|++.. +.+-+||+++++
T Consensus 355 -~~~---~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~-~-r~~~~~~~~~~~IYv~G--G~~e~ydp~~~~ 426 (480)
T PHA02790 355 -NPA---VASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY-P-HYKSCALVFGRRLFLVG--RNAEFYCESSNT 426 (480)
T ss_pred -ccE---EEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC-c-cccceEEEECCEEEEEC--CceEEecCCCCc
Confidence 223 789999999998742 22456666555588987544321 1 11222333478888874 347789999999
Q ss_pred EEEEE
Q 037087 346 MRDLG 350 (370)
Q Consensus 346 ~~~v~ 350 (370)
|+.+.
T Consensus 427 W~~~~ 431 (480)
T PHA02790 427 WTLID 431 (480)
T ss_pred EeEcC
Confidence 99875
No 22
>PLN02193 nitrile-specifier protein
Probab=97.85 E-value=0.003 Score=61.43 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=91.3
Q ss_pred CcEEEEEcCCCceecCCCC-CCCccccccCCcceEEccEEEEEEeCCC--CccEEEEEECCCcceeEeCCC-CCCCcccc
Q 037087 189 SPAAVYNFTTNCWRDLGGF-PMSRHYRFEGADDVYLNGFCYWVVHRPD--YYKEILKFSMTDEVFQVIQGP-NIPQLLNY 264 (370)
Q Consensus 189 ~~~~vyss~t~~W~~~~~~-~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~il~fD~~~~~~~~i~~P-~~~~~~~~ 264 (370)
..+++|+.++++|...... ..|.. +......+.+++.||-+..... ....+.+||+.+.+|+.+... .... ..
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~-~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~--~R 269 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHL-SCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPT--PR 269 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCC-cccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCC--Cc
Confidence 4689999999999973221 22320 0112336788999998876432 124688999999999987431 1011 01
Q ss_pred ccccCCCceEEEECCeEEEEEecCC-CceEEEEEecC--CceeEEEEec--CCcceeeeeEEeeCCeEEEEeC-----CC
Q 037087 265 YESAMRPWMLGIYDDYLSILYSEEM-AHSFDLWIMKG--RSWTKQFTFG--PFIETYQPLTFWRKGEFLLQSS-----DK 334 (370)
Q Consensus 265 ~~~~~~~~~l~~~~g~L~~~~~~~~-~~~l~IW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~ll~~~~-----~~ 334 (370)
.... ++..+++|+++..... ...-.+|.++- .+|....... +.......+.+. +++|++... ..
T Consensus 270 --~~h~---~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~~ 343 (470)
T PLN02193 270 --SFHS---MAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEVD 343 (470)
T ss_pred --cceE---EEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCCccC
Confidence 1223 5678999999886421 11223455543 8898754321 111112223333 556665522 24
Q ss_pred eEEEEECCCCcEEEEEE
Q 037087 335 RLVLYDSTYEEMRDLGI 351 (370)
Q Consensus 335 ~~~~yd~~~~~~~~v~~ 351 (370)
.+..||+++++|+++..
T Consensus 344 dv~~yD~~t~~W~~~~~ 360 (470)
T PLN02193 344 DVHYYDPVQDKWTQVET 360 (470)
T ss_pred ceEEEECCCCEEEEecc
Confidence 69999999999999864
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.71 E-value=0.0062 Score=56.25 Aligned_cols=138 Identities=12% Similarity=0.030 Sum_probs=77.1
Q ss_pred CeeEEEecccccc----cccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCCcEEEEEcCCC
Q 037087 124 THINLWNVSMDEY----RVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTN 199 (370)
Q Consensus 124 ~~~~V~NP~T~~~----~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~t~ 199 (370)
.+ +..|+.+++| ..+|+.|... ....+..++ =+|+.+... .. ......+++|+..++
T Consensus 89 ~v-~~~d~~~~~w~~~~~~~~~lp~~~-------~~~~~~~~~-----~~iYv~GG~--~~----~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 89 SV-YRITLDESKEELICETIGNLPFTF-------ENGSACYKD-----GTLYVGGGN--RN----GKPSNKSYLFNLETQ 149 (323)
T ss_pred eE-EEEEEcCCceeeeeeEcCCCCcCc-------cCceEEEEC-----CEEEEEeCc--CC----CccCceEEEEcCCCC
Confidence 44 7889999987 6677665421 111111222 145555431 11 122467899999999
Q ss_pred ceecCCCCCCCccccccCCcceEEccEEEEEEeCCCC-ccEEEEEECCCcceeEeCC-CCCCCccccccccCCCceEEEE
Q 037087 200 CWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDY-YKEILKFSMTDEVFQVIQG-PNIPQLLNYYESAMRPWMLGIY 277 (370)
Q Consensus 200 ~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~il~fD~~~~~~~~i~~-P~~~~~~~~~~~~~~~~~l~~~ 277 (370)
+|..... +|.. .......+.++|.||-+...... ...+.+||+.+++|+.++- +..... ........ ++..
T Consensus 150 ~W~~~~~--~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p-~~~~~~~~---~~~~ 222 (323)
T TIGR03548 150 EWFELPD--FPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEP-ISLLGAAS---IKIN 222 (323)
T ss_pred CeeECCC--CCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCc-eeccceeE---EEEC
Confidence 9998542 2210 01122256889999998765421 2346899999999998753 211000 00001122 3455
Q ss_pred CCeEEEEEec
Q 037087 278 DDYLSILYSE 287 (370)
Q Consensus 278 ~g~L~~~~~~ 287 (370)
+|+|+++...
T Consensus 223 ~~~iyv~GG~ 232 (323)
T TIGR03548 223 ESLLLCIGGF 232 (323)
T ss_pred CCEEEEECCc
Confidence 7888888763
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.59 E-value=0.013 Score=55.33 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=86.0
Q ss_pred CcEEEEEcCCCceecCCCCCCCccccccCCcceEEccEEEEEEeCC-----CCccEEEEEECCCcceeEeC-CCCCCCcc
Q 037087 189 SPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRP-----DYYKEILKFSMTDEVFQVIQ-GPNIPQLL 262 (370)
Q Consensus 189 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~-----~~~~~il~fD~~~~~~~~i~-~P~~~~~~ 262 (370)
..+++|+..++.|......+.+. ......+.++|.||.+.... ........||+.+.+|..+. +|.....
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~---~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~- 264 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLG---TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGG- 264 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCC---CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcC-
Confidence 57899999999999854322211 22233677899999998642 11235566788888998764 4442210
Q ss_pred cccc--ccCCCceEEEECCeEEEEEecCCC--------------------ceEEEEEecCCceeEEEEecCCcceeeeeE
Q 037087 263 NYYE--SAMRPWMLGIYDDYLSILYSEEMA--------------------HSFDLWIMKGRSWTKQFTFGPFIETYQPLT 320 (370)
Q Consensus 263 ~~~~--~~~~~~~l~~~~g~L~~~~~~~~~--------------------~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~ 320 (370)
.... .... .+..+|+|+++...... ..++++..+...|.+...++ .+.... .+
T Consensus 265 ~~~~~~~~~~---a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp-~~r~~~-~a 339 (376)
T PRK14131 265 SSQEGVAGAF---AGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELP-QGLAYG-VS 339 (376)
T ss_pred CcCCccceEe---ceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCC-CCccce-EE
Confidence 0000 0111 35789999988863210 12445555558898765443 221122 23
Q ss_pred EeeCCeEEEEeCC-------CeEEEEECCCCcEE
Q 037087 321 FWRKGEFLLQSSD-------KRLVLYDSTYEEMR 347 (370)
Q Consensus 321 ~~~~~~ll~~~~~-------~~~~~yd~~~~~~~ 347 (370)
+.-+++|++.... ..+..|+.+++.+.
T Consensus 340 v~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 340 VSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred EEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 3346777776321 25777877776554
No 25
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.53 E-value=0.0016 Score=56.36 Aligned_cols=212 Identities=9% Similarity=0.042 Sum_probs=114.6
Q ss_pred CeeEEEecccccccccCCCccCCCCCcccccceE-EEeecCCCCce--EEEEEEEEeecCCcCCCCCCCcEEEEEcCCCc
Q 037087 124 THINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYY-GLGVDPVANDF--KLVLVLTLWDENRQWTYDEFSPAAVYNFTTNC 200 (370)
Q Consensus 124 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~-~~~~d~~~~~y--kvv~~~~~~~~~~~~~~~~~~~~~vyss~t~~ 200 (370)
.. .|.|-.+-+|..+|+.-.... ......+. ..-|-...-.| |+...... +++ ......+.-|+.+++.
T Consensus 45 DV-H~lNa~~~RWtk~pp~~~ka~--i~~~yp~VPyqRYGHtvV~y~d~~yvWGGR--ND~---egaCN~Ly~fDp~t~~ 116 (392)
T KOG4693|consen 45 DV-HVLNAENYRWTKMPPGITKAT--IESPYPAVPYQRYGHTVVEYQDKAYVWGGR--NDD---EGACNLLYEFDPETNV 116 (392)
T ss_pred ee-EEeeccceeEEecCccccccc--ccCCCCccchhhcCceEEEEcceEEEEcCc--cCc---ccccceeeeecccccc
Confidence 45 899999999999998322110 00000000 01111111112 23333221 111 2345677889999999
Q ss_pred eecC-CCCCCCccccccCCcceEEccEEEEEEeCCCC----ccEEEEEECCCcceeEeCC---CCCCCccccccccCCCc
Q 037087 201 WRDL-GGFPMSRHYRFEGADDVYLNGFCYWVVHRPDY----YKEILKFSMTDEVFQVIQG---PNIPQLLNYYESAMRPW 272 (370)
Q Consensus 201 W~~~-~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~----~~~il~fD~~~~~~~~i~~---P~~~~~~~~~~~~~~~~ 272 (370)
|+.. ...-+|.. --+.++++.+..+|-...-..+ .--+-++|+.+++|+.+.. |+.-. +.+ .
T Consensus 117 W~~p~v~G~vPga--RDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR----DFH--~-- 186 (392)
T KOG4693|consen 117 WKKPEVEGFVPGA--RDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR----DFH--T-- 186 (392)
T ss_pred ccccceeeecCCc--cCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh----hhh--h--
Confidence 9982 22123331 2334477777778877554311 2358899999999999864 44221 111 1
Q ss_pred eEEEECCeEEEEEecC------------CCceEEEEEecCCceeEEEEecCCcceeee-eEEeeCCeEEEE--------e
Q 037087 273 MLGIYDDYLSILYSEE------------MAHSFDLWIMKGRSWTKQFTFGPFIETYQP-LTFWRKGEFLLQ--------S 331 (370)
Q Consensus 273 ~l~~~~g~L~~~~~~~------------~~~~l~IW~l~~~~W~~~~~i~~~~~~~~~-~~~~~~~~ll~~--------~ 331 (370)
-.+++|..++..... ...++..--|..+.|.+...-...+.-.+. -.+.-||++++- .
T Consensus 187 -a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~ 265 (392)
T KOG4693|consen 187 -ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNV 265 (392)
T ss_pred -hhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhh
Confidence 346667777766531 122333333333888876433222221211 112236776654 2
Q ss_pred CCCeEEEEECCCCcEEEEEEecc
Q 037087 332 SDKRLVLYDSTYEEMRDLGITGL 354 (370)
Q Consensus 332 ~~~~~~~yd~~~~~~~~v~~~~~ 354 (370)
....++.||++|..|..|+..|+
T Consensus 266 HfndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 266 HFNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred hhcceeecccccchheeeeccCC
Confidence 24569999999999999998775
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.52 E-value=0.0018 Score=59.33 Aligned_cols=216 Identities=14% Similarity=0.164 Sum_probs=117.2
Q ss_pred CeeEEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCCcEEEEEcCCCceec
Q 037087 124 THINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRD 203 (370)
Q Consensus 124 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~ 203 (370)
.+ |+.|--+.+|+.+-.+..+.+ .+....+..++. .+..+...+..+..+.-..--...+|+..++.|..
T Consensus 99 dL-y~Yn~k~~eWkk~~spn~P~p------Rsshq~va~~s~---~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweq 168 (521)
T KOG1230|consen 99 DL-YSYNTKKNEWKKVVSPNAPPP------RSSHQAVAVPSN---ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQ 168 (521)
T ss_pred ee-eEEeccccceeEeccCCCcCC------CccceeEEeccC---eEEEeccccCCcchhhhhhhhheeeeeeccchhee
Confidence 45 889999999998743322211 222333333433 22222221211111001123456789999999998
Q ss_pred CCCC--CCCc-cccc--cCCcceEEccEEEEEEeCCCCccEEEEEECCCcceeEeCCCCCCCccccccccCCCceEEEE-
Q 037087 204 LGGF--PMSR-HYRF--EGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIY- 277 (370)
Q Consensus 204 ~~~~--~~~~-~~~~--~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~- 277 (370)
.... +.|. ++|. +.++-+.++| +|=......+..=+.+||+.+=+|+.+..+-. . ......+. +.+.
T Consensus 169 l~~~g~PS~RSGHRMvawK~~lilFGG-Fhd~nr~y~YyNDvy~FdLdtykW~Klepsga-~--PtpRSGcq---~~vtp 241 (521)
T KOG1230|consen 169 LEFGGGPSPRSGHRMVAWKRQLILFGG-FHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGA-G--PTPRSGCQ---FSVTP 241 (521)
T ss_pred eccCCCCCCCccceeEEeeeeEEEEcc-eecCCCceEEeeeeEEEeccceeeeeccCCCC-C--CCCCCcce---EEecC
Confidence 3221 2222 2221 1122222222 11111111112358999999999998876432 1 11112334 5555
Q ss_pred CCeEEEEEec----------CCCceEEEEEecC-------CceeEEEEec--CCcceeeeeEEeeCCe-EEEEe-----C
Q 037087 278 DDYLSILYSE----------EMAHSFDLWIMKG-------RSWTKQFTFG--PFIETYQPLTFWRKGE-FLLQS-----S 332 (370)
Q Consensus 278 ~g~L~~~~~~----------~~~~~l~IW~l~~-------~~W~~~~~i~--~~~~~~~~~~~~~~~~-ll~~~-----~ 332 (370)
.|.+.+.... .....-++|.|+. ..|.++-.+. |.+.....+++++++. ++|.. .
T Consensus 242 qg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~ee 321 (521)
T KOG1230|consen 242 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEE 321 (521)
T ss_pred CCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccc
Confidence 7777776643 3555778999986 6788888765 4444455677777654 45531 1
Q ss_pred ---------CCeEEEEECCCCcEEEEEEeccee
Q 037087 333 ---------DKRLVLYDSTYEEMRDLGITGLWF 356 (370)
Q Consensus 333 ---------~~~~~~yd~~~~~~~~v~~~~~~~ 356 (370)
.+.+++||++.++|.+-++.+..+
T Consensus 322 eeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~S 354 (521)
T KOG1230|consen 322 EEESLSGEFFNDLYFFDLTRNRWSEGQLQGKKS 354 (521)
T ss_pred cchhhhhhhhhhhhheecccchhhHhhhccCCC
Confidence 134899999999998888776543
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=2.4e-05 Score=68.69 Aligned_cols=40 Identities=30% Similarity=0.610 Sum_probs=37.4
Q ss_pred CCCCcHHHHHHHhccCCccccceeeecccchhhhcCChhh
Q 037087 11 YGDLSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNF 50 (370)
Q Consensus 11 ~~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~li~~p~F 50 (370)
+..|||||++.||+.|+.|+|+++..|||||+++.++...
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 7899999999999999999999999999999999887654
No 28
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.43 E-value=0.022 Score=53.14 Aligned_cols=134 Identities=15% Similarity=0.107 Sum_probs=75.8
Q ss_pred CcEEEEEcCCCceecCCCCCCCccccccCCcceEEccEEEEEEeCCCC---ccEEEEE--ECCCcceeEeC-CCCCCCcc
Q 037087 189 SPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDY---YKEILKF--SMTDEVFQVIQ-GPNIPQLL 262 (370)
Q Consensus 189 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~---~~~il~f--D~~~~~~~~i~-~P~~~~~~ 262 (370)
..+++|+..+++|+.... +|.. +......+.++|.||-+...... ...+..| |..+.+|..+. +|......
T Consensus 168 ~~v~~YDp~t~~W~~~~~--~p~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~ 244 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGE--NPFL-GTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSS 244 (346)
T ss_pred ceEEEEECCCCceeECcc--CCCC-cCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCc
Confidence 579999999999998542 3320 01223367889999998765311 1234444 45666887763 34321100
Q ss_pred ccccccCCCceEEEECCeEEEEEecCC--------------------CceEEEEEecCCceeEEEEecCCcceeeeeEEe
Q 037087 263 NYYESAMRPWMLGIYDDYLSILYSEEM--------------------AHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFW 322 (370)
Q Consensus 263 ~~~~~~~~~~~l~~~~g~L~~~~~~~~--------------------~~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~ 322 (370)
........ .+.++|+|+++..... ...++++..+...|..+..++. + .....++.
T Consensus 245 ~~~~~~~~---a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~-~-~~~~~~~~ 319 (346)
T TIGR03547 245 QEGLAGAF---AGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQ-G-LAYGVSVS 319 (346)
T ss_pred cccccEEe---eeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCC-C-ceeeEEEE
Confidence 00001122 4678999999886311 0256788877788988765532 2 11112223
Q ss_pred eCCeEEEE
Q 037087 323 RKGEFLLQ 330 (370)
Q Consensus 323 ~~~~ll~~ 330 (370)
-++.|++.
T Consensus 320 ~~~~iyv~ 327 (346)
T TIGR03547 320 WNNGVLLI 327 (346)
T ss_pred cCCEEEEE
Confidence 36677766
No 29
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.41 E-value=0.0033 Score=54.39 Aligned_cols=135 Identities=16% Similarity=0.224 Sum_probs=86.9
Q ss_pred CCcEEEEEcCCCceecCCCCCCCccccccCCcceEEccEEEEEEeCCC-----------CccEEEEEECCCcceeEeCC-
Q 037087 188 FSPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPD-----------YYKEILKFSMTDEVFQVIQG- 255 (370)
Q Consensus 188 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-----------~~~~il~fD~~~~~~~~i~~- 255 (370)
...+++++..|-.|+...+...|..||-+. .++.++|.+|-...+.+ +-..|+++|+.++.|...+-
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH-~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~ 234 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFH-TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPEN 234 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhh-hhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCC
Confidence 346678888899999966666666443333 37778899999987652 12589999999999977632
Q ss_pred CCCCCccccccccCCCceEEEECCeEEEEEec---CCCceEEEEEecC--CceeEEEEecCCc-ceeeeeEEeeCCeEEE
Q 037087 256 PNIPQLLNYYESAMRPWMLGIYDDYLSILYSE---EMAHSFDLWIMKG--RSWTKQFTFGPFI-ETYQPLTFWRKGEFLL 329 (370)
Q Consensus 256 P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~---~~~~~l~IW~l~~--~~W~~~~~i~~~~-~~~~~~~~~~~~~ll~ 329 (370)
|.... +...-. ..+++|++++.... -...--++|.++- ..|.++..-.-.+ .-.+-+++--++++++
T Consensus 235 ~~~P~----GRRSHS---~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~L 307 (392)
T KOG4693|consen 235 TMKPG----GRRSHS---TFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYL 307 (392)
T ss_pred CcCCC----cccccc---eEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEE
Confidence 22111 111122 67999999998864 1334557899988 8898866433222 2244455555677655
Q ss_pred E
Q 037087 330 Q 330 (370)
Q Consensus 330 ~ 330 (370)
-
T Consensus 308 F 308 (392)
T KOG4693|consen 308 F 308 (392)
T ss_pred e
Confidence 4
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.53 E-value=0.13 Score=50.32 Aligned_cols=156 Identities=12% Similarity=0.090 Sum_probs=100.3
Q ss_pred cEEEEEcCCCceec-CCCCCCCccccccCCcceEEccEEEEEEeCCC---CccEEEEEECCCcceeEeCCCCCCCccccc
Q 037087 190 PAAVYNFTTNCWRD-LGGFPMSRHYRFEGADDVYLNGFCYWVVHRPD---YYKEILKFSMTDEVFQVIQGPNIPQLLNYY 265 (370)
Q Consensus 190 ~~~vyss~t~~W~~-~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~il~fD~~~~~~~~i~~P~~~~~~~~~ 265 (370)
.+.+|+..+..|.. ......|.. ..+...+.++..||.+..... ....|-+||+.+.+|..++.-.... ..
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~--r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P---~~ 163 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSP--RYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPP---PP 163 (482)
T ss_pred eeEEeecCCcccccccccCCCCCc--ccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCC---CC
Confidence 58899999999988 222223321 334447788888888876652 1247999999999999886421100 01
Q ss_pred cccCCCceEEEECCeEEEEEecCCC--ceEEEEEecC--CceeEEEEecCCc--ceeeeeEEeeCCeEEEEeCC------
Q 037087 266 ESAMRPWMLGIYDDYLSILYSEEMA--HSFDLWIMKG--RSWTKQFTFGPFI--ETYQPLTFWRKGEFLLQSSD------ 333 (370)
Q Consensus 266 ~~~~~~~~l~~~~g~L~~~~~~~~~--~~l~IW~l~~--~~W~~~~~i~~~~--~~~~~~~~~~~~~ll~~~~~------ 333 (370)
...-. ++..+.+|.+....... ..-++|+++- ..|.++...+..+ ...+.+.+.++.-+++....
T Consensus 164 r~~Hs---~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l 240 (482)
T KOG0379|consen 164 RAGHS---ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYL 240 (482)
T ss_pred cccce---EEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCcee
Confidence 11223 66777888888865322 4678888887 7799998876433 34555666655444444322
Q ss_pred CeEEEEECCCCcEEEEEEec
Q 037087 334 KRLVLYDSTYEEMRDLGITG 353 (370)
Q Consensus 334 ~~~~~yd~~~~~~~~v~~~~ 353 (370)
.-++.+|+.+.+|+++...|
T Consensus 241 ~D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 241 NDVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred cceEeeecccceeeeccccC
Confidence 24899999998888665444
No 31
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.35 E-value=0.00085 Score=59.39 Aligned_cols=44 Identities=23% Similarity=0.461 Sum_probs=38.9
Q ss_pred CCCCcHHHHHHHhccCCc-----cccceeeecccchhhhcCChhhhHHh
Q 037087 11 YGDLSDDVMVETLSRLPV-----KSLMRFRCVCKSWYCLVKDPNFIYKH 54 (370)
Q Consensus 11 ~~~LP~Dll~eIL~rLp~-----~sl~r~~~VcK~W~~li~~p~F~~~~ 54 (370)
+..|||||+.+||.++=. ++|.++.+|||.|+-...+|+|-+.-
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 468999999999987654 89999999999999999999987753
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.87 E-value=0.0028 Score=56.66 Aligned_cols=43 Identities=30% Similarity=0.395 Sum_probs=38.9
Q ss_pred CCCCc----HHHHHHHhccCCccccceeeecccchhhhcCChhhhHH
Q 037087 11 YGDLS----DDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNFIYK 53 (370)
Q Consensus 11 ~~~LP----~Dll~eIL~rLp~~sl~r~~~VcK~W~~li~~p~F~~~ 53 (370)
+..|| +++.+.||+.|...+|..|+.|||+|+++++++-.-++
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 44689 99999999999999999999999999999999876554
No 33
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=95.67 E-value=1.1 Score=43.70 Aligned_cols=157 Identities=11% Similarity=0.042 Sum_probs=96.8
Q ss_pred CCcEEEEEcCCCceecC-CCCCCCccccccCCcceEEccEEEEEEeCCC---CccEEEEEECCCcceeEeCCCCCCCccc
Q 037087 188 FSPAAVYNFTTNCWRDL-GGFPMSRHYRFEGADDVYLNGFCYWVVHRPD---YYKEILKFSMTDEVFQVIQGPNIPQLLN 263 (370)
Q Consensus 188 ~~~~~vyss~t~~W~~~-~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~il~fD~~~~~~~~i~~P~~~~~~~ 263 (370)
...++.|+..|+.|+.. .....|.. ...+..+.++-.+|....... .-.-+.+||+.+.+|..+....... .
