Query 037089
Match_columns 211
No_of_seqs 189 out of 1031
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 14:18:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r78_A Sensor protein; sensory 98.9 2.7E-09 9.3E-14 76.6 6.3 50 158-210 6-55 (117)
2 2gj3_A Nitrogen fixation regul 98.9 2.9E-09 9.9E-14 75.8 5.5 45 163-210 5-49 (120)
3 1n9l_A PHOT-LOV1, putative blu 98.8 5.7E-09 2E-13 74.2 4.2 40 172-211 2-41 (109)
4 1d06_A Nitrogen fixation regul 98.7 3.3E-09 1.1E-13 76.5 2.8 47 162-211 15-61 (130)
5 2pr5_A Blue-light photorecepto 98.7 9.8E-09 3.3E-13 74.2 4.1 45 167-211 3-47 (132)
6 3olo_A Two-component sensor hi 98.7 2.4E-08 8.3E-13 68.4 5.7 50 158-210 8-57 (118)
7 3bwl_A Sensor protein; structu 98.6 5.9E-08 2E-12 68.4 5.8 48 158-208 12-59 (126)
8 3mfx_A Sensory BOX/ggdef famil 98.5 1.1E-07 3.8E-12 72.2 4.9 45 163-210 7-51 (129)
9 3luq_A Sensor protein; PAS, hi 98.5 1.6E-07 5.6E-12 63.4 5.2 45 163-210 3-47 (114)
10 3ewk_A Sensor protein; PAS dom 98.5 2.1E-07 7.3E-12 74.2 5.9 52 156-210 104-155 (227)
11 3p7n_A Sensor histidine kinase 98.4 2.2E-07 7.4E-12 75.2 5.8 54 158-211 58-111 (258)
12 4hi4_A Aerotaxis transducer AE 98.4 2.6E-07 8.8E-12 66.7 5.0 46 162-210 4-61 (121)
13 3ue6_A Aureochrome1; PAS/LOV d 98.4 3.5E-07 1.2E-11 66.6 5.5 49 162-210 34-82 (166)
14 4eet_B Phototropin-2; LOV, blu 98.4 2.5E-07 8.4E-12 62.4 4.3 43 168-210 2-44 (115)
15 3fc7_A HTR-like protein, senso 98.4 1.5E-07 5E-12 65.3 3.2 47 161-210 17-63 (125)
16 2z6d_A Phototropin-2; PAS-fold 98.4 4E-07 1.4E-11 60.9 4.5 51 160-210 3-53 (130)
17 3mqq_A Transcriptional regulat 98.3 2.8E-07 9.7E-12 64.9 3.8 42 165-210 5-46 (120)
18 3b33_A Sensor protein; structu 98.3 5.9E-07 2E-11 62.4 4.7 43 165-210 9-51 (115)
19 3mxq_A Sensor protein; PSI2, M 98.3 5.2E-07 1.8E-11 71.4 4.8 50 158-210 17-66 (152)
20 1ll8_A PAS kinase; PAS domain, 98.3 4.1E-07 1.4E-11 63.7 3.6 36 172-210 7-43 (114)
21 2w0n_A Sensor protein DCUS; si 98.3 5.8E-07 2E-11 61.2 3.8 51 158-211 10-63 (118)
22 3f1p_B ARYL hydrocarbon recept 98.2 4.2E-07 1.4E-11 64.1 2.4 42 166-210 5-46 (121)
23 3lyx_A Sensory BOX/ggdef domai 98.2 1.1E-06 3.9E-11 58.4 4.2 46 162-210 6-51 (124)
24 3t50_A Blue-light-activated hi 98.2 5.5E-07 1.9E-11 62.8 2.7 43 168-210 2-44 (128)
25 3vol_A Aerotaxis transducer AE 98.2 1.4E-06 4.7E-11 71.9 5.4 51 158-211 17-79 (233)
26 2l0w_A Potassium voltage-gated 98.2 2.2E-06 7.7E-11 58.5 5.1 49 162-210 18-66 (138)
27 3fg8_A Uncharacterized protein 98.2 5.6E-07 1.9E-11 64.4 2.0 42 166-210 15-56 (118)
28 1nwz_A PYP, photoactive yellow 98.1 9.6E-07 3.3E-11 69.8 3.1 43 166-211 20-62 (125)
29 1byw_A Protein (human ERG pota 98.1 2.3E-06 8E-11 55.7 4.2 37 174-210 2-38 (110)
30 2vlg_A Sporulation kinase A; h 98.1 1.3E-06 4.5E-11 64.9 3.2 41 167-210 3-43 (111)
31 3a0s_A Sensor protein; PAS-fol 98.1 2.1E-06 7E-11 55.1 3.7 35 173-210 2-36 (96)
32 2kdk_A ARYL hydrocarbon recept 98.1 1.2E-06 4.2E-11 61.1 2.2 41 167-210 7-47 (121)
33 3k3c_A Protein RV1364C/MT1410; 98.1 3.7E-06 1.2E-10 61.5 4.9 44 162-210 16-60 (158)
34 3d72_A Vivid PAS protein VVD; 98.1 1.4E-06 5E-11 62.8 2.6 43 168-211 31-73 (149)
35 3sw1_A Sensory box protein; li 98.1 2.7E-06 9.4E-11 61.8 3.9 49 162-210 24-72 (162)
36 1mzu_A PPR; photoactive yellow 98.1 9.5E-07 3.2E-11 70.5 1.4 43 166-211 25-67 (129)
37 3eeh_A Putative light and redo 98.0 2.4E-06 8.3E-11 57.3 2.8 51 158-210 6-56 (125)
38 1v9y_A Heme PAS sensor protein 98.0 5.1E-06 1.7E-10 59.8 4.4 47 161-210 38-84 (167)
39 3mjq_A Uncharacterized protein 98.0 1.4E-06 4.8E-11 59.9 1.2 41 167-210 3-43 (126)
40 3nja_A Probable ggdef family p 98.0 6.3E-06 2.2E-10 56.1 4.4 46 160-208 4-49 (125)
41 2jhe_A Transcription regulator 98.0 8.2E-06 2.8E-10 62.7 5.5 49 159-210 76-124 (190)
42 3kx0_X Uncharacterized protein 97.9 8.1E-06 2.8E-10 62.9 4.9 44 162-210 36-80 (185)
43 3f1p_A Endothelial PAS domain- 97.9 4.1E-06 1.4E-10 58.5 2.8 35 173-210 9-43 (117)
44 2v0u_A NPH1-1, LOV2; kinase, t 97.8 1.8E-05 6E-10 54.2 3.9 45 166-210 5-49 (146)
45 2qkp_A Uncharacterized protein 97.7 2.3E-05 7.7E-10 61.5 3.2 45 163-211 19-66 (151)
46 3icy_A Sensor protein; sensory 97.5 1.9E-05 6.5E-10 53.7 0.7 44 163-209 4-47 (118)
47 3mr0_A Sensory box histidine k 97.3 0.00022 7.5E-09 52.2 4.4 46 160-208 6-51 (142)
48 4f3l_A Mclock, circadian locom 97.0 0.00045 1.5E-08 60.8 4.2 43 165-210 88-130 (361)
49 3h9w_A Diguanylate cyclase wit 97.0 0.00054 1.9E-08 47.5 3.8 35 172-208 2-36 (115)
50 3cax_A Uncharacterized protein 96.9 0.00052 1.8E-08 61.0 4.0 46 161-211 237-282 (369)
51 4eho_A Bacteriophytochrome, PA 96.8 0.00082 2.8E-08 64.0 4.2 43 165-210 520-562 (635)
52 4f3l_B BMAL1B; BHLH, PAS, circ 96.5 0.0022 7.5E-08 57.3 4.6 43 166-210 89-131 (387)
53 4f3l_A Mclock, circadian locom 95.3 0.0063 2.1E-07 53.5 2.1 33 176-211 254-286 (361)
54 4f3l_B BMAL1B; BHLH, PAS, circ 95.1 0.011 3.6E-07 52.8 3.1 33 175-210 280-312 (387)
55 3rty_A Period circadian protei 94.6 0.015 5E-07 51.9 2.6 34 174-210 155-188 (339)
56 2ykf_A Pdtas, probable sensor 93.4 0.0071 2.4E-07 52.5 0.0 39 168-210 175-216 (305)
57 4dj3_A Period circadian protei 93.5 0.036 1.2E-06 49.0 2.8 26 185-210 183-208 (317)
58 4dj2_A Period circadian protei 93.2 0.042 1.4E-06 48.6 2.8 33 175-210 178-210 (320)
59 3gdi_A Period circadian protei 93.1 0.039 1.3E-06 48.5 2.4 32 176-210 168-199 (309)
60 4dj2_A Period circadian protei 92.8 0.078 2.7E-06 46.9 3.9 40 169-210 32-71 (320)
61 3gdi_A Period circadian protei 91.6 0.053 1.8E-06 47.7 1.3 40 169-210 21-60 (309)
62 4dj3_A Period circadian protei 90.5 0.11 3.8E-06 45.9 2.2 40 169-210 32-71 (317)
63 2ool_A Sensor protein; bacteri 72.7 3.1 0.00011 37.2 4.1 34 175-210 44-77 (337)
64 4ew7_A Conjugative transfer: r 70.6 6.1 0.00021 31.2 4.8 34 163-199 20-53 (127)
65 3clo_A Transcriptional regulat 42.3 15 0.00051 30.3 2.8 47 158-206 28-74 (258)
66 3pxp_A Helix-turn-helix domain 29.6 71 0.0024 27.8 5.1 40 158-200 94-133 (292)
67 3s7o_A Bacteriophytochrome; bi 25.9 42 0.0014 30.3 3.1 35 174-210 53-87 (343)
68 4e04_A Bacteriophytochrome (li 23.0 54 0.0018 29.3 3.2 34 174-210 30-63 (327)
No 1
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=98.89 E-value=2.7e-09 Score=76.57 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=45.4
