Query 037090
Match_columns 178
No_of_seqs 120 out of 1094
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 08:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 99.9 2.1E-25 4.6E-30 175.8 13.1 129 46-176 1-130 (241)
2 KOG3178 Hydroxyindole-O-methyl 99.9 7.6E-21 1.6E-25 154.1 12.9 159 16-176 2-207 (342)
3 TIGR02716 C20_methyl_CrtF C-20 99.5 6E-14 1.3E-18 114.3 11.1 121 46-176 55-179 (306)
4 PRK06922 hypothetical protein; 97.8 7.2E-05 1.6E-09 66.5 7.8 69 106-175 377-447 (677)
5 PRK14103 trans-aconitate 2-met 97.3 0.00089 1.9E-08 53.1 7.3 52 121-174 6-57 (255)
6 PRK08287 cobalt-precorrin-6Y C 97.3 0.00066 1.4E-08 51.3 5.7 53 122-175 6-60 (187)
7 TIGR02469 CbiT precorrin-6Y C5 97.1 0.0022 4.8E-08 44.4 6.5 38 136-174 10-47 (124)
8 PRK01683 trans-aconitate 2-met 97.0 0.003 6.5E-08 50.0 7.5 40 134-174 20-59 (258)
9 TIGR02021 BchM-ChlM magnesium 96.9 0.0034 7.3E-08 48.6 6.7 66 107-172 15-81 (219)
10 COG2813 RsmC 16S RNA G1207 met 96.9 0.0024 5.2E-08 51.8 5.6 41 135-176 148-188 (300)
11 PRK15001 SAM-dependent 23S rib 96.8 0.003 6.6E-08 53.2 5.8 41 135-176 218-258 (378)
12 COG4106 Tam Trans-aconitate me 96.8 0.004 8.7E-08 48.4 5.8 40 134-174 19-58 (257)
13 PRK00107 gidB 16S rRNA methylt 96.4 0.01 2.2E-07 45.1 6.2 29 147-175 46-74 (187)
14 PRK00274 ksgA 16S ribosomal RN 96.4 0.0073 1.6E-07 48.5 5.4 39 134-173 31-69 (272)
15 PF05175 MTS: Methyltransferas 96.3 0.0054 1.2E-07 45.7 3.8 29 146-174 31-59 (170)
16 PRK07402 precorrin-6B methylas 96.2 0.018 3.8E-07 43.8 6.6 38 137-175 32-69 (196)
17 PRK09489 rsmC 16S ribosomal RN 96.2 0.012 2.6E-07 49.0 5.8 40 135-175 186-225 (342)
18 PF02353 CMAS: Mycolic acid cy 96.1 0.012 2.7E-07 47.4 5.3 40 134-175 51-90 (273)
19 PRK00121 trmB tRNA (guanine-N( 96.1 0.014 3E-07 44.8 5.3 36 137-174 33-68 (202)
20 TIGR00755 ksgA dimethyladenosi 96.0 0.015 3.3E-07 46.1 5.5 39 134-173 18-56 (253)
21 PRK07580 Mg-protoporphyrin IX 96.0 0.016 3.5E-07 44.8 5.5 29 144-172 61-89 (230)
22 TIGR00138 gidB 16S rRNA methyl 96.0 0.0085 1.8E-07 45.3 3.7 29 147-175 43-71 (181)
23 COG2230 Cfa Cyclopropane fatty 96.0 0.022 4.8E-07 46.1 6.2 40 132-173 59-98 (283)
24 PRK11036 putative S-adenosyl-L 96.0 0.017 3.7E-07 45.8 5.5 34 136-171 36-69 (255)
25 TIGR02752 MenG_heptapren 2-hep 95.9 0.021 4.5E-07 44.3 5.8 39 135-174 35-74 (231)
26 PRK14121 tRNA (guanine-N(7)-)- 95.9 0.018 4E-07 48.6 5.8 37 137-174 114-150 (390)
27 PRK10258 biotin biosynthesis p 95.8 0.036 7.7E-07 43.7 6.7 38 130-168 27-64 (251)
28 PRK11207 tellurite resistance 95.8 0.015 3.3E-07 44.4 4.4 34 135-169 20-53 (197)
29 TIGR02072 BioC biotin biosynth 95.8 0.048 1E-06 42.0 7.2 28 147-174 35-62 (240)
30 PRK00216 ubiE ubiquinone/menaq 95.7 0.062 1.3E-06 41.5 7.6 39 136-175 42-81 (239)
31 COG2242 CobL Precorrin-6B meth 95.7 0.029 6.2E-07 42.6 5.4 38 138-176 27-64 (187)
32 PRK04457 spermidine synthase; 95.6 0.019 4.2E-07 45.9 4.4 31 146-176 66-96 (262)
33 TIGR03587 Pse_Me-ase pseudamin 95.6 0.028 6E-07 43.3 5.1 29 146-174 43-71 (204)
34 PRK14896 ksgA 16S ribosomal RN 95.6 0.025 5.4E-07 45.1 5.0 36 134-170 18-53 (258)
35 PF13679 Methyltransf_32: Meth 95.5 0.022 4.9E-07 41.1 4.2 31 144-174 23-57 (141)
36 PRK15451 tRNA cmo(5)U34 methyl 95.4 0.024 5.2E-07 44.8 4.4 31 145-175 55-87 (247)
37 PRK06202 hypothetical protein; 95.4 0.07 1.5E-06 41.6 7.0 24 145-168 59-82 (232)
38 TIGR00438 rrmJ cell division p 95.4 0.048 1E-06 41.1 5.9 33 137-169 23-55 (188)
39 TIGR03534 RF_mod_PrmC protein- 95.4 0.044 9.6E-07 42.8 5.8 29 147-175 88-116 (251)
40 TIGR00740 methyltransferase, p 95.4 0.027 5.9E-07 44.1 4.5 30 145-174 52-83 (239)
41 COG4123 Predicted O-methyltran 95.2 0.034 7.4E-07 44.2 4.5 39 137-175 35-73 (248)
42 TIGR01934 MenG_MenH_UbiE ubiqu 95.2 0.054 1.2E-06 41.4 5.6 38 136-174 30-68 (223)
43 PRK15068 tRNA mo(5)U34 methylt 95.1 0.037 8E-07 45.6 4.8 24 147-170 123-146 (322)
44 COG2226 UbiE Methylase involve 95.1 0.062 1.3E-06 42.5 5.7 29 146-174 51-79 (238)
45 TIGR00477 tehB tellurite resis 95.1 0.039 8.4E-07 42.0 4.4 32 136-168 21-52 (195)
46 PLN02244 tocopherol O-methyltr 95.0 0.063 1.4E-06 44.5 5.9 24 145-168 117-140 (340)
47 TIGR03704 PrmC_rel_meth putati 95.0 0.077 1.7E-06 42.2 6.1 28 147-174 87-114 (251)
48 TIGR03533 L3_gln_methyl protei 95.0 0.038 8.2E-07 44.7 4.4 29 147-175 122-150 (284)
49 TIGR00080 pimt protein-L-isoas 95.0 0.066 1.4E-06 41.3 5.6 35 135-170 67-101 (215)
50 PRK09328 N5-glutamine S-adenos 94.9 0.071 1.5E-06 42.4 5.9 32 144-175 106-137 (275)
51 PRK11805 N5-glutamine S-adenos 94.9 0.033 7.2E-07 45.6 3.9 28 148-175 135-162 (307)
52 PF13489 Methyltransf_23: Meth 94.9 0.033 7.1E-07 40.2 3.4 27 145-171 21-47 (161)
53 PTZ00098 phosphoethanolamine N 94.8 0.079 1.7E-06 42.3 5.8 34 134-168 41-74 (263)
54 PRK04266 fibrillarin; Provisio 94.7 0.052 1.1E-06 42.5 4.4 34 140-176 67-100 (226)
55 PF05148 Methyltransf_8: Hypot 94.6 0.076 1.6E-06 41.2 5.0 62 106-167 28-93 (219)
56 TIGR00452 methyltransferase, p 94.6 0.08 1.7E-06 43.6 5.5 25 146-170 121-145 (314)
57 COG4976 Predicted methyltransf 94.6 0.061 1.3E-06 42.4 4.4 56 118-174 94-153 (287)
58 COG0220 Predicted S-adenosylme 94.5 0.077 1.7E-06 41.7 4.9 27 147-173 49-75 (227)
59 PRK11705 cyclopropane fatty ac 94.5 0.14 3.1E-06 43.2 6.8 34 135-169 157-190 (383)
60 PTZ00338 dimethyladenosine tra 94.5 0.084 1.8E-06 43.0 5.2 37 134-171 25-61 (294)
61 TIGR00536 hemK_fam HemK family 94.4 0.052 1.1E-06 43.8 4.0 27 148-174 116-142 (284)
62 PLN02336 phosphoethanolamine N 94.4 0.07 1.5E-06 46.1 4.9 38 134-172 26-63 (475)
63 PRK14966 unknown domain/N5-glu 94.4 0.079 1.7E-06 45.2 5.0 30 146-175 251-280 (423)
64 PRK11188 rrmJ 23S rRNA methylt 94.3 0.19 4.2E-06 38.7 6.7 34 136-169 41-74 (209)
65 KOG3115 Methyltransferase-like 94.3 0.021 4.5E-07 44.1 1.2 23 148-170 62-84 (249)
66 PRK11088 rrmA 23S rRNA methylt 94.1 0.11 2.3E-06 41.7 5.1 26 146-171 85-110 (272)
67 PRK01544 bifunctional N5-gluta 94.1 0.07 1.5E-06 46.7 4.3 29 147-175 139-167 (506)
68 COG2890 HemK Methylase of poly 94.1 0.049 1.1E-06 44.1 3.1 25 149-173 113-137 (280)
69 PLN02336 phosphoethanolamine N 94.0 0.13 2.8E-06 44.4 5.8 36 135-172 256-291 (475)
70 PLN02490 MPBQ/MSBQ methyltrans 94.0 0.18 3.8E-06 42.0 6.2 38 137-175 104-142 (340)
71 PF05185 PRMT5: PRMT5 arginine 93.9 0.12 2.6E-06 44.6 5.3 58 107-168 151-208 (448)
72 PRK13944 protein-L-isoaspartat 93.8 0.14 3.1E-06 39.2 5.2 34 135-169 62-95 (205)
73 COG2264 PrmA Ribosomal protein 93.8 0.099 2.1E-06 42.7 4.3 47 121-170 140-186 (300)
74 PRK12335 tellurite resistance 93.7 0.094 2E-06 42.4 4.1 31 137-168 112-142 (287)
75 PLN02233 ubiquinone biosynthes 93.7 0.41 8.9E-06 38.2 7.7 28 144-171 71-99 (261)
76 smart00138 MeTrc Methyltransfe 93.6 0.82 1.8E-05 36.6 9.3 36 134-170 88-127 (264)
77 PRK00377 cbiT cobalt-precorrin 93.5 0.21 4.5E-06 38.0 5.5 34 139-173 34-68 (198)
78 PF06325 PrmA: Ribosomal prote 93.5 0.13 2.9E-06 41.9 4.6 46 121-169 139-184 (295)
79 PRK13942 protein-L-isoaspartat 93.4 0.23 4.9E-06 38.4 5.6 35 134-169 65-99 (212)
80 PRK05785 hypothetical protein; 93.3 0.13 2.8E-06 40.2 4.1 22 147-168 52-73 (226)
81 PLN02366 spermidine synthase 93.1 0.15 3.2E-06 41.9 4.4 27 145-172 90-116 (308)
82 TIGR03438 probable methyltrans 93.1 0.22 4.8E-06 40.6 5.4 23 147-169 64-86 (301)
83 COG2227 UbiG 2-polyprenyl-3-me 93.0 0.091 2E-06 41.5 2.9 28 147-174 60-87 (243)
84 TIGR00406 prmA ribosomal prote 93.0 0.12 2.5E-06 41.9 3.6 45 121-168 137-181 (288)
85 KOG2904 Predicted methyltransf 93.0 0.24 5.2E-06 40.0 5.2 31 144-174 146-176 (328)
86 PRK00811 spermidine synthase; 92.6 0.17 3.8E-06 40.9 4.1 30 146-175 76-105 (283)
87 PF07757 AdoMet_MTase: Predict 92.5 0.25 5.4E-06 34.2 4.1 37 129-166 42-78 (112)
88 PF03848 TehB: Tellurite resis 92.5 0.22 4.8E-06 38.1 4.3 36 135-171 20-55 (192)
89 PRK05134 bifunctional 3-demeth 92.4 0.34 7.3E-06 37.6 5.4 23 146-168 48-70 (233)
90 PRK13168 rumA 23S rRNA m(5)U19 92.4 0.14 3.1E-06 44.0 3.5 36 134-170 286-321 (443)
91 PHA03411 putative methyltransf 92.3 0.21 4.6E-06 40.4 4.2 28 147-174 65-92 (279)
92 PRK00312 pcm protein-L-isoaspa 92.1 0.37 8E-06 36.9 5.2 33 136-169 69-101 (212)
93 TIGR00478 tly hemolysin TlyA f 92.0 0.36 7.7E-06 37.9 5.1 38 130-168 59-97 (228)
94 PRK00517 prmA ribosomal protei 91.9 0.17 3.7E-06 40.0 3.2 25 146-170 119-143 (250)
95 PF01209 Ubie_methyltran: ubiE 91.8 0.26 5.7E-06 38.7 4.2 31 144-174 45-76 (233)
96 PF08003 Methyltransf_9: Prote 91.8 0.17 3.7E-06 41.4 3.1 25 147-171 116-140 (315)
97 PLN02396 hexaprenyldihydroxybe 91.7 0.17 3.8E-06 41.8 3.2 21 147-167 132-152 (322)
98 PRK01544 bifunctional N5-gluta 91.6 0.23 4.9E-06 43.6 3.9 29 146-174 347-375 (506)
99 PRK14967 putative methyltransf 91.4 0.29 6.3E-06 37.9 4.0 25 144-168 34-58 (223)
100 PF00398 RrnaAD: Ribosomal RNA 91.4 0.37 8.1E-06 38.4 4.7 36 132-168 17-52 (262)
101 PRK13943 protein-L-isoaspartat 91.3 0.42 9.2E-06 39.5 5.1 35 135-170 70-104 (322)
102 PLN02585 magnesium protoporphy 90.9 0.24 5.2E-06 40.8 3.2 22 147-168 145-166 (315)
103 COG0030 KsgA Dimethyladenosine 90.6 0.66 1.4E-05 37.2 5.4 41 133-174 18-58 (259)
104 PRK01581 speE spermidine synth 90.4 0.4 8.7E-06 40.3 4.1 30 145-174 149-178 (374)
105 PLN02672 methionine S-methyltr 90.2 0.36 7.8E-06 46.0 4.1 27 148-174 120-146 (1082)
106 KOG1500 Protein arginine N-met 90.2 0.62 1.3E-05 38.9 5.0 26 140-167 173-198 (517)
107 PRK11873 arsM arsenite S-adeno 90.2 0.6 1.3E-05 37.1 4.9 30 144-173 75-105 (272)
108 KOG1271 Methyltransferases [Ge 90.1 0.49 1.1E-05 36.1 3.9 27 147-173 68-96 (227)
109 KOG1270 Methyltransferases [Co 90.1 0.2 4.2E-06 40.2 1.9 27 148-174 91-117 (282)
110 KOG1540 Ubiquinone biosynthesi 89.9 1.3 2.9E-05 35.5 6.4 24 147-170 101-124 (296)
111 PHA03412 putative methyltransf 89.8 0.41 8.9E-06 37.9 3.5 23 147-169 50-72 (241)
112 TIGR01983 UbiG ubiquinone bios 89.7 0.39 8.4E-06 36.9 3.3 24 147-170 46-69 (224)
113 KOG3010 Methyltransferase [Gen 89.6 0.3 6.5E-06 38.7 2.6 29 145-173 32-60 (261)
114 PF08123 DOT1: Histone methyla 89.5 0.82 1.8E-05 35.3 5.0 35 136-171 33-67 (205)
115 TIGR00417 speE spermidine synt 89.4 0.57 1.2E-05 37.5 4.2 29 146-174 72-100 (270)
116 TIGR00479 rumA 23S rRNA (uraci 89.2 0.52 1.1E-05 40.3 4.1 34 136-170 283-316 (431)
117 PRK10901 16S rRNA methyltransf 88.9 0.74 1.6E-05 39.4 4.8 34 137-171 236-269 (427)
118 PF01135 PCMT: Protein-L-isoas 88.7 0.71 1.5E-05 35.7 4.1 34 134-168 61-94 (209)
119 KOG1499 Protein arginine N-met 88.7 0.44 9.5E-06 39.6 3.0 25 146-170 60-84 (346)
120 PRK03522 rumB 23S rRNA methylu 88.6 0.52 1.1E-05 38.6 3.5 23 147-169 174-196 (315)
121 TIGR03840 TMPT_Se_Te thiopurin 88.4 1 2.2E-05 34.9 4.9 27 145-171 33-59 (213)
122 PRK04148 hypothetical protein; 87.7 1.2 2.7E-05 32.0 4.5 34 135-169 6-40 (134)
123 PRK11727 23S rRNA mA1618 methy 87.6 0.92 2E-05 37.5 4.4 29 146-174 114-142 (321)