T Consensus 138 ~~~l~~~d~~t~~W~~l~~~~~~P~~--r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P--~ 213 (482)
T KOG0379|consen 138 LNELHSLDLSTRTWSLLSPTGDPPPP--RAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP--S 213 (482)
T ss_pred hhheEeccCCCCcEEEecCcCCCCCC--cccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCC--C
Confidence 56899999999999982 22122221 233446666666776654431 2357999999999999986532211 0
Q ss_pred cccccCCCceEEEECCeEEEEEec--CCCceEEEEEecC--CceeEEEEec--CCcceeeeeEEeeCCeEEEE-e-----
Q 037087 264 YYESAMRPWMLGIYDDYLSILYSE--EMAHSFDLWIMKG--RSWTKQFTFG--PFIETYQPLTFWRKGEFLLQ-S----- 331 (370)
Q Consensus 264 ~~~~~~~~~~l~~~~g~L~~~~~~--~~~~~l~IW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~ll~~-~----- 331 (370)
....-. ++..+++++++... .+..-=++|.|+= ..|.++.... |.+...+... ..+..+++. .
T Consensus 214 -pR~gH~---~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~ 288 (482)
T KOG0379|consen 214 -PRYGHA---MVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPK 288 (482)
T ss_pred -CCCCce---EEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeE-EECCEEEEEcCCcccc
Confidence 112233 77889999888863 2223457888887 7788544332 3333444454 334455443 1
Q ss_pred --CCCeEEEEECCCCcEEEEEEec
Q 037087 332 --SDKRLVLYDSTYEEMRDLGITG 353 (370)
Q Consensus 332 --~~~~~~~yd~~~~~~~~v~~~~ 353 (370)
.-..++.||.+++.|.++...+
T Consensus 289 ~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 289 QEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred cccccccccccccccceeeeeccc
Confidence 1345889999999998887554
No 34
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.03 E-value=1.6 Score=40.60 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=88.7
Q ss_pred cceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCCcEEEEEcCCCc--eecCCCCCCCccccccCCc-ceEEccEEEEE
Q 037087 154 SSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNC--WRDLGGFPMSRHYRFEGAD-DVYLNGFCYWV 230 (370)
Q Consensus 154 ~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~t~~--W~~~~~~~~~~~~~~~~~~-~v~~~G~lywl 230 (370)
.....+.++|+. +|-+|.- -..-.+.+|+...+. .........+.+ ..++. .+.-+|..-++
T Consensus 144 ~h~H~v~~~pdg-~~v~v~d------------lG~D~v~~~~~~~~~~~l~~~~~~~~~~G--~GPRh~~f~pdg~~~Yv 208 (345)
T PF10282_consen 144 PHPHQVVFSPDG-RFVYVPD------------LGADRVYVYDIDDDTGKLTPVDSIKVPPG--SGPRHLAFSPDGKYAYV 208 (345)
T ss_dssp TCEEEEEE-TTS-SEEEEEE------------TTTTEEEEEEE-TTS-TEEEEEEEECSTT--SSEEEEEE-TTSSEEEE
T ss_pred ccceeEEECCCC-CEEEEEe------------cCCCEEEEEEEeCCCceEEEeeccccccC--CCCcEEEEcCCcCEEEE
Confidence 445667777644 3333321 135678888887655 433111112221 11111 23336765555
Q ss_pred EeCCCCccEEEEEECC--CcceeEeC----CCCCCCccccccccCCCceEEEE-CCe-EEEEEecCCCceEEEEEecC--
Q 037087 231 VHRPDYYKEILKFSMT--DEVFQVIQ----GPNIPQLLNYYESAMRPWMLGIY-DDY-LSILYSEEMAHSFDLWIMKG-- 300 (370)
Q Consensus 231 ~~~~~~~~~il~fD~~--~~~~~~i~----~P~~~~~~~~~~~~~~~~~l~~~-~g~-L~~~~~~~~~~~l~IW~l~~-- 300 (370)
.....+ .|.+|++. +..+..++ +|.... .. ..... +... +|+ |++... ....+.++.++.
T Consensus 209 ~~e~s~--~v~v~~~~~~~g~~~~~~~~~~~~~~~~--~~-~~~~~---i~ispdg~~lyvsnr--~~~sI~vf~~d~~~ 278 (345)
T PF10282_consen 209 VNELSN--TVSVFDYDPSDGSLTEIQTISTLPEGFT--GE-NAPAE---IAISPDGRFLYVSNR--GSNSISVFDLDPAT 278 (345)
T ss_dssp EETTTT--EEEEEEEETTTTEEEEEEEEESCETTSC--SS-SSEEE---EEE-TTSSEEEEEEC--TTTEEEEEEECTTT
T ss_pred ecCCCC--cEEEEeecccCCceeEEEEeeecccccc--cc-CCcee---EEEecCCCEEEEEec--cCCEEEEEEEecCC
Confidence 555443 45555554 66665553 344322 11 01111 3333 566 555554 678999999965
Q ss_pred CceeEEEEecCCcceeeeeEEeeCCeEEEE--eCCCeEEEE--ECCCCcEEEEE
Q 037087 301 RSWTKQFTFGPFIETYQPLTFWRKGEFLLQ--SSDKRLVLY--DSTYEEMRDLG 350 (370)
Q Consensus 301 ~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~y--d~~~~~~~~v~ 350 (370)
+.-..+..+.......+-+.+..+|+.++. +.++.+.+| |.+++.++.+.
T Consensus 279 g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 279 GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 555555555432223566777778886654 456677776 55788888876
No 35
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.41 E-value=1.5 Score=38.69 Aligned_cols=127 Identities=13% Similarity=0.231 Sum_probs=76.9
Q ss_pred ccCCcceEEccEEEEEEeCCCCccEEEEEECCCccee-EeCCCCCCCc--c---ccccccCCCceEEEECCeEEEEEec-
Q 037087 215 FEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQ-VIQGPNIPQL--L---NYYESAMRPWMLGIYDDYLSILYSE- 287 (370)
Q Consensus 215 ~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~--~---~~~~~~~~~~~l~~~~g~L~~~~~~- 287 (370)
..++..|..||.+|+..... ..|+.||+.+++.. ...+|..... . ..+...+. +++.+..|-++...
T Consensus 69 ~~GtG~vVYngslYY~~~~s---~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD---~AvDE~GLWvIYat~ 142 (250)
T PF02191_consen 69 WQGTGHVVYNGSLYYNKYNS---RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDID---FAVDENGLWVIYATE 142 (250)
T ss_pred eccCCeEEECCcEEEEecCC---ceEEEEECcCCcEEEEEECCccccccccceecCCCceEE---EEEcCCCEEEEEecC
Confidence 34455889999999988765 37999999999988 7788875431 0 01112234 66777777776654
Q ss_pred CCCceEEEEEecC------CceeEEEEecCCcceeeeeEEeeCCeEEEEeC-----CCeEEEEECCCCcEEEEEEe
Q 037087 288 EMAHSFDLWIMKG------RSWTKQFTFGPFIETYQPLTFWRKGEFLLQSS-----DKRLVLYDSTYEEMRDLGIT 352 (370)
Q Consensus 288 ~~~~~l~IW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~-----~~~~~~yd~~~~~~~~v~~~ 352 (370)
...+.+.|=.|+. +.|..-+. .......+- -.|.|+.... ..--+.||..+++-+.+.+.
T Consensus 143 ~~~g~ivvskld~~tL~v~~tw~T~~~---k~~~~naFm--vCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 143 DNNGNIVVSKLDPETLSVEQTWNTSYP---KRSAGNAFM--VCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred CCCCcEEEEeeCcccCceEEEEEeccC---chhhcceee--EeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 3334577878876 55654321 111111111 1345554421 22357899998888777653
No 36
>smart00284 OLF Olfactomedin-like domains.
Probab=92.88 E-value=5.3 Score=35.26 Aligned_cols=126 Identities=18% Similarity=0.267 Sum_probs=75.2
Q ss_pred ccCCcceEEccEEEEEEeCCCCccEEEEEECCCcceeE-eCCCCCC-Cc-ccc---ccccCCCceEEEECCeEEEEEec-
Q 037087 215 FEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQV-IQGPNIP-QL-LNY---YESAMRPWMLGIYDDYLSILYSE- 287 (370)
Q Consensus 215 ~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~~~~~~-i~~P~~~-~~-~~~---~~~~~~~~~l~~~~g~L~~~~~~- 287 (370)
..+...|..||.+|+..... ..|+.||+.+++... ..+|... +. ..+ +...+. |++.+..|-++...
T Consensus 74 ~~GtG~VVYngslYY~~~~s---~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiD---lAvDE~GLWvIYat~ 147 (255)
T smart00284 74 GQGTGVVVYNGSLYFNKFNS---HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDID---LAVDENGLWVIYATE 147 (255)
T ss_pred cccccEEEECceEEEEecCC---ccEEEEECCCCcEEEEEecCccccccccccccCCCccEE---EEEcCCceEEEEecc
Confidence 34555899999999976554 379999999999864 4467532 21 011 122345 77777777766653
Q ss_pred CCCceEEEEEecC------CceeEEEEecCCcceeeeeEEeeCCeEEEEe-----CCCeEEEEECCCCcEEEEEE
Q 037087 288 EMAHSFDLWIMKG------RSWTKQFTFGPFIETYQPLTFWRKGEFLLQS-----SDKRLVLYDSTYEEMRDLGI 351 (370)
Q Consensus 288 ~~~~~l~IW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~-----~~~~~~~yd~~~~~~~~v~~ 351 (370)
...+.+.|=.|+. +.|..-+. .......+- -.|.|+... ...-.+.||..|++-+.+.+
T Consensus 148 ~~~g~ivvSkLnp~tL~ve~tW~T~~~---k~sa~naFm--vCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 148 QNAGKIVISKLNPATLTIENTWITTYN---KRSASNAFM--ICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred CCCCCEEEEeeCcccceEEEEEEcCCC---cccccccEE--EeeEEEEEccCCCCCcEEEEEEECCCCccceeee
Confidence 4557788888887 55655331 111111111 134554442 12346789999887766654
No 37
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=92.34 E-value=2.2 Score=39.77 Aligned_cols=145 Identities=13% Similarity=0.205 Sum_probs=83.9
Q ss_pred CcEEEEEcCCCceecCCCCCCCccccccCCcceEEc-cEEEEEEeCC-C--C------ccEEEEEECCCcceeEeCCCCC
Q 037087 189 SPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLN-GFCYWVVHRP-D--Y------YKEILKFSMTDEVFQVIQGPNI 258 (370)
Q Consensus 189 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~v~~~-G~lywl~~~~-~--~------~~~il~fD~~~~~~~~i~~P~~ 258 (370)
..+.+|+.+++.|+....|..|.- -...++|.+- | +-|+-... . + +.=+-.||+.+.+|..+.++.+
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~p--Rsshq~va~~s~-~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~ 174 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPP--RSSHQAVAVPSN-ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG 174 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCC--CccceeEEeccC-eEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence 356789999999999433332220 2244545554 6 45554433 1 1 1347889999999999998775
Q ss_pred CCccccccccCCCceEEEECCeEEEEEecCCCc-----eEEEEEec--CCceeEEEEec--CCcceeeeeEEeeCCeEEE
Q 037087 259 PQLLNYYESAMRPWMLGIYDDYLSILYSEEMAH-----SFDLWIMK--GRSWTKQFTFG--PFIETYQPLTFWRKGEFLL 329 (370)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~-----~l~IW~l~--~~~W~~~~~i~--~~~~~~~~~~~~~~~~ll~ 329 (370)
.. ... .-+ ++..+.+|.++..-.+.+ --+||+++ ...|.++-.=. |.+.-..-+.+...|.|++
T Consensus 175 PS--~RS--GHR---MvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~v 247 (521)
T KOG1230|consen 175 PS--PRS--GHR---MVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVV 247 (521)
T ss_pred CC--CCc--cce---eEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEE
Confidence 43 222 334 788899988877521111 23455555 38899877522 3222223344454666666
Q ss_pred EeC---------------CCeEEEEECCC
Q 037087 330 QSS---------------DKRLVLYDSTY 343 (370)
Q Consensus 330 ~~~---------------~~~~~~yd~~~ 343 (370)
-.. -.-++..++++
T Consensus 248 yGGYsK~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 248 YGGYSKQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred EcchhHhhhhhhhhcCceeeeeeeecCCc
Confidence 421 11367888887
No 38
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.98 E-value=14 Score=36.67 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=38.8
Q ss_pred CCCCCcHHHHHHHhccCCccccceeeecccchhhhcCChhhhH
Q 037087 10 GYGDLSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDPNFIY 52 (370)
Q Consensus 10 ~~~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~li~~p~F~~ 52 (370)
.+..||.++...||..|++++++.++.||+.|+.++.+.....
T Consensus 107 fi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 107 FLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 4668999999999999999999999999999999998766654
No 39
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=91.59 E-value=7.3 Score=34.07 Aligned_cols=109 Identities=15% Similarity=0.085 Sum_probs=68.1
Q ss_pred ceEE--ccEEEEEEeCCCCccEEEEEECCCcceeEeCCCCCCCccccccccCCCceEEE--ECCeEEEEEecCCCceEEE
Q 037087 220 DVYL--NGFCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGI--YDDYLSILYSEEMAHSFDL 295 (370)
Q Consensus 220 ~v~~--~G~lywl~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~--~~g~L~~~~~~~~~~~l~I 295 (370)
+++. +|.+||...... .|..+|+.+.+...+.+|.... +.. -+|+|.++.. ..+.+
T Consensus 5 p~~d~~~g~l~~~D~~~~---~i~~~~~~~~~~~~~~~~~~~G-------------~~~~~~~g~l~v~~~----~~~~~ 64 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGG---RIYRVDPDTGEVEVIDLPGPNG-------------MAFDRPDGRLYVADS----GGIAV 64 (246)
T ss_dssp EEEETTTTEEEEEETTTT---EEEEEETTTTEEEEEESSSEEE-------------EEEECTTSEEEEEET----TCEEE
T ss_pred eEEECCCCEEEEEEcCCC---EEEEEECCCCeEEEEecCCCce-------------EEEEccCCEEEEEEc----CceEE
Confidence 3444 699999976664 8999999999998887776211 232 3677766664 33333
Q ss_pred EEecCCceeEEEEecCCc-ce--eeeeEEeeCCeEEEEeCC---------CeEEEEECCCCcEEEE
Q 037087 296 WIMKGRSWTKQFTFGPFI-ET--YQPLTFWRKGEFLLQSSD---------KRLVLYDSTYEEMRDL 349 (370)
Q Consensus 296 W~l~~~~W~~~~~i~~~~-~~--~~~~~~~~~~~ll~~~~~---------~~~~~yd~~~~~~~~v 349 (370)
..++.+.+.......... .. ..-+++..+|.|++.... ++++.++.+ ++.+.+
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 333337777777763111 22 334666778888887321 468999998 665554
No 40
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.92 E-value=4.5 Score=37.08 Aligned_cols=111 Identities=20% Similarity=0.282 Sum_probs=70.9
Q ss_pred CCcEEEEEcCCCceecCCCCCCCccccccCCcceEEcc-EEEEEEeCC--------------------------------
Q 037087 188 FSPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNG-FCYWVVHRP-------------------------------- 234 (370)
Q Consensus 188 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~-------------------------------- 234 (370)
...+..|++.+++|....+ ..|.+ +.+..++..+| .+|+.....
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t-~sP~g--l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~ 188 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDT-RSPTG--LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKK 188 (381)
T ss_pred eeeeEEecCCCChhheecc-ccccc--cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCC
Confidence 4567789999999998432 23332 33444555565 788875432
Q ss_pred ----CCccEEEEEECCCcceeEeC-CCCCCCccccccccCCCceEEEECCeEEEEEec--CCCceEEEEEecC----Cce
Q 037087 235 ----DYYKEILKFSMTDEVFQVIQ-GPNIPQLLNYYESAMRPWMLGIYDDYLSILYSE--EMAHSFDLWIMKG----RSW 303 (370)
Q Consensus 235 ----~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~--~~~~~l~IW~l~~----~~W 303 (370)
.....+++||+.+++|+..- .|.... .... .+..+++|.++... ..-++-++|+.+- ..|
T Consensus 189 ~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~------aGsa---~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w 259 (381)
T COG3055 189 AEDYFFNKEVLSYDPSTNQWRNLGENPFYGN------AGSA---VVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKW 259 (381)
T ss_pred HHHhcccccccccccccchhhhcCcCcccCc------cCcc---eeecCCeEEEEcceecCCccccceeEEEeccCceee
Confidence 01357999999999999886 566443 1122 44556678888864 3445555665553 889
Q ss_pred eEEEEec
Q 037087 304 TKQFTFG 310 (370)
Q Consensus 304 ~~~~~i~ 310 (370)
.++-..+
T Consensus 260 ~~l~~lp 266 (381)
T COG3055 260 LKLSDLP 266 (381)
T ss_pred eeccCCC
Confidence 8887654
No 41
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=90.87 E-value=13 Score=34.11 Aligned_cols=156 Identities=12% Similarity=0.033 Sum_probs=86.0
Q ss_pred CCCcEEEEEcCCCceecCCCCCCCccccccCCc-ceEEccEEEEEEeCCCCccEEEEEECCCcceeEeC----CCCCCCc
Q 037087 187 EFSPAAVYNFTTNCWRDLGGFPMSRHYRFEGAD-DVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVIQ----GPNIPQL 261 (370)
Q Consensus 187 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~il~fD~~~~~~~~i~----~P~~~~~ 261 (370)
+.-++.+|+...+.-.......++.+ ..++- ..+=||.+-++..+-.+...++.+|....++..++ +|.+...
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v~~G--~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEVKPG--AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred CCceEEEEEcccCccccccccccCCC--CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC
Confidence 36688899999776655221122221 11111 44557877666666555566777777778887775 5776552
Q ss_pred cccccccCCCceEEEECCe-EEEEEecCCCceEEEEEecC--CceeEEEEecCCcceeeeeEEeeCCeEEEE--eCCC--
Q 037087 262 LNYYESAMRPWMLGIYDDY-LSILYSEEMAHSFDLWIMKG--RSWTKQFTFGPFIETYQPLTFWRKGEFLLQ--SSDK-- 334 (370)
Q Consensus 262 ~~~~~~~~~~~~l~~~~g~-L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~--~~~~-- 334 (370)
......+. +.-+|+ |++... ....+.+...++ +.=..+...+....+.+-+-+..+|++|+. ++++
T Consensus 243 -~~~~aaIh----is~dGrFLYasNR--g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i 315 (346)
T COG2706 243 -TNWAAAIH----ISPDGRFLYASNR--GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNI 315 (346)
T ss_pred -CCceeEEE----ECCCCCEEEEecC--CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcE
Confidence 11111122 344666 444443 445666666666 322222222222122455666778888776 3444
Q ss_pred eEEEEECCCCcEEEEEE
Q 037087 335 RLVLYDSTYEEMRDLGI 351 (370)
Q Consensus 335 ~~~~yd~~~~~~~~v~~ 351 (370)
.+|--|.+|+++.++.-
T Consensus 316 ~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 316 TVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEEEcCCCceEEeccc
Confidence 35666778888888764
No 42
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.58 E-value=11 Score=32.91 Aligned_cols=193 Identities=15% Similarity=0.078 Sum_probs=107.2
Q ss_pred eeecceEEEccC--CCeeEEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCC
Q 037087 111 GPYDGIFLLLGD--HTHINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEF 188 (370)
Q Consensus 111 ~s~nGLl~~~~~--~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 188 (370)
+..+|-|.+.+- .++ +.++|.+++...+..+. ..++.++...+.+-|. . .
T Consensus 8 d~~~g~l~~~D~~~~~i-~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g~l~v~-~--------------~ 59 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRI-YRVDPDTGEVEVIDLPG------------PNGMAFDRPDGRLYVA-D--------------S 59 (246)
T ss_dssp ETTTTEEEEEETTTTEE-EEEETTTTEEEEEESSS------------EEEEEEECTTSEEEEE-E--------------T
T ss_pred ECCCCEEEEEEcCCCEE-EEEECCCCeEEEEecCC------------CceEEEEccCCEEEEE-E--------------c
Confidence 344566666653 345 89999998876644332 3466666333333221 1 3
Q ss_pred CcEEEEEcCCCceecCCCC---CCCccccccCCc-ceEEccEEEEEEeCCC---Cc--cEEEEEECCCcceeEeC----C
Q 037087 189 SPAAVYNFTTNCWRDLGGF---PMSRHYRFEGAD-DVYLNGFCYWVVHRPD---YY--KEILKFSMTDEVFQVIQ----G 255 (370)
Q Consensus 189 ~~~~vyss~t~~W~~~~~~---~~~~~~~~~~~~-~v~~~G~lywl~~~~~---~~--~~il~fD~~~~~~~~i~----~ 255 (370)
....+++..++.++..... ..+. ...+. .+--+|.+|.-..... .. ..|..+|.. .+...+. .
T Consensus 60 ~~~~~~d~~~g~~~~~~~~~~~~~~~---~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~ 135 (246)
T PF08450_consen 60 GGIAVVDPDTGKVTVLADLPDGGVPF---NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF 135 (246)
T ss_dssp TCEEEEETTTTEEEEEEEEETTCSCT---EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS
T ss_pred CceEEEecCCCcEEEEeeccCCCccc---CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc
Confidence 4556778889988872211 1122 22333 5566899777655441 11 479999999 4443331 2
Q ss_pred CCCCCccccccccCCCceEE-EECCe-EEEEEecCCCceEEEEEecC--CceeEEEEe-cCCcc--eeeeeEEeeCCeEE
Q 037087 256 PNIPQLLNYYESAMRPWMLG-IYDDY-LSILYSEEMAHSFDLWIMKG--RSWTKQFTF-GPFIE--TYQPLTFWRKGEFL 328 (370)
Q Consensus 256 P~~~~~~~~~~~~~~~~~l~-~~~g~-L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i-~~~~~--~~~~~~~~~~~~ll 328 (370)
|.+ ++ .-+|+ |++... ....+....++. ..+.....+ +.... ...-+++..+|.|+
T Consensus 136 pNG---------------i~~s~dg~~lyv~ds--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 136 PNG---------------IAFSPDGKTLYVADS--FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLW 198 (246)
T ss_dssp EEE---------------EEEETTSSEEEEEET--TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EE
T ss_pred ccc---------------eEECCcchheeeccc--ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEE
Confidence 221 33 33454 566555 445544444443 335544433 22222 34457777889998
Q ss_pred EE-eCCCeEEEEECCCCcEEEEEEe
Q 037087 329 LQ-SSDKRLVLYDSTYEEMRDLGIT 352 (370)
Q Consensus 329 ~~-~~~~~~~~yd~~~~~~~~v~~~ 352 (370)
+. ...++|..||++.+.+++|.+.