Q ss_pred chhhHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 158 FPRVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 158 l~rlsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
+....+.+..++++++++|+++|. ++.|+|||++|++|+||+.+|++|++
T Consensus 6 l~~se~~~~~l~e~~~d~i~~~d~---~g~i~~vN~a~~~l~Gy~~~el~g~~ 55 (117)
T 2r78_A 6 LYFQSNAYRALFEHAIDGIFIMDA---EGHYLDVNPAICSAIGYTRDEFLALD 55 (117)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCB
T ss_pred HHHhHHHHHHHHhcCCceEEEECC---CCCEEEecHHHHHHHCcCHHHHcCCC
Confidence 556667889999999999999998 67899999999999999999999985
No 2
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=98.86 E-value=2.9e-09 Score=75.82 Aligned_cols=45 Identities=31% Similarity=0.612 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 163 EELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 163 rlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
+.+..+++.++++|+++|. ++.|+|+|++|++|+||+.+|++|++
T Consensus 5 ~~~~~~~~~~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~elig~~ 49 (120)
T 2gj3_A 5 EIFRQTVEHAPIAISITDL---KANILYANRAFRTITGYGSEEVLGKN 49 (120)
T ss_dssp HHHHHHHHHCSSEEEEECT---TCBEEEECHHHHHHHCCCTTGGGGCB
T ss_pred HHHHHHHHhCCCeEEEECC---CCCEEeehHHHHHHHCcCHHHHcCCC
Confidence 5678899999999999998 67899999999999999999999985
No 3
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=98.76 E-value=5.7e-09 Score=74.20 Aligned_cols=40 Identities=63% Similarity=1.183 Sum_probs=36.1
Q ss_pred cCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCCC
Q 037089 172 LQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211 (211)
Q Consensus 172 s~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRNc 211 (211)
++++|+|+|...++++|+|+|++|++|+||+.+|++|++|
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~ 41 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNC 41 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCG
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCc
Confidence 5789999998656789999999999999999999999874
No 4
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=98.75 E-value=3.3e-09 Score=76.52 Aligned_cols=47 Identities=32% Similarity=0.458 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCCC
Q 037089 162 SEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211 (211)
Q Consensus 162 srlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRNc 211 (211)
..++..+++.++++|++.|. ++.|+|+|++|++|+||+.+|++|+++
T Consensus 15 ~~~~~~l~~~~~d~i~~~d~---~g~i~~~N~a~~~l~Gy~~~eliG~~~ 61 (130)
T 1d06_A 15 DAHLRSILDTVPDATVVSAT---DGTIVSFNAAAVRQFGYAEEEVIGQNL 61 (130)
T ss_dssp TSCHHHHHTTCSSEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBG
T ss_pred HHHHHHHHhhCcCeEEEECC---CCeEEEEcHHHHHHHCCCHHHHcCCcH
Confidence 34577899999999999998 678999999999999999999999863
No 5
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=98.70 E-value=9.8e-09 Score=74.19 Aligned_cols=45 Identities=36% Similarity=0.729 Sum_probs=37.7
Q ss_pred HHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCCC
Q 037089 167 AALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211 (211)
Q Consensus 167 ~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRNc 211 (211)
.+++.++++|+++|..+.++.|+|+|++|++|+||+.+|++|+++
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~ 47 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNC 47 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCG
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCCh
Confidence 468889999999998554568999999999999999999999864
No 6
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=98.69 E-value=2.4e-08 Score=68.41 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=44.5
Q ss_pred chhhHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 158 FPRVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 158 l~rlsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
++...+.+..+++.++++|++.|. ++.|+|+|++|++|+||+.+|++|++
T Consensus 8 ~e~~~~~~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~l~G~~~~el~g~~ 57 (118)
T 3olo_A 8 SELEFKFAHYLINNAVEASFCLGD---NWQFLYVNDATCRMTEYSREQLLSMN 57 (118)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCB
T ss_pred HHHHHHHHHHHHhcCCceEEEECC---CCcEEEEHHHHHHHHCCCHHHHhCCC
Confidence 445556788899999999999998 67899999999999999999999975
No 7
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=98.61 E-value=5.9e-08 Score=68.36 Aligned_cols=48 Identities=29% Similarity=0.398 Sum_probs=42.4
Q ss_pred chhhHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccC
Q 037089 158 FPRVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIG 208 (211)
Q Consensus 158 l~rlsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIG 208 (211)
+....+.+..+++.++++|++.|. ++.|+|+|++|++|+||+.+|++|
T Consensus 12 L~~~~~~~~~l~e~~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~el~g 59 (126)
T 3bwl_A 12 LEETSSRLEALFENSPDMIDVLDA---DGTICEVNQRFCAELGYDESEVLG 59 (126)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECT---TCBEEEECHHHHHHHTCCGGGTTT
T ss_pred HHHHHHHHHHHHhhCCcEEEEEcC---CCCEEEEcHHHHHHhCCCHHHHhh
Confidence 455556788999999999999998 678999999999999999999954
No 8
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.49 E-value=1.1e-07 Score=72.17 Aligned_cols=45 Identities=11% Similarity=0.190 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 163 EELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 163 rlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
..+..+++.+.++|++.|. ++.|+|+|++|++|+||+.+|++|++
T Consensus 7 ~~l~~i~~~~~d~i~~~D~---~g~I~~~N~aa~~l~G~~~~el~G~~ 51 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNA---NGFIRSCNQRSAELLDCPQVSLKGQD 51 (129)
T ss_dssp HHHHHHHTTCSSEEEEEET---TSBEEEECHHHHHHTTSCHHHHTTSB
T ss_pred HHHHHHHhcCCceEEEECC---CCEEEeEhHHHHHHHCcCHHHHcCCc
Confidence 5688899999999999999 67899999999999999999999986
No 9
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=98.49 E-value=1.6e-07 Score=63.36 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 163 EELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 163 rlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