124 PRK14902 16S rRNA methyltransf 87.5 0.96 2.1E-05 38.9 4.6 34 138-172 243-277 (444)
125 TIGR02085 meth_trns_rumB 23S r 87.3 0.67 1.5E-05 39.0 3.5 22 147-168 234-255 (374)
126 TIGR00095 RNA methyltransferas 87.2 1 2.3E-05 34.1 4.2 24 147-170 50-73 (189)
127 PRK13255 thiopurine S-methyltr 87.0 1.4 3.1E-05 34.2 4.9 27 144-170 35-61 (218)
128 PLN03075 nicotianamine synthas 86.7 1.7 3.7E-05 35.6 5.3 29 146-174 123-153 (296)
129 COG0357 GidB Predicted S-adeno 86.7 1.8 3.9E-05 33.7 5.3 30 147-176 68-97 (215)
130 PRK03612 spermidine synthase; 86.6 1 2.2E-05 39.7 4.3 29 146-175 297-326 (521)
131 COG2263 Predicted RNA methylas 86.4 0.77 1.7E-05 35.1 3.0 24 147-170 46-69 (198)
132 PF05219 DREV: DREV methyltran 86.2 1 2.2E-05 36.1 3.7 29 146-174 94-122 (265)
133 TIGR02143 trmA_only tRNA (urac 86.1 0.99 2.1E-05 37.7 3.8 24 148-171 199-222 (353)
134 PF03141 Methyltransf_29: Puta 86.0 0.67 1.4E-05 40.4 2.8 24 145-168 116-139 (506)
135 PRK10909 rsmD 16S rRNA m(2)G96 85.9 2.3 5E-05 32.6 5.5 23 147-169 54-76 (199)
136 PF02527 GidB: rRNA small subu 85.7 2.3 5E-05 32.2 5.3 28 149-176 51-78 (184)
137 COG2518 Pcm Protein-L-isoaspar 85.3 1.3 2.9E-05 34.3 3.9 34 135-169 62-95 (209)
138 TIGR00563 rsmB ribosomal RNA s 85.1 1.1 2.3E-05 38.4 3.7 32 137-169 230-261 (426)
139 PF09243 Rsm22: Mitochondrial 84.8 2.6 5.7E-05 33.9 5.6 38 135-173 23-60 (274)
140 TIGR01177 conserved hypothetic 84.7 2 4.3E-05 35.4 4.9 32 135-167 172-203 (329)
141 PF12147 Methyltransf_20: Puta 84.6 1.3 2.7E-05 36.3 3.6 26 146-171 135-160 (311)
142 KOG3045 Predicted RNA methylas 84.3 1.7 3.8E-05 35.0 4.2 56 107-162 137-196 (325)
143 KOG2899 Predicted methyltransf 84.2 1.1 2.3E-05 35.8 3.0 38 135-172 46-84 (288)
144 PRK05031 tRNA (uracil-5-)-meth 83.1 1.5 3.2E-05 36.8 3.6 24 148-171 208-231 (362)
145 KOG1541 Predicted protein carb 82.8 0.82 1.8E-05 36.0 1.8 32 134-166 37-70 (270)
146 PF10294 Methyltransf_16: Puta 82.1 2.2 4.7E-05 31.8 3.8 27 145-171 44-70 (173)
147 KOG2651 rRNA adenine N-6-methy 82.1 2 4.3E-05 36.5 3.9 26 144-169 151-176 (476)
148 PTZ00146 fibrillarin; Provisio 81.2 1.7 3.6E-05 35.5 3.1 33 136-168 120-154 (293)
149 KOG0820 Ribosomal RNA adenine 78.9 4 8.6E-05 33.2 4.5 37 134-171 47-83 (315)
150 PLN02823 spermine synthase 78.6 3.3 7.1E-05 34.5 4.1 30 146-175 103-132 (336)
151 COG5459 Predicted rRNA methyla 78.0 1.6 3.4E-05 36.7 2.0 42 135-177 103-144 (484)
152 PF05401 NodS: Nodulation prot 77.8 1.5 3.2E-05 33.8 1.7 33 140-173 38-70 (201)
153 COG0421 SpeE Spermidine syntha 77.8 3.9 8.5E-05 33.2 4.3 31 146-176 76-106 (282)
154 KOG3420 Predicted RNA methylas 75.9 1.9 4.1E-05 31.8 1.7 37 136-175 39-75 (185)
155 PLN02781 Probable caffeoyl-CoA 72.8 7 0.00015 30.6 4.4 27 144-170 66-92 (234)
156 cd00286 Tubulin_FtsZ Tubulin/F 72.6 7.6 0.00016 31.9 4.8 38 134-171 79-121 (328)
157 PRK00536 speE spermidine synth 72.3 5.5 0.00012 32.0 3.8 28 146-175 72-99 (262)
158 COG0293 FtsJ 23S rRNA methylas 72.3 11 0.00024 29.2 5.2 45 126-170 25-69 (205)
159 PLN02668 indole-3-acetate carb 71.5 13 0.00028 31.6 6.0 16 146-161 63-78 (386)
160 PRK14901 16S rRNA methyltransf 70.7 4.8 0.0001 34.6 3.3 30 139-169 246-275 (434)
161 cd02190 epsilon_tubulin The tu 70.3 8.6 0.00019 32.5 4.7 38 134-171 89-131 (379)
162 TIGR00446 nop2p NOL1/NOP2/sun 69.4 6.6 0.00014 31.3 3.7 27 144-170 69-95 (264)
163 COG3963 Phospholipid N-methylt 69.0 9.9 0.00021 28.7 4.2 37 131-168 34-70 (194)
164 COG1565 Uncharacterized conser 68.5 20 0.00043 30.2 6.3 50 114-168 50-99 (370)
165 cd06059 Tubulin The tubulin su 68.4 11 0.00023 31.9 4.9 38 134-171 79-121 (382)
166 PRK14904 16S rRNA methyltransf 68.2 6.4 0.00014 33.9 3.6 26 144-169 248-273 (445)
167 KOG2361 Predicted methyltransf 67.1 9.9 0.00021 30.3 4.1 28 149-176 74-101 (264)
168 PRK09273 hypothetical protein; 66.5 5.6 0.00012 30.9 2.6 28 149-176 65-92 (211)
169 PRK14903 16S rRNA methyltransf 65.9 13 0.00027 32.0 4.9 25 144-168 235-259 (431)
170 PF01596 Methyltransf_3: O-met 65.2 9.1 0.0002 29.5 3.5 25 146-170 45-69 (205)
171 COG1189 Predicted rRNA methyla 63.2 16 0.00034 29.0 4.5 35 133-167 66-100 (245)
172 PRK11760 putative 23S rRNA C24 62.8 18 0.00038 30.4 5.0 24 145-168 210-233 (357)
173 PF03291 Pox_MCEL: mRNA cappin 62.7 11 0.00023 31.4 3.8 48 119-169 38-85 (331)
174 PF01564 Spermine_synth: Sperm 62.5 8.8 0.00019 30.3 3.1 30 146-175 76-105 (246)
175 TIGR02987 met_A_Alw26 type II 60.1 6.9 0.00015 34.4 2.3 25 146-170 31-55 (524)
176 cd02188 gamma_tubulin Gamma-tu 58.8 18 0.00039 31.2 4.6 37 135-171 121-162 (431)
177 COG4883 Uncharacterized protei 57.5 67 0.0015 26.7 7.3 87 82-168 69-162 (500)
178 PF14314 Methyltrans_Mon: Viru 57.5 25 0.00053 32.2 5.3 44 129-174 307-350 (675)
179 PHA01634 hypothetical protein 56.8 10 0.00023 27.3 2.3 23 146-168 28-50 (156)
180 PLN02476 O-methyltransferase 56.3 17 0.00037 29.5 3.8 27 144-170 116-142 (278)
181 COG0248 GppA Exopolyphosphatas 55.8 11 0.00024 33.1 2.9 23 134-157 118-140 (492)
182 PF08704 GCD14: tRNA methyltra 55.7 22 0.00048 28.2 4.3 47 121-168 12-62 (247)
183 COG2519 GCD14 tRNA(1-methylade 55.3 41 0.00089 27.0 5.7 44 126-170 71-119 (256)
184 PRK04338 N(2),N(2)-dimethylgua 55.0 20 0.00043 30.4 4.2 22 148-169 59-80 (382)
185 PF00091 Tubulin: Tubulin/FtsZ 52.9 50 0.0011 25.3 5.8 41 134-174 114-159 (216)
186 TIGR01120 rpiB ribose 5-phosph 52.9 15 0.00033 26.7 2.8 24 153-176 62-85 (143)
187 KOG3191 Predicted N6-DNA-methy 52.7 14 0.00031 28.3 2.6 22 147-168 44-65 (209)
188 PTZ00387 epsilon tubulin; Prov 52.4 26 0.00056 30.6 4.5 38 134-171 121-163 (465)
189 KOG2940 Predicted methyltransf 52.1 10 0.00023 30.2 1.9 23 146-168 72-94 (325)
190 TIGR00689 rpiB_lacA_lacB sugar 51.7 16 0.00035 26.6 2.7 24 153-176 61-84 (144)
191 KOG1661 Protein-L-isoaspartate 51.7 12 0.00026 29.3 2.1 22 145-166 81-102 (237)
192 KOG2183 Prolylcarboxypeptidase 51.7 25 0.00055 30.4 4.2 28 144-171 163-191 (492)
193 PF02502 LacAB_rpiB: Ribose/Ga 51.7 13 0.00029 26.8 2.3 25 152-176 61-85 (140)
194 PRK15128 23S rRNA m(5)C1962 me 51.2 14 0.00031 31.4 2.7 21 146-166 220-240 (396)
195 KOG4058 Uncharacterized conser 51.0 19 0.00042 26.7 3.0 33 135-168 62-94 (199)
196 KOG1975 mRNA cap methyltransfe 50.6 18 0.00038 30.3 3.0 40 119-167 99-138 (389)
197 PRK11783 rlmL 23S rRNA m(2)G24 49.6 15 0.00033 33.7 2.8 21 147-167 539-559 (702)
198 KOG4589 Cell division protein 49.5 44 0.00095 25.9 4.8 32 139-170 62-94 (232)
199 PF11312 DUF3115: Protein of u 49.3 67 0.0014 26.6 6.2 70 98-168 32-108 (315)
200 PF05958 tRNA_U5-meth_tr: tRNA 49.2 15 0.00033 30.6 2.6 42 131-174 183-224 (352)
201 cd02189 delta_tubulin The tubu 49.1 33 0.00072 29.7 4.7 37 135-171 117-158 (446)
202 cd06060 misato Human Misato sh 48.0 33 0.00072 30.2 4.5 38 134-171 141-182 (493)
203 PF08100 Dimerisation: Dimeris 47.4 14 0.0003 21.9 1.5 27 35-61 1-33 (51)
204 PF01170 UPF0020: Putative RNA 47.0 41 0.00088 25.1 4.4 38 134-172 17-54 (179)
205 COG4122 Predicted O-methyltran 46.5 30 0.00064 27.1 3.6 31 144-175 57-87 (219)
206 PF03602 Cons_hypoth95: Conser 45.9 21 0.00045 26.9 2.7 23 147-169 43-65 (183)
207 KOG2187 tRNA uracil-5-methyltr 45.8 22 0.00047 31.4 3.0 31 144-174 381-411 (534)
208 PRK11031 guanosine pentaphosph 45.5 19 0.00042 31.5 2.7 20 137-157 124-143 (496)
209 PF02541 Ppx-GppA: Ppx/GppA ph 45.1 22 0.00049 28.4 2.9 13 145-157 111-123 (285)
210 COG4820 EutJ Ethanolamine util 45.0 11 0.00025 29.3 1.1 11 148-158 142-152 (277)
211 PRK05571 ribose-5-phosphate is 44.7 25 0.00054 25.8 2.8 23 154-176 65-87 (148)
212 cd02187 beta_tubulin The tubul 44.7 36 0.00079 29.2 4.2 37 135-171 120-161 (425)
213 PLN00221 tubulin alpha chain; 43.1 35 0.00077 29.6 4.0 38 134-171 122-164 (450)
214 PRK12615 galactose-6-phosphate 42.4 26 0.00057 26.3 2.7 24 153-176 63-86 (171)
215 PRK13256 thiopurine S-methyltr 42.3 64 0.0014 25.3 5.0 29 144-172 41-69 (226)
216 COG0698 RpiB Ribose 5-phosphat 42.3 23 0.00051 26.0 2.3 27 150-176 61-87 (151)
217 PF05724 TPMT: Thiopurine S-me 42.2 33 0.00071 26.6 3.3 25 144-168 35-59 (218)
218 KOG0822 Protein kinase inhibit 41.7 68 0.0015 28.7 5.4 55 107-168 333-389 (649)
219 TIGR02261 benz_CoA_red_D benzo 41.7 33 0.00072 27.6 3.3 12 144-155 95-106 (262)
220 PRK11783 rlmL 23S rRNA m(2)G24 41.3 43 0.00092 30.8 4.4 36 132-168 176-212 (702)
221 COG5023 Tubulin [Cytoskeleton] 41.1 55 0.0012 27.9 4.6 36 135-170 121-161 (443)
222 PF12692 Methyltransf_17: S-ad 40.6 1.5E+02 0.0032 21.9 7.3 55 119-176 4-58 (160)
223 PF02384 N6_Mtase: N-6 DNA Met 40.5 44 0.00096 26.9 4.0 24 144-167 44-67 (311)
224 PF05577 Peptidase_S28: Serine 40.5 55 0.0012 27.9 4.7 32 139-171 105-137 (434)
225 PRK10854 exopolyphosphatase; P 40.1 23 0.0005 31.2 2.4 13 145-157 136-148 (513)
226 COG3897 Predicted methyltransf 39.2 70 0.0015 24.9 4.5 30 138-167 71-100 (218)
227 PTZ00215 ribose 5-phosphate is 38.8 34 0.00073 25.1 2.7 24 153-176 67-90 (151)
228 PLN00222 tubulin gamma chain; 38.6 60 0.0013 28.2 4.7 37 135-171 123-164 (454)
229 PF09959 DUF2193: Uncharacteri 38.2 1.4E+02 0.003 25.7 6.5 81 82-162 68-152 (499)
230 TIGR01119 lacB galactose-6-pho 37.9 34 0.00075 25.7 2.7 23 154-176 64-86 (171)
231 TIGR00241 CoA_E_activ CoA-subs 37.7 41 0.00089 26.3 3.3 13 156-168 125-137 (248)
232 PF14881 Tubulin_3: Tubulin do 37.6 95 0.0021 23.4 5.1 40 134-173 64-107 (180)
233 PF02784 Orn_Arg_deC_N: Pyrido 37.4 71 0.0015 24.9 4.6 13 148-160 197-209 (251)
234 TIGR03192 benz_CoA_bzdQ benzoy 37.3 39 0.00084 27.7 3.1 11 145-155 124-134 (293)
235 KOG3851 Sulfide:quinone oxidor 36.9 50 0.0011 27.8 3.6 30 146-175 38-69 (446)
236 KOG1501 Arginine N-methyltrans 36.8 28 0.00061 30.4 2.3 25 146-170 66-90 (636)
237 PRK08622 galactose-6-phosphate 36.8 37 0.0008 25.5 2.7 23 154-176 64-86 (171)
238 TIGR00824 EIIA-man PTS system, 36.3 76 0.0017 21.8 4.1 38 136-173 50-88 (116)
239 PF03514 GRAS: GRAS domain fam 35.9 54 0.0012 27.7 3.9 41 135-176 100-147 (374)
240 KOG1447 GTP-specific succinyl- 34.7 43 0.00092 27.3 2.9 31 147-177 309-343 (412)
241 KOG3987 Uncharacterized conser 34.3 23 0.0005 27.8 1.3 25 144-168 109-134 (288)
242 PF05891 Methyltransf_PK: AdoM 34.3 23 0.0005 27.7 1.3 22 146-167 55-76 (218)
243 KOG4300 Predicted methyltransf 33.8 90 0.0019 24.6 4.4 17 145-161 75-91 (252)
244 COG1924 Activator of 2-hydroxy 33.5 49 0.0011 28.1 3.2 24 145-168 228-275 (396)
245 TIGR02259 benz_CoA_red_A benzo 33.3 50 0.0011 28.4 3.2 11 145-155 266-276 (432)
246 TIGR03706 exo_poly_only exopol 33.2 48 0.001 26.9 3.1 10 148-157 127-136 (300)
247 TIGR00308 TRM1 tRNA(guanine-26 33.2 58 0.0013 27.6 3.7 29 148-176 46-74 (374)
248 PF06406 StbA: StbA protein; 32.8 1.3E+02 0.0029 24.5 5.6 52 120-171 246-297 (318)
249 COG4262 Predicted spermidine s 32.7 71 0.0015 27.4 4.0 27 145-172 288-314 (508)
250 PF02475 Met_10: Met-10+ like- 32.3 50 0.0011 25.4 2.9 27 144-170 99-125 (200)