T Consensus 199 va~~~~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 199 VADWGGGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp EEEETTTEEEEEETTSCEEEEEE-S
T ss_pred EEEcCCCEEEEECCCccEEEEEcCC
Confidence 87 4577999999997778888887
No 43
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=90.36 E-value=8.3 Score=33.38 Aligned_cols=120 Identities=12% Similarity=0.145 Sum_probs=68.2
Q ss_pred EEccEEEEEEeCCCCccEEEEEECCCcceeEeCCCCCCCccccccc-cCCCceEEEE--CC--eE-EEEEec--CCCceE
Q 037087 222 YLNGFCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYES-AMRPWMLGIY--DD--YL-SILYSE--EMAHSF 293 (370)
Q Consensus 222 ~~~G~lywl~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~-~~~~~~l~~~--~g--~L-~~~~~~--~~~~~l 293 (370)
.+||.+ .+... ..+...|+.++++..++.|.... ..... ... ++-. .+ |+ .+.... .....+
T Consensus 3 sCnGLl-c~~~~----~~~~V~NP~T~~~~~LP~~~~~~--~~~~~~~~~---~G~d~~~~~YKVv~~~~~~~~~~~~~~ 72 (230)
T TIGR01640 3 PCDGLI-CFSYG----KRLVVWNPSTGQSRWLPTPKSRR--SNKESDTYF---LGYDPIEKQYKVLCFSDRSGNRNQSEH 72 (230)
T ss_pred ccceEE-EEecC----CcEEEECCCCCCEEecCCCCCcc--cccccceEE---EeecccCCcEEEEEEEeecCCCCCccE
Confidence 568888 34333 26999999999999998665321 00111 011 2211 11 22 222211 134578
Q ss_pred EEEEecCCceeEEEEecCCcceeeeeEEeeCCeEEEE-eCC-----CeEEEEECCCCcEEE-EEEe
Q 037087 294 DLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQ-SSD-----KRLVLYDSTYEEMRD-LGIT 352 (370)
Q Consensus 294 ~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~-~~~-----~~~~~yd~~~~~~~~-v~~~ 352 (370)
+|..++..+|.......+....... ++.-+|.+... ... ..++.||++++++++ +..+
T Consensus 73 ~Vys~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 73 QVYTLGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred EEEEeCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 8999988899987632211111222 44457777544 221 169999999999995 6654
No 44
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=90.28 E-value=2.2 Score=33.52 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=50.0
Q ss_pred EEEEEECCCc--ceeEeCCCCCCCccccc-------cccCCCceEEEECCeEEEEEecC--------CCceEEEEEecC-
Q 037087 239 EILKFSMTDE--VFQVIQGPNIPQLLNYY-------ESAMRPWMLGIYDDYLSILYSEE--------MAHSFDLWIMKG- 300 (370)
Q Consensus 239 ~il~fD~~~~--~~~~i~~P~~~~~~~~~-------~~~~~~~~l~~~~g~L~~~~~~~--------~~~~l~IW~l~~- 300 (370)
.||.+|+-.+ .++.+++|......... ..... +++.+|+|-++.... ....+.+|.|..
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~---v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~ 83 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRD---VGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDP 83 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCce---EEecCCCEEEEEEecccCCCcccCCcEEEEEEeccC
Confidence 5899998765 67889998865421111 12233 778999998888651 355899999997
Q ss_pred ----CceeEEEEecC
Q 037087 301 ----RSWTKQFTFGP 311 (370)
Q Consensus 301 ----~~W~~~~~i~~ 311 (370)
..|.+-+.++.
T Consensus 84 ~~~~~~W~~d~~v~~ 98 (131)
T PF07762_consen 84 EGSSWEWKKDCEVDL 98 (131)
T ss_pred CCCCCCEEEeEEEEh
Confidence 78999998864
No 45
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=89.16 E-value=14 Score=31.85 Aligned_cols=193 Identities=10% Similarity=0.016 Sum_probs=92.6
Q ss_pred ecceEEEccCCCeeEEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCCcEE
Q 037087 113 YDGIFLLLGDHTHINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAA 192 (370)
Q Consensus 113 ~nGLl~~~~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~ 192 (370)
.+|.+.+......++..|+.|++...--..+.. .. .. ... .+=+|+... . ...+.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~----~~--~~--~~~-----~~~~v~v~~----~--------~~~l~ 89 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP----IS--GA--PVV-----DGGRVYVGT----S--------DGSLY 89 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC----GG--SG--EEE-----ETTEEEEEE----T--------TSEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc----cc--ce--eee-----ccccccccc----c--------eeeeE
Confidence 577777775544449999999876532221111 00 10 111 112222221 1 22566
Q ss_pred EEEcCCC--cee-cCCC-CCCCccccccCCcceEEccEEEEEEeCCCCccEEEEEECCCcceeE-eCC--CCCCCccc-c
Q 037087 193 VYNFTTN--CWR-DLGG-FPMSRHYRFEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQV-IQG--PNIPQLLN-Y 264 (370)
Q Consensus 193 vyss~t~--~W~-~~~~-~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~~~~~~-i~~--P~~~~~~~-~ 264 (370)
.++..++ .|+ .... +.... .........++.+|.....+ .|.++|+.+.+... .+. |....... .
T Consensus 90 ~~d~~tG~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g----~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 162 (238)
T PF13360_consen 90 ALDAKTGKVLWSIYLTSSPPAGV---RSSSSPAVDGDRLYVGTSSG----KLVALDPKTGKLLWKYPVGEPRGSSPISSF 162 (238)
T ss_dssp EEETTTSCEEEEEEE-SSCTCST---B--SEEEEETTEEEEEETCS----EEEEEETTTTEEEEEEESSTT-SS--EEEE
T ss_pred ecccCCcceeeeecccccccccc---ccccCceEecCEEEEEeccC----cEEEEecCCCcEEEEeecCCCCCCcceeee
Confidence 6776666 588 3221 12221 11122333355666655444 79999998775522 233 33211000 0
Q ss_pred ccccCCCceEEEECCeEEEEEecCCCceEEEEEecCC--ceeEEEEecCCcceeeeeEEeeCCeEEEEeCCCeEEEEECC
Q 037087 265 YESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKGR--SWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDST 342 (370)
Q Consensus 265 ~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~~--~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~ 342 (370)
...... ++..+|.+++... ....+.+ -++.+ .|... +. . ........++.+++...+++++.+|++
T Consensus 163 ~~~~~~---~~~~~~~v~~~~~--~g~~~~~-d~~tg~~~w~~~--~~--~--~~~~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 163 SDINGS---PVISDGRVYVSSG--DGRVVAV-DLATGEKLWSKP--IS--G--IYSLPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp TTEEEE---EECCTTEEEEECC--TSSEEEE-ETTTTEEEEEEC--SS-----ECECEECCCTEEEEEETTTEEEEEETT
T ss_pred cccccc---eEEECCEEEEEcC--CCeEEEE-ECCCCCEEEEec--CC--C--ccCCceeeCCEEEEEeCCCEEEEEECC
Confidence 000112 3344665655554 3333444 44442 36222 21 1 111123346667777778999999999
Q ss_pred CCcEEEE
Q 037087 343 YEEMRDL 349 (370)
Q Consensus 343 ~~~~~~v 349 (370)
|++..+.
T Consensus 231 tG~~~W~ 237 (238)
T PF13360_consen 231 TGKVVWQ 237 (238)
T ss_dssp TTEEEEE
T ss_pred CCCEEeE
Confidence 9987654
No 46
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=87.72 E-value=23 Score=32.84 Aligned_cols=115 Identities=14% Similarity=0.213 Sum_probs=70.0
Q ss_pred ccEEEEEEeCCCCccEEEEEECCCcc--e---eEeCCCCCCCccccccccCCCceEE-EECCeEEEEEecCCCceEEEEE
Q 037087 224 NGFCYWVVHRPDYYKEILKFSMTDEV--F---QVIQGPNIPQLLNYYESAMRPWMLG-IYDDYLSILYSEEMAHSFDLWI 297 (370)
Q Consensus 224 ~G~lywl~~~~~~~~~il~fD~~~~~--~---~~i~~P~~~~~~~~~~~~~~~~~l~-~~~g~L~~~~~~~~~~~l~IW~ 297 (370)
+|...|....+. ..|..|++..+. + ..+++|.+.. ... +. .-+|+...+.. +....+.+..
T Consensus 154 dg~~v~v~dlG~--D~v~~~~~~~~~~~l~~~~~~~~~~G~G-----PRh-----~~f~pdg~~~Yv~~-e~s~~v~v~~ 220 (345)
T PF10282_consen 154 DGRFVYVPDLGA--DRVYVYDIDDDTGKLTPVDSIKVPPGSG-----PRH-----LAFSPDGKYAYVVN-ELSNTVSVFD 220 (345)
T ss_dssp TSSEEEEEETTT--TEEEEEEE-TTS-TEEEEEEEECSTTSS-----EEE-----EEE-TTSSEEEEEE-TTTTEEEEEE
T ss_pred CCCEEEEEecCC--CEEEEEEEeCCCceEEEeeccccccCCC-----CcE-----EEEcCCcCEEEEec-CCCCcEEEEe
Confidence 577777776654 467777776554 4 3345666432 111 33 33566444444 3778999999
Q ss_pred ecC--CceeEEEEecCCcc------eeeeeEEeeCCeEEEE--eCCCeEEEEEC--CCCcEEEEEE
Q 037087 298 MKG--RSWTKQFTFGPFIE------TYQPLTFWRKGEFLLQ--SSDKRLVLYDS--TYEEMRDLGI 351 (370)
Q Consensus 298 l~~--~~W~~~~~i~~~~~------~~~~~~~~~~~~ll~~--~~~~~~~~yd~--~~~~~~~v~~ 351 (370)
++. ..+.....+...+. ...-+.+..+|+.++. ...+.|.+|++ ++++++.++.
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 994 77777777764321 2445777778876654 44567888887 5678887764
No 47
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=87.61 E-value=9.4 Score=36.17 Aligned_cols=116 Identities=12% Similarity=0.140 Sum_probs=71.4
Q ss_pred ceEEccE-EEEEEeCCCCccEEEEEECCCcceeEeCCCCCCCccccccccCCCceEEEE-CCeEEEEEecCCCceEEEEE
Q 037087 220 DVYLNGF-CYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIY-DDYLSILYSEEMAHSFDLWI 297 (370)
Q Consensus 220 ~v~~~G~-lywl~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~-~g~L~~~~~~~~~~~l~IW~ 297 (370)
..+-+|. .-+...+. .++.+||+.+.++..+..|.+... . ..-+ .-+. ++...++. +..+.+.|-.
T Consensus 264 ~f~p~G~~~i~~s~rr---ky~ysyDle~ak~~k~~~~~g~e~--~--~~e~---FeVShd~~fia~~--G~~G~I~lLh 331 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRR---KYLYSYDLETAKVTKLKPPYGVEE--K--SMER---FEVSHDSNFIAIA--GNNGHIHLLH 331 (514)
T ss_pred eecCCCceEEEecccc---eEEEEeeccccccccccCCCCccc--c--hhhe---eEecCCCCeEEEc--ccCceEEeeh
Confidence 3444666 44444444 489999999999999988876541 1 1111 2222 33322222 2456666655
Q ss_pred ecCCceeEEEEecCCcceeeeeEEeeCCe-EEEEeCCCeEEEEECCCCcEEEEE
Q 037087 298 MKGRSWTKQFTFGPFIETYQPLTFWRKGE-FLLQSSDKRLVLYDSTYEEMRDLG 350 (370)
Q Consensus 298 l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~yd~~~~~~~~v~ 350 (370)
.+..+|..-++|. +....+.+..+++ |+....+++|+++|++++......
T Consensus 332 akT~eli~s~Kie---G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 332 AKTKELITSFKIE---GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred hhhhhhhheeeec---cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 5557788777775 3455566666665 555667889999999998655443
No 48
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.39 E-value=12 Score=35.75 Aligned_cols=122 Identities=12% Similarity=0.129 Sum_probs=68.3
Q ss_pred ceEEccEEEEEEeCCCCccEEEEEECCCcc---eeEeCCCCCCCccccccccCCCceEEEECCeEEEEEecCCCceEEEE
Q 037087 220 DVYLNGFCYWVVHRPDYYKEILKFSMTDEV---FQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLW 296 (370)
Q Consensus 220 ~v~~~G~lywl~~~~~~~~~il~fD~~~~~---~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW 296 (370)
.-+.++.+|.++........|++.|+.+-. +..+-.|.... ..-.. +...++.|.+.........+.|+
T Consensus 283 v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~-----~~l~~---~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 283 VDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED-----VSLED---VSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp EEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS-----EEEEE---EEEETTEEEEEEEETTEEEEEEE
T ss_pred EEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc-----eeEEE---EEEECCEEEEEEEECCccEEEEE
Confidence 335577888888776556899999998764 44332333211 01111 45678888888875555666666
Q ss_pred EecCCceeEEEEecCCcceeeeeEE-eeCCeEEEEe----CCCeEEEEECCCCcEEEEE
Q 037087 297 IMKGRSWTKQFTFGPFIETYQPLTF-WRKGEFLLQS----SDKRLVLYDSTYEEMRDLG 350 (370)
Q Consensus 297 ~l~~~~W~~~~~i~~~~~~~~~~~~-~~~~~ll~~~----~~~~~~~yd~~~~~~~~v~ 350 (370)
-++ ..|.....-.+..+....+.. .++.+++|.. ....++.||+++++.+.+.
T Consensus 355 ~~~-~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 355 DLD-DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred ECC-CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 665 245544432232221122221 1245666653 2457999999999998775
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.13 E-value=0.17 Score=47.14 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=35.1
Q ss_pred CCCCcHHHHHHHhccCCccccceeeecccchhhhcCCh
Q 037087 11 YGDLSDDVMVETLSRLPVKSLMRFRCVCKSWYCLVKDP 48 (370)
Q Consensus 11 ~~~LP~Dll~eIL~rLp~~sl~r~~~VcK~W~~li~~p 48 (370)
.-.||.+++..||+-|..+++.|++.+||.|+.+..|.
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 45799999999999999999999999999999988764
No 50
>PF13964 Kelch_6: Kelch motif
Probab=86.45 E-value=1.5 Score=27.66 Aligned_cols=36 Identities=11% Similarity=0.279 Sum_probs=30.1
Q ss_pred cceEEccEEEEEEeCCC---CccEEEEEECCCcceeEeC
Q 037087 219 DDVYLNGFCYWVVHRPD---YYKEILKFSMTDEVFQVIQ 254 (370)
Q Consensus 219 ~~v~~~G~lywl~~~~~---~~~~il~fD~~~~~~~~i~ 254 (370)
+.+.++|.||.+..... ....+..||+.+++|+.++
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 37899999999987653 2468999999999999985
No 51
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=83.94 E-value=18 Score=33.40 Aligned_cols=119 Identities=12% Similarity=0.180 Sum_probs=67.7
Q ss_pred ccEEEEEEeCCCCccEEEEEECCCcceeEeC-CCCCCCccccccccCCCceEEEE---CCeEEEEEec-----CCCceEE
Q 037087 224 NGFCYWVVHRPDYYKEILKFSMTDEVFQVIQ-GPNIPQLLNYYESAMRPWMLGIY---DDYLSILYSE-----EMAHSFD 294 (370)
Q Consensus 224 ~G~lywl~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~l~~~---~g~L~~~~~~-----~~~~~l~ 294 (370)
+|.+||.+..+ .|...|++.+.....+ .+.....-..++-++.=|++.-+ .|+|+++... .....=+
T Consensus 195 ~~~~~F~Sy~G----~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte 270 (342)
T PF06433_consen 195 GGRLYFVSYEG----NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE 270 (342)
T ss_dssp TTEEEEEBTTS----EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred CCeEEEEecCC----EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence 36899988887 6999999988654432 11111000001111112335444 4788877642 2345788
Q ss_pred EEEecCCceeEEEEecCCcceeeeeEEeeCCe-EEEE--eCCCeEEEEECCCCcEE
Q 037087 295 LWIMKGRSWTKQFTFGPFIETYQPLTFWRKGE-FLLQ--SSDKRLVLYDSTYEEMR 347 (370)
Q Consensus 295 IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-ll~~--~~~~~~~~yd~~~~~~~ 347 (370)
||+++-..=.++.+|++.. -...+.+.++++ +|+. ..++.+++||..|++..
T Consensus 271 VWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred EEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 9999984446677776432 122467777665 5553 34578999999997643
No 52
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=82.41 E-value=31 Score=29.59 Aligned_cols=135 Identities=12% Similarity=0.011 Sum_probs=73.4
Q ss_pred cEEEEEcCCC--ceecCCCCCCCccccccCCcceEEccEEEEEEeCCCCccEEEEEECCCcce-eEeCCCCCCCcccccc
Q 037087 190 PAAVYNFTTN--CWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVF-QVIQGPNIPQLLNYYE 266 (370)
Q Consensus 190 ~~~vyss~t~--~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~ 266 (370)
.+..++..++ -|+....+.... .....+..+|.+|-..... .|.++|..+.+. ....++....
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~----~l~~~d~~tG~~~W~~~~~~~~~------ 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGG----PVATAVPDGGRVYVASGDG----NLYALDAKTGKVLWRFDLPGPIS------ 69 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSS----EEETEEEETTEEEEEETTS----EEEEEETTTSEEEEEEECSSCGG------
T ss_pred EEEEEECCCCCEEEEEECCCCCCC----ccceEEEeCCEEEEEcCCC----EEEEEECCCCCEEEEeecccccc------
Confidence 4567777776 488732111111 1111455788888875444 799999866654 3344444322
Q ss_pred ccCCCceEEEECCeEEEEEecCCCceEEEEEec--C--CceeE-EEEecCCcceeeeeEEeeCCeEEEEeCCCeEEEEEC
Q 037087 267 SAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMK--G--RSWTK-QFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDS 341 (370)
Q Consensus 267 ~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~--~--~~W~~-~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~ 341 (370)
.. ....++.+++... . . .|+.++ + ..|.. ...-+.............++.+++...++.++.+|+
T Consensus 70 --~~---~~~~~~~v~v~~~--~-~--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 70 --GA---PVVDGGRVYVGTS--D-G--SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp --SG---EEEETTEEEEEET--T-S--EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred --ce---eeecccccccccc--e-e--eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec
Confidence 11 3566777766663 2 2 444444 3 66774 332122111111112223666777777889999999
Q ss_pred CCCcEEE
Q 037087 342 TYEEMRD 348 (370)
Q Consensus 342 ~~~~~~~ 348 (370)
++++...
T Consensus 140 ~tG~~~w 146 (238)
T PF13360_consen 140 KTGKLLW 146 (238)
T ss_dssp TTTEEEE
T ss_pred CCCcEEE
Confidence 9988743
No 53
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=80.89 E-value=48 Score=30.83 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=66.2
Q ss_pred ceEEEc-cCCCeeEEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCCcEEE
Q 037087 115 GIFLLL-GDHTHINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAV 193 (370)
Q Consensus 115 GLl~~~-~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~v 193 (370)
.-|++. ..... .|.++.|+....+|...... ... +.+.. .+. ++.+.......... ......+|+
T Consensus 77 skIv~~d~~~~t-~vyDt~t~av~~~P~l~~pk-----~~p--isv~V---G~~--LY~m~~~~~~~~~~-~~~~~~FE~ 142 (342)
T PF07893_consen 77 SKIVAVDQSGRT-LVYDTDTRAVATGPRLHSPK-----RCP--ISVSV---GDK--LYAMDRSPFPEPAG-RPDFPCFEA 142 (342)
T ss_pred CeEEEEcCCCCe-EEEECCCCeEeccCCCCCCC-----cce--EEEEe---CCe--EEEeeccCcccccc-CccceeEEE
Confidence 334333 34456 99999999999888855421 111 22221 122 44443211110000 000014455
Q ss_pred E--E--------cCCCceecCCCCCCCcccccc---CCc-ceEEccEEEEEEeCCCCccEEEEEECCCcceeEe---CCC
Q 037087 194 Y--N--------FTTNCWRDLGGFPMSRHYRFE---GAD-DVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVI---QGP 256 (370)
Q Consensus 194 y--s--------s~t~~W~~~~~~~~~~~~~~~---~~~-~v~~~G~lywl~~~~~~~~~il~fD~~~~~~~~i---~~P 256 (370)
+ + .++.+|+..+.|+.....+.. -.+ +|+ +|.--|+...+.. ..-.+||..+.+|+.. .||
T Consensus 143 l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~-~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 143 LVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRR-WGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred eccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCc-eEEEEEEcCCcceeeccceecC
Confidence 4 2 233467774433332210000 112 666 8988888655410 2589999999999887 578
Q ss_pred CCCC
Q 037087 257 NIPQ 260 (370)
Q Consensus 257 ~~~~ 260 (370)
....
T Consensus 221 F~G~ 224 (342)
T PF07893_consen 221 FHGQ 224 (342)
T ss_pred cCCc
Confidence 7543
No 54
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.13 E-value=7.5 Score=21.73 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=20.9
Q ss_pred eCCeEEEEeCCCeEEEEECCCCcEEE
Q 037087 323 RKGEFLLQSSDKRLVLYDSTYEEMRD 348 (370)
Q Consensus 323 ~~~~ll~~~~~~~~~~yd~~~~~~~~ 348 (370)
.++.+++...++.++.+|.++++..+
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEE
Confidence 35567777788999999999988764
No 55
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=78.98 E-value=59 Score=30.73 Aligned_cols=106 Identities=8% Similarity=0.116 Sum_probs=58.4
Q ss_pred cceEEccEEEEEEeCCCCccEEEEEECCCcceeEe-CCCCCCCccccccccCCCceEEEECCeEEEEEecCCCceEEEEE
Q 037087 219 DDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVI-QGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWI 297 (370)
Q Consensus 219 ~~v~~~G~lywl~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~ 297 (370)
.++..+|.+|.....+ .+.++|..+.+-.+. ++... .. +...+|.|++...+ ..+....
T Consensus 251 sP~v~~~~vy~~~~~g----~l~ald~~tG~~~W~~~~~~~----------~~---~~~~~~~vy~~~~~---g~l~ald 310 (394)
T PRK11138 251 TPVVVGGVVYALAYNG----NLVALDLRSGQIVWKREYGSV----------ND---FAVDGGRIYLVDQN---DRVYALD 310 (394)
T ss_pred CcEEECCEEEEEEcCC----eEEEEECCCCCEEEeecCCCc----------cC---cEEECCEEEEEcCC---CeEEEEE
Confidence 3778899999877655 699999988654332 22110 01 33445555554431 2222222
Q ss_pred ecC--CceeEEEEecCCcceeeeeEEeeCCeEEEEeCCCeEEEEECCCCcEEE
Q 037087 298 MKG--RSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEEMRD 348 (370)
Q Consensus 298 l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~~~~ 348 (370)
.++ ..|.... .. ......|+. .++.|++...++.++.+|.++++...
T Consensus 311 ~~tG~~~W~~~~-~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 311 TRGGVELWSQSD-LL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred CCCCcEEEcccc-cC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 222 2343211 00 001223433 37788888888899999999988653
No 56
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=77.71 E-value=6.9 Score=24.52 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=29.9
Q ss_pred CcceEEccEEEEEEeC--C---CCccEEEEEECCCcceeEeCC
Q 037087 218 ADDVYLNGFCYWVVHR--P---DYYKEILKFSMTDEVFQVIQG 255 (370)
Q Consensus 218 ~~~v~~~G~lywl~~~--~---~~~~~il~fD~~~~~~~~i~~ 255 (370)
..++.++|+||-.... . .....+-.||+++.+|+.++.
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 3478899999999877 1 224578899999999998764
No 57
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=77.49 E-value=22 Score=31.66 Aligned_cols=121 Identities=13% Similarity=0.139 Sum_probs=69.8
Q ss_pred eeeeecceEEEccC-CCeeEEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCC
Q 037087 109 TTGPYDGIFLLLGD-HTHINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDE 187 (370)
Q Consensus 109 ~~~s~nGLl~~~~~-~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~ 187 (370)
+...-+|-|-+.+- ..++.-.||.++.-.++|.+..... ..-.+.-|+ -.-+++.+ ..