+.+..++++++++|++.|. ++.|+|+|++|++|+||+.++++|++
T Consensus 3 ~~~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~ 47 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDR---EMRYLAVSRRWREDYGLGDGDILGMS 47 (114)
T ss_dssp HHHHHHHHTCSSEEEEEET---TCBEEEECHHHHHHTTCCSSCCTTCB
T ss_pred HHHHHHHhcCCceEEEEcC---CcEEEEECHHHHHHHCCCHHHHcCCc
Confidence 4578899999999999998 67899999999999999999999985
No 10
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=98.45 E-value=2.1e-07 Score=74.24 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=45.9
Q ss_pred CCchhhHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 156 GAFPRVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 156 ~al~rlsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
...+...+.+..+++..+++|+++|. ++.|+|+|++|++|+||+.+|++|++
T Consensus 104 k~~e~~l~~~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~e~~g~~ 155 (227)
T 3ewk_A 104 KEAEAQLARLKQAMDANSEMILLTDR---AGRIIYANPALCRFSGMAEGELLGQS 155 (227)
T ss_dssp THHHHHHHHHHHHHHTCCSEEEEECT---TSCEEEECHHHHHHHTCCTHHHHSSC
T ss_pred HHHHHHHHHHHHHHhcCcCeEEEEcC---CCcEEEEchHHHHHhCCCHHHHcCCC
Confidence 33555567788899999999999998 67899999999999999999999986
No 11
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=98.44 E-value=2.2e-07 Score=75.17 Aligned_cols=54 Identities=28% Similarity=0.413 Sum_probs=45.1
Q ss_pred chhhHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCCC
Q 037089 158 FPRVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211 (211)
Q Consensus 158 l~rlsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRNc 211 (211)
+....+.+..+++.++++|+++|....++.|+|+|++|++|+||+.+|++|+++
T Consensus 58 l~~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~ 111 (258)
T 3p7n_A 58 VQPPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNC 111 (258)
T ss_dssp ---CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCG
T ss_pred HHhHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCCh
Confidence 444556789999999999999999544567999999999999999999999863
No 12
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.42 E-value=2.6e-07 Score=66.69 Aligned_cols=46 Identities=22% Similarity=0.468 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhC------------CCcccccCCC
Q 037089 162 SEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTG------------YSSKEVIGRN 210 (211)
Q Consensus 162 srlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTG------------YS~eELIGRN 210 (211)
..++..+|++++++|+++|. ++.|+|+|++|++|+| |+.++++|++
T Consensus 4 ~~rl~~il~~~~~gviv~D~---~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~ 61 (121)
T 4hi4_A 4 MARIASALDNVSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGAN 61 (121)
T ss_dssp HHHHHHHHTTSSSEEEEEET---TCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCB
T ss_pred HHHHHHHHhcCCccEEEEcC---CCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCC
Confidence 35688999999999999999 6789999999999985 9999999985
No 13
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=98.40 E-value=3.5e-07 Score=66.60 Aligned_cols=49 Identities=51% Similarity=0.868 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 162 SEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 162 srlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
...+..+++.++++|++.|...+++.|+|+|++|++|+||+.++++|++
T Consensus 34 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~ 82 (166)
T 3ue6_A 34 DYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRN 82 (166)
T ss_dssp CCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSC
T ss_pred HHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCC
Confidence 3557889999999999999843457899999999999999999999986
No 14
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=98.40 E-value=2.5e-07 Score=62.35 Aligned_cols=43 Identities=42% Similarity=0.864 Sum_probs=36.0
Q ss_pred HHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 168 ALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 168 aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
+++.++++|++.|...+++.|+|+|++|++|+||+.++++|++
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~ 44 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRN 44 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSC
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCC
Confidence 4678899999999854456799999999999999999999986
No 15
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.40 E-value=1.5e-07 Score=65.31 Aligned_cols=47 Identities=9% Similarity=0.213 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 161 VSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 161 lsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
..+.+..+++.++++|++.|. ++.|+|+|++|++|+||+.++++|++
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~ 63 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTT---NGTILSVNPSMAGRLGADPDTLVGQQ 63 (125)
T ss_dssp ---------CCSCCEEEEEET---TSBEEEECHHHHHHHTSCHHHHTTSB
T ss_pred HHHHHHHHHhcCCCeEEEEcC---CCeEEEECHHHHHHhCCCHHHHcCcc
Confidence 445678899999999999998 67899999999999999999999986
No 16
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=98.36 E-value=4e-07 Score=60.92 Aligned_cols=51 Identities=82% Similarity=1.276 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 160 RVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 160 rlsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
+..+.+..+++.++++|++.|....++.|+|+|++|++|+||+.++++|++
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~ 53 (130)
T 2z6d_A 3 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRN 53 (130)
T ss_dssp ----CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSC
T ss_pred hHHHHHHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCC
Confidence 344567889999999999999322267899999999999999999999975
No 17
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=98.35 E-value=2.8e-07 Score=64.95 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=37.3
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 165 LKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 165 L~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
+..++++++.+|++ |. ++.|+|+|++|++|+||+.+|++|+.