251 PRK13660 hypothetical protein; 31.8 59 0.0013 24.6 3.2 29 150-178 45-79 (182)
252 PTZ00010 tubulin beta chain; P 31.5 60 0.0013 28.1 3.5 37 135-171 121-162 (445)
253 PF11144 DUF2920: Protein of u 31.4 1.6E+02 0.0035 25.3 5.9 36 136-171 172-208 (403)
254 KOG1709 Guanidinoacetate methy 31.4 1.2E+02 0.0025 24.1 4.7 48 126-175 83-130 (271)
255 cd00006 PTS_IIA_man PTS_IIA, P 31.3 92 0.002 21.4 3.9 37 136-172 49-86 (122)
256 PRK12613 galactose-6-phosphate 31.0 43 0.00094 24.3 2.2 22 155-176 62-83 (141)
257 KOG3924 Putative protein methy 31.0 47 0.001 28.4 2.7 31 136-166 180-212 (419)
258 COG4567 Response regulator con 30.9 2.3E+02 0.005 21.2 6.3 64 113-176 16-87 (182)
259 TIGR01118 lacA galactose-6-pho 30.9 43 0.00094 24.3 2.2 22 155-176 63-84 (141)
260 COG2159 Predicted metal-depend 30.1 90 0.002 25.3 4.2 32 145-176 156-198 (293)
261 KOG1663 O-methyltransferase [S 30.0 76 0.0016 25.1 3.5 31 145-176 72-102 (237)
262 COG0500 SmtA SAM-dependent met 29.7 52 0.0011 21.7 2.5 12 150-161 52-63 (257)
263 PF02608 Bmp: Basic membrane p 29.5 65 0.0014 26.1 3.3 31 146-176 61-91 (306)
264 cd06353 PBP1_BmpA_Med_like Per 29.0 75 0.0016 25.0 3.5 31 146-176 57-87 (258)
265 PF12757 DUF3812: Protein of u 28.9 27 0.00059 24.7 0.8 12 146-157 56-67 (126)
266 PLN02589 caffeoyl-CoA O-methyl 28.7 75 0.0016 25.2 3.4 26 145-170 78-103 (247)
267 PF00549 Ligase_CoA: CoA-ligas 28.7 88 0.0019 23.0 3.5 32 146-177 35-80 (153)
268 PRK08621 galactose-6-phosphate 28.5 45 0.00098 24.2 1.9 22 155-176 63-84 (142)
269 PF13450 NAD_binding_8: NAD(P) 28.1 73 0.0016 19.6 2.7 23 153-176 2-25 (68)
270 PRK07535 methyltetrahydrofolat 27.7 83 0.0018 25.2 3.5 41 115-158 9-49 (261)
271 COG1077 MreB Actin-like ATPase 27.4 32 0.0007 28.6 1.1 23 135-157 141-164 (342)
272 PRK13917 plasmid segregation p 24.8 3.2E+02 0.0069 22.6 6.6 38 134-171 279-316 (344)
273 PRK10100 DNA-binding transcrip 24.6 1.2E+02 0.0025 23.4 3.8 29 148-176 55-87 (216)
274 cd00740 MeTr MeTr subgroup of 24.0 98 0.0021 24.6 3.3 38 120-159 14-51 (252)
275 PF06792 UPF0261: Uncharacteri 23.3 2.3E+02 0.005 24.4 5.5 45 121-169 72-117 (403)
276 PF08557 Lipid_DES: Sphingolip 22.9 29 0.00063 19.4 0.1 10 163-172 21-30 (39)
277 cd06840 PLPDE_III_Bif_AspK_Dap 22.8 1E+02 0.0022 25.8 3.3 12 148-159 206-217 (368)
278 COG2265 TrmA SAM-dependent met 22.6 83 0.0018 27.2 2.8 40 134-174 282-321 (432)
279 COG0489 Mrp ATPases involved i 22.4 1.9E+02 0.0042 23.0 4.7 39 137-178 158-197 (265)
280 PRK11475 DNA-binding transcrip 22.0 2.8E+02 0.006 21.1 5.4 26 151-176 46-74 (207)
281 PTZ00335 tubulin alpha chain; 21.7 1.4E+02 0.003 26.0 4.0 37 135-171 123-164 (448)
282 PLN02661 Putative thiazole syn 21.7 1.5E+02 0.0032 25.0 4.0 28 149-176 94-122 (357)
283 PF07091 FmrO: Ribosomal RNA m 21.5 53 0.0011 26.3 1.3 49 123-171 76-130 (251)
284 cd06829 PLPDE_III_CANSDC Type 20.8 49 0.0011 27.3 1.1 12 148-159 189-200 (346)
285 PRK05354 arginine decarboxylas 20.8 1.4E+02 0.0031 27.2 4.0 12 148-159 284-295 (634)
286 PLN00220 tubulin beta chain; P 20.6 2E+02 0.0043 24.9 4.7 37 135-171 121-162 (447)
287 PLN00124 succinyl-CoA ligase [ 20.3 1.5E+02 0.0033 25.6 3.9 31 147-177 318-352 (422)
288 cd06836 PLPDE_III_ODC_DapDC_li 20.2 52 0.0011 27.6 1.1 12 148-159 208-219 (379)
289 KOG3456 NADH:ubiquinone oxidor 20.0 1E+02 0.0023 21.3 2.3 46 116-161 46-91 (120)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.93 E-value=2.1e-25 Score=175.77 Aligned_cols=129 Identities=22% Similarity=0.351 Sum_probs=114.0
Q ss_pred CCCCceecchhccccCCCCCCCChHHHHHHhcChhhhhhhhhHHHHHhcCCcchhhhccCCchhhhhccChHHHHHHHHH
Q 037090 46 SVQRLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQS 125 (178)
Q Consensus 46 ~~~~~y~~t~~s~~L~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~~~~~F~~~ 125 (178)
|++++|+||++|+.|+.+++..++..++.+...+..+++|.+|.+++++|.++|+.++ |.++|+|+.++|+..+.|+.+
T Consensus 1 ~~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~-g~~~~~~~~~~~~~~~~f~~~ 79 (241)
T PF00891_consen 1 KEGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAF-GTPFFEYLEEDPELAKRFNAA 79 (241)
T ss_dssp SSTEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHH-SS-HHHHHHCSHHHHHHHHHH
T ss_pred CCCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhc-CCcHHHhhhhChHHHHHHHHH
Confidence 4678999999999887766423688888887788899999999999999999999999 888999999999999999999
Q ss_pred HHhhhHHhH-HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 126 MHNHTTIVM-KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 126 M~~~~~~~~-~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
|...+.... +.+++.+| |++.++|||||||+|+++.+++++||+++++|+
T Consensus 80 m~~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~ 130 (241)
T PF00891_consen 80 MAEYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVF 130 (241)
T ss_dssp HHHHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEE
T ss_pred HHhhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceee
Confidence 999998887 88899999 999999999999999999999999999999885
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.85 E-value=7.6e-21 Score=154.09 Aligned_cols=159 Identities=42% Similarity=0.608 Sum_probs=142.7
Q ss_pred cccHHHHHHHHHHHhhHHHHHHHHHHHhC-------------------------------C----------------CCC
Q 037090 16 RDEQDFLLAMELASGTILPMTIKSAIELD-------------------------------R----------------SVQ 48 (178)
Q Consensus 16 ~~~~~~~~l~~~~~g~~~s~~L~~a~elg-------------------------------R----------------~~~ 48 (178)
+..+...++++++.++..+++|++||||| | ..+
T Consensus 2 ~e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~~p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~~ 81 (342)
T KOG3178|consen 2 EENEASLRAMRLANGFALPMVLKAACELGVFDILANAGSPSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVGGE 81 (342)
T ss_pred chhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCCCHHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeecce
Confidence 34556678999999999999999999999 1 123
Q ss_pred CceecchhccccCCCCCCCChHHHHHHhcChhhhhhhhhHHHHHhcCCcchhhhccCCchhhhhccChHHHHHHHHHHHh
Q 037090 49 RLYGLAPVSKYFVPNEEGVSLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLFNQSMHN 128 (178)
Q Consensus 49 ~~y~~t~~s~~L~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~~~~~F~~~M~~ 128 (178)
.|+++|+++++.++..+.|++++++...++..++.|..+.++++++..+|..++ |+..|+|...++.....|+.+|..
T Consensus 82 -~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~-G~~l~~~~~~~~~~~~~~~~sm~~ 159 (342)
T KOG3178|consen 82 -VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAH-GMMLGGYGGADERFSKDFNGSMSF 159 (342)
T ss_pred -eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCcccc-chhhhhhcccccccHHHHHHHHHH
Confidence 899999999877444334899999998899999999999999999999999999 888999999999999999999999
Q ss_pred hhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 129 HTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
.+....+.+++.|.+|++....||||||.|..+..++.+||+++++.|
T Consensus 160 l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~inf 207 (342)
T KOG3178|consen 160 LSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINF 207 (342)
T ss_pred HHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeec
Confidence 999998899999998999999999999999999999999999999986
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.54 E-value=6e-14 Score=114.30 Aligned_cols=121 Identities=15% Similarity=0.277 Sum_probs=80.6
Q ss_pred CCCCceecchhccccCCCCCCC---ChHHHHHHhcChhhhhhhhhHHHHHhcCCcchhhhccCCchhhhhccChHHHHHH
Q 037090 46 SVQRLYGLAPVSKYFVPNEEGV---SLAPTLLIIQDKVNMDSWSCVKDALLEGLVPFMKAHNGMDGFAVAAKDEKINNLF 122 (178)
Q Consensus 46 ~~~~~y~~t~~s~~L~~~~~~~---~~~~~v~~~~~~~~~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~~~p~~~~~F 122 (178)
+.+++|+||+.++.++.+++.. ++.+++.+. .......|.+|.++++ ++++|...+ ++....++.. .|
T Consensus 55 ~~~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r-~~~~~~~~~------~~~~~~~~~~-~~ 125 (306)
T TIGR02716 55 LEDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVR-GQKNFKGQV------PYPPVTREDN-LY 125 (306)
T ss_pred ecCCcEecchhHHhhccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhc-CCccccccc------CCCCCCHHHH-Hh
Confidence 3568999999998665544311 112333332 1123356899999998 444554333 2223344443 34
Q ss_pred HHHHH-hhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 123 NQSMH-NHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 123 ~~~M~-~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
...|. .......+.+++..+ +++..+|||||||+|.+++.+++++|+++++++
T Consensus 126 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~ 179 (306)
T TIGR02716 126 FEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTIL 179 (306)
T ss_pred HHHHHHhcchhHHHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEE
Confidence 44444 444455577888888 888899999999999999999999999998875
No 4
>PRK06922 hypothetical protein; Provisional
Probab=97.82 E-value=7.2e-05 Score=66.46 Aligned_cols=69 Identities=10% Similarity=0.052 Sum_probs=53.7
Q ss_pred CchhhhhccChHHHHHHHHHHHhhhHHh--HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 106 MDGFAVAAKDEKINNLFNQSMHNHTTIV--MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 106 ~~~~e~~~~~p~~~~~F~~~M~~~~~~~--~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
..+|+++..+++...+|.+.|....... .......++ +.+..+|+|||||+|.++..+++++|+.+.+.
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtG 447 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYG 447 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE
Confidence 4789999999999999998887754432 122234555 66678999999999999999999999877654
No 5
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.33 E-value=0.00089 Score=53.08 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=37.8
Q ss_pred HHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 121 LFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 121 ~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
.|.+......+.. ..+++.++ .....+|+|||||+|.++..+++++|+.+.+
T Consensus 6 ~y~~~~~~~~~~~-~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~ 57 (255)
T PRK14103 6 VYLAFADHRGRPF-YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIE 57 (255)
T ss_pred HHHHHHhHhhCHH-HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEE
Confidence 3444333333333 56777777 6667899999999999999999999986654
No 6
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.28 E-value=0.00066 Score=51.28 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=37.8
Q ss_pred HHHH-HHhhhHHhHHH-HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 122 FNQS-MHNHTTIVMKE-ILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 122 F~~~-M~~~~~~~~~~-~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
|..+ |...++..... +++..+ .....+|+|||+|+|.++..+++++|+.+.+.