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~-------gsRriwsdp----ig~~witt----------wg 252 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKA-------GSRRIWSDP----IGRAWITT----------WG 252 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcceecCCCcccc-------cccccccCc----cCcEEEec----------cC
Confidence 34444555554432 2444778999998888887654211 111222222 11122221 13
Q ss_pred CCcEEEEEcCCCceecCCCCCCCccccccCCc-ceEEccE-EEEEEeCCCCccEEEEEECCCcceeEeCCCCC
Q 037087 188 FSPAAVYNFTTNCWRDLGGFPMSRHYRFEGAD-DVYLNGF-CYWVVHRPDYYKEILKFSMTDEVFQVIQGPNI 258 (370)
Q Consensus 188 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~-~v~~~G~-lywl~~~~~~~~~il~fD~~~~~~~~i~~P~~ 258 (370)
.-.++-|+..+.+|.+-. +|. ..... ++++|.. .-|+..-+. ..|..||.++++|+++++|..
T Consensus 253 ~g~l~rfdPs~~sW~eyp---LPg---s~arpys~rVD~~grVW~sea~a--gai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYP---LPG---SKARPYSMRVDRHGRVWLSEADA--GAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred CceeeEeCcccccceeee---CCC---CCCCcceeeeccCCcEEeecccc--CceeecCcccceEEEecCCCC
Confidence 567788999999999832 222 22222 5566542 456644332 489999999999999999874
No 58
>smart00612 Kelch Kelch domain.
Probab=77.47 E-value=3.9 Score=24.87 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=15.4
Q ss_pred CCcEEEEEcCCCceecCC
Q 037087 188 FSPAAVYNFTTNCWRDLG 205 (370)
Q Consensus 188 ~~~~~vyss~t~~W~~~~ 205 (370)
...+++|+.+++.|....
T Consensus 14 ~~~v~~yd~~~~~W~~~~ 31 (47)
T smart00612 14 LKSVEVYDPETNKWTPLP 31 (47)
T ss_pred eeeEEEECCCCCeEccCC
Confidence 567899999999999754
No 59
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=76.82 E-value=72 Score=30.60 Aligned_cols=153 Identities=13% Similarity=0.153 Sum_probs=85.6
Q ss_pred CCcEEEEEcCCCceec-CCCCCCCccccccCC--c-ceEEccEEEEEEeCCCCccEEEEEECCCc-ceeEeCCCCCCCcc
Q 037087 188 FSPAAVYNFTTNCWRD-LGGFPMSRHYRFEGA--D-DVYLNGFCYWVVHRPDYYKEILKFSMTDE-VFQVIQGPNIPQLL 262 (370)
Q Consensus 188 ~~~~~vyss~t~~W~~-~~~~~~~~~~~~~~~--~-~v~~~G~lywl~~~~~~~~~il~fD~~~~-~~~~i~~P~~~~~~ 262 (370)
...+++|++.+.+=+. ... +... + .+..||.+.-.+...+ .|=.||..+. ..+.+..-...
T Consensus 47 S~rvqly~~~~~~~~k~~sr--------Fk~~v~s~~fR~DG~LlaaGD~sG---~V~vfD~k~r~iLR~~~ah~ap--- 112 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSR--------FKDVVYSVDFRSDGRLLAAGDESG---HVKVFDMKSRVILRQLYAHQAP--- 112 (487)
T ss_pred ccEEEEEecchhhhhhhHHh--------hccceeEEEeecCCeEEEccCCcC---cEEEeccccHHHHHHHhhccCc---
Confidence 5788999998865333 111 1111 1 4556799887766653 7888995552 22333221110
Q ss_pred ccccccCCCceEEEECCeEEEEEecCCCceEEEEEecCCceeEEEEecCCcceeeeeEEe-eCCeEEEE-eCCCeEEEEE
Q 037087 263 NYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFW-RKGEFLLQ-SSDKRLVLYD 340 (370)
Q Consensus 263 ~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~-~~~~ll~~-~~~~~~~~yd 340 (370)
.+... ....++.+.+.+. +.....+|.+.... . +..+.-..++.+-..+. .++-|++. ..++.+=.||
T Consensus 113 ---v~~~~---f~~~d~t~l~s~s--Dd~v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 113 ---VHVTK---FSPQDNTMLVSGS--DDKVVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred ---eeEEE---ecccCCeEEEecC--CCceEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 01222 3456666666665 66889999999832 2 44454333333333333 36668877 4577899999
Q ss_pred CCCCcEEEEEEe-cceeeEEEeeec
Q 037087 341 STYEEMRDLGIT-GLWFSVNILKES 364 (370)
Q Consensus 341 ~~~~~~~~v~~~-~~~~~~~~~~~s 364 (370)
.++..-+.++++ |.+-.-+.|.+|
T Consensus 183 tR~~~~~v~elnhg~pVe~vl~lps 207 (487)
T KOG0310|consen 183 TRSLTSRVVELNHGCPVESVLALPS 207 (487)
T ss_pred eccCCceeEEecCCCceeeEEEcCC
Confidence 998874444443 333333444443
No 60
>PF13964 Kelch_6: Kelch motif
Probab=76.39 E-value=1.9 Score=27.25 Aligned_cols=20 Identities=5% Similarity=0.228 Sum_probs=17.5
Q ss_pred CeeEEEecccccccccCCCcc
Q 037087 124 THINLWNVSMDEYRVVPRYKV 144 (370)
Q Consensus 124 ~~~~V~NP~T~~~~~lP~~~~ 144 (370)
.+ .+.||.|++|..+|+++.
T Consensus 29 ~v-~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 29 DV-ERYDPETNTWEQLPPMPT 48 (50)
T ss_pred cE-EEEcCCCCcEEECCCCCC
Confidence 55 999999999999998764
No 61
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=76.36 E-value=41 Score=31.31 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=36.2
Q ss_pred cEEEEEcCCCceecCCCCCCCccccccCCcceEEccEEEEEEeCCCC-ccEEEEEECCCcce
Q 037087 190 PAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDY-YKEILKFSMTDEVF 250 (370)
Q Consensus 190 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~il~fD~~~~~~ 250 (370)
....|+-++..|+..++-.+|+ ..++.++...=-|+...... ...|-+.|+.+..-
T Consensus 200 GTysfDt~~~~W~~~GdW~LPF-----~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~~~~ 256 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDWMLPF-----HGQAEYVPELDLWFGLSSDGGGGHLCACDVSSADS 256 (342)
T ss_pred EEEEEEcCCcceeeccceecCc-----CCccEECCCcCeEEEeccCCCCcEEEEEecccccc
Confidence 3556666678999976656665 23366665555677655432 24889999987543
No 62
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=75.04 E-value=8.4 Score=23.63 Aligned_cols=36 Identities=6% Similarity=0.055 Sum_probs=29.7
Q ss_pred cceEEccEEEEEEeCCC---CccEEEEEECCCcceeEeC
Q 037087 219 DDVYLNGFCYWVVHRPD---YYKEILKFSMTDEVFQVIQ 254 (370)
Q Consensus 219 ~~v~~~G~lywl~~~~~---~~~~il~fD~~~~~~~~i~ 254 (370)
.++.++|.+|-+..... ....+..||+.+.+|..++
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 37899999999987653 2468999999999998874
No 63
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=73.87 E-value=65 Score=28.66 Aligned_cols=138 Identities=12% Similarity=0.112 Sum_probs=76.8
Q ss_pred CCCcEEEEEcCCCceecCCCCCCCccccccCCcceEEccEEEEEEeCCCCccEEEEEECCCc-ceeEeCCCCCCCccccc
Q 037087 187 EFSPAAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDE-VFQVIQGPNIPQLLNYY 265 (370)
Q Consensus 187 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~~-~~~~i~~P~~~~~~~~~ 265 (370)
+...+..|++.|++=.... .+|.. .++..-..+++.+|-|+.... ..+.||..+- ....++.|. +
T Consensus 66 G~S~l~~~d~~tg~~~~~~--~l~~~--~FgEGit~~~d~l~qLTWk~~---~~f~yd~~tl~~~~~~~y~~--E----- 131 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSV--PLPPR--YFGEGITILGDKLYQLTWKEG---TGFVYDPNTLKKIGTFPYPG--E----- 131 (264)
T ss_dssp TEEEEEEEETTTSSEEEEE--E-TTT----EEEEEEETTEEEEEESSSS---EEEEEETTTTEEEEEEE-SS--S-----
T ss_pred CcEEEEEEECCCCcEEEEE--ECCcc--ccceeEEEECCEEEEEEecCC---eEEEEccccceEEEEEecCC--c-----
Confidence 4678889999988643321 34432 444456778999999999985 8999999863 334444442 1
Q ss_pred cccCCCceEEEECCeEEEEEecCCCceEEEEEecCCceeEEEEecCCcceeeeeEEe-----eCCeEEEE-eCCCeEEEE
Q 037087 266 ESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFW-----RKGEFLLQ-SSDKRLVLY 339 (370)
Q Consensus 266 ~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~-----~~~~ll~~-~~~~~~~~y 339 (370)
-|.|+..+..|.+... ...+ +.++-.....+.+|.... -..|+..- -+|.|+-. -....++..
T Consensus 132 -----GWGLt~dg~~Li~SDG---S~~L--~~~dP~~f~~~~~i~V~~-~g~pv~~LNELE~i~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 132 -----GWGLTSDGKRLIMSDG---SSRL--YFLDPETFKEVRTIQVTD-NGRPVSNLNELEYINGKIYANVWQTDRIVRI 200 (264)
T ss_dssp -------EEEECSSCEEEE-S---SSEE--EEE-TTT-SEEEEEE-EE-TTEE---EEEEEEETTEEEEEETTSSEEEEE
T ss_pred -----ceEEEcCCCEEEEECC---ccce--EEECCcccceEEEEEEEE-CCEECCCcEeEEEEcCEEEEEeCCCCeEEEE
Confidence 2337755555555443 2343 555544444555554211 12222211 27777754 346689999
Q ss_pred ECCCCcEEEE
Q 037087 340 DSTYEEMRDL 349 (370)
Q Consensus 340 d~~~~~~~~v 349 (370)
|++|++++.+
T Consensus 201 dp~tG~V~~~ 210 (264)
T PF05096_consen 201 DPETGKVVGW 210 (264)
T ss_dssp ETTT-BEEEE
T ss_pred eCCCCeEEEE
Confidence 9999998754
No 64
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=73.56 E-value=8.7 Score=22.64 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=20.8
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEE
Q 037087 325 GEFLLQSSDKRLVLYDSTYEEMRDLG 350 (370)
Q Consensus 325 ~~ll~~~~~~~~~~yd~~~~~~~~v~ 350 (370)
|.+++...++.++.+|.+|++..+-.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEee
Confidence 35677777889999999999887544
No 65
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=73.42 E-value=72 Score=29.18 Aligned_cols=105 Identities=13% Similarity=-0.049 Sum_probs=61.2
Q ss_pred cEEEEEEeCCCCccEEEEEECCCcceeEeCCCCCCCccccccccCCCceEEEECCeEEEEEecCCCceEEEEEecC-Cce
Q 037087 225 GFCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKG-RSW 303 (370)
Q Consensus 225 G~lywl~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~-~~W 303 (370)
+.+||..-.+. .|..+|..+.+.+.+..|.... ... +..-+|.|..+.. .+.++..+. ..|
T Consensus 37 ~~L~w~DI~~~---~i~r~~~~~g~~~~~~~p~~~~-------~~~---~~d~~g~Lv~~~~-----g~~~~~~~~~~~~ 98 (307)
T COG3386 37 GALLWVDILGG---RIHRLDPETGKKRVFPSPGGFS-------SGA---LIDAGGRLIACEH-----GVRLLDPDTGGKI 98 (307)
T ss_pred CEEEEEeCCCC---eEEEecCCcCceEEEECCCCcc-------cce---eecCCCeEEEEcc-----ccEEEeccCCcee
Confidence 56899877764 8999999999999999888543 112 3344455544443 233344443 555
Q ss_pred eEEEEecCCcceee--eeEEeeCCeEEEEeCC------------CeEEEEECCCCcEE
Q 037087 304 TKQFTFGPFIETYQ--PLTFWRKGEFLLQSSD------------KRLVLYDSTYEEMR 347 (370)
Q Consensus 304 ~~~~~i~~~~~~~~--~~~~~~~~~ll~~~~~------------~~~~~yd~~~~~~~ 347 (370)
.....+.......+ -..+..+|.++|..-. +.|+.+|+..+..+
T Consensus 99 t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~ 156 (307)
T COG3386 99 TLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR 156 (307)
T ss_pred EEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEE
Confidence 55444432111122 2445567888886322 35999998543333
No 66
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=73.36 E-value=19 Score=33.94 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=40.2
Q ss_pred EEEEEEeCCCCccEEEEEECCCcceeEeCCCCCCCccccccccCCCceEEEECCeEEEEEec-CCC---ceEEEEEec
Q 037087 226 FCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSE-EMA---HSFDLWIMK 299 (370)
Q Consensus 226 ~lywl~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~-~~~---~~l~IW~l~ 299 (370)
.+|-......+.+.+++||+-. +.+..|..++ . . -.--+|+|+++... .+. .-+.||+--
T Consensus 321 vLYvF~~~~~g~~~Ll~YN~I~---k~v~tPi~ch--G------~---alf~DG~l~~fra~~~EptrvHp~QiWqTP 384 (448)
T PF12458_consen 321 VLYVFYAREEGRYLLLPYNLIR---KEVATPIICH--G------Y---ALFEDGRLVYFRAEGDEPTRVHPMQIWQTP 384 (448)
T ss_pred EEEEEEECCCCcEEEEechhhh---hhhcCCeecc--c------e---eEecCCEEEEEecCCCCcceeccceeecCC
Confidence 6777777777778999999876 3456777655 1 1 23558999998875 222 246777654
No 67
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=72.92 E-value=56 Score=28.74 Aligned_cols=146 Identities=18% Similarity=0.199 Sum_probs=72.7
Q ss_pred EEEEEcCCCceecCCCCCCCccccccCCcceEEccEEEEEEeCCCCccEEEEEECCC----cceeEeCCCCCCCcccccc
Q 037087 191 AAVYNFTTNCWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDYYKEILKFSMTD----EVFQVIQGPNIPQLLNYYE 266 (370)
Q Consensus 191 ~~vyss~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~----~~~~~i~~P~~~~~~~~~~ 266 (370)
..+|+..+++++......-. ++....+.-||.+.-......+...+-.|+..+ ..|.. .+.... .
T Consensus 48 s~~yD~~tn~~rpl~v~td~----FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e--~~~~m~-----~ 116 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDT----FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTE--SPNDMQ-----S 116 (243)
T ss_pred EEEEecCCCcEEeccCCCCC----cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceE--Cccccc-----C
Confidence 45677777777763211111 222235666776664443333344566777654 23333 222111 0
Q ss_pred ccCCCceEEEECCeEEEEEecCCCceEEEEEecC---C--ceeEEEEec-CCc-ceeeeeEEeeCCeEEEEeCCCeEEEE
Q 037087 267 SAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKG---R--SWTKQFTFG-PFI-ETYQPLTFWRKGEFLLQSSDKRLVLY 339 (370)
Q Consensus 267 ~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~---~--~W~~~~~i~-~~~-~~~~~~~~~~~~~ll~~~~~~~~~~y 339 (370)
.+..+....--+|++.++... .....+.|=-+. . .|....... ... ..+.-+.+-.+|+||+.... +-.+|
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~-~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-~s~i~ 194 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGS-NNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-GSIIY 194 (243)
T ss_pred CCccccceECCCCCEEEEeCc-CCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-CcEEE
Confidence 122222244557888888874 344555554432 1 121111110 111 23444566679998877544 46778
Q ss_pred ECCCCcE-EEE
Q 037087 340 DSTYEEM-RDL 349 (370)
Q Consensus 340 d~~~~~~-~~v 349 (370)
|.+++++ +++
T Consensus 195 d~~~n~v~~~l 205 (243)
T PF07250_consen 195 DYKTNTVVRTL 205 (243)
T ss_pred eCCCCeEEeeC
Confidence 9999976 444
No 68
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=71.68 E-value=13 Score=23.07 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=12.5
Q ss_pred CeEEEEECCCCcEEEE
Q 037087 334 KRLVLYDSTYEEMRDL 349 (370)
Q Consensus 334 ~~~~~yd~~~~~~~~v 349 (370)
..++.||+++++|+++
T Consensus 29 ~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 29 NDLWIFDIETNTWTRL 44 (49)
T ss_dssp --EEEEETTTTEEEE-
T ss_pred CCEEEEECCCCEEEEC
Confidence 3689999999999988
No 69
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=71.20 E-value=95 Score=29.39 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=43.5
Q ss_pred EEECCeEEEEEecCCCceEEEEEecCCceeEEEEe-cCCcc--eeeeeEEeeCCeEEEE-eCCCeEEEEECCCCcEEEE
Q 037087 275 GIYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTF-GPFIE--TYQPLTFWRKGEFLLQ-SSDKRLVLYDSTYEEMRDL 349 (370)
Q Consensus 275 ~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i-~~~~~--~~~~~~~~~~~~ll~~-~~~~~~~~yd~~~~~~~~v 349 (370)
..-+|+++++.. ...++.+|-++| |..+.+. +.... +-+.+..+.+..++.. .+++++++||.+++.+-.+
T Consensus 403 iS~d~k~~LvnL--~~qei~LWDl~e--~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 403 ISKDGKLALVNL--QDQEIHLWDLEE--NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV 477 (519)
T ss_pred EcCCCcEEEEEc--ccCeeEEeecch--hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe
Confidence 355789999998 778999999996 3332221 11111 1122222234455554 6788999999998876443
No 70
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=66.44 E-value=1.1e+02 Score=28.46 Aligned_cols=110 Identities=11% Similarity=0.085 Sum_probs=61.7
Q ss_pred ceEEccEEEEEEeCCCCccEEEEEECCCcceeEe-CCCCCCCccccccccCCCceEEEECCeEEEEEecCCCceEEEEEe
Q 037087 220 DVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVI-QGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIM 298 (370)
Q Consensus 220 ~v~~~G~lywl~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l 298 (370)
++..+|.+|.....+ .+.++|..+.+..+. +.+. ... .+..+|.+++... ...+..+-.
T Consensus 237 p~~~~~~vy~~~~~g----~l~a~d~~tG~~~W~~~~~~----------~~~---p~~~~~~vyv~~~---~G~l~~~d~ 296 (377)
T TIGR03300 237 PVVDGGQVYAVSYQG----RVAALDLRSGRVLWKRDASS----------YQG---PAVDDNRLYVTDA---DGVVVALDR 296 (377)
T ss_pred cEEECCEEEEEEcCC----EEEEEECCCCcEEEeeccCC----------ccC---ceEeCCEEEEECC---CCeEEEEEC
Confidence 667789988877665 699999987654332 2211 111 3345555555432 234444444
Q ss_pred cC--CceeEEEEecCCcceeeeeEEeeCCeEEEEeCCCeEEEEECCCCcEE-EEEEec
Q 037087 299 KG--RSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEEMR-DLGITG 353 (370)
Q Consensus 299 ~~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~~~-~v~~~~ 353 (370)
++ ..|.... +. ......|+. .++.+++...++.++.+|.+++++. ++.+.+
T Consensus 297 ~tG~~~W~~~~-~~-~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 297 RSGSELWKNDE-LK-YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred CCCcEEEcccc-cc-CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 33 3454321 11 011223333 3667888788889999999988765 444433
No 71
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=66.01 E-value=1.4e+02 Score=29.20 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=40.7
Q ss_pred CCCceEEEEEecC-CceeEEEEecCCcceeeeeEEeeCCeEEEEeCCCeEEEEECCCCcEEEEEEecceeeEEEe
Q 037087 288 EMAHSFDLWIMKG-RSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEEMRDLGITGLWFSVNIL 361 (370)
Q Consensus 288 ~~~~~l~IW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~~~~v~~~~~~~~~~~~ 361 (370)
.....+.||. +. -.|+++.. ++- .-.++...|-+.+....++.++.|.+++.+-.+.-.+.+..++.|
T Consensus 387 gqdk~v~lW~-~~k~~wt~~~~-d~~----~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~y 455 (626)
T KOG2106|consen 387 GQDKHVRLWN-DHKLEWTKIIE-DPA----ECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRY 455 (626)
T ss_pred cCcceEEEcc-CCceeEEEEec-Cce----eEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEE
Confidence 4567888898 44 78888763 221 123344455444556677778888877777666655444433333
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=65.92 E-value=30 Score=32.71 Aligned_cols=71 Identities=14% Similarity=0.278 Sum_probs=47.5
Q ss_pred CCeEEEEEecCCCceEEEEEecCCceeEEEEecCCcceeeeeEEeeCCeEEEE-eCCCeEEEEECCC-CcEEEEEEe
Q 037087 278 DDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQ-SSDKRLVLYDSTY-EEMRDLGIT 352 (370)
Q Consensus 278 ~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~yd~~~-~~~~~v~~~ 352 (370)
||-|..... ....+.||-++++. ..-+++...+-..-+.+.+||--+.. .+++.|.+||++. +.++.+.++
T Consensus 358 DgLifgtgt--~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~ 430 (506)
T KOG0289|consen 358 DGLIFGTGT--PDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD 430 (506)
T ss_pred CceEEeccC--CCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc
Confidence 344444443 77899999999843 44555555555667888889986655 5666799999975 345555554
No 73
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=64.38 E-value=1.1e+02 Score=27.53 Aligned_cols=219 Identities=15% Similarity=0.037 Sum_probs=115.1
Q ss_pred eecceEEEccCC-CeeEEEecccccccccCCCccCCCCCcccccceEEEeecCCC---C-ceEEEEEEEEee-----cCC
Q 037087 112 PYDGIFLLLGDH-THINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVA---N-DFKLVLVLTLWD-----ENR 181 (370)
Q Consensus 112 s~nGLl~~~~~~-~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~---~-~ykvv~~~~~~~-----~~~ 181 (370)
+-+|-|-+.... ..+==.||.|++....|...-.++. .+.+|-|.+. + .--|.++..... ...
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-------giv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-------GIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred CCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-------eEEECCCCCeeEecCcceeEEecCcccceEEeecc
Confidence 557878777643 2224469999999998865433221 1222211110 0 013333321000 000
Q ss_pred cCCCCCCCcEEEEEcCCCceecC--C---C----------CCCCccccccCCc-ceEEccEEEEEEeCCCCccEEEEEEC
Q 037087 182 QWTYDEFSPAAVYNFTTNCWRDL--G---G----------FPMSRHYRFEGAD-DVYLNGFCYWVVHRPDYYKEILKFSM 245 (370)
Q Consensus 182 ~~~~~~~~~~~vyss~t~~W~~~--~---~----------~~~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~il~fD~ 245 (370)
.+......+--||+-..+-|-.. . . .+.|.+ ..... ++.-||.+|+-...++ +|...|.
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG--~gpyGi~atpdGsvwyaslagn---aiaridp 217 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG--GGPYGICATPDGSVWYASLAGN---AIARIDP 217 (353)
T ss_pred cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC--CCCcceEECCCCcEEEEecccc---ceEEccc
Confidence 11233456677888888888551 1 0 011111 01111 4455899998766664 8999999
Q ss_pred CCcceeEeCCCCCCCccccccccCCCceEEEECCeEEEEEecCCCceEEEEEecCCceeEEEEecCCcceeeeeEEeeCC
Q 037087 246 TDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKG 325 (370)
Q Consensus 246 ~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~ 325 (370)
.+..-.+++.|..... . .+.. -...-|++-.-.. ....+...--...+|.... ++-...-..-+.+++.|
T Consensus 218 ~~~~aev~p~P~~~~~--g--sRri---wsdpig~~wittw--g~g~l~rfdPs~~sW~eyp-LPgs~arpys~rVD~~g 287 (353)
T COG4257 218 FAGHAEVVPQPNALKA--G--SRRI---WSDPIGRAWITTW--GTGSLHRFDPSVTSWIEYP-LPGSKARPYSMRVDRHG 287 (353)
T ss_pred ccCCcceecCCCcccc--c--cccc---ccCccCcEEEecc--CCceeeEeCcccccceeee-CCCCCCCcceeeeccCC
Confidence 9998899998886431 0 1100 0122233333322 2233322222225565533 32111123346777888
Q ss_pred eEEEE-eCCCeEEEEECCCCcEEEEEEe
Q 037087 326 EFLLQ-SSDKRLVLYDSTYEEMRDLGIT 352 (370)
Q Consensus 326 ~ll~~-~~~~~~~~yd~~~~~~~~v~~~ 352 (370)
.+++. ...+.+.-||+++.++..+-+.