T Consensus 5 ~~~~~~~~~~~i~~-~~---~g~i~~~N~a~~~l~G~~~~el~g~~ 46 (120)
T 3mqq_A 5 YKTAFHLAPIGLVL-SR---DRVIEDCNDELAAIFRCARADLIGRS 46 (120)
T ss_dssp HHHHHHHCSSEEEE-EE---TTEEEEECHHHHHHTTSCHHHHTTCB
T ss_pred HHHHHhcCCceEEE-ec---CCEEHHHHHHHHHHhCcCHHHhCCCc
Confidence 56789999999976 54 56799999999999999999999985
No 18
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.32 E-value=5.9e-07 Score=62.43 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=39.4
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 165 LKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 165 L~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
...+++.++++|++.|. ++.|+|+|+++++|+||+.++++|++
T Consensus 9 ~~~il~~~~~~i~~~D~---~g~I~~~N~aa~~l~g~~~~~~~g~~ 51 (115)
T 3b33_A 9 PSAILNNMVTATLILDD---GLAIRYANPAAELLFSQSAKRIVEQS 51 (115)
T ss_dssp HHHHHHHCSSEEEEECT---TCBEEEECHHHHHHTTSCHHHHTTCB
T ss_pred HHHHHhhcCceEEEECC---CCcEEEECHHHHHHhCCCHHHHhCCC
Confidence 45689999999999999 67899999999999999999999985
No 19
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=98.31 E-value=5.2e-07 Score=71.39 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=45.0
Q ss_pred chhhHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 158 FPRVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 158 l~rlsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
++....+|..++++++++|+|.|. ++.|+++|+++++++||+.+|++|++
T Consensus 17 ~~~~~~~l~~il~~~~~gi~v~D~---~g~I~~~N~a~~~~~G~~~~eviG~~ 66 (152)
T 3mxq_A 17 MAKSRLLLSELLDQLSFALCIVRN---DYVIVKVNEYFESRVIFDGETMQGKN 66 (152)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEET---TSBEEEECHHHHHTSSSCHHHHTTSB
T ss_pred HHHHHHHHHHHHhcCCCCEEEEcC---CCEEEEECHHHHHHHCcCHHHHCCCC
Confidence 445556788999999999999999 77899999999999999999999986
No 20
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.30 E-value=4.1e-07 Score=63.75 Aligned_cols=36 Identities=28% Similarity=0.523 Sum_probs=32.6
Q ss_pred cCCeEEEEcCCCCC-CCEEEEcHHHHHhhCCCcccccCCC
Q 037089 172 LQQTFVVSDATKPD-CPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 172 s~dgIvItDa~~~D-~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
..++|++.|. + +.|+|+|++|++|+||+.+|++|++
T Consensus 7 ~~~~i~~~d~---~~g~I~~~N~aa~~l~G~~~~el~g~~ 43 (114)
T 1ll8_A 7 FNKAIFTVDA---KTTEILVANDKACGLLGYSSQDLIGQK 43 (114)
T ss_dssp TTCEEEEEET---TTCBEEEECTTHHHHHTCCTTTTTTSB
T ss_pred CCceEEEEEC---CCCeEEEehHHHHHHhCCCHHHHcCCC
Confidence 4469999998 5 7899999999999999999999986
No 21
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.27 E-value=5.8e-07 Score=61.20 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=44.3
Q ss_pred chhhHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCC---CcccccCCCC
Q 037089 158 FPRVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGY---SSKEVIGRNW 211 (211)
Q Consensus 158 l~rlsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGY---S~eELIGRNc 211 (211)
+....+.+..+++.++++|++.|. ++.|+|+|++|++|+|| +.++++|+++
T Consensus 10 l~~~~~~~~~il~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~ 63 (118)
T 2w0n_A 10 ISTLFEQRQAMLQSIKEGVVAVDD---RGEVTLINDAAQELLNYRKSQDDEKLSTLS 63 (118)
T ss_dssp HCTTHHHHHHHHHCCCCCCEEEBT---TTBCCCBCHHHHHHHCSCTTTTTSSCCCTT
T ss_pred HHHHHHHHHHHHhhccccEEEECC---CCcEeehhHHHHHHhCCCccChhhhhccCc
Confidence 445556788999999999999998 67899999999999998 8899999863
No 22
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=98.23 E-value=4.2e-07 Score=64.14 Aligned_cols=42 Identities=12% Similarity=0.291 Sum_probs=36.3
Q ss_pred HHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 166 KAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 166 ~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
..+++++++.|++.|. ++.|+|+|++|++|+||+++|++|++
T Consensus 5 ~ll~e~~~d~i~~~d~---~g~i~~~n~~~~~~~G~~~~el~g~~ 46 (121)
T 3f1p_B 5 GLNVCQPTRFISRHNI---EGIFTFVDHRCVATVGYQPQELLGKN 46 (121)
T ss_dssp ---CCCCCEEEEEECT---TSBEEEECTTHHHHHSCCGGGTTTSB
T ss_pred cceecCCCceEEEECC---CceEEEECcchhhhhCCChHHHcCCC
Confidence 3567888999999999 77899999999999999999999975
No 23
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=98.21 E-value=1.1e-06 Score=58.40 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 162 SEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 162 srlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
.+.+..+++..+++|++.|. ++.|+|+|++|++++||+.++++|++
T Consensus 6 ~~~~~~~~~~~~~~i~~~d~---~~~i~~~N~~~~~~~g~~~~~~~g~~ 51 (124)
T 3lyx_A 6 LKQRAKAFDYVFDAIVVTDL---QGFIIDWNKGSETLYGYSKEQAIGQP 51 (124)
T ss_dssp HHHHHHGGGTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSB
T ss_pred HHHHHHHHhhcCceEEEECC---CCcEeehhhHHHHHhCCCHHHHcCCC
Confidence 45688899999999999998 67899999999999999999999975
No 24
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=98.21 E-value=5.5e-07 Score=62.82 Aligned_cols=43 Identities=35% Similarity=0.702 Sum_probs=37.3
Q ss_pred HHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 168 ALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 168 aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
+++.++++|+++|...+++.|+|+|++|++|+||+.++++|++
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~ 44 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRN 44 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSC
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCC
Confidence 4567889999999854356799999999999999999999986
No 25
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=98.21 E-value=1.4e-06 Score=71.93 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=44.5
Q ss_pred chhhHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhh------------CCCcccccCCCC
Q 037089 158 FPRVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMT------------GYSSKEVIGRNW 211 (211)
Q Consensus 158 l~rlsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMT------------GYS~eELIGRNc 211 (211)
+....+.+..+|+.++.+|+++|. ++.|+|+|++|++|+ ||+.++++|+++
T Consensus 17 ~~~e~~~l~~iLd~~~~~vii~D~---~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~ 79 (233)
T 3vol_A 17 RGSHMARIKSALDNVSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANI 79 (233)
T ss_dssp -CTHHHHHHHHHTTSSSEEEEEET---TSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBG
T ss_pred hHHHHHHHHHHHhcCCCcEEEECC---CCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCH
Confidence 345557788999999999999999 778999999999988 899999999863
No 26
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=98.17 E-value=2.2e-06 Score=58.47 Aligned_cols=49 Identities=24% Similarity=0.617 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 162 SEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 162 srlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
.+.+...++.++.+|++.|...+++.|+|+|++|++|+||+.++++|++
T Consensus 18 l~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~ 66 (138)
T 2l0w_A 18 LDTIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRP 66 (138)
T ss_dssp HHHHHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSB
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCC
Confidence 3556677888999999999843346799999999999999999999986
No 27
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.17 E-value=5.6e-07 Score=64.45 Aligned_cols=42 Identities=26% Similarity=0.348 Sum_probs=38.3
Q ss_pred HHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 166 KAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 166 ~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
+.++++++++|++.|. ++.|+|+|++|++|+||+.++++|++
T Consensus 15 ~~il~~~~~~i~~~D~---~g~i~~~N~a~~~l~g~~~~e~~G~~ 56 (118)
T 3fg8_A 15 ENLYFQGGLGFMALDE---DLRIIYVNSGCLRHVRRSRDELLGRV 56 (118)
T ss_dssp CCSSSCTTCEEEEECT---TCBEEEECHHHHHHHTCCHHHHTTSB
T ss_pred HHHHhhCCceEEEECC---CCeEEEECHHHHHHhCCCHHHHcCCc
Confidence 4567888999999998 77899999999999999999999986
No 28
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.15 E-value=9.6e-07 Score=69.82 Aligned_cols=43 Identities=28% Similarity=0.344 Sum_probs=40.6
Q ss_pred HHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCCC
Q 037089 166 KAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211 (211)
Q Consensus 166 ~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRNc 211 (211)
..+++.++.||++.|. ++.|+|+|.++++++||+++|++|++|
T Consensus 20 ~~~ld~l~~Gii~lD~---~g~I~~~N~~~e~~sG~~~~eviGk~~ 62 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDG---DGNILQYNAAEGDITGRDPKQVIGKNF 62 (125)
T ss_dssp HHHHTTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBC
T ss_pred HHHHhccCceEEEECC---CCEEEEEHHHHHHHhCCCHHHHcCCch
Confidence 5679999999999999 788999999999999999999999986
No 29
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=98.13 E-value=2.3e-06 Score=55.70 Aligned_cols=37 Identities=32% Similarity=0.819 Sum_probs=33.4
Q ss_pred CeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 174 QTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 174 dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
.+|+|+|....++.|+|+|++|++|+||+.++++|++
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~ 38 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRP 38 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSB
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCC
Confidence 5899999865568899999999999999999999986
No 30
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.12 E-value=1.3e-06 Score=64.91 Aligned_cols=41 Identities=27% Similarity=0.280 Sum_probs=33.0
Q ss_pred HHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 167 AALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 167 ~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
.+++++.+.|++.|. ++.|+|+|+++++|+||+.+|++|++
T Consensus 3 ~lle~~~d~i~v~d~---~G~i~yvn~~~~~~lGy~~~el~G~~ 43 (111)
T 2vlg_A 3 FPLQTKTDIHAVLAS---NGRIIYISANSKLHLGYLQGEMIGSF 43 (111)
T ss_dssp ------CCEEEEECT---TSBEEEECTTHHHHHSCCHHHHTTSB
T ss_pred chhhcCCCEEEEEcC---CCeEEEEChHHHHHhCCCHHHHcCCc
Confidence 467888999999998 67899999999999999999999985
No 31
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.12 E-value=2.1e-06 Score=55.07 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 173 QQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 173 ~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
+++|++.|. ++.|+|+|++|++|+||+.++++|++
T Consensus 2 ~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~ 36 (96)
T 3a0s_A 2 ETAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRR 36 (96)
T ss_dssp CCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSB
T ss_pred CceEEEEcC---CCCEeehhHHHHHHhCCCHHHhcCCC
Confidence 578999998 67899999999999999999999985
No 32
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=98.08 E-value=1.2e-06 Score=61.11 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=36.2
Q ss_pred HHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 167 AALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 167 ~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
++++..++.|++.|. ++.|+|+|++|++|+||+.+|++|+.
