BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037089
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z6D|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
pdb|2Z6D|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
Length = 130
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 44/53 (83%), Positives = 51/53 (96%)
Query: 158 FPRVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
FPRVS+ELK AL+TLQQTFVVSDAT+P CPI+YASSGFF+MTGYSSKE++GRN
Sbjct: 1 FPRVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRN 53
>pdb|2Z6C|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
pdb|2Z6C|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
Length = 129
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 49/54 (90%)
Query: 157 AFPRVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
PRVSE+LK AL+T QQTFVVSDATKPD PIMYAS+GFF+MTGY+SKEV+GRN
Sbjct: 1 GIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRN 54
>pdb|1N9L|A Chain A, Crystal Structure Of The Phot-lov1 Domain From
Chlamydomonas Reinhardtii In The Dark State.
pdb|1N9N|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State. Data Set
Of A Single Crystal.
pdb|1N9O|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State.
Composite Data Set
Length = 109
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 172 LQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
L+ TFVV+DAT PDCP++YAS GF++MTGY EV+G N
Sbjct: 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHN 40
>pdb|3UE6|A Chain A, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|B Chain B, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|C Chain C, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|D Chain D, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|E Chain E, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|F Chain F, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 166
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 165 LKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
L AL QQ FV++DA+ PD PI+YAS GF ++TGYS +++GRN
Sbjct: 37 LVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRN 82
>pdb|3ULF|A Chain A, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|B Chain B, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|C Chain C, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|D Chain D, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|E Chain E, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|F Chain F, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 170
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 165 LKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
L AL QQ FV++DA+ PD PI+YAS GF ++TGYS +++GRN
Sbjct: 41 LVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRN 86
>pdb|2V0U|A Chain A, N- And C-terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-induced Signal Transduction (cryo Dark
Structure Of Lov2 (404-546))
pdb|2V0W|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Cryo-
Trapped Light Structure Of Lov2 (404-546))
Length = 146
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 163 EELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
E L L +++ FV++D PD PI++AS F +T YS +E++GRN
Sbjct: 2 EFLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRN 49
>pdb|4EES|A Chain A, Crystal Structure Of Ilov
pdb|4EET|B Chain B, Crystal Structure Of Ilov
pdb|4EET|D Chain D, Crystal Structure Of Ilov
Length = 115
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 172 LQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
+++ FV++D PD PI++AS GF +T YS +E++GRN
Sbjct: 6 IEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRN 44
>pdb|2V1A|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Dark Structure Of Lov2 (404-546))
pdb|2V1B|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Light Structure Of Lov2 (404-546))
Length = 144
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 165 LKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
L L +++ FV++D PD PI++AS F +T YS +E++GRN
Sbjct: 2 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRN 47
>pdb|4EEU|A Chain A, Crystal Structure Of Philov2.1
Length = 118
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 30/39 (76%)
Query: 172 LQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
++++FV++D PD PI++AS GF +T YS +E++GRN
Sbjct: 9 IEKSFVITDPRLPDYPIIFASDGFLELTEYSREEIMGRN 47
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 165 LKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
L L +++ FV++D PD PI++AS F +T YS +E++GRN
Sbjct: 13 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRN 58
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 165 LKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
L L +++ FV++D PD PI++AS F +T YS +E++GRN
Sbjct: 13 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRN 58
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 165 LKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
L L +++ FV++D PD PI++AS F +T YS +E++GRN
Sbjct: 13 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRN 58
>pdb|4EER|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2 C426a Mutant
Length = 115
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 172 LQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
+++ FV+SD PD PI++AS F +T YS +E++GRN
Sbjct: 6 IEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRN 44
>pdb|4EEP|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2
Length = 115
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 172 LQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
+++ FV+SD PD PI++AS F +T YS +E++GRN
Sbjct: 6 IEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRN 44
>pdb|3HJK|A Chain A, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
(Vvd).