T Consensus 288 rVW~sea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 288 RVWLSEADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred cEEeeccccCceeecCcccceEEEecCC
Confidence 88886 3456799999999999988663
No 74
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=63.29 E-value=1.3e+02 Score=28.05 Aligned_cols=132 Identities=11% Similarity=0.032 Sum_probs=64.0
Q ss_pred cEEEEEcCCC--ceecCCCCCCCccccccCCcceEEccEEEEEEeCCCCccEEEEEECCCcceeE-eCCCCCCCcccccc
Q 037087 190 PAAVYNFTTN--CWRDLGGFPMSRHYRFEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQV-IQGPNIPQLLNYYE 266 (370)
Q Consensus 190 ~~~vyss~t~--~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~~ 266 (370)
.+..|+..++ .|+...... . ...++..+|.+|.-...+ .+.++|..+.+..+ ..++....
T Consensus 76 ~v~a~d~~tG~~~W~~~~~~~------~-~~~p~v~~~~v~v~~~~g----~l~ald~~tG~~~W~~~~~~~~~------ 138 (377)
T TIGR03300 76 TVVALDAETGKRLWRVDLDER------L-SGGVGADGGLVFVGTEKG----EVIALDAEDGKELWRAKLSSEVL------ 138 (377)
T ss_pred eEEEEEccCCcEeeeecCCCC------c-ccceEEcCCEEEEEcCCC----EEEEEECCCCcEeeeeccCceee------
Confidence 4556665555 487632111 1 112455677787654444 79999997654433 33332111
Q ss_pred ccCCCceEEEECCeEEEEEecCCCceEEEEEecC--CceeEEEEecCC--cceeeeeEEeeCCeEEEEeCCCeEEEEECC
Q 037087 267 SAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKG--RSWTKQFTFGPF--IETYQPLTFWRKGEFLLQSSDKRLVLYDST 342 (370)
Q Consensus 267 ~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i~~~--~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~ 342 (370)
.. ....++.+.+.. ....+..|-.++ ..|......... .....|+. .++.+++...+++++.+|++
T Consensus 139 --~~---p~v~~~~v~v~~---~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~ 208 (377)
T TIGR03300 139 --SP---PLVANGLVVVRT---NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQ 208 (377)
T ss_pred --cC---CEEECCEEEEEC---CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEcc
Confidence 01 122344443322 223343444333 335433221110 00123333 24566666677899999999
Q ss_pred CCcEEE
Q 037087 343 YEEMRD 348 (370)
Q Consensus 343 ~~~~~~ 348 (370)
+++..+
T Consensus 209 tG~~~W 214 (377)
T TIGR03300 209 TGQPLW 214 (377)
T ss_pred CCCEee
Confidence 887543
No 75
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=62.85 E-value=1.6e+02 Score=29.24 Aligned_cols=116 Identities=14% Similarity=0.120 Sum_probs=58.7
Q ss_pred cceEEccEEEEEEeCCCCccEEEEEECCCcce--eEe-CCCCCCCcc-ccccccCCCceEEEECCeEEEEEecCCCceEE
Q 037087 219 DDVYLNGFCYWVVHRPDYYKEILKFSMTDEVF--QVI-QGPNIPQLL-NYYESAMRPWMLGIYDDYLSILYSEEMAHSFD 294 (370)
Q Consensus 219 ~~v~~~G~lywl~~~~~~~~~il~fD~~~~~~--~~i-~~P~~~~~~-~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~ 294 (370)
+++..+|.+|...... .|.++|..+.+. +.- ..|...... ........ +...+|++.+...+ . .
T Consensus 64 tPvv~~g~vyv~s~~g----~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg---~av~~~~v~v~t~d---g--~ 131 (527)
T TIGR03075 64 QPLVVDGVMYVTTSYS----RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRG---VALYDGKVFFGTLD---A--R 131 (527)
T ss_pred CCEEECCEEEEECCCC----cEEEEECCCCceeeEecCCCCccccccccccccccc---ceEECCEEEEEcCC---C--E
Confidence 3788899999876654 699999987543 322 223211100 00000111 34556666554431 1 2
Q ss_pred EEEecC----CceeEEEEecCC---cceeeeeEEeeCCeEEEEeC------CCeEEEEECCCCcEEEE
Q 037087 295 LWIMKG----RSWTKQFTFGPF---IETYQPLTFWRKGEFLLQSS------DKRLVLYDSTYEEMRDL 349 (370)
Q Consensus 295 IW~l~~----~~W~~~~~i~~~---~~~~~~~~~~~~~~ll~~~~------~~~~~~yd~~~~~~~~v 349 (370)
|..|+- ..|..... ++. .....|+.. ++.|++... ++.++.||.+|++..+-
T Consensus 132 l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred EEEEECCCCCEEeecccc-cccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 334433 44544321 111 111234432 556666432 46899999999876544
No 76
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=60.57 E-value=1.5e+02 Score=31.01 Aligned_cols=28 Identities=4% Similarity=0.074 Sum_probs=22.6
Q ss_pred cceEEccEEEEEEeCCCCccEEEEEECCCcce
Q 037087 219 DDVYLNGFCYWVVHRPDYYKEILKFSMTDEVF 250 (370)
Q Consensus 219 ~~v~~~G~lywl~~~~~~~~~il~fD~~~~~~ 250 (370)
+++.++|++|..+... .|.++|..+.+-
T Consensus 189 TPlvvgg~lYv~t~~~----~V~ALDa~TGk~ 216 (764)
T TIGR03074 189 TPLKVGDTLYLCTPHN----KVIALDAATGKE 216 (764)
T ss_pred CCEEECCEEEEECCCC----eEEEEECCCCcE
Confidence 4899999999987655 699999987543
No 77
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=59.74 E-value=1.8e+02 Score=28.53 Aligned_cols=202 Identities=13% Similarity=0.160 Sum_probs=95.3
Q ss_pred CeeEEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCCcEEEEEcCCC--ce
Q 037087 124 THINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTN--CW 201 (370)
Q Consensus 124 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~t~--~W 201 (370)
++ .|.|-+|++|. +|.-.-+. ..-..++||.+|. -+++++..+ .+. +.++=+.|.+... .|
T Consensus 58 EL-HvYNTatnqWf-~PavrGDi----PpgcAA~GfvcdG----trilvFGGM-vEY------GkYsNdLYELQasRWeW 120 (830)
T KOG4152|consen 58 EL-HVYNTATNQWF-APAVRGDI----PPGCAAFGFVCDG----TRILVFGGM-VEY------GKYSNDLYELQASRWEW 120 (830)
T ss_pred hh-hhhccccceee-cchhcCCC----CCchhhcceEecC----ceEEEEccE-eee------ccccchHHHhhhhhhhH
Confidence 67 99999999997 44322111 1124456666553 456666442 111 2455556666654 56
Q ss_pred ec-CCCC----CCCccccccCCcceEEccEEEEEEeCCC-------------CccEEEEEECCCcceeE-eC-----CCC
Q 037087 202 RD-LGGF----PMSRHYRFEGADDVYLNGFCYWVVHRPD-------------YYKEILKFSMTDEVFQV-IQ-----GPN 257 (370)
Q Consensus 202 ~~-~~~~----~~~~~~~~~~~~~v~~~G~lywl~~~~~-------------~~~~il~fD~~~~~~~~-i~-----~P~ 257 (370)
+. ...+ +.|. .-.+++-+..+.++|....-.+ +..+|+-+-..+...-+ ++ +|.
T Consensus 121 krlkp~~p~nG~pPC--PRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~ 198 (830)
T KOG4152|consen 121 KRLKPKTPKNGPPPC--PRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPP 198 (830)
T ss_pred hhcCCCCCCCCCCCC--CccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCC
Confidence 65 1111 1111 0112334556678888754321 13466655555543322 22 343
Q ss_pred CCCccccccccCCCceEEEECC-e--EEEEEecCCCceEEEEEecC--CceeEEEE--ecCCcc-------eeeeeEEee
Q 037087 258 IPQLLNYYESAMRPWMLGIYDD-Y--LSILYSEEMAHSFDLWIMKG--RSWTKQFT--FGPFIE-------TYQPLTFWR 323 (370)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~g-~--L~~~~~~~~~~~l~IW~l~~--~~W~~~~~--i~~~~~-------~~~~~~~~~ 323 (370)
..+ .... =-.++.|. + +.+...-...+-=++|.|+= -+|.+-.- +.|++. +..-+++..
T Consensus 199 pRE------SHTA-ViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfG 271 (830)
T KOG4152|consen 199 PRE------SHTA-VIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFG 271 (830)
T ss_pred Ccc------ccee-EEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceeecceeEEec
Confidence 222 1111 00123333 2 33333222333446899996 78988442 333331 111111111
Q ss_pred ------CCeEEEEe------CCCeEEEEECCCCcEEEEEE
Q 037087 324 ------KGEFLLQS------SDKRLVLYDSTYEEMRDLGI 351 (370)
Q Consensus 324 ------~~~ll~~~------~~~~~~~yd~~~~~~~~v~~ 351 (370)
.++.=... ....+-++|+++.+|+.+..
T Consensus 272 GWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~ 311 (830)
T KOG4152|consen 272 GWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLM 311 (830)
T ss_pred ceeeeeccccccccccceeeeccceeeeeecchheeeeee
Confidence 00110110 12358899999999998865
No 78
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=58.85 E-value=17 Score=21.50 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=16.3
Q ss_pred eCCeEEEEeCCCeEEEEECCC
Q 037087 323 RKGEFLLQSSDKRLVLYDSTY 343 (370)
Q Consensus 323 ~~~~ll~~~~~~~~~~yd~~~ 343 (370)
.++.+++...+++++.+|.+|
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 367888888899999999875
No 79
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=58.66 E-value=1.5e+02 Score=27.08 Aligned_cols=120 Identities=10% Similarity=0.079 Sum_probs=63.6
Q ss_pred ceEEccEEEEEEeCCCCccEEEEEECC--CcceeEe---C-CCCCCCccccccccCCCceE-EEECCe-EEEEEecCCCc
Q 037087 220 DVYLNGFCYWVVHRPDYYKEILKFSMT--DEVFQVI---Q-GPNIPQLLNYYESAMRPWML-GIYDDY-LSILYSEEMAH 291 (370)
Q Consensus 220 ~v~~~G~lywl~~~~~~~~~il~fD~~--~~~~~~i---~-~P~~~~~~~~~~~~~~~~~l-~~~~g~-L~~~~~~~~~~ 291 (370)
.+.-+|...+.+.... ..|.+||+. ++++..+ . .|.... . ...... + ..-+|+ |++.. ...+
T Consensus 181 ~~~pdg~~lyv~~~~~--~~v~v~~~~~~~~~~~~~~~~~~~p~~~~--~-~~~~~~---i~~~pdg~~lyv~~--~~~~ 250 (330)
T PRK11028 181 VFHPNQQYAYCVNELN--SSVDVWQLKDPHGEIECVQTLDMMPADFS--D-TRWAAD---IHITPDGRHLYACD--RTAS 250 (330)
T ss_pred EECCCCCEEEEEecCC--CEEEEEEEeCCCCCEEEEEEEecCCCcCC--C-Ccccee---EEECCCCCEEEEec--CCCC
Confidence 3344666666665532 367777765 3444333 2 243211 0 000001 1 223555 44443 3668
Q ss_pred eEEEEEecC--CceeEEEEecCCcceeeeeEEeeCCeEEEE--eCCCeEEEEEC--CCCcEEEEE
Q 037087 292 SFDLWIMKG--RSWTKQFTFGPFIETYQPLTFWRKGEFLLQ--SSDKRLVLYDS--TYEEMRDLG 350 (370)
Q Consensus 292 ~l~IW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~yd~--~~~~~~~v~ 350 (370)
.+.+|.++. ..+.....+.... ..+.+.+..+|+.++. ..++.+.+|++ +++.++.++
T Consensus 251 ~I~v~~i~~~~~~~~~~~~~~~~~-~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 251 LISVFSVSEDGSVLSFEGHQPTET-QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred eEEEEEEeCCCCeEEEeEEEeccc-cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 999999976 5566666654321 2234566677776554 33566777754 567777765
No 80
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=58.49 E-value=54 Score=29.60 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=40.8
Q ss_pred CCceEEEEEecC-CceeEEEEecCCcceeeeeE-Ee-eCCe-EEEEeCCCeEEEEECCCCcEEEEEEeccee
Q 037087 289 MAHSFDLWIMKG-RSWTKQFTFGPFIETYQPLT-FW-RKGE-FLLQSSDKRLVLYDSTYEEMRDLGITGLWF 356 (370)
Q Consensus 289 ~~~~l~IW~l~~-~~W~~~~~i~~~~~~~~~~~-~~-~~~~-ll~~~~~~~~~~yd~~~~~~~~v~~~~~~~ 356 (370)
=.++++||.+++ +.=.-+...... ..++. .| ++|. ++....++++-.||+.+++...|..+...-
T Consensus 48 WD~tVR~wevq~~g~~~~ka~~~~~---~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pv 116 (347)
T KOG0647|consen 48 WDGTVRIWEVQNSGQLVPKAQQSHD---GPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPV 116 (347)
T ss_pred cCCceEEEEEecCCcccchhhhccC---CCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccce
Confidence 347899999998 322222211111 11222 23 3444 555677899999999999999999876543
No 81
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=57.01 E-value=1.5e+02 Score=26.90 Aligned_cols=69 Identities=9% Similarity=0.083 Sum_probs=39.2
Q ss_pred CCe-EEEEEecCCCceEEEEEecC-CceeE----EEEecCCcceeeeeEEeeCCeEEEE--eCCCeEEEEECC--CCcEE
Q 037087 278 DDY-LSILYSEEMAHSFDLWIMKG-RSWTK----QFTFGPFIETYQPLTFWRKGEFLLQ--SSDKRLVLYDST--YEEMR 347 (370)
Q Consensus 278 ~g~-L~~~~~~~~~~~l~IW~l~~-~~W~~----~~~i~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~yd~~--~~~~~ 347 (370)
+|+ |++... ....+.||-++. +.-.. ...+.... -.+-+.+..+|..++. ..++.+.+||++ +++++
T Consensus 136 ~g~~l~v~~~--~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~-~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 136 DNRTLWVPCL--KEDRIRLFTLSDDGHLVAQEPAEVTTVEGA-GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE 212 (330)
T ss_pred CCCEEEEeeC--CCCEEEEEEECCCCcccccCCCceecCCCC-CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence 555 444554 668899999976 33221 11222111 1234566777776544 336789999987 45665
Q ss_pred EE
Q 037087 348 DL 349 (370)
Q Consensus 348 ~v 349 (370)
.+
T Consensus 213 ~~ 214 (330)
T PRK11028 213 CV 214 (330)
T ss_pred EE
Confidence 44
No 82
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=56.92 E-value=1.6e+02 Score=27.16 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=53.0
Q ss_pred EEECCeEEEEEecCCCceEEEEEecC--CceeEEEEecCCcc------eeeeeEEeeCCeEEEEeCCC----eEEEEECC
Q 037087 275 GIYDDYLSILYSEEMAHSFDLWIMKG--RSWTKQFTFGPFIE------TYQPLTFWRKGEFLLQSSDK----RLVLYDST 342 (370)
Q Consensus 275 ~~~~g~L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i~~~~~------~~~~~~~~~~~~ll~~~~~~----~~~~yd~~ 342 (370)
.--+|+++.+.. +-..++.+|..+. ++-..+-+|+..+. -...+.+..+|.+|.....+ .+|..|..
T Consensus 198 FHpn~k~aY~v~-EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 198 FHPNGKYAYLVN-ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EcCCCcEEEEEe-ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 345788877776 4778999999998 77777777764431 13456677788887764322 36666777
Q ss_pred CCcEEEEEEe
Q 037087 343 YEEMRDLGIT 352 (370)
Q Consensus 343 ~~~~~~v~~~ 352 (370)
+++++-++..
T Consensus 277 ~g~L~~~~~~ 286 (346)
T COG2706 277 GGKLELVGIT 286 (346)
T ss_pred CCEEEEEEEe
Confidence 7888777653
No 83
>PF13013 F-box-like_2: F-box-like domain
Probab=56.87 E-value=4 Score=30.90 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=24.9
Q ss_pred CCCCCcHHHHHHHhccCCccccceeeeccc
Q 037087 10 GYGDLSDDVMVETLSRLPVKSLMRFRCVCK 39 (370)
Q Consensus 10 ~~~~LP~Dll~eIL~rLp~~sl~r~~~VcK 39 (370)
...+||+||+..|+..-....+...-..|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 377899999999999999888866666665
No 84
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=55.72 E-value=61 Score=28.94 Aligned_cols=71 Identities=14% Similarity=0.216 Sum_probs=48.4
Q ss_pred EEECCeEEEEEecCCCceEEEEEecC-CceeEEEEecCCcceeeeeEEeeCCeEEEEeCCCeEEEEECCCCc-EEEEEE
Q 037087 275 GIYDDYLSILYSEEMAHSFDLWIMKG-RSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEE-MRDLGI 351 (370)
Q Consensus 275 ~~~~g~L~~~~~~~~~~~l~IW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~-~~~v~~ 351 (370)
+.-||.||.... ....+.+|-|.+ .. .+.++-.. ....+++..+.-.+.......+-+||++++. ++++..
T Consensus 200 vSpDGslcasGg--kdg~~~LwdL~~~k~---lysl~a~~-~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 200 VSPDGSLCASGG--KDGEAMLWDLNEGKN---LYSLEAFD-IVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred ECCCCCEEecCC--CCceEEEEEccCCce---eEeccCCC-eEeeEEecCCceeEeeccCCceEEEeccchhhhhhccc
Confidence 455899998876 778999999998 32 45554332 4555666666555555566679999999876 444443
No 85
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=55.68 E-value=24 Score=25.63 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.1
Q ss_pred CCeEEEEECCCCcEEEE
Q 037087 333 DKRLVLYDSTYEEMRDL 349 (370)
Q Consensus 333 ~~~~~~yd~~~~~~~~v 349 (370)
.++++.||++|++.+.+
T Consensus 36 ~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVL 52 (89)
T ss_dssp -EEEEEEETTTTEEEEE
T ss_pred CcCEEEEECCCCeEEEe
Confidence 46899999999998766
No 86
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=55.43 E-value=1.5e+02 Score=30.41 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=25.2
Q ss_pred eeEEeeCCeEEEE--eCCCeEEEEECCCCcEEEE
Q 037087 318 PLTFWRKGEFLLQ--SSDKRLVLYDSTYEEMRDL 349 (370)
Q Consensus 318 ~~~~~~~~~ll~~--~~~~~~~~yd~~~~~~~~v 349 (370)
-++++..|+|++. .+...+++|+.+|+++..|
T Consensus 440 cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI 473 (893)
T ss_pred EEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence 3566667999887 4456899999999998776
No 87
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=55.23 E-value=1.8e+02 Score=27.18 Aligned_cols=121 Identities=12% Similarity=0.142 Sum_probs=69.1
Q ss_pred EEccEEEEEEeCCCCccEEEEEECCCcceeE---eCCCCCCCccccccccCCCceEE---EECCeEEEEEecC-----CC
Q 037087 222 YLNGFCYWVVHRPDYYKEILKFSMTDEVFQV---IQGPNIPQLLNYYESAMRPWMLG---IYDDYLSILYSEE-----MA 290 (370)
Q Consensus 222 ~~~G~lywl~~~~~~~~~il~fD~~~~~~~~---i~~P~~~~~~~~~~~~~~~~~l~---~~~g~L~~~~~~~-----~~ 290 (370)
-.+|..+|.+..+ .|..+|+++..-.. +.+..... ..++-...-|+.+ --+++|+++..-. ..
T Consensus 203 ~~dg~~~~vs~eG----~V~~id~~~~~~~~~~~~~~~~~~~--~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~ 276 (352)
T TIGR02658 203 NKSGRLVWPTYTG----KIFQIDLSSGDAKFLPAIEAFTEAE--KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT 276 (352)
T ss_pred cCCCcEEEEecCC----eEEEEecCCCcceecceeeeccccc--cccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence 3379999999885 68999976543211 11111000 0000011111122 2235577644210 12
Q ss_pred ceEEEEEecCCceeEEEEecCCcceeeeeEEeeCCe-EEEEe--CCCeEEEEECCCCc-EEEE
Q 037087 291 HSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGE-FLLQS--SDKRLVLYDSTYEE-MRDL 349 (370)
Q Consensus 291 ~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-ll~~~--~~~~~~~yd~~~~~-~~~v 349 (370)
..=+||+++-.++..+.+|.... -...+++..+++ .++.. .++.+.++|..+++ ++.|
T Consensus 277 ~~~~V~ViD~~t~kvi~~i~vG~-~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 277 ASRFLFVVDAKTGKRLRKIELGH-EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCEEEEEECCCCeEEEEEeCCC-ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 22478999988888888887543 345677888888 66653 35679999999874 5666
No 88
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=54.08 E-value=1.5e+02 Score=25.89 Aligned_cols=122 Identities=11% Similarity=0.021 Sum_probs=62.8
Q ss_pred EccEEEEEEeCCCCccEEEEEECCCcce-eEeCCCC-CCCccccccccCCCceEE-EECCeEEEEEecCCCceEEEEEec
Q 037087 223 LNGFCYWVVHRPDYYKEILKFSMTDEVF-QVIQGPN-IPQLLNYYESAMRPWMLG-IYDDYLSILYSEEMAHSFDLWIMK 299 (370)
Q Consensus 223 ~~G~lywl~~~~~~~~~il~fD~~~~~~-~~i~~P~-~~~~~~~~~~~~~~~~l~-~~~g~L~~~~~~~~~~~l~IW~l~ 299 (370)
-+|...++..... ..|..+|+.+.+. ..+.... ... ........ +. .-+|+..++.. ....++.||-++
T Consensus 166 ~dg~~l~~~~~~~--~~v~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~---i~~s~dg~~~~~~~-~~~~~i~v~d~~ 237 (300)
T TIGR03866 166 ADGKELWVSSEIG--GTVSVIDVATRKVIKKITFEIPGVH--PEAVQPVG---IKLTKDGKTAFVAL-GPANRVAVVDAK 237 (300)
T ss_pred CCCCEEEEEcCCC--CEEEEEEcCcceeeeeeeecccccc--cccCCccc---eEECCCCCEEEEEc-CCCCeEEEEECC
Confidence 3565444443221 2688899987643 3332211 000 00000111 22 34566544433 234578888765
Q ss_pred CCceeEEEEecCCcceeeeeEEeeCCeEEEE--eCCCeEEEEECCCCc-EEEEEEecce
Q 037087 300 GRSWTKQFTFGPFIETYQPLTFWRKGEFLLQ--SSDKRLVLYDSTYEE-MRDLGITGLW 355 (370)
Q Consensus 300 ~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~yd~~~~~-~~~v~~~~~~ 355 (370)
. |.....+.... ....+.+..+|+.++. ..++.+.+||+++++ ++++.+.+.+
T Consensus 238 ~--~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 293 (300)
T TIGR03866 238 T--YEVLDYLLVGQ-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLP 293 (300)
T ss_pred C--CcEEEEEEeCC-CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccc
Confidence 3 44443332111 2334556667776554 347889999999988 4777765443
No 89
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=53.65 E-value=1.6e+02 Score=25.95 Aligned_cols=125 Identities=18% Similarity=0.269 Sum_probs=70.4
Q ss_pred CCcceEEccEEEEEEeCCCCccEEEEEECCCc-ceeEeCCCCCCCccc-----cccccCCCceEEEECCeEEEEEe-cCC
Q 037087 217 GADDVYLNGFCYWVVHRPDYYKEILKFSMTDE-VFQVIQGPNIPQLLN-----YYESAMRPWMLGIYDDYLSILYS-EEM 289 (370)
Q Consensus 217 ~~~~v~~~G~lywl~~~~~~~~~il~fD~~~~-~~~~i~~P~~~~~~~-----~~~~~~~~~~l~~~~g~L~~~~~-~~~ 289 (370)
+...|..+|.+|+..... ..|+.||+.++ ......+|....... .+...+. +++.+.-|-++.. ...