T Consensus 7 ~~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~el~g~~ 47 (121)
T 2kdk_A 7 EINVKPTEFITRFAV---NGKFVYVDQRATAILGYLPQELLGTS 47 (121)
T ss_dssp CCCCCSSEEEEEECT---TSBEEEECTHHHHHTCCCTTTSBTSB
T ss_pred ccccCCccEEEEECC---CeeEEEEChhHHHHHCCCHHHHcCCc
Confidence 345677889999998 67899999999999999999999985
No 33
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=98.08 E-value=3.7e-06 Score=61.49 Aligned_cols=44 Identities=9% Similarity=0.283 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCeEEEEc-CCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 162 SEELKAALATLQQTFVVSD-ATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 162 srlL~~aLdss~dgIvItD-a~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
.+.+..+++.++.+|++.| . ++.|+|+|++|++|+||. +++|++
T Consensus 16 ~~~~~~~~~~~~~~i~~~d~~---~~~i~~~N~~~~~~~g~~--~~~G~~ 60 (158)
T 3k3c_A 16 AEDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQP 60 (158)
T ss_dssp HHHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCTTC--CSTTSB
T ss_pred HHHHHHHHhcCCceEEEEECC---CcEeHHHHHHHHHHcCCc--hhcCCc
Confidence 3568899999999999999 7 678999999999999999 899975
No 34
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.08 E-value=1.4e-06 Score=62.85 Aligned_cols=43 Identities=44% Similarity=0.761 Sum_probs=35.2
Q ss_pred HHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCCC
Q 037089 168 ALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211 (211)
Q Consensus 168 aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRNc 211 (211)
+++.. .+|+++|....++.|+|+|++|++|+||+.+|++|+++
T Consensus 31 ~~~~~-~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~ 73 (149)
T 3d72_A 31 PVDTS-VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNC 73 (149)
T ss_dssp SCCTT-SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCG
T ss_pred hhcCC-ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCCh
Confidence 34443 89999994333678999999999999999999999863
No 35
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=98.06 E-value=2.7e-06 Score=61.78 Aligned_cols=49 Identities=22% Similarity=0.447 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 162 SEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 162 srlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
.+.+..+++.++++|++.|..+.+..|+|+|++|++|+||..++++|++
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~ 72 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQD 72 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSB
T ss_pred HHHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCC
Confidence 3568899999999999999832111899999999999999999999975
No 36
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.05 E-value=9.5e-07 Score=70.47 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=40.0
Q ss_pred HHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCCC
Q 037089 166 KAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211 (211)
Q Consensus 166 ~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRNc 211 (211)
..+++.++.||++.|. ++.|+|+|.++++++||+++|++|++|
T Consensus 25 ~~~ld~l~~GiivlD~---dg~I~~~N~~~e~isG~s~eeviGk~~ 67 (129)
T 1mzu_A 25 TAEFDALPVGAIQVDG---SGVIHRYNRTESRLSGRIPERVIGRNF 67 (129)
T ss_dssp CTTGGGCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBC
T ss_pred HHHHhccCceEEEECC---CCeEEEEHHHHHHHhCCCHHHHcCCch
Confidence 4469999999999999 788999999999999999999999986
No 37
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=98.03 E-value=2.4e-06 Score=57.33 Aligned_cols=51 Identities=8% Similarity=0.060 Sum_probs=41.3
Q ss_pred chhhHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 158 FPRVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 158 l~rlsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
+....+.+..+++.++.+|++.|.. .+.|+|+|++|++|+||+.++++|+.