T Consensus 6 f~~~~~~~~~~~~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~ 60 (187)
T PRK08287 6 FLRGEKVPMTKEEVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTA 60 (187)
T ss_pred hccCCCCCCchHHHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEE
Confidence 4443 44445544433 345555 66678999999999999999999999877654
No 7
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.10 E-value=0.0022 Score=44.41 Aligned_cols=38 Identities=11% Similarity=0.034 Sum_probs=30.2
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 136 EILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
.+++.++ .....+|+|||+|.|.++..+++++|+.+.+
T Consensus 10 ~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~ 47 (124)
T TIGR02469 10 LTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVY 47 (124)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEE
Confidence 3455555 5555799999999999999999999986544
No 8
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.03 E-value=0.003 Score=49.99 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=33.8
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
...+++.++ ..+..+|+|||||.|.++..+++++|..+.+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~ 59 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARIT 59 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEE
Confidence 456777777 7777899999999999999999999986654
No 9
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=96.91 E-value=0.0034 Score=48.56 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=43.4
Q ss_pred chhhhhccChHHHHHHHHHHHhhhHHhHHHHHHhcCC-CCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090 107 DGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKG-FERLNQFVDVADGLGENKNILLTKISIIS 172 (178)
Q Consensus 107 ~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~-~~~~~~vVDVGGg~G~~~~~i~~~~P~l~ 172 (178)
..|+.+...+.....+...|..........+++..+. .....+|+|||||+|.++..++++...+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~ 81 (219)
T TIGR02021 15 QRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVK 81 (219)
T ss_pred HHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEE
Confidence 4566677766666677777754433333445544431 33467999999999999999998754433
No 10
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0024 Score=51.84 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=34.3
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
+-+++.++ .....+|+|+|||.|.+++.+++++|+.+.+++
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmv 188 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLV 188 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEE
Confidence 56778888 554459999999999999999999998877654
No 11
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.78 E-value=0.003 Score=53.17 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=32.4
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
.-+++.+| .....+|+|+|||+|.++..+++++|..+.+.+
T Consensus 218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~v 258 (378)
T PRK15001 218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFV 258 (378)
T ss_pred HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEE
Confidence 44666666 333368999999999999999999999876643
No 12
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=96.77 E-value=0.004 Score=48.41 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=35.2
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
+..++...+ ......|||+|||.|.-..-+++|||....+
T Consensus 19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~ 58 (257)
T COG4106 19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVIT 58 (257)
T ss_pred HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEe
Confidence 467888888 8888999999999999999999999997643
No 13
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=96.43 E-value=0.01 Score=45.13 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=25.4
Q ss_pred CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 147 LNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
..+|+|||||+|..+..+++++|..+.+-
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~g 74 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTL 74 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEE
Confidence 57899999999999999999999876553
No 14
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.39 E-value=0.0073 Score=48.53 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=30.6
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISL 173 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~ 173 (178)
+..+++.++ ..+..+|+|||+|+|.++..++++.+++.+
T Consensus 31 ~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~~v~a 69 (272)
T PRK00274 31 LDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAAKVTA 69 (272)
T ss_pred HHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCCcEEE
Confidence 345566666 666679999999999999999999875443
No 15
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.26 E-value=0.0054 Score=45.74 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=25.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 146 RLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
...+|+|+|+|+|.++..+++++|+.+.+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~ 59 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVT 59 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEE
Confidence 35689999999999999999999997644
No 16
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.24 E-value=0.018 Score=43.80 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=30.3
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 137 ILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
+++..+ .....+|+|||+|+|.++..+++..|..+.+.
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~ 69 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIA 69 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 455555 66667999999999999999999888765543
No 17
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.20 E-value=0.012 Score=49.01 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
..+++.++ .....+|+|+|||.|.++..+++++|..+.+.
T Consensus 186 ~lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~ 225 (342)
T PRK09489 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTL 225 (342)
T ss_pred HHHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEE
Confidence 34455555 33335799999999999999999999877554
No 18
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=96.09 E-value=0.012 Score=47.37 Aligned_cols=40 Identities=10% Similarity=0.108 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
.+.+++..+ ..+..+|+|||||-|.++..++++| +++++-
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~g 90 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTG 90 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEE
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEE
Confidence 466777777 8888899999999999999999999 666543
No 19
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.07 E-value=0.014 Score=44.78 Aligned_cols=36 Identities=14% Similarity=0.032 Sum_probs=28.4
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 137 ILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
|.+.++ - +..+|+|||||+|..+..+++++|+.+.+
T Consensus 33 ~~~~~~-~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~ 68 (202)
T PRK00121 33 WAELFG-N-DAPIHLEIGFGKGEFLVEMAKANPDINFI 68 (202)
T ss_pred HHHHcC-C-CCCeEEEEccCCCHHHHHHHHHCCCccEE
Confidence 445554 2 45789999999999999999999986544
No 20
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.03 E-value=0.015 Score=46.06 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISL 173 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~ 173 (178)
...+++..+ ..+..+|+|||+|.|.++..++++.+.+-+
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~ 56 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKKVTA 56 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCcEEE
Confidence 355666666 667789999999999999999999986433
No 21
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.02 E-value=0.016 Score=44.79 Aligned_cols=29 Identities=14% Similarity=0.006 Sum_probs=23.5
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090 144 FERLNQFVDVADGLGENKNILLTKISIIS 172 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~ 172 (178)
..+..+|+|||||+|.++..++++.+++.
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~v~ 89 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGAKVV 89 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCCEEE
Confidence 34457899999999999999998876543
No 22
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=95.99 E-value=0.0085 Score=45.28 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=24.9
Q ss_pred CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 147 LNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
..+|+|||||+|..+..+++.+|..+.+.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~ 71 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTL 71 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEE
Confidence 46899999999999999999999866543
No 23
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.98 E-value=0.022 Score=46.07 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=34.0
Q ss_pred HhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090 132 IVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISL 173 (178)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~ 173 (178)
...+.+++.+. +.+..+|+|||||-|.+++..+++| +++.
T Consensus 59 ~k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V 98 (283)
T COG2230 59 AKLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTV 98 (283)
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEE
Confidence 33567788888 9999999999999999999999999 5543
No 24
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.96 E-value=0.017 Score=45.79 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=25.1
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090 136 EILETYKGFERLNQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
.+++.++ .+..+|+|||||+|.++..++++..++
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g~~v 69 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAELGHQV 69 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHcCCEE
Confidence 3444443 334689999999999999999985443
No 25
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.94 E-value=0.021 Score=44.32 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=29.6
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc-CCCeEE
Q 037090 135 KEILETYKGFERLNQFVDVADGLGENKNILLTKI-SIISLN 174 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~~ 174 (178)
..+++..+ .....+|+|||||+|..+..+++++ |..+.+
T Consensus 35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~ 74 (231)
T TIGR02752 35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVI 74 (231)
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEE
Confidence 34555555 6666899999999999999999986 555443
No 26
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=95.93 E-value=0.018 Score=48.63 Aligned_cols=37 Identities=8% Similarity=0.019 Sum_probs=28.8
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 137 ILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
+++.+. -.....+||||+|+|.++..+++++|+...+
T Consensus 114 ~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~i 150 (390)
T PRK14121 114 FLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFI 150 (390)
T ss_pred HHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEE
Confidence 444444 3345689999999999999999999987544
No 27
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.81 E-value=0.036 Score=43.68 Aligned_cols=38 Identities=11% Similarity=0.088 Sum_probs=28.1
Q ss_pred hHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090 130 TTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
.+..+..+++.++ .....+|+|||||+|.++..+.++.
T Consensus 27 q~~~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~ 64 (251)
T PRK10258 27 QRQSADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRERG 64 (251)
T ss_pred HHHHHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHcC
Confidence 3344556666666 4456789999999999998887754
No 28
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=95.80 E-value=0.015 Score=44.39 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=26.9
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090 135 KEILETYKGFERLNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
+.+++.++ .....+|+|||||.|.++..++++.-
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~g~ 53 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAANGF 53 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHCCC
Confidence 45666666 54557999999999999999998743
No 29
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=95.76 E-value=0.048 Score=42.02 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=24.7
Q ss_pred CCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 147 LNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
..+|+|||||.|.++..+++.+|..+.+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~ 62 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFI 62 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEE
Confidence 3689999999999999999999987644
No 30
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=95.69 E-value=0.062 Score=41.47 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=29.3
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC-CCeEEE
Q 037090 136 EILETYKGFERLNQFVDVADGLGENKNILLTKIS-IISLNT 175 (178)
Q Consensus 136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P-~l~~~v 175 (178)
.+++.+. ..+..+|+|||||.|.++..+++++| ..+.+.
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~ 81 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVG 81 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEE
Confidence 3455554 44557899999999999999999998 455443
No 31
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=95.69 E-value=0.029 Score=42.60 Aligned_cols=38 Identities=13% Similarity=0.026 Sum_probs=31.1
Q ss_pred HHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 138 LETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 138 ~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
+.... ..+..+++|||+|+|..+++++..+|..+.+-|
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AI 64 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAI 64 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEE
Confidence 34444 566789999999999999999999999887643
No 32
>PRK04457 spermidine synthase; Provisional
Probab=95.58 E-value=0.019 Score=45.92 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=27.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 146 RLNQFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
+.++|+|||+|.|.++..+++++|+.+.+++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~V 96 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAV 96 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEE
Confidence 3468999999999999999999999887764
No 33
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.57 E-value=0.028 Score=43.31 Aligned_cols=29 Identities=10% Similarity=0.280 Sum_probs=24.5
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 146 RLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
+..+|+|||||+|..+..+++..|..+.+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~ 71 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIY 71 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEE
Confidence 45689999999999999999988876543
No 34
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.56 E-value=0.025 Score=45.08 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
+..+++..+ ..+..+|+|||+|.|.++..++++..+
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~~~ 53 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRAKK 53 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhCCE
Confidence 455666665 666689999999999999999998543
No 35
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.52 E-value=0.022 Score=41.08 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=24.5
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhc----CCCeEE
Q 037090 144 FERLNQFVDVADGLGENKNILLTKI----SIISLN 174 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~----P~l~~~ 174 (178)
-.+..+|||+|+|.|+++..++..+ |.++.+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~ 57 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVL 57 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEE
Confidence 4567899999999999999999933 555543
No 36
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=95.43 E-value=0.024 Score=44.80 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=25.1
Q ss_pred CCCCeEEEecCCccHHHHHHHHh--cCCCeEEE
Q 037090 145 ERLNQFVDVADGLGENKNILLTK--ISIISLNT 175 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~~~i~~~--~P~l~~~v 175 (178)
.+..+|+|||||+|..+..+++. +|..+.+.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~g 87 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIA 87 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEE
Confidence 34578999999999999999884 67777654
No 37
>PRK06202 hypothetical protein; Provisional
Probab=95.42 E-value=0.07 Score=41.57 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=20.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhc
Q 037090 145 ERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
.+..+|+|||||+|.++..+++..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~ 82 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWA 82 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHH
Confidence 455789999999999998888653
No 38
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=95.41 E-value=0.048 Score=41.11 Aligned_cols=33 Identities=9% Similarity=0.234 Sum_probs=26.1
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090 137 ILETYKGFERLNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
+.+.+....+..+|+|||+|+|.++..+++++.
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~ 55 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVG 55 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhC
Confidence 444454345667999999999999999999873
No 39
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=95.39 E-value=0.044 Score=42.84 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=25.3
Q ss_pred CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 147 LNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
..+|+|+|||+|.++..+++.+|+.+.+.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~ 116 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTA 116 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEE
Confidence 35899999999999999999999876543
No 40
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.35 E-value=0.027 Score=44.08 Aligned_cols=30 Identities=10% Similarity=0.016 Sum_probs=24.4
Q ss_pred CCCCeEEEecCCccHHHHHHHHhc--CCCeEE
Q 037090 145 ERLNQFVDVADGLGENKNILLTKI--SIISLN 174 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~~~i~~~~--P~l~~~ 174 (178)
.+..+|+|||||+|..+..+++++ |+.+.+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~ 83 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKII 83 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEE
Confidence 345689999999999999999975 666554
No 41
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=95.18 E-value=0.034 Score=44.16 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=30.3
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 137 ILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
++..+......++|+|+|.|.|..+..+++++|+.+...
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~ 73 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVG 73 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEE
Confidence 444433244578999999999999999999999876654
No 42
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=95.17 E-value=0.054 Score=41.35 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=29.0
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC-CeEE
Q 037090 136 EILETYKGFERLNQFVDVADGLGENKNILLTKISI-ISLN 174 (178)
Q Consensus 136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~-l~~~ 174 (178)
.+++... ..+..+|+|||||.|..+..+++++|. .+.+
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~ 68 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVT 68 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEE
Confidence 3444444 445679999999999999999999986 4443
No 43
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=95.13 E-value=0.037 Score=45.63 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=22.1
Q ss_pred CCeEEEecCCccHHHHHHHHhcCC
Q 037090 147 LNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
.++|+|||||.|.++..++++.|.
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~ 146 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK 146 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC
Confidence 479999999999999999999876
No 44
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=95.08 E-value=0.062 Score=42.50 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=24.7
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 146 RLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
...+|+|||||+|.++..+++..+..+.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~ 79 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVV 79 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEE
Confidence 46789999999999999999999944443
No 45
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=95.05 E-value=0.039 Score=42.03 Aligned_cols=32 Identities=22% Similarity=0.119 Sum_probs=24.5
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090 136 EILETYKGFERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
.+++.++ .....+|+|||||+|.++..++++.
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~g 52 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLAG 52 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHCC
Confidence 4455555 4345689999999999999999864
No 46
>PLN02244 tocopherol O-methyltransferase
Probab=95.01 E-value=0.063 Score=44.53 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHhc
Q 037090 145 ERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
....+|+|||||.|..+..+++++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~ 140 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY 140 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc
Confidence 456789999999999999999987
No 47
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.00 E-value=0.077 Score=42.18 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=24.5
Q ss_pred CCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 147 LNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
..+|+|+|+|+|.++..+++++|..+.+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~ 114 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELH 114 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEE
Confidence 3589999999999999999999987654
No 48
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=94.99 E-value=0.038 Score=44.73 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=25.4
Q ss_pred CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 147 LNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
..+|+|+|+|+|.++..+++++|+.+.+-
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~a 150 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDA 150 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999999876543
No 49
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=94.97 E-value=0.066 Score=41.33 Aligned_cols=35 Identities=11% Similarity=0.201 Sum_probs=28.4
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090 135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
..+++.++ ..+..+|+|||+|+|.++..+++..+.
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~ 101 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGR 101 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCC
Confidence 45556666 666789999999999999999998764
No 50
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.95 E-value=0.071 Score=42.39 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=26.7
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 144 FERLNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
..+..+|+|||+|+|..+..+++.+|..+.+.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~ 137 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTA 137 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEE
Confidence 34556899999999999999999998876543
No 51
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.90 E-value=0.033 Score=45.62 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=25.0
Q ss_pred CeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 148 NQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 148 ~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
.+|+|+|||+|.++..+++++|+.+.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~a 162 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDA 162 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEE
Confidence 5899999999999999999999877553
No 52
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=94.86 E-value=0.033 Score=40.18 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=22.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090 145 ERLNQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
....+|+|||||.|.++..++++.+.+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~ 47 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEV 47 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEE
Confidence 445699999999999999997775543
No 53
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=94.80 E-value=0.079 Score=42.34 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
...+++.++ ..+..+|+|||||.|..+..+++++
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~ 74 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY 74 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc
Confidence 356777776 7777899999999999999998776
No 54
>PRK04266 fibrillarin; Provisional
Probab=94.69 E-value=0.052 Score=42.52 Aligned_cols=34 Identities=3% Similarity=0.053 Sum_probs=27.6
Q ss_pred hcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 140 TYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 140 ~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
.++ ..+..+|+|+|+|+|..+..+++..| .+.|+
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~--~g~V~ 100 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVE--EGVVY 100 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcC--CCeEE
Confidence 355 66778999999999999999999987 44443
No 55
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=94.62 E-value=0.076 Score=41.17 Aligned_cols=62 Identities=11% Similarity=0.164 Sum_probs=35.7
Q ss_pred CchhhhhccChHHHHHHHHHHHhhh----HHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090 106 MDGFAVAAKDEKINNLFNQSMHNHT----TIVMKEILETYKGFERLNQFVDVADGLGENKNILLTK 167 (178)
Q Consensus 106 ~~~~e~~~~~p~~~~~F~~~M~~~~----~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~ 167 (178)
..-++.+.++|+....|+.+-+... ....+.+++.+..-.+..+|.|.|||.+.++.++.++
T Consensus 28 ~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~ 93 (219)
T PF05148_consen 28 EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK 93 (219)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC
Confidence 3455677889987777766655532 2234666666552344568999999999999877544
No 56
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=94.62 E-value=0.08 Score=43.58 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=22.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCC
Q 037090 146 RLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
+.++|+|||||+|.++..++...++
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~ 145 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAK 145 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC
Confidence 3479999999999999999988875
No 57
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.60 E-value=0.061 Score=42.39 Aligned_cols=56 Identities=11% Similarity=0.197 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhhHH----hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 118 INNLFNQSMHNHTTI----VMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 118 ~~~~F~~~M~~~~~~----~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
..++|.......-.. ...+++...+ ...+++++|+|||+|..+.+|...--++.|+
T Consensus 94 ~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGv 153 (287)
T COG4976 94 YAERFDHILVDKLGYSVPELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADRLTGV 153 (287)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhhccCC
Confidence 345666665543222 2344555555 4458899999999999999998887777664
No 58
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=94.50 E-value=0.077 Score=41.66 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=24.5
Q ss_pred CCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090 147 LNQFVDVADGLGENKNILLTKISIISL 173 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~ 173 (178)
...+|+||+|.|.+..++++++|+...