T Consensus 70 gTg~VVynGs~yynk~~t---~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD---~avDE~GLWviYat~~~ 143 (249)
T KOG3545|consen 70 GTGHVVYNGSLYYNKAGT---RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDID---LAVDENGLWVIYATPEN 143 (249)
T ss_pred ccceEEEcceEEeeccCC---cceEEEEeecceeeeeeeccccccCCCcccccCCCcccc---ceecccceeEEeccccc
Confidence 344899999999987655 37999999985 344556666432100 1112344 6666666655543 355
Q ss_pred CceEEEEEecC------CceeEEEEecCCcceeeeeEEeeCCeEEEE----eCCCeE-EEEECCCCcEEEEEEe
Q 037087 290 AHSFDLWIMKG------RSWTKQFTFGPFIETYQPLTFWRKGEFLLQ----SSDKRL-VLYDSTYEEMRDLGIT 352 (370)
Q Consensus 290 ~~~l~IW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~----~~~~~~-~~yd~~~~~~~~v~~~ 352 (370)
...+.|=.|+. ..|.-...- ..... ++.-.|.+... ..+..+ +.||..+++-+.+.+.
T Consensus 144 ~g~iv~skLdp~tl~~e~tW~T~~~k---~~~~~--aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 144 AGTIVLSKLDPETLEVERTWNTTLPK---RSAGN--AFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLP 212 (249)
T ss_pred CCcEEeeccCHHHhheeeeeccccCC---CCcCc--eEEEeeeeEEEeccccCCceEEEEEEcCCCceeccccc
Confidence 56666677776 445332211 10100 11113344443 123334 6899998888877753
No 90
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=53.44 E-value=10 Score=34.65 Aligned_cols=39 Identities=18% Similarity=0.450 Sum_probs=32.3
Q ss_pred cCCCCCcHHHHHHHhccCCc--------cccceeeecccchhhhcCC
Q 037087 9 TGYGDLSDDVMVETLSRLPV--------KSLMRFRCVCKSWYCLVKD 47 (370)
Q Consensus 9 ~~~~~LP~Dll~eIL~rLp~--------~sl~r~~~VcK~W~~li~~ 47 (370)
...+.||.+++.+|+.|... ++++.++.|||.|+....+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 45668999999999999872 2688999999999997654
No 91
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=53.41 E-value=7.9 Score=34.12 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=32.0
Q ss_pred ccCCCCCcHHHHHHHhccCC-ccccceeeecccchhhhcCCh
Q 037087 8 TTGYGDLSDDVMVETLSRLP-VKSLMRFRCVCKSWYCLVKDP 48 (370)
Q Consensus 8 ~~~~~~LP~Dll~eIL~rLp-~~sl~r~~~VcK~W~~li~~p 48 (370)
.-...+||.+++.+||.||| -++|..++.|-..-..++++.
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~ 240 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEER 240 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHH
Confidence 34577999999999999999 779988888765555555543
No 92
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=51.38 E-value=34 Score=25.77 Aligned_cols=37 Identities=11% Similarity=0.008 Sum_probs=27.5
Q ss_pred EEEecccc-cccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEE
Q 037087 127 NLWNVSMD-EYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVL 174 (370)
Q Consensus 127 ~V~NP~T~-~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 174 (370)
++.||.|+ .|.+ ..+. ...+.+-+|+..+.|+||.+.
T Consensus 14 ~~yd~~tKk~WvP--s~~~---------~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 14 FQIDPKTKKNWIP--ASKH---------AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred EEECCCCcceeEe--CCCC---------ceeEEEEecCCCcEEEEEEec
Confidence 88999986 7753 3321 336788899999999999863
No 93
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=48.35 E-value=41 Score=25.54 Aligned_cols=40 Identities=15% Similarity=0.046 Sum_probs=27.9
Q ss_pred EEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEE
Q 037087 127 NLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVL 174 (370)
Q Consensus 127 ~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~ 174 (370)
.+.||.|+.|.+.-+.+ .......+.+++..+.|+|+...
T Consensus 12 m~~d~~tk~W~P~~~~~--------~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 12 MVYDDSNKKWVPAGGGS--------QGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred eEEcCCCCcEEcCCCCC--------CCcceEEEEEcCCCCEEEEEEee
Confidence 78899999865442211 12445777888989999999763
No 94
>PLN02772 guanylate kinase
Probab=46.12 E-value=1.1e+02 Score=28.97 Aligned_cols=72 Identities=8% Similarity=0.057 Sum_probs=48.6
Q ss_pred cceEEccEEEEEEeCCCC---ccEEEEEECCCcceeEeCC----CCCCCccccccccCCCceEEEECCeEEEEEecCCCc
Q 037087 219 DDVYLNGFCYWVVHRPDY---YKEILKFSMTDEVFQVIQG----PNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAH 291 (370)
Q Consensus 219 ~~v~~~G~lywl~~~~~~---~~~il~fD~~~~~~~~i~~----P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~ 291 (370)
.++.++.++|-...+.++ ...+..||..+.+|..-.. |.... ++ .. ++.-+++|-++... ...
T Consensus 29 tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~-----Gh-Sa---~v~~~~rilv~~~~-~~~ 98 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK-----GY-SA---VVLNKDRILVIKKG-SAP 98 (398)
T ss_pred eeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCC-----cc-eE---EEECCceEEEEeCC-CCC
Confidence 389999999998865432 2479999999999987542 33222 12 12 34557888888763 444
Q ss_pred eEEEEEecC
Q 037087 292 SFDLWIMKG 300 (370)
Q Consensus 292 ~l~IW~l~~ 300 (370)
.=+||.|+-
T Consensus 99 ~~~~w~l~~ 107 (398)
T PLN02772 99 DDSIWFLEV 107 (398)
T ss_pred ccceEEEEc
Confidence 578899986
No 95
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=45.32 E-value=3.7e+02 Score=27.83 Aligned_cols=118 Identities=9% Similarity=0.131 Sum_probs=64.0
Q ss_pred ceEEccEEEEEEeCC--------CCccEEEEEECCCcceeEeCCCCCCC--ccccccccCCCceEEEE-CCeEEEEEecC
Q 037087 220 DVYLNGFCYWVVHRP--------DYYKEILKFSMTDEVFQVIQGPNIPQ--LLNYYESAMRPWMLGIY-DDYLSILYSEE 288 (370)
Q Consensus 220 ~v~~~G~lywl~~~~--------~~~~~il~fD~~~~~~~~i~~P~~~~--~~~~~~~~~~~~~l~~~-~g~L~~~~~~~ 288 (370)
.++..++.||+.... .....+++.+.+++.|....+|...- .++-....+. -+..+. ++.|++-+.
T Consensus 251 ~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~-t~~~N~tGDWiA~g~~-- 327 (893)
T KOG0291|consen 251 IFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKIL-TVSFNSTGDWIAFGCS-- 327 (893)
T ss_pred eEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceee-EEEecccCCEEEEcCC--
Confidence 577888888887553 12468999999999999999998421 0111112222 001122 334555554
Q ss_pred CCceEEEEEecCCceeEEEEecCCcceeeeeEEeeCCeEEEE-eCCCeEEEEECC
Q 037087 289 MAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQ-SSDKRLVLYDST 342 (370)
Q Consensus 289 ~~~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~yd~~ 342 (370)
.-+.+-||.++.++...+..= ..+ -..-+.+..+|.++.. .++++|=+||..
T Consensus 328 klgQLlVweWqsEsYVlKQQg-H~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESYVLKQQG-HSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred ccceEEEEEeeccceeeeccc-ccc-ceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence 567899998887554443320 000 1122333445554443 334455555544
No 96
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=45.03 E-value=2.6e+02 Score=26.04 Aligned_cols=137 Identities=10% Similarity=0.014 Sum_probs=73.2
Q ss_pred CcEEEEEcCCCceecCCCCCCCccccccCCc-ceEEccEEEEEEeCCCCccEEEEEECCCcc--eeEeCCCCCCCccccc
Q 037087 189 SPAAVYNFTTNCWRDLGGFPMSRHYRFEGAD-DVYLNGFCYWVVHRPDYYKEILKFSMTDEV--FQVIQGPNIPQLLNYY 265 (370)
Q Consensus 189 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~il~fD~~~~~--~~~i~~P~~~~~~~~~ 265 (370)
.........+..|.......... .+... ++..+|++|.....+ .|.+||..+.+ |+.-... ... .
T Consensus 35 ~~~~~~~~g~~~W~~~~~~~~~~---~~~~~~~~~~dg~v~~~~~~G----~i~A~d~~~g~~~W~~~~~~-~~~---~- 102 (370)
T COG1520 35 VAVANNTSGTLLWSVSLGSGGGG---IYAGPAPADGDGTVYVGTRDG----NIFALNPDTGLVKWSYPLLG-AVA---Q- 102 (370)
T ss_pred eEEEcccCcceeeeeecccCccc---eEeccccEeeCCeEEEecCCC----cEEEEeCCCCcEEecccCcC-cce---e-
Confidence 34444555666786521111111 23333 499999999986665 69999999877 3322222 000 0
Q ss_pred cccCCCceEEEECCeEEEEEecCCCceEEEEEecC----CceeEEEEecCCcceeeeeEEeeCCeEEEEeCCCeEEEEEC
Q 037087 266 ESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKG----RSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDS 341 (370)
Q Consensus 266 ~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~ 341 (370)
.... +...+|++.+-.... .++.|++ ..|.....- . .....+. +..++.+++...++.++..|.
T Consensus 103 -~~~~---~~~~~G~i~~g~~~g-----~~y~ld~~~G~~~W~~~~~~-~-~~~~~~~-v~~~~~v~~~s~~g~~~al~~ 170 (370)
T COG1520 103 -LSGP---ILGSDGKIYVGSWDG-----KLYALDASTGTLVWSRNVGG-S-PYYASPP-VVGDGTVYVGTDDGHLYALNA 170 (370)
T ss_pred -ccCc---eEEeCCeEEEecccc-----eEEEEECCCCcEEEEEecCC-C-eEEecCc-EEcCcEEEEecCCCeEEEEEc
Confidence 0111 333477765555421 5566665 344443322 0 1111121 223556666656788999999
Q ss_pred CCCcEEEE
Q 037087 342 TYEEMRDL 349 (370)
Q Consensus 342 ~~~~~~~v 349 (370)
+|++.++.
T Consensus 171 ~tG~~~W~ 178 (370)
T COG1520 171 DTGTLKWT 178 (370)
T ss_pred cCCcEEEE
Confidence 98887654
No 97
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=43.76 E-value=4.2e+02 Score=27.99 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=32.5
Q ss_pred CCceEEEEEecC----CceeEEEEec-CC-cceeeeeEEe-eCCeEEEEeCCCeEEEEECCCCc
Q 037087 289 MAHSFDLWIMKG----RSWTKQFTFG-PF-IETYQPLTFW-RKGEFLLQSSDKRLVLYDSTYEE 345 (370)
Q Consensus 289 ~~~~l~IW~l~~----~~W~~~~~i~-~~-~~~~~~~~~~-~~~~ll~~~~~~~~~~yd~~~~~ 345 (370)
..+.+.||.+++ ..|..+..-. .. ..+..-++-. ++|.+++...++.|.+|+.++.+
T Consensus 158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence 347899999998 5555544321 11 1111112212 35777777777778888876543
No 98
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=42.72 E-value=2.5e+02 Score=25.08 Aligned_cols=113 Identities=18% Similarity=0.034 Sum_probs=66.8
Q ss_pred EccEEEEEEeCCCCccEEEEEECCCcce-eEeCCCCCCCccccccccCCCceEEEECCeEEEEEecCCCceEEEEEecCC
Q 037087 223 LNGFCYWVVHRPDYYKEILKFSMTDEVF-QVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKGR 301 (370)
Q Consensus 223 ~~G~lywl~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~~ 301 (370)
.+|.+|=-+... ++-.|-.+|+.+++. ...++|...- ++. ++..+++|..+.. ..+..-++-.+.
T Consensus 54 ~~g~LyESTG~y-G~S~l~~~d~~tg~~~~~~~l~~~~F-----gEG-----it~~~d~l~qLTW--k~~~~f~yd~~t- 119 (264)
T PF05096_consen 54 DDGTLYESTGLY-GQSSLRKVDLETGKVLQSVPLPPRYF-----GEG-----ITILGDKLYQLTW--KEGTGFVYDPNT- 119 (264)
T ss_dssp ETTEEEEEECST-TEEEEEEEETTTSSEEEEEE-TTT-------EEE-----EEEETTEEEEEES--SSSEEEEEETTT-
T ss_pred CCCEEEEeCCCC-CcEEEEEEECCCCcEEEEEECCcccc-----cee-----EEEECCEEEEEEe--cCCeEEEEcccc-
Confidence 456766655543 356899999999866 5678887432 122 7888999999998 445555555543
Q ss_pred ceeEEEEecCCcceeeeeEEeeCCeEEEEeCCCeEEEEECCCC-cEEEEEEe
Q 037087 302 SWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYE-EMRDLGIT 352 (370)
Q Consensus 302 ~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~-~~~~v~~~ 352 (370)
..++.++.... -...++ .++..+++...+.++++.|+++= ..++|.+.
T Consensus 120 -l~~~~~~~y~~-EGWGLt-~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 120 -LKKIGTFPYPG-EGWGLT-SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp -TEEEEEEE-SS-S--EEE-ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred -ceEEEEEecCC-cceEEE-cCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence 44444444321 233333 22445777778889999999874 45666664
No 99
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=42.56 E-value=3e+02 Score=25.93 Aligned_cols=102 Identities=13% Similarity=0.067 Sum_probs=54.7
Q ss_pred ceEEccEEEEEEeCCCCccEEEEEECCCcceeEeCCCCCCCccccccccCCCceEEEECCeEEEEEecCCCceEEEEEec
Q 037087 220 DVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMK 299 (370)
Q Consensus 220 ~v~~~G~lywl~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~ 299 (370)
.+..+|.+|.....+ .+.++|..+.+..+-. +.... ..... .+..+|.|++... ...+...-.+
T Consensus 290 ~~~~~~~vy~~~~~g----~l~ald~~tG~~~W~~-~~~~~-----~~~~s---p~v~~g~l~v~~~---~G~l~~ld~~ 353 (394)
T PRK11138 290 FAVDGGRIYLVDQND----RVYALDTRGGVELWSQ-SDLLH-----RLLTA---PVLYNGYLVVGDS---EGYLHWINRE 353 (394)
T ss_pred cEEECCEEEEEcCCC----eEEEEECCCCcEEEcc-cccCC-----CcccC---CEEECCEEEEEeC---CCEEEEEECC
Confidence 466788888877665 6999999876543321 11000 01111 3446777765543 2333333333
Q ss_pred C--CceeEEEEecCCcceeeeeEEeeCCeEEEEeCCCeEEEEEC
Q 037087 300 G--RSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDS 341 (370)
Q Consensus 300 ~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~ 341 (370)
+ ..|... +........|+. .++.|++...++.|+.+++
T Consensus 354 tG~~~~~~~--~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 354 DGRFVAQQK--VDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCEEEEEE--cCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 3 234332 221112234554 3668888888888988764
No 100
>PLN00181 protein SPA1-RELATED; Provisional
Probab=42.39 E-value=4.3e+02 Score=27.75 Aligned_cols=66 Identities=12% Similarity=0.180 Sum_probs=39.4
Q ss_pred ECCeEEEEEecCCCceEEEEEecC----CceeEEEEecCCcceeeeeEEeeCCeEEEE-eCCCeEEEEECCCC
Q 037087 277 YDDYLSILYSEEMAHSFDLWIMKG----RSWTKQFTFGPFIETYQPLTFWRKGEFLLQ-SSDKRLVLYDSTYE 344 (370)
Q Consensus 277 ~~g~L~~~~~~~~~~~l~IW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~yd~~~~ 344 (370)
.++...+... ....+.||.+.. ..|..+..+.-......-+++..++.++.. ..++.+.+||..+.
T Consensus 670 ~~~~~lvs~s--~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 670 VDSSTLVSSS--TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred eCCCEEEEEE--CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 4565544444 557899999875 245555555432222334555555655544 56788999997654
No 101
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=40.73 E-value=24 Score=21.91 Aligned_cols=20 Identities=0% Similarity=0.111 Sum_probs=16.6
Q ss_pred CeeEEEecccccccccCCCcc
Q 037087 124 THINLWNVSMDEYRVVPRYKV 144 (370)
Q Consensus 124 ~~~~V~NP~T~~~~~lP~~~~ 144 (370)
.+ ++.||.|++|.+++..|.
T Consensus 20 d~-~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 20 DV-WVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred CE-EEEECCCCEEEECCCCCC
Confidence 56 999999999999966544
No 102
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=40.39 E-value=3.8e+02 Score=26.54 Aligned_cols=114 Identities=13% Similarity=0.123 Sum_probs=65.1
Q ss_pred cEEEEEECCCcceeEeCCCCCCCccccccccCCCceEEEECCeEEEEEecCCCceEEEEEecCCceeEEEEecCCcceee
Q 037087 238 KEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQ 317 (370)
Q Consensus 238 ~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~ 317 (370)
..|+.|++..+..+..---. .+ + .... ......++.++........++.|..++..=..+..... ....
T Consensus 80 g~v~~ys~~~g~it~~~st~-~h---~--~~v~---~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~--~~~~ 148 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTD-KH---Y--GNVN---EILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK--PLVS 148 (541)
T ss_pred ccEEEEEecCCeEEEEEecC-CC---C--Ccce---eeecccccCceEecCCceeEEEEecccceeeeeeccCC--Cccc
Confidence 37899998887765542111 11 1 1112 33446667666665677888999988722122222221 1344
Q ss_pred eeEEeeCCeEEEEeCCCeEEEEECCCCcEEEEEEeccee--eEEEeeec
Q 037087 318 PLTFWRKGEFLLQSSDKRLVLYDSTYEEMRDLGITGLWF--SVNILKES 364 (370)
Q Consensus 318 ~~~~~~~~~ll~~~~~~~~~~yd~~~~~~~~v~~~~~~~--~~~~~~~s 364 (370)
-+++..+|.+++. .++++-+||.+++++-. .|.|... +.+.|+.+
T Consensus 149 sl~is~D~~~l~~-as~~ik~~~~~~kevv~-~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 149 SLCISPDGKILLT-ASRQIKVLDIETKEVVI-TFTGHGSPVRTLSFTTL 195 (541)
T ss_pred eEEEcCCCCEEEe-ccceEEEEEccCceEEE-EecCCCcceEEEEEEEe
Confidence 5666678888776 46789999999887532 2334332 33555444
No 103
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.58 E-value=3.2e+02 Score=25.51 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=71.0
Q ss_pred CCCcEEEEEcCCCceecCCCCCCCccccccCC-cceEEccEEEEEEeCC------CCccEEEEEECCCcceeEe-CCCCC
Q 037087 187 EFSPAAVYNFTTNCWRDLGGFPMSRHYRFEGA-DDVYLNGFCYWVVHRP------DYYKEILKFSMTDEVFQVI-QGPNI 258 (370)
Q Consensus 187 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~-~~v~~~G~lywl~~~~------~~~~~il~fD~~~~~~~~i-~~P~~ 258 (370)
....+-+|+..++.|+.... .|+ .... .++...|..-++...+ +......-|...+.+|..+ .+|..
T Consensus 194 ~n~ev~sy~p~~n~W~~~G~--~pf---~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~ 268 (381)
T COG3055 194 FNKEVLSYDPSTNQWRNLGE--NPF---YGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAP 268 (381)
T ss_pred ccccccccccccchhhhcCc--Ccc---cCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCC
Confidence 35567789999999998542 232 1111 2555555544544333 1224555566667777776 34554
Q ss_pred CCcccccc-ccCCCceEEEECCeEEEEEec--------------------CCCceEEEEEecCCceeEEEEecCCcceee
Q 037087 259 PQLLNYYE-SAMRPWMLGIYDDYLSILYSE--------------------EMAHSFDLWIMKGRSWTKQFTFGPFIETYQ 317 (370)
Q Consensus 259 ~~~~~~~~-~~~~~~~l~~~~g~L~~~~~~--------------------~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~ 317 (370)
... +.+. .... -+..+|.+-+.... ...-+-+||.+++.+|..+..++. ....
T Consensus 269 ~~~-~~eGvAGaf---~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp~--~l~Y 342 (381)
T COG3055 269 IGS-NKEGVAGAF---SGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQ--GLAY 342 (381)
T ss_pred CCC-Cccccceec---cceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecccCC--Cccc
Confidence 331 1111 0111 13444554443321 122356889999999999998764 2333
Q ss_pred eeEEeeCCeEEEE
Q 037087 318 PLTFWRKGEFLLQ 330 (370)
Q Consensus 318 ~~~~~~~~~ll~~ 330 (370)
-+.+.-++.++++
T Consensus 343 G~s~~~nn~vl~I 355 (381)
T COG3055 343 GVSLSYNNKVLLI 355 (381)
T ss_pred eEEEecCCcEEEE
Confidence 3444446666655
No 104
>PRK04043 tolB translocation protein TolB; Provisional
Probab=38.86 E-value=3.6e+02 Score=25.86 Aligned_cols=101 Identities=9% Similarity=0.085 Sum_probs=55.8
Q ss_pred cEEEEEECCCcceeEeCCCCCCCccccccccCCCceEEEECC-eEEEEEecCCCceEEEEEecC--CceeEEEEecCCcc
Q 037087 238 KEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDD-YLSILYSEEMAHSFDLWIMKG--RSWTKQFTFGPFIE 314 (370)
Q Consensus 238 ~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g-~L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i~~~~~ 314 (370)
..|..+|+.+.+-+.+--..... .... ..-+| +|.+... ....-+||.++- +.+.++-.... .