pdb|3HJK|B Chain B, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
(Vvd)
Length = 154
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 176 FVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211
V+ D + D PI+YAS F MTGYS+ EV+GRN
Sbjct: 41 LVLCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNC 76
>pdb|3IS2|A Chain A, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
Form Of Vivid
Length = 154
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 176 FVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211
++ D + D PI+YAS F MTGYS+ EV+GRN
Sbjct: 41 LILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNC 76
>pdb|3IS2|B Chain B, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
Form Of Vivid
Length = 154
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 176 FVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211
++ D + D PI+YAS F MTGYS+ EV+GRN
Sbjct: 41 LILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNC 76
>pdb|3D72|A Chain A, 1.65 Angstrom Crystal Structure Of The Cys71val Variant In
The Fungal Photoreceptor Vvd
pdb|3D72|B Chain B, 1.65 Angstrom Crystal Structure Of The Cys71val Variant In
The Fungal Photoreceptor Vvd
Length = 149
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 176 FVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211
++ D + D PI+YAS F MTGYS+ EV+GRN
Sbjct: 38 LILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNC 73
>pdb|2PD8|A Chain A, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
Vivid
pdb|2PD8|B Chain B, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
Vivid
Length = 149
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 176 FVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211
++ D + D PI+YAS F MTGYS+ EV+GRN
Sbjct: 38 LILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNC 73
>pdb|3RH8|B Chain B, Crystal Structure Of The Light-State Dimer Of Fungal
Blue-Light Photoreceptor Vivid
pdb|3RH8|D Chain D, Crystal Structure Of The Light-State Dimer Of Fungal
Blue-Light Photoreceptor Vivid
Length = 148
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 176 FVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211
++ D + D PI+YAS F MTGYS+ EV+GRN
Sbjct: 37 LILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNC 72
>pdb|2PD7|A Chain A, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
Photoreceptor Vivid
pdb|2PD7|B Chain B, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
Photoreceptor Vivid
pdb|2PDR|A Chain A, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|B Chain B, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|C Chain C, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|D Chain D, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDT|A Chain A, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|B Chain B, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|C Chain C, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|D Chain D, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
Length = 149
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 176 FVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211
++ D + D PI+YAS F MTGYS+ EV+GRN
Sbjct: 38 LILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNC 73
>pdb|3HJI|A Chain A, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant Of
Vivid (Vvd).
pdb|3HJI|B Chain B, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant Of
Vivid (Vvd)
Length = 154
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 176 FVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211
V+ D + D P++YAS F MTGYS+ EV+GRN
Sbjct: 41 LVLCDLKQKDTPVVYASEAFLYMTGYSNAEVLGRNC 76
>pdb|2PR5|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
pdb|2PR5|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
pdb|2PR6|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
pdb|2PR6|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
Length = 132
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 177 VVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
V++D D PI+Y + GF MTGY ++E++G+N
Sbjct: 13 VITDPALEDNPIVYVNQGFVQMTGYETEEILGKN 46
>pdb|1G28|A Chain A, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|B Chain B, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|C Chain C, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|D Chain D, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1JNU|A Chain A, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|B Chain B, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|C Chain C, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|D Chain D, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
Length = 104
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 174 QTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
++FV++D PD PI++AS F +T Y+ +EV+G N
Sbjct: 1 KSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNN 37
>pdb|3T50|A Chain A, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory
Protein From Brucella Abortus (Dark State).