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nf 75 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNF 75 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCE
Confidence 368999999999999999999999754
No 59
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=94.47 E-value=0.14 Score=43.19 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=27.5
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090 135 KEILETYKGFERLNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
..+++..+ .....+|+|||||.|.++..+++++.
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~g 190 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHYG 190 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHCC
Confidence 45566666 66678999999999999999998763
No 60
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=94.46 E-value=0.084 Score=43.05 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
...+++..+ .....+|+|||+|.|.+...++++.+++
T Consensus 25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~~V 61 (294)
T PTZ00338 25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAKKV 61 (294)
T ss_pred HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCCcE
Confidence 455666666 6666799999999999999999986554
No 61
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=94.43 E-value=0.052 Score=43.83 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=24.4
Q ss_pred CeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 148 NQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 148 ~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
.+|+|||+|+|.++..+++.+|+.+.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~ 142 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVI 142 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEE
Confidence 589999999999999999999987654
No 62
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=94.37 E-value=0.07 Score=46.08 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIIS 172 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~ 172 (178)
.+.+++..+ ..+..+|+|||||+|.++..+++++.++-
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~~v~ 63 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAGQVI 63 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCCEEE
Confidence 455666666 55567999999999999999999876543
No 63
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=94.36 E-value=0.079 Score=45.25 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=25.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 146 RLNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
+..+|+|||+|+|.++..+++++|..+.+-
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtA 280 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRA 280 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEE
Confidence 345899999999999999999999877543
No 64
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=94.32 E-value=0.19 Score=38.74 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=25.8
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090 136 EILETYKGFERLNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
.+.+.|..+....+|||||+|+|.++..++++.+
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~ 74 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIG 74 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcC
Confidence 3444444235567999999999999999999874
No 65
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.26 E-value=0.021 Score=44.09 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=21.8
Q ss_pred CeEEEecCCccHHHHHHHHhcCC
Q 037090 148 NQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 148 ~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
.-++|||||-|.+++.+..+||+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPd 84 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPD 84 (249)
T ss_pred ceEEeeccCccchhhhccccCcc
Confidence 46999999999999999999999
No 66
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=94.13 E-value=0.11 Score=41.66 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=22.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCC
Q 037090 146 RLNQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
+..+|+|||||+|.++..+++.+|..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~ 110 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEI 110 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccc
Confidence 34689999999999999999998864
No 67
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=94.09 E-value=0.07 Score=46.75 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=25.4
Q ss_pred CCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 147 LNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
..+|+|||+|+|.+++.+++++|+.+.+-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~a 167 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIA 167 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEE
Confidence 35899999999999999999999877653
No 68
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=94.09 E-value=0.049 Score=44.06 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=23.0
Q ss_pred eEEEecCCccHHHHHHHHhcCCCeE
Q 037090 149 QFVDVADGLGENKNILLTKISIISL 173 (178)
Q Consensus 149 ~vVDVGGg~G~~~~~i~~~~P~l~~ 173 (178)
+|+|||.|+|..+++++++.|+.+.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V 137 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEV 137 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeE
Confidence 7999999999999999999997554
No 69
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=94.00 E-value=0.13 Score=44.44 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=28.1
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090 135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIIS 172 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~ 172 (178)
..+++.++ ..+..+|+|||||+|..+..+++++ +.+
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~ 291 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVH 291 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCE
Confidence 45666666 6666799999999999999988876 444
No 70
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=93.97 E-value=0.18 Score=42.02 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=28.2
Q ss_pred HHHhcCCCC-CCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 137 ILETYKGFE-RLNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 137 ~~~~~~~~~-~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
+++... +. ...+|+|||||+|.++..+++++|..+.+.
T Consensus 104 ~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~~~~~~~Vtg 142 (340)
T PLN02490 104 ALEPAD-LSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTI 142 (340)
T ss_pred HHhhcc-cCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEE
Confidence 444444 42 346899999999999999999988765443
No 71
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=93.89 E-value=0.12 Score=44.58 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=35.6
Q ss_pred chhhhhccChHHHHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090 107 DGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 107 ~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
..||.++++|..-..|.+|+.. .. ....+.-..-.+.+.|+|||+|+|-++...+++.
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~---al-~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~ 208 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE---AL-KDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAG 208 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH---HH-HHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTT
T ss_pred ccHhhHhcCHHHHHHHHHHHHH---HH-HhhhhhccccccceEEEEeCCCccHHHHHHHHHH
Confidence 4689999999888788877532 11 1222221101135799999999999998776654
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.84 E-value=0.14 Score=39.21 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=26.5
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090 135 KEILETYKGFERLNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
..+++..+ ..+..+|+|||+|+|..+..+++..+
T Consensus 62 ~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~ 95 (205)
T PRK13944 62 AMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIE 95 (205)
T ss_pred HHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcC
Confidence 34455555 55567999999999999999998875
No 73
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=93.76 E-value=0.099 Score=42.69 Aligned_cols=47 Identities=21% Similarity=0.133 Sum_probs=33.0
Q ss_pred HHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090 121 LFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 121 ~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
.|..+-...+.+. -.+++.+. . +.++++|||||+|.++++.++--..
T Consensus 140 AFGTG~HpTT~lc-L~~Le~~~-~-~g~~vlDvGcGSGILaIAa~kLGA~ 186 (300)
T COG2264 140 AFGTGTHPTTSLC-LEALEKLL-K-KGKTVLDVGCGSGILAIAAAKLGAK 186 (300)
T ss_pred ccCCCCChhHHHH-HHHHHHhh-c-CCCEEEEecCChhHHHHHHHHcCCc
Confidence 4654444444444 34677776 4 6689999999999999998876543
No 74
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.71 E-value=0.094 Score=42.37 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=23.3
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090 137 ILETYKGFERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
++...+ .....+|+|||||.|.++..++++.
T Consensus 112 ~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~g 142 (287)
T PRK12335 112 VLEAVQ-TVKPGKALDLGCGQGRNSLYLALLG 142 (287)
T ss_pred HHHHhh-ccCCCCEEEeCCCCCHHHHHHHHCC
Confidence 444444 3334589999999999999998864
No 75
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=93.68 E-value=0.41 Score=38.18 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=22.8
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhc-CCC
Q 037090 144 FERLNQFVDVADGLGENKNILLTKI-SII 171 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~-P~l 171 (178)
..+..+|+|||||+|.++..+++++ |..
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~ 99 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDG 99 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCC
Confidence 4456799999999999999999886 443
No 76
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=93.59 E-value=0.82 Score=36.57 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccH----HHHHHHHhcCC
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGE----NKNILLTKISI 170 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~----~~~~i~~~~P~ 170 (178)
.+.+++.-+ ..+..+|+|+|||+|. +++.+++.+|.
T Consensus 88 lp~l~~~~~-~~~~~ri~d~GCgtGee~YslA~~l~e~~~~ 127 (264)
T smart00138 88 LPLLIASRR-HGRRVRIWSAGCSTGEEPYSLAMLLAETLPK 127 (264)
T ss_pred hHHHHHhcC-CCCCEEEEeccccCChHHHHHHHHHHHHhhh
Confidence 344444333 3444689999999997 56667777764
No 77
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.50 E-value=0.21 Score=38.00 Aligned_cols=34 Identities=9% Similarity=0.113 Sum_probs=26.0
Q ss_pred HhcCCCCCCCeEEEecCCccHHHHHHHHhc-CCCeE
Q 037090 139 ETYKGFERLNQFVDVADGLGENKNILLTKI-SIISL 173 (178)
Q Consensus 139 ~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~ 173 (178)
...+ .....+|+|+|+|+|.++..+++.. |..+.
T Consensus 34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v 68 (198)
T PRK00377 34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKV 68 (198)
T ss_pred HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEE
Confidence 3445 5566799999999999999998875 44443
No 78
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=93.47 E-value=0.13 Score=41.91 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=31.0
Q ss_pred HHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090 121 LFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 121 ~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
.|..+-...+++... +++.+. .. .++|+|||+|+|.++++.++.-.
T Consensus 139 AFGTG~H~TT~lcl~-~l~~~~-~~-g~~vLDvG~GSGILaiaA~klGA 184 (295)
T PF06325_consen 139 AFGTGHHPTTRLCLE-LLEKYV-KP-GKRVLDVGCGSGILAIAAAKLGA 184 (295)
T ss_dssp SS-SSHCHHHHHHHH-HHHHHS-ST-TSEEEEES-TTSHHHHHHHHTTB
T ss_pred cccCCCCHHHHHHHH-HHHHhc-cC-CCEEEEeCCcHHHHHHHHHHcCC
Confidence 466555555555544 566665 43 46999999999999999888654
No 79
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.40 E-value=0.23 Score=38.38 Aligned_cols=35 Identities=9% Similarity=0.220 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
...+++..+ ..+..+|+|||+|+|.++..+++..+
T Consensus 65 ~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~ 99 (212)
T PRK13942 65 VAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVG 99 (212)
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcC
Confidence 345666666 77778999999999999988888754
No 80
>PRK05785 hypothetical protein; Provisional
Probab=93.32 E-value=0.13 Score=40.22 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=20.2
Q ss_pred CCeEEEecCCccHHHHHHHHhc
Q 037090 147 LNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
..+|+|||||+|.++..+++++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~ 73 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF 73 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc
Confidence 4689999999999999999987
No 81
>PLN02366 spermidine synthase
Probab=93.13 E-value=0.15 Score=41.91 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=22.1
Q ss_pred CCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090 145 ERLNQFVDVADGLGENKNILLTKISIIS 172 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~ 172 (178)
.+.++|+|||||.|..+.++++ +|.+.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk-~~~v~ 116 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIAR-HSSVE 116 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCCC
Confidence 3467999999999999999985 57654
No 82
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=93.07 E-value=0.22 Score=40.56 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.7
Q ss_pred CCeEEEecCCccHHHHHHHHhcC
Q 037090 147 LNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
..+|||+|||+|.....++++.|
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~ 86 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALR 86 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhc
Confidence 35799999999999999999886
No 83
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=93.02 E-value=0.091 Score=41.46 Aligned_cols=28 Identities=18% Similarity=-0.050 Sum_probs=23.5
Q ss_pred CCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 147 LNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
..+|+|||||-|.++..+++.--.+.|+
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga~Vtgi 87 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGASVTGI 87 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCCeeEEe
Confidence 3679999999999999999988666553
No 84
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=93.00 E-value=0.12 Score=41.92 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=29.8
Q ss_pred HHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090 121 LFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 121 ~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
.|..+....++.. -.+++.+. .. .++|+|||||+|.++..+++..
T Consensus 137 aFgtG~h~tt~l~-l~~l~~~~-~~-g~~VLDvGcGsG~lai~aa~~g 181 (288)
T TIGR00406 137 AFGTGTHPTTSLC-LEWLEDLD-LK-DKNVIDVGCGSGILSIAALKLG 181 (288)
T ss_pred cccCCCCHHHHHH-HHHHHhhc-CC-CCEEEEeCCChhHHHHHHHHcC
Confidence 3555444444443 33555555 43 4799999999999998887654
No 85
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=92.98 E-value=0.24 Score=40.04 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=26.0
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 144 FERLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
+.....++|+|+|+|.++..++..-|..+.+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~ 176 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVT 176 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEE
Confidence 4445589999999999999999999966554
No 86
>PRK00811 spermidine synthase; Provisional
Probab=92.57 E-value=0.17 Score=40.86 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=22.7
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 146 RLNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
+.++|+|||||.|..+.+++++.+..+.++
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~ 105 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITL 105 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEE
Confidence 457899999999999999996534334443
No 87
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.49 E-value=0.25 Score=34.23 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=25.2
Q ss_pred hhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHH
Q 037090 129 HTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLT 166 (178)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~ 166 (178)
.++..+.-|-+.|. -.....+||||||.|.+.-.+.+
T Consensus 42 IAAyLi~LW~~~~~-~~~~~~FVDlGCGNGLLV~IL~~ 78 (112)
T PF07757_consen 42 IAAYLIELWRDMYG-EQKFQGFVDLGCGNGLLVYILNS 78 (112)
T ss_pred HHHHHHHHHhcccC-CCCCCceEEccCCchHHHHHHHh
Confidence 34444555555555 34566899999999998776554
No 88
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=92.46 E-value=0.22 Score=38.08 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=25.9
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090 135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
..+++..+ .-+..+++|+|||.|..+.-++++-=++
T Consensus 20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~G~~V 55 (192)
T PF03848_consen 20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQGFDV 55 (192)
T ss_dssp HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHTT-EE
T ss_pred HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHCCCeE
Confidence 34666666 5556799999999999999999875443
No 89
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=92.38 E-value=0.34 Score=37.58 Aligned_cols=23 Identities=17% Similarity=-0.010 Sum_probs=19.7
Q ss_pred CCCeEEEecCCccHHHHHHHHhc
Q 037090 146 RLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
...+|+|||+|.|.++..+++..
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~ 70 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG 70 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC
Confidence 45689999999999999888764
No 90
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=92.37 E-value=0.14 Score=44.01 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
...+++..+ ..+..+|+|+|+|+|.++..++++...
T Consensus 286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~~~ 321 (443)
T PRK13168 286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQAAE 321 (443)
T ss_pred HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhCCE
Confidence 344455444 445579999999999999999988643
No 91
>PHA03411 putative methyltransferase; Provisional
Probab=92.33 E-value=0.21 Score=40.36 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=23.4
Q ss_pred CCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 147 LNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
..+|+|+|+|+|.++..++++.|..+.+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~ 92 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIV 92 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEE
Confidence 3589999999999999999988765543
No 92
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=92.08 E-value=0.37 Score=36.91 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=25.1
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090 136 EILETYKGFERLNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
.+++..+ ..+..+|+|||+|+|..+..+++...