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~------~~~~----~SPDG~~la~~~~--~~g~~~Iy~~dl~~g~~~~LT~~~~--~ 278 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGML------VVSD----VSKDGSKLLLTMA--PKGQPDIYLYDTNTKTLTQITNYPG--I 278 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcE------EeeE----ECCCCCEEEEEEc--cCCCcEEEEEECCCCcEEEcccCCC--c
Confidence 47888999887766653222111 0011 12355 4655554 234567888874 55554432211 0
Q ss_pred eeeeeEEeeCC-eEEEEeC---CCeEEEEECCCCcEEEEEEec
Q 037087 315 TYQPLTFWRKG-EFLLQSS---DKRLVLYDSTYEEMRDLGITG 353 (370)
Q Consensus 315 ~~~~~~~~~~~-~ll~~~~---~~~~~~yd~~~~~~~~v~~~~ 353 (370)
...| ....+| .|+|... ..+++.+|+++++.+++-..|
T Consensus 279 d~~p-~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g 320 (419)
T PRK04043 279 DVNG-NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG 320 (419)
T ss_pred cCcc-EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC
Confidence 1122 233455 5777632 237999999999998886543
No 105
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=38.80 E-value=2.8e+02 Score=24.52 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=24.2
Q ss_pred eCCeEEEEeCCCeEEEEECCCCcEEEEE
Q 037087 323 RKGEFLLQSSDKRLVLYDSTYEEMRDLG 350 (370)
Q Consensus 323 ~~~~ll~~~~~~~~~~yd~~~~~~~~v~ 350 (370)
+.+.|++...+..++..|++++++++.-
T Consensus 125 ~enSi~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred CCCcEEEecCCeEEEEEEecCCEEEEEE
Confidence 4678899888999999999999998763
No 106
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=38.39 E-value=1.9e+02 Score=24.38 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=32.4
Q ss_pred EEEEecC--CceeEEEEecCCcceeee-eEEeeC-CeEEEE--------eCCCeEEEEECCCCcEEEEEE
Q 037087 294 DLWIMKG--RSWTKQFTFGPFIETYQP-LTFWRK-GEFLLQ--------SSDKRLVLYDSTYEEMRDLGI 351 (370)
Q Consensus 294 ~IW~l~~--~~W~~~~~i~~~~~~~~~-~~~~~~-~~ll~~--------~~~~~~~~yd~~~~~~~~v~~ 351 (370)
.||+.+- .+|..+ .|++.+.-..| ...|-+ ..|+++ ...+.||.||+.|++++.+--
T Consensus 89 kIYIkn~~~~~~~~L-~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 89 KIYIKNLNNNNWWSL-QIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred eEEEEecCCCceEEE-EecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 4677665 556332 24443322223 334543 344433 235789999999999988754
No 107
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=36.25 E-value=77 Score=24.46 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=24.1
Q ss_pred EeeCCeEEEE-e----CCCeEEEEECCCCcEEEEEEe
Q 037087 321 FWRKGEFLLQ-S----SDKRLVLYDSTYEEMRDLGIT 352 (370)
Q Consensus 321 ~~~~~~ll~~-~----~~~~~~~yd~~~~~~~~v~~~ 352 (370)
++-||-++.. . ....++.||+++++++.+..+
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P 38 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLP 38 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEee
Confidence 3456777554 2 246799999999999999985
No 108
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=35.13 E-value=3e+02 Score=27.08 Aligned_cols=60 Identities=15% Similarity=0.298 Sum_probs=33.5
Q ss_pred CCceEEEEEecC-----CceeEEEEecCCcceeeeeEEeeCCeEEEEe-------CCCeEEEEECCC-CcEEEEEEe
Q 037087 289 MAHSFDLWIMKG-----RSWTKQFTFGPFIETYQPLTFWRKGEFLLQS-------SDKRLVLYDSTY-EEMRDLGIT 352 (370)
Q Consensus 289 ~~~~l~IW~l~~-----~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~-------~~~~~~~yd~~~-~~~~~v~~~ 352 (370)
....|.+|-|.+ ..|+-+.+. . -..-+++..+.+|+|.. ..+.|++||..| ..+.+|.|.
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~--~--~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTP--F--PGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCcc--C--CCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence 455677777766 233322221 1 12235556678888863 235699999876 344566554
No 109
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=34.76 E-value=1.3e+02 Score=31.19 Aligned_cols=57 Identities=19% Similarity=0.400 Sum_probs=39.5
Q ss_pred CCCceEEEEEecC--------CceeEEEEecCCcceeeeeEEeeCCeEEEEeCCCeEEEEECCCC
Q 037087 288 EMAHSFDLWIMKG--------RSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYE 344 (370)
Q Consensus 288 ~~~~~l~IW~l~~--------~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~ 344 (370)
+....+.||++.+ ..|..+..=.....-..-.++.++|.++....++.+-.||..++
T Consensus 476 ~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 476 SVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred ccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 3668999999955 77998773222110112234456888888888899999999983
No 110
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=34.17 E-value=1.2e+02 Score=23.45 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=20.5
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEEEecce
Q 037087 327 FLLQSSDKRLVLYDSTYEEMRDLGITGLW 355 (370)
Q Consensus 327 ll~~~~~~~~~~yd~~~~~~~~v~~~~~~ 355 (370)
|+-....-.++.||.++++|++.+++|..
T Consensus 22 Il~~a~~v~vY~f~~~~~~W~K~~iEG~L 50 (122)
T PF06058_consen 22 ILDTASHVVVYKFDHETNEWEKTDIEGTL 50 (122)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred HHhhCCeEEEEeecCCCCcEeecCcEeeE
Confidence 33333333577788999999999998854
No 111
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.27 E-value=4e+02 Score=24.96 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=38.6
Q ss_pred CCceEEEEEecCCceeEEEEecCCcceeeeeEEeeCCeEEEE-eCCCeEEEEECCCCcEEEE
Q 037087 289 MAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQ-SSDKRLVLYDSTYEEMRDL 349 (370)
Q Consensus 289 ~~~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~yd~~~~~~~~v 349 (370)
...++.||-+.-. ..++.+.-...-.+.+++..+|+.++. .+++.+-+||+++++-.+.
T Consensus 312 rDktIk~wdv~tg--~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 312 RDKTIKIWDVSTG--MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred ccceEEEEeccCC--eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 4577888877753 233343333334556666778887775 6677899999999875444
No 112
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=32.90 E-value=1.9e+02 Score=25.54 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=41.9
Q ss_pred EECCeEEEEEecCCCceEEEEEecCCceeEEEEecCCcceeeeeEEeeCCeEEEEeCCCeEEEEECCCCc
Q 037087 276 IYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEE 345 (370)
Q Consensus 276 ~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~ 345 (370)
..+|+...-.. +.+++.||-|..-+=.+.+... .+ +...+-.-+.++++....++.+-++|+.++.
T Consensus 92 ~~dgrWMyTgs--eDgt~kIWdlR~~~~qR~~~~~-sp-Vn~vvlhpnQteLis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 92 QCDGRWMYTGS--EDGTVKIWDLRSLSCQRNYQHN-SP-VNTVVLHPNQTELISGDQSGNIRVWDLGENS 157 (311)
T ss_pred eecCeEEEecC--CCceEEEEeccCcccchhccCC-CC-cceEEecCCcceEEeecCCCcEEEEEccCCc
Confidence 66777666555 7789999999872223333322 11 1222222245788888888999999998873
No 113
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=32.70 E-value=4.8e+02 Score=25.48 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=22.3
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEEEe
Q 037087 324 KGEFLLQSSDKRLVLYDSTYEEMRDLGIT 352 (370)
Q Consensus 324 ~~~ll~~~~~~~~~~yd~~~~~~~~v~~~ 352 (370)
+..|+|+ ..+.++.||++|.+++++.|.
T Consensus 278 GkrIvFq-~~GdIylydP~td~lekldI~ 305 (668)
T COG4946 278 GKRIVFQ-NAGDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred CcEEEEe-cCCcEEEeCCCcCcceeeecC
Confidence 3346665 566799999999999999985
No 114
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=32.68 E-value=2.6e+02 Score=28.45 Aligned_cols=61 Identities=11% Similarity=0.155 Sum_probs=39.4
Q ss_pred EECCeEEEEEecCCCceEEEEEecCCceeEEEEecCCcceeeeeEEeeCCeEEEEeCCCeEEEEECC
Q 037087 276 IYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDST 342 (370)
Q Consensus 276 ~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~ 342 (370)
..++.+.+.+. +.++++||.-++ ....|....-...-..+..+|+|++...++.+.+|-.+
T Consensus 228 ~~~~~~Ivs~g--EDrtlriW~~~e----~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 228 ALSDGLIVSTG--EDRTLRIWKKDE----CVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred cCCCCeEEEec--CCceEEEeecCc----eEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 44566777776 789999998883 22333322112344555668898888888877777655
No 115
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=32.33 E-value=99 Score=17.45 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=22.9
Q ss_pred eeEEEEecCCcceeeeeEEeeCCeEEEE-eCCCeEEEEE
Q 037087 303 WTKQFTFGPFIETYQPLTFWRKGEFLLQ-SSDKRLVLYD 340 (370)
Q Consensus 303 W~~~~~i~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~yd 340 (370)
|..+..+........-+.+..++..++. ..++.+.+||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4555665544334445566666666654 6677888876
No 116
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=32.27 E-value=1.1e+02 Score=24.77 Aligned_cols=11 Identities=9% Similarity=0.365 Sum_probs=5.9
Q ss_pred EEEEEcCCCce
Q 037087 191 AAVYNFTTNCW 201 (370)
Q Consensus 191 ~~vyss~t~~W 201 (370)
+-.|++.+.+-
T Consensus 23 IlsFDl~~E~F 33 (164)
T PF07734_consen 23 ILSFDLSTEKF 33 (164)
T ss_pred EEEEecccccc
Confidence 44555555555
No 117
>PLN02772 guanylate kinase
Probab=31.92 E-value=1.9e+02 Score=27.57 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=50.2
Q ss_pred EEEECCeEEEEEecCCC--ceEEEEEecC--CceeEEEEec--CCcceeeeeEEeeCCeEEEEeC----CCeEEEEECCC
Q 037087 274 LGIYDDYLSILYSEEMA--HSFDLWIMKG--RSWTKQFTFG--PFIETYQPLTFWRKGEFLLQSS----DKRLVLYDSTY 343 (370)
Q Consensus 274 l~~~~g~L~~~~~~~~~--~~l~IW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~ll~~~~----~~~~~~yd~~~ 343 (370)
.+..+++++++....+. ....+|+++- ..|+.--..+ |.+.-.+-.++.+++.||+... +..+.+..++|
T Consensus 30 av~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~~~t 109 (398)
T PLN02772 30 SVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIWFLEVDT 109 (398)
T ss_pred eEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccceEEEEcCC
Confidence 57889999999964222 5788999998 8898866444 3333345566666778877642 45677888777
Q ss_pred CcE
Q 037087 344 EEM 346 (370)
Q Consensus 344 ~~~ 346 (370)
.-+
T Consensus 110 ~~~ 112 (398)
T PLN02772 110 PFV 112 (398)
T ss_pred HHH
Confidence 443
No 118
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=31.71 E-value=4e+02 Score=24.66 Aligned_cols=108 Identities=20% Similarity=0.253 Sum_probs=56.2
Q ss_pred ccEEEEEECCCcceeEeCCCCCCCccccccccCCCceEE-EECCe-EEEEEecCCCceEEEEEecC----CceeEEEEec
Q 037087 237 YKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLG-IYDDY-LSILYSEEMAHSFDLWIMKG----RSWTKQFTFG 310 (370)
Q Consensus 237 ~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~-~~~g~-L~~~~~~~~~~~l~IW~l~~----~~W~~~~~i~ 310 (370)
...+.++|+.+.+...+..|.... ..+..... +. .-+++ |.+....+....+.+...+- ..+.....-+
T Consensus 157 ~v~l~v~~~~~~~~~~~~~~~~~~--~~~~yl~~---v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 157 RVSLFVVDLASGKTTELDPPNSLN--PQDYYLTR---VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp EEEEEEEESSSTCCCEE---HHHH--TSSEEEEE---EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred ceEEEEEECCCCcEEEeeeccccC--CCccCccc---ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 357888999998888887773211 11111111 22 33555 77666666777777777765 2222222111
Q ss_pred CCcceeeeeEEe--eCCeEEEE-eCC--CeEEEEECCCCcEEEE
Q 037087 311 PFIETYQPLTFW--RKGEFLLQ-SSD--KRLVLYDSTYEEMRDL 349 (370)
Q Consensus 311 ~~~~~~~~~~~~--~~~~ll~~-~~~--~~~~~yd~~~~~~~~v 349 (370)
.--....+..+. +++.+++. ..+ .+|+.||..++..+.+
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l 275 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL 275 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc
Confidence 000123344443 45566554 333 3799999998876644
No 119
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=30.52 E-value=1.6e+02 Score=21.39 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=18.8
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEE
Q 037087 324 KGEFLLQSSDKRLVLYDSTYEEMR 347 (370)
Q Consensus 324 ~~~ll~~~~~~~~~~yd~~~~~~~ 347 (370)
....++.++..+++++|+.++.++
T Consensus 16 kkR~LiLTd~PrL~yvdp~~~~~K 39 (89)
T cd01262 16 KKRQLILTNGPRLIYVDPVKKVVK 39 (89)
T ss_pred ceeeEEEecCceEEEEcCCcCeEE
Confidence 445556667889999999998887
No 120
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=29.54 E-value=4.2e+02 Score=26.50 Aligned_cols=105 Identities=13% Similarity=0.176 Sum_probs=53.7
Q ss_pred EEEEEeCCCCccEEEEEECCCcceeEeCCCCCCCccccccccCCCceEEEECCeEEEEEecCCCceEEEEEecCCceeEE
Q 037087 227 CYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMKGRSWTKQ 306 (370)
Q Consensus 227 lywl~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~ 306 (370)
+|..+... .|..||++-++|-. |.... ......+. +-+.+|-|++-. ..+.++-|-..+.+=...
T Consensus 148 ly~~gsg~----evYRlNLEqGrfL~---P~~~~--~~~lN~v~---in~~hgLla~Gt---~~g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 148 LYLVGSGS----EVYRLNLEQGRFLN---PFETD--SGELNVVS---INEEHGLLACGT---EDGVVEFWDPRDKSRVGT 212 (703)
T ss_pred EEEeecCc----ceEEEEcccccccc---ccccc--cccceeee---ecCccceEEecc---cCceEEEecchhhhhhee
Confidence 45444444 58999998887732 22111 11111222 334455444333 557888898777211111
Q ss_pred E----EecCCcce-----eeeeEEeeCCe-EEEEeCCCeEEEEECCCCcE
Q 037087 307 F----TFGPFIET-----YQPLTFWRKGE-FLLQSSDKRLVLYDSTYEEM 346 (370)
Q Consensus 307 ~----~i~~~~~~-----~~~~~~~~~~~-ll~~~~~~~~~~yd~~~~~~ 346 (370)
. .|+..++. ...+.+.++|- +=+....+.+++||+++.+=
T Consensus 213 l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 213 LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred eecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 1 12212211 23344444443 34557788999999997653
No 121
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=28.71 E-value=4.2e+02 Score=23.55 Aligned_cols=107 Identities=14% Similarity=0.084 Sum_probs=63.4
Q ss_pred EEEEEECCCcceeEeCCCCCCCccccccccCCCceEE-EECCeEEEEEecCCCceEEEEEecC----CceeEEEEecCCc
Q 037087 239 EILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLG-IYDDYLSILYSEEMAHSFDLWIMKG----RSWTKQFTFGPFI 313 (370)
Q Consensus 239 ~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~-~~~g~L~~~~~~~~~~~l~IW~l~~----~~W~~~~~i~~~~ 313 (370)
.|-+-|+.+..+....+|.... ..-. |. ..+|+.-.+.. ..+..-+|.|-. ..-..+.++....
T Consensus 147 ~irvWDl~~~~c~~~liPe~~~------~i~s---l~v~~dgsml~a~n--nkG~cyvW~l~~~~~~s~l~P~~k~~ah~ 215 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPEDDT------SIQS---LTVMPDGSMLAAAN--NKGNCYVWRLLNHQTASELEPVHKFQAHN 215 (311)
T ss_pred cEEEEEccCCccccccCCCCCc------ceee---EEEcCCCcEEEEec--CCccEEEEEccCCCccccceEhhheeccc
Confidence 6889999999998888888543 1111 33 44566444444 557777888765 2223333333222
Q ss_pred ceeeeeEEeeCCeEEEE-eCCCeEEEEECCCCcEEEEEEeccee
Q 037087 314 ETYQPLTFWRKGEFLLQ-SSDKRLVLYDSTYEEMRDLGITGLWF 356 (370)
Q Consensus 314 ~~~~~~~~~~~~~ll~~-~~~~~~~~yd~~~~~~~~v~~~~~~~ 356 (370)
....-+.+..+++.+.. ..+..+.+|+.++--.-+..+.|...
T Consensus 216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r 259 (311)
T KOG0315|consen 216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR 259 (311)
T ss_pred ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc
Confidence 22233344456665554 56778999999887334556666543
No 122
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=28.27 E-value=4.2e+02 Score=23.44 Aligned_cols=103 Identities=13% Similarity=0.102 Sum_probs=57.8
Q ss_pred cEEEEEEeCCCCccEEEEEECCCcceeEe-CCCCCCCccccccccCCCceEEEECCeEE-EEEecCCCceEEEEEecCCc
Q 037087 225 GFCYWVVHRPDYYKEILKFSMTDEVFQVI-QGPNIPQLLNYYESAMRPWMLGIYDDYLS-ILYSEEMAHSFDLWIMKGRS 302 (370)
Q Consensus 225 G~lywl~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L~-~~~~~~~~~~l~IW~l~~~~ 302 (370)
|.+.+...+ ..|...|++++++++. +.-.+. .. .++.+..-. ++.. .+.++++||-++.+.
T Consensus 127 nSi~~AgGD----~~~y~~dlE~G~i~r~~rGHtDY---------vH---~vv~R~~~~qilsG-~EDGtvRvWd~kt~k 189 (325)
T KOG0649|consen 127 NSILFAGGD----GVIYQVDLEDGRIQREYRGHTDY---------VH---SVVGRNANGQILSG-AEDGTVRVWDTKTQK 189 (325)
T ss_pred CcEEEecCC----eEEEEEEecCCEEEEEEcCCcce---------ee---eeeecccCcceeec-CCCccEEEEeccccc
Confidence 566665533 3899999999999775 332211 11 233322221 2222 467899999999732
Q ss_pred eeEEEEecCC--cce------eeeeEEeeCCeEEEEeCCCeEEEEECCCCcE
Q 037087 303 WTKQFTFGPF--IET------YQPLTFWRKGEFLLQSSDKRLVLYDSTYEEM 346 (370)
Q Consensus 303 W~~~~~i~~~--~~~------~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~~ 346 (370)
=++. |.+. +.. ....++..+.+-+++....++-.|+++.-+-
T Consensus 190 ~v~~--ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~ 239 (325)
T KOG0649|consen 190 HVSM--IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSES 239 (325)
T ss_pred eeEE--eccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCc
Confidence 2222 2221 111 2234455566777777777888888876543
No 123
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=27.91 E-value=3.3e+02 Score=23.94 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=41.8
Q ss_pred EECCeEEEEEecCCCceEEEEEecCCceeEEEEecCCcceeeeeEEeeCCeEEEEeCCCeEEEEECCCCcE-EEEEEe
Q 037087 276 IYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEEM-RDLGIT 352 (370)
Q Consensus 276 ~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~~-~~v~~~ 352 (370)
+.+|.-|+.+. ...++.+|--..+.=.+.+.= ...++...-...++.++-=+..+..+.+||..|+++ ++.+-+
T Consensus 26 N~dGnY~ltcG--sdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH 100 (307)
T KOG0316|consen 26 NVDGNYCLTCG--SDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH 100 (307)
T ss_pred ccCCCEEEEcC--CCceEEeecccccceeeeecC-CCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccc
Confidence 55788888887 778999997765433333321 001111111112244444445677899999998764 455433
No 124
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.26 E-value=4.9e+02 Score=23.90 Aligned_cols=108 Identities=12% Similarity=0.133 Sum_probs=54.4
Q ss_pred ceEEccEEEEEEeCCCCccEEEEEECCCcc-eeEeCCCCCCCccccccccCCCceEEEECCeE---EEEEecCCCceEEE
Q 037087 220 DVYLNGFCYWVVHRPDYYKEILKFSMTDEV-FQVIQGPNIPQLLNYYESAMRPWMLGIYDDYL---SILYSEEMAHSFDL 295 (370)
Q Consensus 220 ~v~~~G~lywl~~~~~~~~~il~fD~~~~~-~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L---~~~~~~~~~~~l~I 295 (370)
+|.++|..---+..+ .-|-.||+.+.. ...+--+.+.- . ..-..+.+ -++.. .+.+.+.|
T Consensus 48 avAVs~~~~aSGssD---etI~IYDm~k~~qlg~ll~Hagsi---------t---aL~F~~~~S~shLlS~-sdDG~i~i 111 (362)
T KOG0294|consen 48 ALAVSGPYVASGSSD---ETIHIYDMRKRKQLGILLSHAGSI---------T---ALKFYPPLSKSHLLSG-SDDGHIII 111 (362)
T ss_pred EEEecceeEeccCCC---CcEEEEeccchhhhcceeccccce---------E---EEEecCCcchhheeee-cCCCcEEE
Confidence 777787643333333 368889987643 22222233211 0 11111111 22222 25577888
Q ss_pred EEecCCceeEEEEecCCcceeeeeEEeeCCeEEEE-eCCCeEEEEECCCCc
Q 037087 296 WIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQ-SSDKRLVLYDSTYEE 345 (370)
Q Consensus 296 W~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~yd~~~~~ 345 (370)
|..+ +|..+..+.....-...+.+...++|-+. .++..+-.||+-+++
T Consensus 112 w~~~--~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 112 WRVG--SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred EEcC--CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 8765 57777777654433445555666665443 344445555555444
No 125
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=26.23 E-value=6.3e+02 Score=24.74 Aligned_cols=112 Identities=11% Similarity=0.028 Sum_probs=60.8
Q ss_pred ceEEccEEEEEEeCCCCccEEEEEECCCcceeEeCCCCCCCccccccccCCCceEEEECCeEEEEEecCCCceEEEEEec
Q 037087 220 DVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSEEMAHSFDLWIMK 299 (370)
Q Consensus 220 ~v~~~G~lywl~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~l~IW~l~ 299 (370)
-..++|-++-+..++ ....++....-.-.+.-+..+. -.+ +......+.+.. .+...+.|.-.+
T Consensus 327 fa~~~Gd~ia~VSRG----kaFi~~~~~~~~iqv~~~~~Vr-------Y~r---~~~~~e~~vigt--~dgD~l~iyd~~ 390 (668)
T COG4946 327 FAVVNGDYIALVSRG----KAFIMRPWDGYSIQVGKKGGVR-------YRR---IQVDPEGDVIGT--NDGDKLGIYDKD 390 (668)
T ss_pred hccCCCcEEEEEecC----cEEEECCCCCeeEEcCCCCceE-------EEE---EccCCcceEEec--cCCceEEEEecC
Confidence 456788888888887 3555665543322222222211 011 223333222222 355566666555
Q ss_pred CCceeEEEEecCCcceeeeeEEeeCCe-EEEEeCCCeEEEEECCCCcEEEEE
Q 037087 300 GRSWTKQFTFGPFIETYQPLTFWRKGE-FLLQSSDKRLVLYDSTYEEMRDLG 350 (370)
Q Consensus 300 ~~~W~~~~~i~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~yd~~~~~~~~v~ 350 (370)
.. +..+|...-+....+.+..+|+ +++.-...++.++|++++..+.+.
T Consensus 391 ~~---e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 391 GG---EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred Cc---eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 32 1222322212344566677877 555556678999999999998885
No 126
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=25.98 E-value=9.1e+02 Score=26.55 Aligned_cols=122 Identities=18% Similarity=0.180 Sum_probs=66.6
Q ss_pred ccEEEEEEeCCCCccEEEEEECCCcceeEeCCCCC---CCc-cccccccCCCceEEEE-CCe-EEEEEecCCCceEEEEE
Q 037087 224 NGFCYWVVHRPDYYKEILKFSMTDEVFQVIQGPNI---PQL-LNYYESAMRPWMLGIY-DDY-LSILYSEEMAHSFDLWI 297 (370)
Q Consensus 224 ~G~lywl~~~~~~~~~il~fD~~~~~~~~i~~P~~---~~~-~~~~~~~~~~~~l~~~-~g~-L~~~~~~~~~~~l~IW~ 297 (370)
+|.+|...... ..|..+|..+.....+..... ... .........|+.+... +|+ |+++.. ..+.+.+|-
T Consensus 694 ~g~LyVad~~~---~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D 768 (1057)
T PLN02919 694 NEKVYIAMAGQ---HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALD 768 (1057)
T ss_pred CCeEEEEECCC---CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEE
Confidence 57788765544 378999998876655432110 000 0000011123334443 444 887776 668888888
Q ss_pred ecCCceeEEE-----------EecCCc------ceeee--eEEeeCCeEEEE-eCCCeEEEEECCCCcEEEEE
Q 037087 298 MKGRSWTKQF-----------TFGPFI------ETYQP--LTFWRKGEFLLQ-SSDKRLVLYDSTYEEMRDLG 350 (370)
Q Consensus 298 l~~~~W~~~~-----------~i~~~~------~~~~~--~~~~~~~~ll~~-~~~~~~~~yd~~~~~~~~v~ 350 (370)
++...-.... .+.... .+..| +++..+|.+++. ..++++..||++++.+..+.