T Consensus 6 l~~~~~~~~~~~~~~~~~i~~~d~~--~~~i~~~n~~~~~~~g~~~~~~~~~~ 56 (125)
T 3eeh_A 6 AAKSERRVRELTEATNDILWEFTAD--LSEVLVINSAYEDIWGRSVAKLRENP 56 (125)
T ss_dssp ----CHHHHHHHSCCCCEEEEEETT--SSCEEEECTHHHHHHSSCHHHHHHCG
T ss_pred HHHHHHHHHHHHhcCCceEEEEEcC--CCcEEEecHHHHHHHCCCHHHHccCc
Confidence 4444567889999999999999993 16899999999999999999988753
No 38
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=98.01 E-value=5.1e-06 Score=59.81 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 161 VSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 161 lsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
..+.+..+++.++++|++.|. ++.|+|+|++|++|+||..++++|++
T Consensus 38 ~~~~~~~~l~~~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~ 84 (167)
T 1v9y_A 38 ADGIFFPALEQNMMGAVLINE---NDEVMFFNPAAEKLWGYKREEVIGNN 84 (167)
T ss_dssp --CCHHHHHHTCSSEEEEECT---TSBEEEECHHHHHHHSCCGGGTTTSB
T ss_pred hhHHHHHHHHhCCCCEEEECC---CCcEEEECHHHHHHhCCCHHHHcCCC
Confidence 334578899999999999998 67899999999999999999999975
No 39
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=97.99 E-value=1.4e-06 Score=59.91 Aligned_cols=41 Identities=17% Similarity=0.418 Sum_probs=37.2
Q ss_pred HHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 167 AALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 167 ~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
.+++.++++|++.|. ++.|+|+|++|++|+||+.++++|++
T Consensus 3 ~l~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~ 43 (126)
T 3mjq_A 3 NFLETIEDMILIINR---EGRLLYANTAVPKKLGYTHEELMSMH 43 (126)
T ss_dssp TTGGGCSSEEEEEET---TSBEEEECTHHHHHHSCCHHHHHHSB
T ss_pred hHHhhCCceEEEEeC---CCcEEEEcHHHHHHHCCCHHHHcCCC
Confidence 467889999999998 67899999999999999999999875
No 40
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=97.99 E-value=6.3e-06 Score=56.09 Aligned_cols=46 Identities=13% Similarity=-0.026 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccC
Q 037089 160 RVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIG 208 (211)
Q Consensus 160 rlsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIG 208 (211)
...+.+..+++.++.+|++.|. ++.++|+|++|++|+||+.++++|
T Consensus 4 ~~~~~l~~~~~~~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~ 49 (125)
T 3nja_A 4 MAEKLLHTAESDAGIGSWVLHM---ESGRLEWSQAVHDIFGTDSATFDA 49 (125)
T ss_dssp -------------CCEEEEEET---TTTEEEECHHHHHHHTCCTTTCCC
T ss_pred HHHHHHHHHHHhCCeeEEEEEc---CCCcEEECHHHHHHhCCCcccccc
Confidence 3345678899999999999999 567999999999999999999987
No 41
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.99 E-value=8.2e-06 Score=62.72 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 159 PRVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 159 ~rlsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
++..+.+..+++..+++|++.|. ++.|+|+|+++++|+||+.++++|++
T Consensus 76 ~~~~~~l~~il~~~~~gvi~~D~---~g~I~~~N~aa~~llg~~~~~~~g~~ 124 (190)
T 2jhe_A 76 EREHLALSALLEALPEPVLSVDM---KSKVDMANPASCQLFGQKLDRLRNHT 124 (190)
T ss_dssp THHHHHHHHHHHHCSSCEEEECT---TCBEEEECHHHHHHHTSCHHHHTTSB
T ss_pred HHHHHHHHHHHHhCCCcEEEEcC---CCCEEEEcHHHHHHhCCCHHHhcCcc
Confidence 55667889999999999999999 67899999999999999999999985
No 42
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=97.95 E-value=8.1e-06 Score=62.85 Aligned_cols=44 Identities=9% Similarity=0.283 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCeEEEEc-CCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 162 SEELKAALATLQQTFVVSD-ATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 162 srlL~~aLdss~dgIvItD-a~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
.+.+..++++++++|++.| . ++.|+|+|++|++|+||+ +++|++
T Consensus 36 ~~~l~~l~~~~~~~i~~~d~~---~g~i~~~N~a~~~l~G~~--~~~G~~ 80 (185)
T 3kx0_X 36 AEDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQP 80 (185)
T ss_dssp HHHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCCCC--SCTTSB
T ss_pred HHHHHHHHhcCCceEEEEECC---CcEEEEEcHHHHHHcCCc--cccCCc
Confidence 4568899999999999999 7 678999999999999999 999975
No 43
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=97.94 E-value=4.1e-06 Score=58.47 Aligned_cols=35 Identities=20% Similarity=0.451 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 173 QQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 173 ~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
.+.|++.|. ++.|+|+|++|++|+||+++|++|++
T Consensus 9 ~~~i~~~d~---~g~i~~~n~~~~~~~Gy~~~el~g~~ 43 (117)
T 3f1p_A 9 KTFLSEHSM---DMKFTYCDDRITELIGYHPEELLGRS 43 (117)
T ss_dssp GEEEEEECT---TCBEEEECTHHHHHHCCCHHHHTTSB
T ss_pred ccEEEEECC---CceEEEECcChhhhhCCCHHHHcCCc
Confidence 467888998 67899999999999999999999975
No 44
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=97.79 E-value=1.8e-05 Score=54.24 Aligned_cols=45 Identities=40% Similarity=0.839 Sum_probs=38.2
Q ss_pred HHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 166 KAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 166 ~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
..+++.++.+|++.|...+++.|+|+|++|++++||..++++|++
T Consensus 5 ~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~ 49 (146)
T 2v0u_A 5 ATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRN 49 (146)
T ss_dssp CCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSC
T ss_pred HHHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCC
Confidence 346788999999999833345799999999999999999999986
No 45
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=97.66 E-value=2.3e-05 Score=61.47 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHH---HHHhhCCCcccccCCCC
Q 037089 163 EELKAALATLQQTFVVSDATKPDCPIMYASSG---FFSMTGYSSKEVIGRNW 211 (211)
Q Consensus 163 rlL~~aLdss~dgIvItDa~~~D~pIVYVN~A---FerMTGYS~eELIGRNc 211 (211)
..|..+|+.++.+|+++|. ++.|+|+|++ +++|+| ..++++|++|
T Consensus 19 ~~l~~IL~~~~~gI~~vD~---~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v 66 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNK---DDIFQYYNDSVPAAEMVFK-RTPSQVGRNV 66 (151)
T ss_dssp HHHHHHHHHSSSEEEEEET---TSBEEEECCCSCGGGCSSC-CCGGGTTSBG
T ss_pred HHHHHHHHhCCCceEEEcC---CCeEEEEeCCCchhhhhcC-CCHHHcCCCH
Confidence 4588999999999999999 6789999999 999999 6689999975
No 46
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=97.51 E-value=1.9e-05 Score=53.74 Aligned_cols=44 Identities=14% Similarity=0.006 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCC
Q 037089 163 EELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGR 209 (211)
Q Consensus 163 rlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGR 209 (211)
+.+..+++.++.+|++.|. +..++|+|++|++|+||+.++++|.
T Consensus 4 ~~~~~l~~~~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~~ 47 (118)
T 3icy_A 4 EELQALVDNIPAAIYHLDV---SGQATIRFRPPAFLKTLVSEHAGTT 47 (118)
T ss_dssp HHHHHHHTTCCCCCEEECT---TSCEEECCCCCGGGGGGEEEETTEE
T ss_pred HHHHHHHhcCCceEEEEEc---CCCceEEechhHhhcCCCHHHccCC
Confidence 5678899999999999999 5679999999999999999997764
No 47
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=97.30 E-value=0.00022 Score=52.15 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccC
Q 037089 160 RVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIG 208 (211)
Q Consensus 160 rlsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIG 208 (211)
...+.+..+++....++|..|. +..++|+|++|++|+||..+++.+
T Consensus 6 ~se~rl~~~~~~~~~g~w~~d~---~~~~~~~s~~~~~~~G~~~~~~~~ 51 (142)
T 3mr0_A 6 ASEERFQLAVSGASAGLWDWNP---KTGAMYLSPHFKKIMGYEDHELPD 51 (142)
T ss_dssp ---CCHHHHHHHTTCEEEEECT---TTCCEEECHHHHHHTTCCGGGSCS
T ss_pred HHHHHHHHHHHhCCcEEEEEEc---CCCeEEECHHHHHHhCCCccccCC
Confidence 3344577889999999999999 556899999999999999988765
No 48
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.02 E-value=0.00045 Score=60.83 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=37.5
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 165 LKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 165 L~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
...+++++...|+|.|. ++.|+|||++|+.++||+.+|++|++
T Consensus 88 ~~~~l~a~~~~i~v~~~---~G~i~yvs~~~~~~lGy~~~el~g~~ 130 (361)
T 4f3l_A 88 TQLMLEALDGFFLAIMT---DGSIIYVSESVTSLLEHLPSDLVDQS 130 (361)
T ss_dssp HHHHHHHTTEEEEEEET---TSBEEEECTTHHHHHCCCHHHHTTSB
T ss_pred HHHHHHhcCceEEEEcC---CccEEEEechhhhhcCCCHHHhcCCc
Confidence 44567777788889987 67899999999999999999999985
No 49
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=97.01 E-value=0.00054 Score=47.47 Aligned_cols=35 Identities=6% Similarity=-0.006 Sum_probs=29.6
Q ss_pred cCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccC
Q 037089 172 LQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIG 208 (211)
Q Consensus 172 s~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIG 208 (211)
+.++||..|.. ++.|+|+|++|++|+||+.++++|
T Consensus 2 a~~giw~~d~~--~~~~~~~n~~~~~l~G~~~~e~~~ 36 (115)
T 3h9w_A 2 TKAIPWKINWQ--TMAFEYIGPQIEALLGWPQGSWKS 36 (115)
T ss_dssp -CCEEEEEETT--TTEEEEECTHHHHHHCSCGGGCCB
T ss_pred cceEEEEEEcC--CCcEEEEChhHHHHhCCChHHccC
Confidence 46789999963 567999999999999999999876
No 50
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=96.95 E-value=0.00052 Score=60.96 Aligned_cols=46 Identities=28% Similarity=0.312 Sum_probs=41.4
Q ss_pred hHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCCC
Q 037089 161 VSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211 (211)
Q Consensus 161 lsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRNc 211 (211)
....+..+|+.++++|+++|. ++.|+|+|++ ++|+ |..++++|++|
T Consensus 237 ~~~~l~~IL~~l~dgIivvD~---~g~I~~~N~a-e~i~-~~~~e~iGr~v 282 (369)
T 3cax_A 237 NIEELKAIFEALPVDVTFIDK---DDRVRFFSPG-ERIF-TRTPSVLGRPV 282 (369)
T ss_dssp CHHHHHHHHHHSSSEEEEECT---TSBEEEECCS-SCSS-CCCGGGTTCBT
T ss_pred hHHHHHHHHHhCCCcEEEECC---CCcEEEEcCH-HHcc-CChHHHcCCcH
Confidence 345688999999999999999 6789999999 9999 99999999975
No 51
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=96.80 E-value=0.00082 Score=63.97 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=38.5
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 165 LKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 165 L~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
+..++++..++|+++|. ++.|+|+|++|++|+||+.+|++|+.