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~ 101 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR 101 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC
Confidence 3445555 66678999999999999887777654
No 93
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=92.04 E-value=0.36 Score=37.95 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=28.4
Q ss_pred hHHhHHHHHHhcCCC-CCCCeEEEecCCccHHHHHHHHhc
Q 037090 130 TTIVMKEILETYKGF-ERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 130 ~~~~~~~~~~~~~~~-~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
+......+++.++ . -+.++++|||+|+|.++..++++-
T Consensus 59 ~~~kL~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~g 97 (228)
T TIGR00478 59 GGEKLKEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQKG 97 (228)
T ss_pred hHHHHHHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHcC
Confidence 3344456777766 3 245789999999999999999873
No 94
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=91.88 E-value=0.17 Score=40.03 Aligned_cols=25 Identities=16% Similarity=-0.073 Sum_probs=20.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCC
Q 037090 146 RLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
...+|+|||+|+|.+++.+++..+.
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~ 143 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK 143 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC
Confidence 4578999999999999987776554
No 95
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=91.80 E-value=0.26 Score=38.73 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=19.7
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhc-CCCeEE
Q 037090 144 FERLNQFVDVADGLGENKNILLTKI-SIISLN 174 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~~ 174 (178)
.....+|+|||||+|.++..++++. |..+.+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~ 76 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVV 76 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEE
Confidence 3445699999999999999999886 444443
No 96
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=91.80 E-value=0.17 Score=41.39 Aligned_cols=25 Identities=12% Similarity=0.009 Sum_probs=22.5
Q ss_pred CCeEEEecCCccHHHHHHHHhcCCC
Q 037090 147 LNQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
.++|+|||||.|.++...+++.|..
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~ 140 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKS 140 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCE
Confidence 4799999999999999999998863
No 97
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=91.74 E-value=0.17 Score=41.76 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=18.4
Q ss_pred CCeEEEecCCccHHHHHHHHh
Q 037090 147 LNQFVDVADGLGENKNILLTK 167 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~ 167 (178)
..+|+|||||.|.++..+++.
T Consensus 132 g~~ILDIGCG~G~~s~~La~~ 152 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARM 152 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHc
Confidence 458999999999999988864
No 98
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=91.56 E-value=0.23 Score=43.57 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=25.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 146 RLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
+...+||||+|.|.++..+++++|+...+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~i 375 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFI 375 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEE
Confidence 35799999999999999999999997543
No 99
>PRK14967 putative methyltransferase; Provisional
Probab=91.41 E-value=0.29 Score=37.92 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=20.9
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhc
Q 037090 144 FERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
.....+|+|+|+|+|.++..+++..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~ 58 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG 58 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC
Confidence 4445799999999999999988763
No 100
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=91.37 E-value=0.37 Score=38.42 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=30.7
Q ss_pred HhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090 132 IVMKEILETYKGFERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
..++.+++..+ ..+...|+|||.|.|.+..+++++.
T Consensus 17 ~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~ 52 (262)
T PF00398_consen 17 NIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG 52 (262)
T ss_dssp HHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc
Confidence 34567777777 7778899999999999999999988
No 101
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=91.33 E-value=0.42 Score=39.48 Aligned_cols=35 Identities=11% Similarity=0.231 Sum_probs=27.7
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090 135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
..+++..+ ..+..+|+|||+|+|.++..+++..+.
T Consensus 70 a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~ 104 (322)
T PRK13943 70 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGE 104 (322)
T ss_pred HHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCC
Confidence 34555555 566679999999999999999998864
No 102
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=90.92 E-value=0.24 Score=40.79 Aligned_cols=22 Identities=18% Similarity=-0.041 Sum_probs=19.7
Q ss_pred CCeEEEecCCccHHHHHHHHhc
Q 037090 147 LNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
..+|+|||||+|.++..++++.
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g 166 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEG 166 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCC
Confidence 4689999999999999999874
No 103
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=90.64 E-value=0.66 Score=37.17 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=33.8
Q ss_pred hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 133 VMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 133 ~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
.+..+++..+ ..+..+|+.||.|.|++...++++...+.++
T Consensus 18 v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~ai 58 (259)
T COG0030 18 VIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAI 58 (259)
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEE
Confidence 3567777776 6667899999999999999999998886553
No 104
>PRK01581 speE spermidine synthase; Validated
Probab=90.44 E-value=0.4 Score=40.35 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=22.2
Q ss_pred CCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 145 ERLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
.+.++|++||||.|..+.++++..|..+.+
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It 178 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVD 178 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEE
Confidence 345799999999999998888643333443
No 105
>PLN02672 methionine S-methyltransferase
Probab=90.25 E-value=0.36 Score=45.97 Aligned_cols=27 Identities=11% Similarity=-0.006 Sum_probs=24.0
Q ss_pred CeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 148 NQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 148 ~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
.+|+|||+|+|.+++.+++++|..+++
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~ 146 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVY 146 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEE
Confidence 589999999999999999999976544
No 106
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=90.24 E-value=0.62 Score=38.88 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=19.6
Q ss_pred hcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090 140 TYKGFERLNQFVDVADGLGENKNILLTK 167 (178)
Q Consensus 140 ~~~~~~~~~~vVDVGGg~G~~~~~i~~~ 167 (178)
..| |.+ +.|||||+|+|.++.-.+.+
T Consensus 173 ~sD-F~~-kiVlDVGaGSGILS~FAaqA 198 (517)
T KOG1500|consen 173 HSD-FQD-KIVLDVGAGSGILSFFAAQA 198 (517)
T ss_pred ccc-cCC-cEEEEecCCccHHHHHHHHh
Confidence 444 653 78999999999998765554
No 107
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=90.18 E-value=0.6 Score=37.14 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=23.0
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhc-CCCeE
Q 037090 144 FERLNQFVDVADGLGENKNILLTKI-SIISL 173 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~~ 173 (178)
.....+|+|||+|.|..+..+++.. |..+.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v 105 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKV 105 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEE
Confidence 4556799999999999988877765 44343
No 108
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=90.07 E-value=0.49 Score=36.14 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=21.7
Q ss_pred CCeEEEecCCccHHHHHHHHh-cCC-CeE
Q 037090 147 LNQFVDVADGLGENKNILLTK-ISI-ISL 173 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~-~P~-l~~ 173 (178)
..+|||+|+|.|+++..+++. ||+ |.|
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~G 96 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTG 96 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccc
Confidence 349999999999999998875 455 544
No 109
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=90.05 E-value=0.2 Score=40.19 Aligned_cols=27 Identities=19% Similarity=0.021 Sum_probs=23.1
Q ss_pred CeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 148 NQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 148 ~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
..|+|||||.|.++..+++---.+.|+
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GI 117 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGI 117 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEee
Confidence 569999999999999999887766654
No 110
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=89.86 E-value=1.3 Score=35.51 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=22.0
Q ss_pred CCeEEEecCCccHHHHHHHHhcCC
Q 037090 147 LNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
.-.+|||+||+|..+..|++.-+.
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s 124 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKS 124 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhcc
Confidence 468999999999999999998877
No 111
>PHA03412 putative methyltransferase; Provisional
Probab=89.81 E-value=0.41 Score=37.90 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.7
Q ss_pred CCeEEEecCCccHHHHHHHHhcC
Q 037090 147 LNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
..+|||+|+|+|.++..++++.+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~ 72 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMM 72 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcc
Confidence 46899999999999999999865
No 112
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=89.72 E-value=0.39 Score=36.86 Aligned_cols=24 Identities=21% Similarity=-0.038 Sum_probs=20.8
Q ss_pred CCeEEEecCCccHHHHHHHHhcCC
Q 037090 147 LNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
..+|+|||+|+|.++..+++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~ 69 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGAN 69 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCe
Confidence 568999999999999998887655
No 113
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=89.59 E-value=0.3 Score=38.68 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=23.4
Q ss_pred CCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090 145 ERLNQFVDVADGLGENKNILLTKISIISL 173 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~ 173 (178)
++.+.++|||+|+|+.++.+++.|-.+=+
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k~VIa 60 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYKEVIA 60 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhhhhee
Confidence 34459999999999998889888776544
No 114
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=89.52 E-value=0.82 Score=35.31 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=23.1
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090 136 EILETYKGFERLNQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
.+++.+. ..+..+++|||.|.|......+-.++--
T Consensus 33 ~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~ 67 (205)
T PF08123_consen 33 KILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCK 67 (205)
T ss_dssp HHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--S
T ss_pred HHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCc
Confidence 4555555 6667899999999999999888777643
No 115
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=89.43 E-value=0.57 Score=37.53 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=22.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 146 RLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
+.++|++||||.|..+..+++..|..+.+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~ 100 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKAT 100 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEE
Confidence 34599999999999999998765444443
No 116
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=89.22 E-value=0.52 Score=40.27 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=25.7
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090 136 EILETYKGFERLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
.+.+... ..+..+|+|+|+|.|.++..+++....
T Consensus 283 ~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~~~ 316 (431)
T TIGR00479 283 RALEALE-LQGEELVVDAYCGVGTFTLPLAKQAKS 316 (431)
T ss_pred HHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhCCE
Confidence 3444444 555679999999999999999987643
No 117
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=88.91 E-value=0.74 Score=39.42 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=26.8
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090 137 ILETYKGFERLNQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
++...+ .....+|+|+|+|+|..+..++++.|..
T Consensus 236 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~ 269 (427)
T PRK10901 236 AATLLA-PQNGERVLDACAAPGGKTAHILELAPQA 269 (427)
T ss_pred HHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCC
Confidence 334444 4456789999999999999999999863
No 118
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=88.68 E-value=0.71 Score=35.73 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
...+++..+ .....+|+|||+|+|..+..+++-.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lv 94 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLV 94 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhc
Confidence 355677777 7778899999999999999888765
No 119
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=88.66 E-value=0.44 Score=39.59 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=21.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCC
Q 037090 146 RLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
+.++|+|||||+|.+++-.+++.+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~ 84 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGAR 84 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcc
Confidence 4589999999999999988888743
No 120
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=88.61 E-value=0.52 Score=38.61 Aligned_cols=23 Identities=17% Similarity=-0.051 Sum_probs=20.0
Q ss_pred CCeEEEecCCccHHHHHHHHhcC
Q 037090 147 LNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
..+|+|+|||+|.++..++++..
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~ 196 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGM 196 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCC
Confidence 36899999999999999998543
No 121
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=88.44 E-value=1 Score=34.85 Aligned_cols=27 Identities=7% Similarity=-0.156 Sum_probs=21.7
Q ss_pred CCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090 145 ERLNQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
....+|+|+|||.|..+..++++-=++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~V 59 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHRV 59 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCeE
Confidence 344699999999999999999874333
No 122
>PRK04148 hypothetical protein; Provisional
Probab=87.72 E-value=1.2 Score=32.04 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=23.2
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccH-HHHHHHHhcC
Q 037090 135 KEILETYKGFERLNQFVDVADGLGE-NKNILLTKIS 169 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~-~~~~i~~~~P 169 (178)
..+.+.++ -.+..+++|||.|.|. ++..+.+..-
T Consensus 6 ~~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~G~ 40 (134)
T PRK04148 6 EFIAENYE-KGKNKKIVELGIGFYFKVAKKLKESGF 40 (134)
T ss_pred HHHHHhcc-cccCCEEEEEEecCCHHHHHHHHHCCC
Confidence 34555565 3334689999999996 7777776543
No 123
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=87.64 E-value=0.92 Score=37.50 Aligned_cols=29 Identities=7% Similarity=-0.106 Sum_probs=24.2
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 146 RLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
...+++|||+|.|.....++.+.|..+.+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~ 142 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFV 142 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEE
Confidence 35689999999999988888888876644
No 124
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=87.45 E-value=0.96 Score=38.88 Aligned_cols=34 Identities=6% Similarity=0.020 Sum_probs=26.0
Q ss_pred HHhcCCCCCCCeEEEecCCccHHHHHHHHhc-CCCe
Q 037090 138 LETYKGFERLNQFVDVADGLGENKNILLTKI-SIIS 172 (178)
Q Consensus 138 ~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l~ 172 (178)
...++ ..+..+|+|+|+|.|..+..++++. |..+
T Consensus 243 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~ 277 (444)
T PRK14902 243 APALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGK 277 (444)
T ss_pred HHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE
Confidence 33444 5556789999999999999999986 4433
No 125
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=87.29 E-value=0.67 Score=38.99 Aligned_cols=22 Identities=18% Similarity=0.027 Sum_probs=19.2
Q ss_pred CCeEEEecCCccHHHHHHHHhc
Q 037090 147 LNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
..+|+|+|+|+|.++..++.+.
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~ 255 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPD 255 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcC
Confidence 3689999999999999999654
No 126
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=87.19 E-value=1 Score=34.11 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=21.6
Q ss_pred CCeEEEecCCccHHHHHHHHhcCC
Q 037090 147 LNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
..+++|+++|+|.++.+++++...
T Consensus 50 g~~vLDLfaGsG~lglea~srga~ 73 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK 73 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC
Confidence 468999999999999999999764
No 127
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=86.97 E-value=1.4 Score=34.19 Aligned_cols=27 Identities=7% Similarity=-0.162 Sum_probs=21.7
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090 144 FERLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
.....+|+|+|||.|..+..++++-=+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~~ 61 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGHE 61 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCCe
Confidence 344569999999999999999986433
No 128
>PLN03075 nicotianamine synthase; Provisional
Probab=86.73 E-value=1.7 Score=35.56 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=21.1
Q ss_pred CCCeEEEecCCccHHHHH--HHHhcCCCeEE
Q 037090 146 RLNQFVDVADGLGENKNI--LLTKISIISLN 174 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~--i~~~~P~l~~~ 174 (178)
+.++|+|||+|.|-+... .++.+|+.+++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~ 153 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFH 153 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEE
Confidence 568999999999955444 44567886654
No 129
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=86.73 E-value=1.8 Score=33.71 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=27.1
Q ss_pred CCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 147 LNQFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
.++++|||-|-|.=++-++=.+|+++.+++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLl 97 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLL 97 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEE
Confidence 589999999999999999999999996664
No 130
>PRK03612 spermidine synthase; Provisional
Probab=86.63 E-value=1 Score=39.68 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=22.9
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCC-CeEEE
Q 037090 146 RLNQFVDVADGLGENKNILLTKISI-ISLNT 175 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~-l~~~v 175 (178)
+.++|+|||||.|..+.++++ +|. .+.++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~ 326 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTL 326 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CCCcCeEEE
Confidence 457899999999999999986 666 34443
No 131
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.36 E-value=0.77 Score=35.08 Aligned_cols=24 Identities=13% Similarity=-0.101 Sum_probs=20.7
Q ss_pred CCeEEEecCCccHHHHHHHHhcCC
Q 037090 147 LNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
.++|+|+|+|+|.+++..+-.-|+
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~ 69 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGAS 69 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCc
Confidence 468999999999999998877665
No 132
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=86.16 E-value=1 Score=36.10 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=24.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 146 RLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
+..+++|||.|.|.....++..|.++-+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aT 122 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYAT 122 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEee
Confidence 35689999999999999999988886543
No 133
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=86.14 E-value=0.99 Score=37.71 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=20.6
Q ss_pred CeEEEecCCccHHHHHHHHhcCCC
Q 037090 148 NQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 148 ~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
..|+|+++|+|.++..+++....+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v 222 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRV 222 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEE
Confidence 369999999999999999887543
No 134
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=86.01 E-value=0.67 Score=40.38 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.0
Q ss_pred CCCCeEEEecCCccHHHHHHHHhc
Q 037090 145 ERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
.+..+++|||||.|.++..++++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~ 139 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERN 139 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCC
Confidence 356789999999999999998875
No 135
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=85.92 E-value=2.3 Score=32.64 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=19.2
Q ss_pred CCeEEEecCCccHHHHHHHHhcC
Q 037090 147 LNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
..+|+|+|+|+|.++.+.+.+..