T Consensus 769 ~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 769 LKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred CCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe
Confidence 8762211111 110000 12234 445567888886 45678999999998887664
No 127
>PTZ00420 coronin; Provisional
Probab=25.56 E-value=7.1e+02 Score=25.12 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=38.3
Q ss_pred ceEEEEEecC-CceeEEEEecCCcceeeeeEEeeCCeEEEE-eCCCeEEEEECCCCcEEEEE
Q 037087 291 HSFDLWIMKG-RSWTKQFTFGPFIETYQPLTFWRKGEFLLQ-SSDKRLVLYDSTYEEMRDLG 350 (370)
Q Consensus 291 ~~l~IW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~yd~~~~~~~~v~ 350 (370)
+.+.||-+.. ..-.....++.......|.+-..+|.+++. ..++.+.+|++.++.+..+.
T Consensus 240 R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 240 REMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred cEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 5799999997 443444444433333344444445666665 57889999999888766653
No 128
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=24.54 E-value=6.5e+02 Score=24.35 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=44.7
Q ss_pred EECCeEEEEEecCCCceEEEEEecC-CceeEEEEecCCcceeeeeEEeeCCeEEEE-eCCCeEEEEECCCCcEE-EEEEe
Q 037087 276 IYDDYLSILYSEEMAHSFDLWIMKG-RSWTKQFTFGPFIETYQPLTFWRKGEFLLQ-SSDKRLVLYDSTYEEMR-DLGIT 352 (370)
Q Consensus 276 ~~~g~L~~~~~~~~~~~l~IW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~yd~~~~~~~-~v~~~ 352 (370)
..+|+ +++.. ....++.||-+++ ..=.+... + ......-+++...|.+++. ..++.+.+||.++++.. .+..+
T Consensus 212 s~d~~-~l~s~-s~D~tiriwd~~~~~~~~~~l~-g-H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h 287 (456)
T KOG0266|consen 212 SPDGS-YLLSG-SDDKTLRIWDLKDDGRNLKTLK-G-HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH 287 (456)
T ss_pred CCCCc-EEEEe-cCCceEEEeeccCCCeEEEEec-C-CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc
Confidence 44555 44444 3779999999955 33233332 2 2223455666666666665 66788999999996544 44443
No 129
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.49 E-value=6.6e+02 Score=24.09 Aligned_cols=66 Identities=20% Similarity=0.358 Sum_probs=40.4
Q ss_pred EEECCeEEEEEecCCCceEEEEEecC---CceeEEEEecCCcceeeeeEEeeCCe-EEEEeCCCeEEEEECCCCcE
Q 037087 275 GIYDDYLSILYSEEMAHSFDLWIMKG---RSWTKQFTFGPFIETYQPLTFWRKGE-FLLQSSDKRLVLYDSTYEEM 346 (370)
Q Consensus 275 ~~~~g~L~~~~~~~~~~~l~IW~l~~---~~W~~~~~i~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~yd~~~~~~ 346 (370)
+-+-+...+++. ...+.+..|-+++ +.|.-+.. | ...-+++..+|+ ++....+.++..||.+++.=
T Consensus 319 ~W~pDg~~~V~G-s~dr~i~~wdlDgn~~~~W~gvr~--~---~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d 388 (519)
T KOG0293|consen 319 AWCPDGFRFVTG-SPDRTIIMWDLDGNILGNWEGVRD--P---KVHDLAITYDGKYVLLVTVDKKIRLYNREARVD 388 (519)
T ss_pred EEccCCceeEec-CCCCcEEEecCCcchhhccccccc--c---eeEEEEEcCCCcEEEEEecccceeeechhhhhh
Confidence 333333444444 2457889999998 88876653 1 234455555555 44456677788888776543
No 130
>PRK05137 tolB translocation protein TolB; Provisional
Probab=22.89 E-value=6.7e+02 Score=23.93 Aligned_cols=185 Identities=11% Similarity=0.051 Sum_probs=82.8
Q ss_pred CeeEEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCCcEEEEEcCCCceec
Q 037087 124 THINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFSPAAVYNFTTNCWRD 203 (370)
Q Consensus 124 ~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~ 203 (370)
.+ +++|+.|++.+.+...+. ......+.|+. +.-++... . .....+.+++..++.-+.
T Consensus 227 ~i-~~~dl~~g~~~~l~~~~g----------~~~~~~~SPDG-~~la~~~~----~------~g~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 227 RV-YLLDLETGQRELVGNFPG----------MTFAPRFSPDG-RKVVMSLS----Q------GGNTDIYTMDLRSGTTTR 284 (435)
T ss_pred EE-EEEECCCCcEEEeecCCC----------cccCcEECCCC-CEEEEEEe----c------CCCceEEEEECCCCceEE
Confidence 45 999999988776643221 11123334432 22222211 1 123456666777765544
Q ss_pred CCCCCCCccccccCCcceEEccE-EEEEEeCCCCccEEEEEECCCcceeEeCCCCCCCccccccccCCCceEEEECCe-E
Q 037087 204 LGGFPMSRHYRFEGADDVYLNGF-CYWVVHRPDYYKEILKFSMTDEVFQVIQGPNIPQLLNYYESAMRPWMLGIYDDY-L 281 (370)
Q Consensus 204 ~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~~~~~~~~~l~~~~g~-L 281 (370)
..... . ........-+|. +++.... .+...|..+|+.+...+.+....... .... . .-+|+ |
T Consensus 285 Lt~~~--~---~~~~~~~spDG~~i~f~s~~-~g~~~Iy~~d~~g~~~~~lt~~~~~~------~~~~---~-SpdG~~i 348 (435)
T PRK05137 285 LTDSP--A---IDTSPSYSPDGSQIVFESDR-SGSPQLYVMNADGSNPRRISFGGGRY------STPV---W-SPRGDLI 348 (435)
T ss_pred ccCCC--C---ccCceeEcCCCCEEEEEECC-CCCCeEEEEECCCCCeEEeecCCCcc------cCeE---E-CCCCCEE
Confidence 21100 0 000112333554 4444322 22346778888877665553211100 0111 1 22444 5
Q ss_pred EEEEecCCCceEEEEEecC-CceeEEEEecCCcceeeeeEEeeCCe-EEEEeC-C-----CeEEEEECCCCcEEEEEE
Q 037087 282 SILYSEEMAHSFDLWIMKG-RSWTKQFTFGPFIETYQPLTFWRKGE-FLLQSS-D-----KRLVLYDSTYEEMRDLGI 351 (370)
Q Consensus 282 ~~~~~~~~~~~l~IW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~-ll~~~~-~-----~~~~~yd~~~~~~~~v~~ 351 (370)
++... ......||+++- ....+...-. ..... ..+..+|+ |++... . .+++.+|++++..+.+..
T Consensus 349 a~~~~--~~~~~~i~~~d~~~~~~~~lt~~--~~~~~-p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 349 AFTKQ--GGGQFSIGVMKPDGSGERILTSG--FLVEG-PTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred EEEEc--CCCceEEEEEECCCCceEeccCC--CCCCC-CeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence 55554 223345555553 2222222111 11122 23344555 445432 1 379999999887776653
No 131
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=22.86 E-value=1.4e+02 Score=16.02 Aligned_cols=15 Identities=13% Similarity=0.198 Sum_probs=9.3
Q ss_pred eeEEeeCCeEEEEeC
Q 037087 318 PLTFWRKGEFLLQSS 332 (370)
Q Consensus 318 ~~~~~~~~~ll~~~~ 332 (370)
-+++..+|+|++...
T Consensus 6 gvav~~~g~i~VaD~ 20 (28)
T PF01436_consen 6 GVAVDSDGNIYVADS 20 (28)
T ss_dssp EEEEETTSEEEEEEC
T ss_pred EEEEeCCCCEEEEEC
Confidence 355556777777643
No 132
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=22.76 E-value=87 Score=22.99 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=23.6
Q ss_pred ceeeeecceEEEccC-----CCeeEEEecccccccc
Q 037087 108 NTTGPYDGIFLLLGD-----HTHINLWNVSMDEYRV 138 (370)
Q Consensus 108 ~~~~s~nGLl~~~~~-----~~~~~V~NP~T~~~~~ 138 (370)
.++.+.+||.+...+ ..+.-+|+|+|++.+.
T Consensus 35 kVieg~~GlFVaMPs~k~~~g~y~DI~~Pit~e~Re 70 (94)
T PRK13259 35 RVIEGNNGLFIAMPSKRTPDGEFRDIAHPINSDTRE 70 (94)
T ss_pred EEEECCCCeEEECcCcCCCCCcEEEEEccCCHHHHH
Confidence 478888999887754 2465799999988764
No 133
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.46 E-value=2.8e+02 Score=23.98 Aligned_cols=78 Identities=13% Similarity=0.048 Sum_probs=45.1
Q ss_pred EEEECCeEEEEEecCCCceEEEEEecC--CceeEEEEecCCcceeeeeEEeeCCeEEE-EeCCCeEEEEECCC-CcEEEE
Q 037087 274 LGIYDDYLSILYSEEMAHSFDLWIMKG--RSWTKQFTFGPFIETYQPLTFWRKGEFLL-QSSDKRLVLYDSTY-EEMRDL 349 (370)
Q Consensus 274 l~~~~g~L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~yd~~~-~~~~~v 349 (370)
|.-.+|.+...........+.+|.|+. ..|+.... +...+...+..+ ++.++. .-.++..+.||.+| +.+.++
T Consensus 51 L~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~--~~~~FgEGit~~-gd~~y~LTw~egvaf~~d~~t~~~lg~~ 127 (262)
T COG3823 51 LEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA--PDTVFGEGITKL-GDYFYQLTWKEGVAFKYDADTLEELGRF 127 (262)
T ss_pred eeeeCCEEEEeccccccceeEEEeccCceEEEEeecC--Cccccccceeec-cceEEEEEeccceeEEEChHHhhhhccc
Confidence 667788777666545667889999996 66665543 322222222222 333433 34566777888776 445566
Q ss_pred EEecc
Q 037087 350 GITGL 354 (370)
Q Consensus 350 ~~~~~ 354 (370)
.++|.
T Consensus 128 ~y~Ge 132 (262)
T COG3823 128 SYEGE 132 (262)
T ss_pred ccCCc
Confidence 66543
No 134
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=22.40 E-value=7.4e+02 Score=24.23 Aligned_cols=27 Identities=7% Similarity=0.269 Sum_probs=21.8
Q ss_pred cceEEccEEEEEEeCCCCccEEEEEECCCcc
Q 037087 219 DDVYLNGFCYWVVHRPDYYKEILKFSMTDEV 249 (370)
Q Consensus 219 ~~v~~~G~lywl~~~~~~~~~il~fD~~~~~ 249 (370)
+++..+|.+|.....+ .+.++|..+.+
T Consensus 56 sPvv~~g~vy~~~~~g----~l~AlD~~tG~ 82 (488)
T cd00216 56 TPLVVDGDMYFTTSHS----ALFALDAATGK 82 (488)
T ss_pred CCEEECCEEEEeCCCC----cEEEEECCCCh
Confidence 3789999999876665 69999998754
No 135
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=21.60 E-value=6.5e+02 Score=23.26 Aligned_cols=96 Identities=9% Similarity=0.065 Sum_probs=0.0
Q ss_pred ccCCcceEEccEEEEEEeCCCCccEEEEEECCCcceeEe-CCCCCCCccccccccCCCceEEEECCeEEEEEec------
Q 037087 215 FEGADDVYLNGFCYWVVHRPDYYKEILKFSMTDEVFQVI-QGPNIPQLLNYYESAMRPWMLGIYDDYLSILYSE------ 287 (370)
Q Consensus 215 ~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~~~~~~~~~l~~~~g~L~~~~~~------ 287 (370)
.+..++-..+|.+|.+..... .+..+|.+++++..+ .+|-.... |+-. |.+.++...
T Consensus 203 smPhSPRWhdgrLwvldsgtG---ev~~vD~~~G~~e~Va~vpG~~rG------------L~f~-G~llvVgmSk~R~~~ 266 (335)
T TIGR03032 203 SMPHSPRWYQGKLWLLNSGRG---ELGYVDPQAGKFQPVAFLPGFTRG------------LAFA-GDFAFVGLSKLRESR 266 (335)
T ss_pred cCCcCCcEeCCeEEEEECCCC---EEEEEcCCCCcEEEEEECCCCCcc------------ccee-CCEEEEEeccccCCC
Q ss_pred ----------CCCceEEEEEecC-----CceeE-------EEEecCCcceeeeeEEeeCCe
Q 037087 288 ----------EMAHSFDLWIMKG-----RSWTK-------QFTFGPFIETYQPLTFWRKGE 326 (370)
Q Consensus 288 ----------~~~~~l~IW~l~~-----~~W~~-------~~~i~~~~~~~~~~~~~~~~~ 326 (370)
-....-.||+.+= -.|.+ ++.+..++++.+|..+.-+.+
T Consensus 267 ~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~r~P~~lg~~~~ 327 (335)
T TIGR03032 267 VFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGVRRPEALGPDDD 327 (335)
T ss_pred CcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCCCCccccCCCcH
No 136
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=21.56 E-value=3.1e+02 Score=26.88 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=37.8
Q ss_pred CCCceEEEEEecC----CceeEEEEecCCcceeeeeEEeeCCeE-EEE-eCCCeEEEEECCCCcEE
Q 037087 288 EMAHSFDLWIMKG----RSWTKQFTFGPFIETYQPLTFWRKGEF-LLQ-SSDKRLVLYDSTYEEMR 347 (370)
Q Consensus 288 ~~~~~l~IW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~~~l-l~~-~~~~~~~~yd~~~~~~~ 347 (370)
.+.+.+.+|-.+. ..|.+.|.-+. +.+++....+. ++. .-+.+++.||...++..
T Consensus 184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~-----~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 184 SDKGAVTLWDVQGMSPIFHASEAHSAPC-----RGICFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred ccCCeEEEEeccCCCcccchhhhccCCc-----CcceecCCccceEEEecccceEEEeeccccccc
Confidence 4678899999887 77888886432 33555554444 443 55778999999876543
No 137
>PF10902 DUF2693: Protein of unknown function (DUF2693); InterPro: IPR024401 This family of proteins is found in bacteria and bacteriophages. Its function is unknown.
Probab=21.28 E-value=1.2e+02 Score=21.71 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=18.2
Q ss_pred CCeEEEEECCCCcEEEEEEecc
Q 037087 333 DKRLVLYDSTYEEMRDLGITGL 354 (370)
Q Consensus 333 ~~~~~~yd~~~~~~~~v~~~~~ 354 (370)
...+.+||++.+.|+...++..
T Consensus 48 ~~s~~yfDve~~~WRSFk~dnL 69 (83)
T PF10902_consen 48 TTSVRYFDVEKKGWRSFKIDNL 69 (83)
T ss_pred cceEEEEEeccCceeeeeheeE
Confidence 3569999999999999987653
No 138
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=21.27 E-value=5.6e+02 Score=25.57 Aligned_cols=112 Identities=11% Similarity=0.210 Sum_probs=60.9
Q ss_pred eecceEEEccCC--CeeEEEecccccccccCCCccCCCCCcccccceEEEeecCCCCceEEEEEEEEeecCCcCCCCCCC
Q 037087 112 PYDGIFLLLGDH--THINLWNVSMDEYRVVPRYKVRLPCDTRAHSSYYGLGVDPVANDFKLVLVLTLWDENRQWTYDEFS 189 (370)
Q Consensus 112 s~nGLl~~~~~~--~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 189 (370)
..+|-+|....+ ++ .||||..+ +.+-.... ......+..-|-|.+++=.|+.- ....
T Consensus 59 n~dG~lL~SGSDD~r~-ivWd~~~~--KllhsI~T------gHtaNIFsvKFvP~tnnriv~sg------------AgDk 117 (758)
T KOG1310|consen 59 NADGELLASGSDDTRL-IVWDPFEY--KLLHSIST------GHTANIFSVKFVPYTNNRIVLSG------------AGDK 117 (758)
T ss_pred cCCCCEEeecCCcceE-Eeecchhc--ceeeeeec------ccccceeEEeeeccCCCeEEEec------------cCcc
Confidence 567888877543 67 99999943 43333322 22344566667777776555533 2356
Q ss_pred cEEEEEcCCCceec-CCCCCCCcc-ccccCC---c-ceEEcc-EEEEEEeCCCCccEEEEEECCC
Q 037087 190 PAAVYNFTTNCWRD-LGGFPMSRH-YRFEGA---D-DVYLNG-FCYWVVHRPDYYKEILKFSMTD 247 (370)
Q Consensus 190 ~~~vyss~t~~W~~-~~~~~~~~~-~~~~~~---~-~v~~~G-~lywl~~~~~~~~~il~fD~~~ 247 (370)
.+.+|++..-+=+. ......+.. |..... . ++.-+| ..+|.+..++ .|.-+|+..
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG---tirQyDiRE 179 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG---TIRQYDIRE 179 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc---ceeeecccC
Confidence 77888776422111 111111110 000111 1 445556 7899888875 688888764
No 139
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=21.19 E-value=4.9e+02 Score=21.71 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=31.6
Q ss_pred CCceEEEEEecCCceeEEEEecCCcceeeeeEEeeCCeEEEEeC-CCeEEEEECCCCc
Q 037087 289 MAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQSS-DKRLVLYDSTYEE 345 (370)
Q Consensus 289 ~~~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~yd~~~~~ 345 (370)
....+.||.++...-..... .......-+.+..++.+++... ++.+.+||+++++
T Consensus 71 ~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 126 (289)
T cd00200 71 SDKTIRLWDLETGECVRTLT--GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK 126 (289)
T ss_pred CCCeEEEEEcCcccceEEEe--ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE
Confidence 45788999888632222221 1111122234444566766655 8889999998554
No 140
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.05 E-value=6.9e+02 Score=26.69 Aligned_cols=81 Identities=19% Similarity=0.362 Sum_probs=47.5
Q ss_pred EECCeEEEEEecCCCceEEEEEecC-CceeEEEEecCCcceeeeeEEeeCCeEEEE-eCCCeEEEEECCCCc-EEEEEEe
Q 037087 276 IYDDYLSILYSEEMAHSFDLWIMKG-RSWTKQFTFGPFIETYQPLTFWRKGEFLLQ-SSDKRLVLYDSTYEE-MRDLGIT 352 (370)
Q Consensus 276 ~~~g~L~~~~~~~~~~~l~IW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~yd~~~~~-~~~v~~~ 352 (370)
..++.|=++..-.+.+.+.+|.|.+ ..|..--.=+... ...-+-++.+-++++. .+++.+-+||++.++ ++..+-+
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre 291 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE 291 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeecc
Confidence 3444443333334778999999999 8898632212111 2223334445566665 677889999998765 4444444
Q ss_pred cceee
Q 037087 353 GLWFS 357 (370)
Q Consensus 353 ~~~~~ 357 (370)
+.++|
T Consensus 292 ndRFW 296 (1202)
T KOG0292|consen 292 NDRFW 296 (1202)
T ss_pred CCeEE
Confidence 44444
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=20.89 E-value=8e+02 Score=25.00 Aligned_cols=66 Identities=9% Similarity=0.177 Sum_probs=43.8
Q ss_pred CCceEEEEEecCCceeEEEEecC-CcceeeeeEEeeCCeEEEEeCCCeEEEEECCCCc-EEEEEEecce
Q 037087 289 MAHSFDLWIMKGRSWTKQFTFGP-FIETYQPLTFWRKGEFLLQSSDKRLVLYDSTYEE-MRDLGITGLW 355 (370)
Q Consensus 289 ~~~~l~IW~l~~~~W~~~~~i~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~yd~~~~~-~~~v~~~~~~ 355 (370)
..+.++||-+. ..|-+...|.. .+.-...++-.++++++=..-++.+.-||+-+.+ ...+...|..
T Consensus 45 t~g~IEiwN~~-~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~ 112 (691)
T KOG2048|consen 45 TDGNIEIWNLS-NNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGA 112 (691)
T ss_pred cCCcEEEEccC-CCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcc
Confidence 55899999999 57888777642 2222333444467787777788899999998754 4444444443
No 142
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=20.81 E-value=1.1e+03 Score=25.81 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=43.2
Q ss_pred EECCeEEEEEecCCCceEEEEEecCCceeEEEEecC---------Ccceeee--eEEeeCCeEEEE-eCCCeEEEEECCC
Q 037087 276 IYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGP---------FIETYQP--LTFWRKGEFLLQ-SSDKRLVLYDSTY 343 (370)
Q Consensus 276 ~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~---------~~~~~~~--~~~~~~~~ll~~-~~~~~~~~yd~~~ 343 (370)
.-+|.|+++.. ....+.+|-.+............ ...+..| +++..+|.+++. ..++.+.++|+++
T Consensus 812 d~dG~LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 812 AKDGQIYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred eCCCcEEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 34678888776 67889888877533222221110 0012234 566678888887 4567899999999
Q ss_pred CcE
Q 037087 344 EEM 346 (370)
Q Consensus 344 ~~~ 346 (370)
++.
T Consensus 890 ~~~ 892 (1057)
T PLN02919 890 GEA 892 (1057)
T ss_pred Ccc
Confidence 865
No 143
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=20.50 E-value=1.6e+02 Score=28.81 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=41.5
Q ss_pred EECCeEEEEEecCCCceEEEEEecCCceeEEEEecCCcceeeeeEEeeCCeEEEE-eCCCeEEEEECCCCcEE
Q 037087 276 IYDDYLSILYSEEMAHSFDLWIMKGRSWTKQFTFGPFIETYQPLTFWRKGEFLLQ-SSDKRLVLYDSTYEEMR 347 (370)
Q Consensus 276 ~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~yd~~~~~~~ 347 (370)
.-+|+--++.. +..++.||-|-..+=..+..+.........+++..+.++.|. ..++.+.+||+.++.+.
T Consensus 474 ~pdgrtLivGG--eastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 474 LPDGRTLIVGG--EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred cCCCceEEecc--ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 34566555555 678999999987211111112111112234555667777775 67888999999877653
No 144
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=20.16 E-value=8.5e+02 Score=24.06 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=32.0
Q ss_pred CceeEEEEecCC---cceeeeeEEee-CCeEEEEeCCCeEEEEECCCCcE-EEEEEecc
Q 037087 301 RSWTKQFTFGPF---IETYQPLTFWR-KGEFLLQSSDKRLVLYDSTYEEM-RDLGITGL 354 (370)
Q Consensus 301 ~~W~~~~~i~~~---~~~~~~~~~~~-~~~ll~~~~~~~~~~yd~~~~~~-~~v~~~~~ 354 (370)
..|.+.....+- .+......+.. +..+++....+++++|+++++.+ |+..+-+.
T Consensus 185 WdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek 243 (626)
T KOG2106|consen 185 WDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEK 243 (626)
T ss_pred hhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccc
Confidence 347776665432 22222233333 55677777788899999998875 45555433
Done!