T Consensus 520 ~~~lle~a~~~i~~~D~---~grI~~~N~a~~~l~G~s~~e~~g~~ 562 (635)
T 4eho_A 520 ASSQVHASMQPVLITDA---EGRILLMNDSFRDMLPAGSPSAVHLD 562 (635)
T ss_dssp HHHHHHHCSSCCEEEET---TCCEEEECHHHHTTSCSSCCCCCSSG
T ss_pred HHHHHHhCCCcEEEECC---CCeEeeHHHHHHHHHCcChHHHcCcc
Confidence 44567889999999999 67899999999999999999999974
No 52
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=96.49 E-value=0.0022 Score=57.25 Aligned_cols=43 Identities=21% Similarity=0.415 Sum_probs=35.9
Q ss_pred HHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 166 KAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 166 ~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
..+++++...|+|.+.. .+.|+|||++++.++||+.+|++|++
T Consensus 89 ~~ll~~~~gfi~v~~~~--~G~i~yvs~~~~~~lG~~~~el~g~~ 131 (387)
T 4f3l_B 89 HLILRAADGFLFVVGCD--RGKILFVSESVFKILNYSQNDLIGQS 131 (387)
T ss_dssp HHHHHTCCSEEEEEETT--TCBEEEECTTHHHHHSCCHHHHTTSB
T ss_pred HHHHhcCCCEEEEEecC--CeEEEEEchhhHHHcCCCHHHHCCCc
Confidence 44667777778888872 27899999999999999999999985
No 53
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=95.29 E-value=0.0063 Score=53.48 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCCC
Q 037089 176 FVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNW 211 (211)
Q Consensus 176 IvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRNc 211 (211)
++..|. ++.|+|||++|+.++||.++|++|+++
T Consensus 254 ~~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~~ 286 (361)
T 4f3l_A 254 TSRHSL---EWKFLFLDHRAPPIIGYLPFEVLGTSG 286 (361)
T ss_dssp EEEECT---TSBEEEECTTSHHHHCCCHHHHTTSBG
T ss_pred EEEEcC---CceEEEECChhhhhhCcCHHHHcCCCH
Confidence 444454 788999999999999999999999863
No 54
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=95.13 E-value=0.011 Score=52.80 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=28.2
Q ss_pred eEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 175 TFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 175 gIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
.++..|. ++.|+|||++++.|+||.++|++|+.
T Consensus 280 fi~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~ 312 (387)
T 4f3l_B 280 YVSRHAI---DGKFVFVDQRATAILAYLPQELLGTS 312 (387)
T ss_dssp EEEEECT---TSBEEEECTHHHHHHCCCHHHHTTSB
T ss_pred EEEEECC---CCEEEEECCCcccccCCCHHHHcCCc
Confidence 4455555 78899999999999999999999975
No 55
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=94.62 E-value=0.015 Score=51.87 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=29.5
Q ss_pred CeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 174 QTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 174 dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
..+...+. ++.|+|||+++..++||.++|++|+.
T Consensus 155 ~fi~r~~~---dG~~~yvn~~~~~lLGY~peELiG~s 188 (339)
T 3rty_A 155 KFAIRHTA---TGIISHVDSAAVSALGYLPQDLIGRS 188 (339)
T ss_dssp EEEEEEET---TCBEEEECTTHHHHHCCCHHHHTTSB
T ss_pred eEEEEECC---CCeEEEcChhhhcccCCCHHHHcCCc
Confidence 45566666 78899999999999999999999985
No 56
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=93.42 E-value=0.0071 Score=52.54 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=33.1
Q ss_pred HHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhh---CCCcccccCCC
Q 037089 168 ALATLQQTFVVSDATKPDCPIMYASSGFFSMT---GYSSKEVIGRN 210 (211)
Q Consensus 168 aLdss~dgIvItDa~~~D~pIVYVN~AFerMT---GYS~eELIGRN 210 (211)
+++.+.+||+++|. ++.|+|+|+++++|+ |+. ++++|++
T Consensus 175 ~~~~~~dGIivvD~---~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~ 216 (305)
T 2ykf_A 175 SSPRAGDGFIRLDV---DGVVSYASPNALSAYHRMGLT-TELEGVN 216 (305)
Confidence 46689999999999 677999999999997 465 7888875
No 57
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=93.49 E-value=0.036 Score=48.95 Aligned_cols=26 Identities=19% Similarity=0.519 Sum_probs=24.7
Q ss_pred CCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 185 DCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 185 D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
++.|+|||+++..++||.++|++|+.
T Consensus 183 dG~~~yvs~~~~~lLGY~peELig~s 208 (317)
T 4dj3_A 183 GCVFLEVDERAVPLLGYLPQDLIGTS 208 (317)
T ss_dssp TSBEEEECTTHHHHHSCCHHHHTTSB
T ss_pred CCeEEEEChHHhhhcCcChHHHcCCC
Confidence 78899999999999999999999985
No 58
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=93.22 E-value=0.042 Score=48.60 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=27.9
Q ss_pred eEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 175 TFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 175 gIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
-+...+. ++.|+|||+++..++||.++|++|+.
T Consensus 178 Fitrh~~---dG~~~yvd~~~~~lLGY~peELig~s 210 (320)
T 4dj2_A 178 FTTRHTP---SCLFQDVDERAAPLLGYLPQDLLGAP 210 (320)
T ss_dssp EEEEECT---TCBEEEECTTHHHHHSCCHHHHTTSB
T ss_pred EEEEecC---CceEEEcCcceeccCCcChHHHcCCc
Confidence 3444454 78899999999999999999999985
No 59
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=93.11 E-value=0.039 Score=48.51 Aligned_cols=32 Identities=13% Similarity=0.287 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 176 FVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 176 IvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
+...+. ++.|+|||+++..++||.++|++|+.