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a 76 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA 76 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC
Confidence 46899999999999998766653
No 136
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=85.65 E-value=2.3 Score=32.25 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=25.2
Q ss_pred eEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 149 QFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 149 ~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
+++|||-|-|.=++-++=.+|+++.+++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~Lv 78 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLV 78 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEE
Confidence 7999999999999999999999998775
No 137
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.25 E-value=1.3 Score=34.28 Aligned_cols=34 Identities=12% Similarity=0.329 Sum_probs=27.4
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090 135 KEILETYKGFERLNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
..+++..+ .....+|++||+|+|..+.-+++---
T Consensus 62 A~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~ 95 (209)
T COG2518 62 ARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG 95 (209)
T ss_pred HHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC
Confidence 44667777 77789999999999999988877544
No 138
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=85.14 E-value=1.1 Score=38.39 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=25.6
Q ss_pred HHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090 137 ILETYKGFERLNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 137 ~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
++...+ .....+|+|+|+|.|..+..+++..|
T Consensus 230 ~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~ 261 (426)
T TIGR00563 230 VATWLA-PQNEETILDACAAPGGKTTHILELAP 261 (426)
T ss_pred HHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcC
Confidence 334444 44557999999999999999999987
No 139
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=84.84 E-value=2.6 Score=33.88 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=28.7
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090 135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISL 173 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~ 173 (178)
.++-...|+|. -.+|+|+|.|.|..+-++.+.+|++.-
T Consensus 23 ~El~~r~p~f~-P~~vLD~GsGpGta~wAa~~~~~~~~~ 60 (274)
T PF09243_consen 23 SELRKRLPDFR-PRSVLDFGSGPGTALWAAREVWPSLKE 60 (274)
T ss_pred HHHHHhCcCCC-CceEEEecCChHHHHHHHHHHhcCcee
Confidence 44544555343 358999999999999999999996653
No 140
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=84.68 E-value=2 Score=35.42 Aligned_cols=32 Identities=9% Similarity=-0.016 Sum_probs=24.2
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090 135 KEILETYKGFERLNQFVDVADGLGENKNILLTK 167 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~ 167 (178)
..+++... +.+..+|+|+|||+|.++.+.+..
T Consensus 172 ~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~ 203 (329)
T TIGR01177 172 RAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM 203 (329)
T ss_pred HHHHHHhC-CCCcCEEEECCCCCCHHHHHHHHh
Confidence 44444445 666779999999999999887664
No 141
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=84.60 E-value=1.3 Score=36.25 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=23.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCC
Q 037090 146 RLNQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
...+||||.||+|.+...+++++|..
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~ 160 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPER 160 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCC
Confidence 44689999999999999999999984
No 142
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=84.34 E-value=1.7 Score=34.98 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=39.3
Q ss_pred chhhhhccChHHHHHHHHHHHhhhH----HhHHHHHHhcCCCCCCCeEEEecCCccHHHH
Q 037090 107 DGFAVAAKDEKINNLFNQSMHNHTT----IVMKEILETYKGFERLNQFVDVADGLGENKN 162 (178)
Q Consensus 107 ~~~e~~~~~p~~~~~F~~~M~~~~~----~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~ 162 (178)
..++.+.++|.....|+.+.+.... ...+.+++.+..-++...|-|+|||.+.++.
T Consensus 137 ~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 137 EAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS 196 (325)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh
Confidence 4567788999888888887766432 1235556555423556789999999998875
No 143
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=84.19 E-value=1.1 Score=35.77 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=29.4
Q ss_pred HHHHHhcC-CCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090 135 KEILETYK-GFERLNQFVDVADGLGENKNILLTKISIIS 172 (178)
Q Consensus 135 ~~~~~~~~-~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~ 172 (178)
+..+..++ .|-+.+.++||||-.|.++..|++.|-..+
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~ 84 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRR 84 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccce
Confidence 44555555 366678899999999999999999986543
No 144
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=83.10 E-value=1.5 Score=36.82 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=20.9
Q ss_pred CeEEEecCCccHHHHHHHHhcCCC
Q 037090 148 NQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 148 ~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
..++|+++|+|.++..+++...++
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v 231 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRV 231 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEE
Confidence 469999999999999999887644
No 145
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=82.85 E-value=0.82 Score=35.97 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=20.9
Q ss_pred HHHHHHhcCCCC--CCCeEEEecCCccHHHHHHHH
Q 037090 134 MKEILETYKGFE--RLNQFVDVADGLGENKNILLT 166 (178)
Q Consensus 134 ~~~~~~~~~~~~--~~~~vVDVGGg~G~~~~~i~~ 166 (178)
....++..+ +. ....|+|||||+|.-+..+..
T Consensus 37 ~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~ 70 (270)
T KOG1541|consen 37 AERALELLA-LPGPKSGLILDIGCGSGLSGSVLSD 70 (270)
T ss_pred HHHHHHHhh-CCCCCCcEEEEeccCCCcchheecc
Confidence 333444444 33 367999999999987665543
No 146
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=82.14 E-value=2.2 Score=31.83 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=20.4
Q ss_pred CCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090 145 ERLNQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
...++|+++|+|.|..++.+++.++..
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~ 70 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAA 70 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-S
T ss_pred cCCceEEEECCccchhHHHHHhccCCc
Confidence 445799999999999999999985433
No 147
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=82.14 E-value=2 Score=36.47 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.9
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhcC
Q 037090 144 FERLNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
|.+.+.+||||.|.|+++.-+.-.|-
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y~ 176 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGYG 176 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhccC
Confidence 78899999999999999998876664
No 148
>PTZ00146 fibrillarin; Provisional
Probab=81.20 E-value=1.7 Score=35.51 Aligned_cols=33 Identities=6% Similarity=0.076 Sum_probs=25.5
Q ss_pred HHHHhcCC--CCCCCeEEEecCCccHHHHHHHHhc
Q 037090 136 EILETYKG--FERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 136 ~~~~~~~~--~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
.++...+. +....+|+|+|+|+|..+..+++..
T Consensus 120 ~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiV 154 (293)
T PTZ00146 120 AIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLV 154 (293)
T ss_pred HHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHh
Confidence 34444441 5666799999999999999999886
No 149
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=78.89 E-value=4 Score=33.15 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=30.3
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
+..+++.-+ .....+|+.||.|+|.+...++++-..+
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkV 83 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKV 83 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeE
Confidence 456677766 7778899999999999999999886543
No 150
>PLN02823 spermine synthase
Probab=78.64 E-value=3.3 Score=34.48 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=23.4
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 146 RLNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
+.++|+-||||.|..+.++++..|..+.++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~ 132 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVM 132 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEE
Confidence 346899999999999999998655545444
No 151
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=77.97 E-value=1.6 Score=36.72 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=33.3
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEec
Q 037090 135 KEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTIV 177 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~l 177 (178)
..+-...|+|+. ++|+|||-|.|.-+-+.-.-+|+++-.+||
T Consensus 103 ~~L~~~~~dfap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~il 144 (484)
T COG5459 103 DELQKRVPDFAP-QSILDVGAGPGTGLWALNDIWPDLKSAVIL 144 (484)
T ss_pred HHHHHhCCCcCc-chhhccCCCCchhhhhhcccCCCchhhhhh
Confidence 444445555653 459999999999999999999999988776
No 152
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=77.84 E-value=1.5 Score=33.77 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=23.8
Q ss_pred hcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeE
Q 037090 140 TYKGFERLNQFVDVADGLGENKNILLTKISIISL 173 (178)
Q Consensus 140 ~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~ 173 (178)
..| -..+..++|||||.|.+...|+.+.-.+.+
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd~Lla 70 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCDRLLA 70 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEEEEEE
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhCceEE
Confidence 455 555668999999999999999988754433
No 153
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=77.76 E-value=3.9 Score=33.18 Aligned_cols=31 Identities=10% Similarity=0.240 Sum_probs=25.9
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 146 RLNQFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
+.++|+=||||.|..+.++++..|.-+.+++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~V 106 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMV 106 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEE
Confidence 3469999999999999999998886666653
No 154
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=75.93 E-value=1.9 Score=31.80 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=25.5
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 136 EILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
.+-+.|.++++ +.+.|+|||.|.++ ++-.+|..+.+|
T Consensus 39 ~Ih~TygdiEg-kkl~DLgcgcGmLs--~a~sm~~~e~vl 75 (185)
T KOG3420|consen 39 TIHNTYGDIEG-KKLKDLGCGCGMLS--IAFSMPKNESVL 75 (185)
T ss_pred HHHhhhccccC-cchhhhcCchhhhH--HHhhcCCCceEE
Confidence 34455654554 67999999999998 555667665443
No 155
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=72.80 E-value=7 Score=30.62 Aligned_cols=27 Identities=4% Similarity=-0.102 Sum_probs=22.6
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090 144 FERLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
..+.++|+|||.|.|.-+..+++..|.
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~ 92 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPE 92 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCC
Confidence 345679999999999999999988763
No 156
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=72.63 E-value=7.6 Score=31.92 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=29.0
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCcc-----HHHHHHHHhcCCC
Q 037090 134 MKEILETYKGFERLNQFVDVADGLG-----ENKNILLTKISII 171 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G-----~~~~~i~~~~P~l 171 (178)
++..++..|.+.++-.+.++|||+| .++..+.+.||+.
T Consensus 79 ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~ 121 (328)
T cd00286 79 IRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKR 121 (328)
T ss_pred HHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCcc
Confidence 3556677886677889999999988 3556788889853
No 157
>PRK00536 speE spermidine synthase; Provisional
Probab=72.34 E-value=5.5 Score=31.98 Aligned_cols=28 Identities=14% Similarity=-0.002 Sum_probs=22.6
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 146 RLNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
+.++|+=||||.|..+.++++. |. +.++
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~~-~v~m 99 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-DT-HVDF 99 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-CC-eeEE
Confidence 4589999999999999999976 54 4443
No 158
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=72.26 E-value=11 Score=29.18 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=34.4
Q ss_pred HHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090 126 MHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 126 M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
..+.+..-..++.+.|.-+.+...|||+|...|.-+..++++-..
T Consensus 25 yRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~ 69 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGA 69 (205)
T ss_pred ccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCC
Confidence 344455555677777753788899999999999999988887654
No 159
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=71.54 E-value=13 Score=31.61 Aligned_cols=16 Identities=25% Similarity=0.138 Sum_probs=13.0
Q ss_pred CCCeEEEecCCccHHH
Q 037090 146 RLNQFVDVADGLGENK 161 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~ 161 (178)
+.-+|+|+|||+|..+
T Consensus 63 ~~~~iaDlGcs~G~nt 78 (386)
T PLN02668 63 VPFTAVDLGCSSGSNT 78 (386)
T ss_pred cceeEEEecCCCCccH
Confidence 3568999999999664
No 160
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=70.70 E-value=4.8 Score=34.55 Aligned_cols=30 Identities=7% Similarity=0.047 Sum_probs=24.0
Q ss_pred HhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090 139 ETYKGFERLNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 139 ~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
...+ .....+|+|+|+|.|..+..+++..+
T Consensus 246 ~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~ 275 (434)
T PRK14901 246 PLLD-PQPGEVILDACAAPGGKTTHIAELMG 275 (434)
T ss_pred HHhC-CCCcCEEEEeCCCCchhHHHHHHHhC
Confidence 3444 44557899999999999999999864
No 161
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=70.26 E-value=8.6 Score=32.52 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCcc-----HHHHHHHHhcCCC
Q 037090 134 MKEILETYKGFERLNQFVDVADGLG-----ENKNILLTKISII 171 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G-----~~~~~i~~~~P~l 171 (178)
++..++..|.+.++-.+-.+|||+| .++..+.+.||+.
T Consensus 89 ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~ 131 (379)
T cd02190 89 IRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEV 131 (379)
T ss_pred HHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCcc
Confidence 3556677776778889999999998 5566678889875
No 162
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=69.43 E-value=6.6 Score=31.28 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=22.5
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090 144 FERLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
.....+|+|+|+|.|..+..+++..+.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~ 95 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKN 95 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCC
Confidence 344578999999999999999988753
No 163
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=68.99 E-value=9.9 Score=28.73 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=30.4
Q ss_pred HHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090 131 TIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
...+..+....+ ++...-|+.+|-|+|.+..+|+++-
T Consensus 34 s~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~g 70 (194)
T COG3963 34 SILARKMASVID-PESGLPVLELGPGTGVITKAILSRG 70 (194)
T ss_pred HHHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcC
Confidence 344566777888 8888889999999999999988764
No 164
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=68.51 E-value=20 Score=30.25 Aligned_cols=50 Identities=12% Similarity=0.253 Sum_probs=31.9
Q ss_pred cChHHHHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090 114 KDEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 114 ~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
.-|+....|....+.+ ..+.| +... -...-.||.||.|+|+++..+++..
T Consensus 50 TApels~lFGella~~---~~~~w-q~~g-~p~~~~lvEiGaG~G~l~~DiL~~l 99 (370)
T COG1565 50 TAPELSQLFGELLAEQ---FLQLW-QELG-RPAPLKLVEIGAGRGTLASDILRTL 99 (370)
T ss_pred echhHHHHHHHHHHHH---HHHHH-HHhc-CCCCceEEEeCCCcChHHHHHHHHH
Confidence 3677777787765432 22222 2222 2233579999999999999888765
No 165
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=68.40 E-value=11 Score=31.86 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccH-----HHHHHHHhcCCC
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGE-----NKNILLTKISII 171 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~-----~~~~i~~~~P~l 171 (178)
++..++.+|.+.++-.+.++|||+|. ++..+.+.||+.
T Consensus 79 ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~ 121 (382)
T cd06059 79 IRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKI 121 (382)
T ss_pred HHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCcc
Confidence 45677888867788899999999872 233466778865
No 166
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=68.19 E-value=6.4 Score=33.89 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=21.4
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhcC
Q 037090 144 FERLNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
.....+|+|+|+|.|..+..+++..+
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~ 273 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQ 273 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhC
Confidence 34457899999999999998888764
No 167
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=67.12 E-value=9.9 Score=30.33 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=24.3
Q ss_pred eEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 149 QFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 149 ~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
+|+.||||.|....-|++-+|+-+..|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~ 101 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVY 101 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEE
Confidence 7999999999999999999999554443
No 168
>PRK09273 hypothetical protein; Provisional
Probab=66.52 E-value=5.6 Score=30.87 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=24.3
Q ss_pred eEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 149 QFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 149 ~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
-.+=++||+|.-....+.++|++++.+.
T Consensus 65 d~GIliCGTGiG~siAANK~pGIraalc 92 (211)
T PRK09273 65 DFVVTGCGTGQGAMLALNSFPGVVCGYC 92 (211)
T ss_pred CEEEEEcCcHHHHHHHHhcCCCeEEEEe
Confidence 3556789999999999999999999875
No 169
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=65.87 E-value=13 Score=32.04 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=21.6
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhc
Q 037090 144 FERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
..+..+|+|+|+|.|..+..+++..
