BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037090
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 114/225 (50%), Gaps = 60/225 (26%)
Query: 9 QVMMKPARDEQDFLLAMELASGTILPMTIKSAIE-------------------------- 42
Q++ + DE+ L AM+LAS +LPM +K+AIE
Sbjct: 10 QIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQL 69
Query: 43 ----------LDR---------------------SVQRLYGLAPVSKYFVPNEEGVSLAP 71
LDR V+RLYGLAPV K+ NE+GVSLAP
Sbjct: 70 PTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAP 129
Query: 72 TLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTT 131
LL+ DKV ++ W +KDA+LEG +PF KA+ GM+ F D +IN +FN+ M +++T
Sbjct: 130 FLLLATDKVLLEPWFYLKDAILEGGIPFNKAY-GMNIFDYHGTDHRINKVFNKGMSSNST 188
Query: 132 IVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI 176
I MK+ILE Y GFE L VDV G G ++++ K S+N I
Sbjct: 189 ITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYP--SINAI 231
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 129 bits (325), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 94/145 (64%), Gaps = 3/145 (2%)
Query: 27 LASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWS 86
LA IL ++++ + D VQRLYGLA V+KY V NE+GVS++ L+ QDKV M+SW
Sbjct: 84 LACYIILTCSVRT--QQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWY 141
Query: 87 CVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFER 146
+KDA+L+G +PF KA+ GM F D + N +FN+ M +H+TI MK+ILETY GFE
Sbjct: 142 HLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEG 200
Query: 147 LNQFVDVADGLGENKNILLTKISII 171
L VDV G G N +++K I
Sbjct: 201 LKSLVDVGGGTGAVINTIVSKYPTI 225
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 17 DEQDFLLAMELASGTILPMTIKSAIELD 44
DE+ L AM+LAS ++LPM +KSA+ELD
Sbjct: 16 DEEANLFAMQLASASVLPMILKSALELD 43
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 101/203 (49%), Gaps = 57/203 (28%)
Query: 12 MKPARDEQDFLLAMELASGTILPMTIKSAIEL---------------------------- 43
M + DE + A++LAS ++LPMT+K+AIEL
Sbjct: 12 MAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAAN 71
Query: 44 -------DRSVQRL---------------------YGLAPVSKYFVPNEEGVSLAPTLLI 75
DR ++ L YG APV K+ PNE+GVS+A L+
Sbjct: 72 PEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALM 131
Query: 76 IQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMK 135
QDKV M+SW +KDA+L+G +PF KA+ GM F D + N +FN+ M NH+ I+ K
Sbjct: 132 NQDKVLMESWYYLKDAVLDGGIPFNKAY-GMSAFEYHGTDPRFNRVFNEGMKNHSIIITK 190
Query: 136 EILETYKGFERLNQFVDVADGLG 158
++LE Y GFE L VDV G+G
Sbjct: 191 KLLELYHGFEGLGTLVDVGGGVG 213
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 2/145 (1%)
Query: 27 LASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWS 86
LAS ++L T ++ IE D +R+YGL+ V KY VP+E LA + + W
Sbjct: 92 LASYSVLTSTTRT-IE-DGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWM 149
Query: 87 CVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFER 146
K+A+++ + K +G+ + KD+K+N +FN+SM + MK +LE Y GFE
Sbjct: 150 NFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEG 209
Query: 147 LNQFVDVADGLGENKNILLTKISII 171
++ VDV G G N ++++K +I
Sbjct: 210 ISTLVDVGGGSGRNLELIISKYPLI 234
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
Query: 28 ASGTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSC 87
AS ++L T ++ IE D +R+YGL+ V KY VP+E LA + + W
Sbjct: 93 ASYSVLTSTTRT-IE-DGGAERVYGLSXVGKYLVPDESRGYLASFTTFLCYPALLQVWXN 150
Query: 88 VKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERL 147
K+A+++ + K +G+ + KD+K N +FN+S + K LE Y GFE +
Sbjct: 151 FKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLEIYTGFEGI 210
Query: 148 NQFVDVADGLGENKNILLTKISII 171
+ VDV G G N ++++K +I
Sbjct: 211 STLVDVGGGSGRNLELIISKYPLI 234
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 48 QRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMD 107
+ Y L S+ V E + LAP + + D S+ +K + E + + G D
Sbjct: 96 EEAYALTVASELLVKGTE-LCLAPMVECVLDPTLSTSFHNLKKWVYEEDLTLFAVNLGCD 154
Query: 108 GFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNIL 164
+ K+ + N L+N ++ + + ++ + + FE L VDV G G I+
Sbjct: 155 LWEFLNKNPEYNTLYNDALASDSKMINLAMKDCNLVFEGLESIVDVGGGNGTTGKII 211
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
Length = 853
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 30 GTILPMTIKSAIELDRSVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVK 89
GT+ P+ AIEL + + PVS+ +VP+ EGV LL ++ V
Sbjct: 455 GTLTPL----AIELSKPHPQGEEYGPVSEVYVPSSEGVEAYIWLL-------AKAYVVVN 503
Query: 90 DALLEGLVP-FMKAHNGMDGFAVA 112
DA ++ ++ H ++ F +A
Sbjct: 504 DACYHQIISHWLNTHAVVEPFVIA 527
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 26.9 bits (58), Expect = 5.6, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 95 GLVPFMKAHNGMDGFAVAAKDEKINNLF 122
G FM A+NG++G DE +NN+
Sbjct: 234 GAASFMCAYNGLNGKPSCGNDELLNNVL 261
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 57 SKYFVPNEEGVSLAPTLLIIQDKVNMDSW--SCVKDALLEGLVPFMK 101
+KYF ++ VS +++D V MD++ C+KD +P K
Sbjct: 298 AKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCK 344
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Query: 51 YGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFA 110
Y L S+ V + + LAP + + D S+ +K + E + G +
Sbjct: 94 YALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWD 152
Query: 111 VAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNIL 164
K+ + N FN +M + + ++ + + F+ L VDV G G I+
Sbjct: 153 FLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKII 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,921,012
Number of Sequences: 62578
Number of extensions: 189870
Number of successful extensions: 435
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 19
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)