pdb|3T50|B Chain B, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory
Protein From Brucella Abortus (Dark State)
Length = 128
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 176 FVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
++++ PD PI++A+ F +TGY + EV+GRN
Sbjct: 10 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRN 44
>pdb|2L1M|A Chain A, Solution Structure Of The Eag Domain Of The Herg (Kv11.1)
K+ Channel
Length = 150
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 176 FVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGR 209
F++++A +C ++Y + GF + GYS EV+ R
Sbjct: 29 FIIANARVENCAVIYCNDGFCELCGYSRAEVMQR 62
>pdb|2L4R|A Chain A, Nmr Solution Structure Of The N-Terminal Pas Domain Of
Herg
Length = 135
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 174 QTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGR 209
+ F++++A +C ++Y + GF + GYS EV+ R
Sbjct: 27 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQR 62
>pdb|2L0W|A Chain A, Solution Nmr Structure Of The N-Terminal Pas Domain Of
Herg Potassium Channel
Length = 138
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 174 QTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGR 209
+ F++++A +C ++Y + GF + GYS EV+ R
Sbjct: 30 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQR 65
>pdb|1BYW|A Chain A, Structure Of The N-Terminal Domain Of The Human-Erg
Potassium Channel
Length = 110
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 174 QTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGR 209
+ F++++A +C ++Y + GF + GYS EV+ R
Sbjct: 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQR 37
>pdb|3P7N|A Chain A, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
pdb|3P7N|B Chain B, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
Length = 258
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 177 VVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
VVSD D P++ + F +TGYS +E +GRN
Sbjct: 77 VVSDPRLADNPLIAINQAFTDLTGYSEEECVGRN 110
>pdb|4HIA|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HIA|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 176
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 163 EELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
E+++A + D + P+ P++ A+ F MTGY+ +++G N
Sbjct: 7 EKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFN 54
>pdb|2GJ3|A Chain A, Crystal Structure Of The Fad-Containing Pas Domain Of The
Protein Nifl From Azotobacter Vinelandii.
pdb|2GJ3|B Chain B, Crystal Structure Of The Fad-Containing Pas Domain Of The
Protein Nifl From Azotobacter Vinelandii
Length = 120
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 171 TLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
T++ + T I+YA+ F ++TGY S+EV+G+N
Sbjct: 10 TVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKN 49
>pdb|4HJ6|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ6|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 178
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 163 EELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
E+++A + D + P+ P++ A+ F MTGY+ +++G N
Sbjct: 9 EKIRAVFDRSGVALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFN 56
>pdb|4HJ4|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ4|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HNB|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HNB|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 177
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 163 EELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
E+++A + D + P+ P++ A+ F MTGY+ +++G N
Sbjct: 8 EKIRAVFDRSGVALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFN 55
>pdb|4HJ3|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ3|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 176
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 163 EELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210
E+++A + D + P+ P++ A+ F MTGY+ +++G N
Sbjct: 7 EKIRAVFDRSGVALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFN 54
>pdb|3SZE|A Chain A, Crystal Structure Of The Passenger Domain Of The E. Coli
Autotransporter Espp
Length = 968
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 16/132 (12%)
Query: 17 QQRPIEVFQPKASHDI---GQSSGTNEDLHTQALKAFTTTSTNKWMAFEGESGSYPKIKV 73
Q I+ + K S+++ G T E+ + TT NK + F G K
Sbjct: 247 NQTTIDNLKNKYSYNVDMSGAQVATIENGKLTGTGSDTTDIKNKDLIFTGGGDILLKSSF 306
Query: 74 SDESNGRFFNEKKAVDV---DRIFTGANIAER---TAEWGLVV--KSDV--LGEGTF--- 120
+ + G FN+KK V D F GA + R T EW + K ++ +G+GT
Sbjct: 307 DNGAGGLVFNDKKTYRVNGDDFTFKGAGVDTRNGSTVEWNIRYDNKDNLHKIGDGTLDVR 366
Query: 121 KAVNLRKPSGDG 132
K N +G+G
Sbjct: 367 KTQNTNLKTGEG 378
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 38 TNEDLHTQALKAFTTTSTNKWMAFEGESGSYPK-IKVSDESNGRFFNEKKAVDVDRIFTG 96
TN+D + TT +T+K + +GES + K +G F K+ V + +G
Sbjct: 108 TNDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSG 167
Query: 97 ANIAERTAEW 106
A A +E+
Sbjct: 168 AIAAISMSEY 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.126 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,245,397
Number of Sequences: 62578
Number of extensions: 251169
Number of successful extensions: 408
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 39
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)