T Consensus 168 itrh~~---dG~~~yvd~~~~~lLGY~peELig~s 199 (309)
T 3gdi_A 168 TTTHTP---NCLFQAVDERAVPLLGYLPQDLIETP 199 (309)
T ss_dssp EEEECT---TCBEEEECTTHHHHHSCCHHHHTTSB
T ss_pred EEEecC---CCeEEEECcccccccCcCHHHHcCCC
Confidence 344444 78899999999999999999999985
No 60
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=92.85 E-value=0.078 Score=46.89 Aligned_cols=40 Identities=15% Similarity=0.025 Sum_probs=30.3
Q ss_pred HHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 169 LATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 169 Ldss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
|.++..-++|.... ++.|+|+++.+..++||+.+|++|+.
T Consensus 32 LqaldGF~~vvs~~--~G~i~yvS~sv~~~Lg~~~~~l~g~s 71 (320)
T 4dj2_A 32 LRNQDTFSVAVSFL--TGRIVYISEQAGVLLRCKRDVFRGAR 71 (320)
T ss_dssp TSCSSEEEEEEETT--TCBEEEECTHHHHHHTSCSTTTTTSB
T ss_pred HhccCCEEEEEECC--CceEEEECcHHHHHhCcCHHHHcCCc
Confidence 44443334455542 47899999999999999999999985
No 61
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=91.64 E-value=0.053 Score=47.65 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=23.5
Q ss_pred HHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 169 LATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 169 Ldss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
|+++..-++|.+.. ++.|+|+++.+..++||+.+|++|+.
T Consensus 21 l~a~dgF~~vvs~~--~G~i~yvS~s~~~~Lg~~~~el~g~s 60 (309)
T 3gdi_A 21 VKNADMFAVAVSLV--SGKILYISNQVASIFHCKKDAFSDAK 60 (309)
T ss_dssp --CTTEEEEEECTT--TCBEEEECTTTTTTC-------CCSB
T ss_pred HHhcCCEEEEEECC--CceEEEECCHHHHHcCCCHHHHcCCc
Confidence 44444445666662 37899999999999999999999975
No 62
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=90.49 E-value=0.11 Score=45.86 Aligned_cols=40 Identities=5% Similarity=-0.178 Sum_probs=30.9
Q ss_pred HHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 169 LATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 169 Ldss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
|.++..-++|.... ++.|+||++....++||+.+|++|+.
T Consensus 32 L~aldgF~~vvs~~--~G~i~yvS~~~~~~Lg~~~~el~g~s 71 (317)
T 4dj3_A 32 SKNTDTFAAVFSFL--SGRLVHISEQAALILNSKRGFLKSVH 71 (317)
T ss_dssp TSCTTEEEEEEETT--TCBEEEECTTHHHHTTCCHHHHHTSB
T ss_pred HhccCCEEEEEEcC--CcEEEEECCHHHHHcCCCHHHHcCCc
Confidence 44443445566652 47899999999999999999999985
No 63
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=72.67 E-value=3.1 Score=37.24 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=28.3
Q ss_pred eEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 175 TFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 175 gIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
..++.|. .++.|+++|+.+..++||+.++++|++
T Consensus 44 ~Ll~~~~--~~~~i~~~S~N~~~~lg~~~~~llG~~ 77 (337)
T 2ool_A 44 YLFVVSE--TDLRIASVSANVEDLLRQPPASLLNVP 77 (337)
T ss_dssp EEEEECT--TTCBEEEEETTHHHHHSSCGGGGTTCB
T ss_pred EEEEEEC--CCCEEEEEehhHHHHHCcCHHHHcCCC
Confidence 3455664 267899999999999999999999985
No 64
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=70.60 E-value=6.1 Score=31.22 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhh
Q 037089 163 EELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMT 199 (211)
Q Consensus 163 rlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMT 199 (211)
--++.+....+..|.|-+. ...|+|+|.+|.+|+
T Consensus 20 L~iq~iY~nSPVpVCVRNq---~RkilYaN~aF~elF 53 (127)
T 4ew7_A 20 LSIQDIYKNSPVPVCVRNQ---SRKIIYANGAFIELF 53 (127)
T ss_dssp HHHHHHHTTCSSCEEEECT---TSCEEEECHHHHHHT
T ss_pred HhHHhhhcCCCccEEEecc---cceEEEecchHHHHh
Confidence 3467888999999999988 456999999999993
No 65
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=42.27 E-value=15 Score=30.30 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=33.0
Q ss_pred chhhHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccc
Q 037089 158 FPRVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEV 206 (211)
Q Consensus 158 l~rlsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTGYS~eEL 206 (211)
+....+.+..........++|.|-. .+.+.|++..|..++||+.+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~s~~~~~llG~~~~~~ 74 (258)
T 3clo_A 28 VEQHQQFVRSLTEVNGGCAVISDLS--NRKSYVTVHPWANFLGLTPEEA 74 (258)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEETT--TTEEEEEECTTCGGGCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEcC--CCeEEEEeCCHHHHhCCCcccc
Confidence 3333333333333445678899975 5678899999999999998866
No 66
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=29.62 E-value=71 Score=27.79 Aligned_cols=40 Identities=13% Similarity=0.013 Sum_probs=33.6
Q ss_pred chhhHHHHHHHHHhcCCeEEEEcCCCCCCCEEEEcHHHHHhhC
Q 037089 158 FPRVSEELKAALATLQQTFVVSDATKPDCPIMYASSGFFSMTG 200 (211)
Q Consensus 158 l~rlsrlL~~aLdss~dgIvItDa~~~D~pIVYVN~AFerMTG 200 (211)
...+...+..+|+..+...+|.|. ...|+.+|+++..+++
T Consensus 94 ~~~v~p~l~~lLd~l~~PA~V~d~---~~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 94 PEESLQYLIDMIRNMNVPAFVTDQ---YVNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEET---TCBEEEEEHHHHHHHT
T ss_pred ccccCHHHHHHHHhcCCCeEEECC---CCCHhhcCHHHHHHhC
Confidence 355667788899988778999999 5679999999999886
No 67
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=25.85 E-value=42 Score=30.26 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=29.1
Q ss_pred CeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 174 QTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 174 dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
..+++.|.. +..|+++++....++|+..++++|++
T Consensus 53 G~LL~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~~ 87 (343)
T 3s7o_A 53 GALLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQT 87 (343)
T ss_dssp SEEEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCB
T ss_pred eEEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCC
Confidence 445666653 67899999999999999999999975
No 68
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=23.00 E-value=54 Score=29.26 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=28.8
Q ss_pred CeEEEEcCCCCCCCEEEEcHHHHHhhCCCcccccCCC
Q 037089 174 QTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRN 210 (211)
Q Consensus 174 dgIvItDa~~~D~pIVYVN~AFerMTGYS~eELIGRN 210 (211)
..+++.|. +..|++++.....++|...++++|++
T Consensus 30 G~Ll~~~~---~~~I~~~S~N~~~~lg~~~~~~lG~~ 63 (327)
T 4e04_A 30 GLLLALAA---DMTIVAGSDNLPELTGLAIGALIGRS 63 (327)
T ss_dssp SEEEEECT---TCBEEEEETTHHHHHSCCHHHHTTCB
T ss_pred eEEEEEcC---CCeEEEEcccHHHHhCCChHhhcCCC
Confidence 45566673 78999999999999999999999975
Done!