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~ 259 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELM 259 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc
Confidence 4555789999999999999999876
No 170
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=65.19 E-value=9.1 Score=29.49 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=22.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCC
Q 037090 146 RLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
+.++|++||.+.|.-++.+++..|.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~ 69 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPE 69 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTT
T ss_pred CCceEEEeccccccHHHHHHHhhcc
Confidence 4679999999999999999999985
No 171
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=63.15 E-value=16 Score=29.03 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=27.2
Q ss_pred hHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090 133 VMKEILETYKGFERLNQFVDVADGLGENKNILLTK 167 (178)
Q Consensus 133 ~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~ 167 (178)
-....++.|+-..+.+.++|||.++|.|..-++++
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~ 100 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQR 100 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHc
Confidence 34566777772235689999999999999998887
No 172
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=62.85 E-value=18 Score=30.44 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=21.2
Q ss_pred CCCCeEEEecCCccHHHHHHHHhc
Q 037090 145 ERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
....++||||.++|..+..++++-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG 233 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG 233 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC
Confidence 356799999999999999999884
No 173
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=62.73 E-value=11 Score=31.36 Aligned_cols=48 Identities=13% Similarity=0.060 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcC
Q 037090 119 NNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 119 ~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
.+.|++++.+. .+...+.....-.+..+|+|+|||.|..+....+..+
T Consensus 38 lR~fNNwvKs~---LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i 85 (331)
T PF03291_consen 38 LRNFNNWVKSV---LIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKI 85 (331)
T ss_dssp HHHHHHHHHHH---HHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-
T ss_pred HHHHhHHHHHH---HHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCC
Confidence 56777776442 1111222111011567999999999999888777643
No 174
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=62.50 E-value=8.8 Score=30.35 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=22.3
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 146 RLNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
+.++|+=||||.|..+.++++..|..+.++
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~ 105 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITV 105 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEE
Confidence 467999999999999999986554555554
No 175
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=60.10 E-value=6.9 Score=34.39 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=22.2
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCC
Q 037090 146 RLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
+..+|+|.+||+|.++.+++++.+.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~ 55 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEE 55 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHh
Confidence 4568999999999999999998874
No 176
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=58.84 E-value=18 Score=31.22 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=28.2
Q ss_pred HHHHHhcCCCCCCCeEEEecCCcc-----HHHHHHHHhcCCC
Q 037090 135 KEILETYKGFERLNQFVDVADGLG-----ENKNILLTKISII 171 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G-----~~~~~i~~~~P~l 171 (178)
+..++..|.+.++-.+-.+|||+| .++..|...||+.
T Consensus 121 r~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~~ 162 (431)
T cd02188 121 DREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKK 162 (431)
T ss_pred HHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHcCcc
Confidence 445566766778889999999998 4556688889964
No 177
>COG4883 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.54 E-value=67 Score=26.73 Aligned_cols=87 Identities=17% Similarity=0.220 Sum_probs=56.0
Q ss_pred hhhhhhHHHHHhcCCcchhhhccCCchhhhhc-cChHHHHHHHHHHHhh---hHHhHHHHHHhcCCCCCCCeEEEec---
Q 037090 82 MDSWSCVKDALLEGLVPFMKAHNGMDGFAVAA-KDEKINNLFNQSMHNH---TTIVMKEILETYKGFERLNQFVDVA--- 154 (178)
Q Consensus 82 ~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~-~~p~~~~~F~~~M~~~---~~~~~~~~~~~~~~~~~~~~vVDVG--- 154 (178)
+.....|.+.+|-...||-.-++.....|.+. ++|++.+...+..... ......+.++.|-+|-+...|||..
T Consensus 69 yeil~sltdtvrpeddpfvehyqtp~ileilyeed~~f~ksv~kfie~ieksealigke~irryggfygptcvvdfal~p 148 (500)
T COG4883 69 YEILTSLTDTVRPEDDPFVEHYQTPPILEILYEEDPAFHKSVMKFIEEIEKSEALIGKESIRRYGGFYGPTCVVDFALVP 148 (500)
T ss_pred HHHHHhhhcccCCCCCchhhhccCchHHHHHHhcCHHHHHHHHHHHHHHhHHHhhhhHHHHHHhcCccCCceEEEEEecC
Confidence 34445677777766778876663345566654 5776665544444443 3445577788887888889999954
Q ss_pred CCccHHHHHHHHhc
Q 037090 155 DGLGENKNILLTKI 168 (178)
Q Consensus 155 Gg~G~~~~~i~~~~ 168 (178)
|++-.....|+++-
T Consensus 149 gstsnvvnrilk~~ 162 (500)
T COG4883 149 GSTSNVVNRILKKM 162 (500)
T ss_pred CchHHHHHHHHHhc
Confidence 66666666666653
No 178
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=57.53 E-value=25 Score=32.19 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=34.3
Q ss_pred hhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 129 HTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
.+....+.++..+. .. ..-.+=+|-|+|.++..+++.||..+++
T Consensus 307 GAHYKlRsIL~~~~-i~-~~d~l~~GDGSGGita~lLR~~p~sr~i 350 (675)
T PF14314_consen 307 GAHYKLRSILKNLN-IK-YRDALCGGDGSGGITACLLRMNPTSRGI 350 (675)
T ss_pred cchhhHHHHHHhcC-CC-cceeEEEecCchHHHHHHHHhCccccee
Confidence 34455678888877 33 2446888999999999999999999875
No 179
>PHA01634 hypothetical protein
Probab=56.83 E-value=10 Score=27.33 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=19.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhc
Q 037090 146 RLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
..++|+|||++.|.-++-++-+-
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G 50 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG 50 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC
Confidence 34799999999999988877654
No 180
>PLN02476 O-methyltransferase
Probab=56.31 E-value=17 Score=29.49 Aligned_cols=27 Identities=7% Similarity=-0.018 Sum_probs=23.6
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090 144 FERLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
..+.++|++||.+.|..++.+++.-|.
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~ 142 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPE 142 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998764
No 181
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=55.76 E-value=11 Score=33.06 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=17.5
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCc
Q 037090 134 MKEILETYKGFERLNQFVDVADGL 157 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~ 157 (178)
.-.+...++ +.+...++|||||+
T Consensus 118 ~lGv~~~~~-~~~~~lv~DIGGGS 140 (492)
T COG0248 118 YLGVASTLP-RKGDGLVIDIGGGS 140 (492)
T ss_pred HHHHHhcCC-CCCCEEEEEecCCe
Confidence 345667777 66678999999996
No 182
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=55.67 E-value=22 Score=28.25 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=28.3
Q ss_pred HHHHHHHhhhHHh----HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090 121 LFNQSMHNHTTIV----MKEILETYKGFERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 121 ~F~~~M~~~~~~~----~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
.|...|.-.++.. +..++-..+ .....+||+.|-|+|.++..|++.-
T Consensus 12 ~~~~~l~rrtQIiYpkD~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v 62 (247)
T PF08704_consen 12 LWTLSLPRRTQIIYPKDISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAV 62 (247)
T ss_dssp HHHHTS-SSS----HHHHHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHH
T ss_pred HHHHhccCCcceeeCchHHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHh
Confidence 3555555555533 345566666 7778999999999999999999764
No 183
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=55.34 E-value=41 Score=26.95 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=32.0
Q ss_pred HHhhhHHh----HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh-cCC
Q 037090 126 MHNHTTIV----MKEILETYKGFERLNQFVDVADGLGENKNILLTK-ISI 170 (178)
Q Consensus 126 M~~~~~~~----~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~-~P~ 170 (178)
|.-.++.. +..++.... .+...+|+|.|-|+|.++..|++. .|.
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~ 119 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPE 119 (256)
T ss_pred CcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCC
Confidence 55444432 345566665 788899999999999999999974 343
No 184
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=54.96 E-value=20 Score=30.39 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=20.4
Q ss_pred CeEEEecCCccHHHHHHHHhcC
Q 037090 148 NQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 148 ~~vVDVGGg~G~~~~~i~~~~P 169 (178)
.+|+|+++|+|.+++.++.+.+
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~ 80 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG 80 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC
Confidence 5799999999999999998877
No 185
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=52.93 E-value=50 Score=25.33 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccH-----HHHHHHHhcCCCeEE
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGE-----NKNILLTKISIISLN 174 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~-----~~~~i~~~~P~l~~~ 174 (178)
++..++.++.+..+-.+.=+|||+|. ++..+.+.||+....
T Consensus 114 ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~ 159 (216)
T PF00091_consen 114 IRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPII 159 (216)
T ss_dssp HHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEE
T ss_pred cchhhccccccccceecccccceeccccccccchhhhcccccccee
Confidence 34455555645666788999999875 445677888887543
No 186
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=52.88 E-value=15 Score=26.67 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=21.1
Q ss_pred ecCCccHHHHHHHHhcCCCeEEEe
Q 037090 153 VADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 153 VGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
+.||+|.-....+.|+|.+++.+.
T Consensus 62 liCGtGiG~siaANK~~GIraa~~ 85 (143)
T TIGR01120 62 LICGTGIGMSIAANKFAGIRAALC 85 (143)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEE
Confidence 458999999999999999999875
No 187
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=52.67 E-value=14 Score=28.29 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.4
Q ss_pred CCeEEEecCCccHHHHHHHHhc
Q 037090 147 LNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
.+.+++||+|+|..+..+++..
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i 65 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVI 65 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhc
Confidence 4789999999999999888765
No 188
>PTZ00387 epsilon tubulin; Provisional
Probab=52.37 E-value=26 Score=30.57 Aligned_cols=38 Identities=11% Similarity=0.238 Sum_probs=28.7
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCcc-----HHHHHHHHhcCCC
Q 037090 134 MKEILETYKGFERLNQFVDVADGLG-----ENKNILLTKISII 171 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G-----~~~~~i~~~~P~l 171 (178)
++..++..|.+.++-.+-.+|||+| .++..+.+.||+.
T Consensus 121 Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~~~ 163 (465)
T PTZ00387 121 VRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHV 163 (465)
T ss_pred HHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhcccC
Confidence 3556778876778889999999998 3444577888875
No 189
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=52.05 E-value=10 Score=30.18 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=19.8
Q ss_pred CCCeEEEecCCccHHHHHHHHhc
Q 037090 146 RLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
.++++.|||||.|+....++.+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~ 94 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG 94 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc
Confidence 35689999999999999988765
No 190
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=51.75 E-value=16 Score=26.58 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=21.1
Q ss_pred ecCCccHHHHHHHHhcCCCeEEEe
Q 037090 153 VADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 153 VGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
+.||+|.-....+.|+|.+++.+.
T Consensus 61 liCGtGiG~siaANK~~GIraa~~ 84 (144)
T TIGR00689 61 LICGTGIGMSIAANKFKGIRAALC 84 (144)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEE
Confidence 458999999999999999998875
No 191
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=51.71 E-value=12 Score=29.29 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=17.6
Q ss_pred CCCCeEEEecCCccHHHHHHHH
Q 037090 145 ERLNQFVDVADGLGENKNILLT 166 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~~~i~~ 166 (178)
-....++|||+|+|.+...++.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~ 102 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFAR 102 (237)
T ss_pred ccCcceeecCCCccHHHHHHHH
Confidence 3445699999999999887764
No 192
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=51.66 E-value=25 Score=30.36 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=23.8
Q ss_pred CCCCCeEEEecCCccHHHHH-HHHhcCCC
Q 037090 144 FERLNQFVDVADGLGENKNI-LLTKISII 171 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~-i~~~~P~l 171 (178)
..+..-||-+||+-|.++.+ ++-||||+
T Consensus 163 ~a~~~pvIafGGSYGGMLaAWfRlKYPHi 191 (492)
T KOG2183|consen 163 SAEASPVIAFGGSYGGMLAAWFRLKYPHI 191 (492)
T ss_pred ccccCcEEEecCchhhHHHHHHHhcChhh
Confidence 44566799999999999888 88899997
No 193
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=51.65 E-value=13 Score=26.85 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=19.1
Q ss_pred EecCCccHHHHHHHHhcCCCeEEEe
Q 037090 152 DVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 152 DVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
=+.||+|.-....+.++|++++.+.
T Consensus 61 IliCgtGiG~~iaANK~~GIrAa~~ 85 (140)
T PF02502_consen 61 ILICGTGIGMSIAANKVPGIRAALC 85 (140)
T ss_dssp EEEESSSHHHHHHHHTSTT--EEE-
T ss_pred EEEcCCChhhhhHhhcCCCEEEEee
Confidence 3457999999999999999998764
No 194
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=51.19 E-value=14 Score=31.45 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=17.7
Q ss_pred CCCeEEEecCCccHHHHHHHH
Q 037090 146 RLNQFVDVADGLGENKNILLT 166 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~ 166 (178)
+.++|+|+|+|+|.++.+.+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~ 240 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALM 240 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHh
Confidence 457899999999999887664
No 195
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.02 E-value=19 Score=26.69 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=23.1
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc
Q 037090 135 KEILETYKGFERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
.+++.-.+ -....++||+|.|.|..-.+.++.-
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g 94 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG 94 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC
Confidence 44555555 3445789999999998877766543
No 196
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=50.60 E-value=18 Score=30.30 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090 119 NNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTK 167 (178)
Q Consensus 119 ~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~ 167 (178)
.+.||++|.+ .+++.|- .....+.|+|||.|..++..-++
T Consensus 99 lRnfNNwIKs-------~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA 138 (389)
T KOG1975|consen 99 LRNFNNWIKS-------VLINLYT--KRGDDVLDLGCGKGGDLLKWDKA 138 (389)
T ss_pred hhhhhHHHHH-------HHHHHHh--ccccccceeccCCcccHhHhhhh
Confidence 3456666533 2555553 45567889999999998876543
No 197
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=49.60 E-value=15 Score=33.68 Aligned_cols=21 Identities=10% Similarity=-0.009 Sum_probs=19.3
Q ss_pred CCeEEEecCCccHHHHHHHHh
Q 037090 147 LNQFVDVADGLGENKNILLTK 167 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~ 167 (178)
.++|+|+|+|+|.++..+++.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~ 559 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG 559 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC
Confidence 478999999999999999986
No 198
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=49.50 E-value=44 Score=25.86 Aligned_cols=32 Identities=9% Similarity=0.263 Sum_probs=24.8
Q ss_pred HhcCCCCCCCeEEEecCCccHHHHHHHHhc-CC
Q 037090 139 ETYKGFERLNQFVDVADGLGENKNILLTKI-SI 170 (178)
Q Consensus 139 ~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~ 170 (178)
+.|.-+.+..+|+|+|...|.-+....++- |.
T Consensus 62 dKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~ 94 (232)
T KOG4589|consen 62 DKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPN 94 (232)
T ss_pred hhccccCCCCEEEEccCCCChHHHHHHHhhCCC
Confidence 344424667899999999999999888776 64
No 199
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=49.34 E-value=67 Score=26.60 Aligned_cols=70 Identities=11% Similarity=0.032 Sum_probs=39.0
Q ss_pred chhhhccC-Cchhhhhcc-ChHHHHHHHHHHHhhhHHhHHHHHHhcCC-----CCCCCeEEEecCCccHHHHHHHHhc
Q 037090 98 PFMKAHNG-MDGFAVAAK-DEKINNLFNQSMHNHTTIVMKEILETYKG-----FERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 98 ~f~~a~~g-~~~~e~~~~-~p~~~~~F~~~M~~~~~~~~~~~~~~~~~-----~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
-|..||+. ....-|..+ -|.++-.|...+.+..... ..+...-++ -....+||-||||-|.=+.+++..+
T Consensus 32 Df~~AF~~~~~L~AYA~RWSPsRAL~Yaslf~~l~~~l-~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~~ 108 (315)
T PF11312_consen 32 DFAAAFGDEEKLEAYAARWSPSRALAYASLFASLKEHL-ELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAAF 108 (315)
T ss_pred hHHHHhCChhhhhhheeccCHHHHHHHHHHHHHHHHHH-HhhccccccccccccccCceEEEECCChHHHHHHHHHHH
Confidence 35555521 223344444 6777766777666543322 111100000 1123689999999999999988877
No 200
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=49.19 E-value=15 Score=30.63 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=29.0
Q ss_pred HHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 131 TIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
......+++..+ ..+. .|+|+=||.|.++..++++.-.+-|+
T Consensus 183 ~~l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~~V~gv 224 (352)
T PF05958_consen 183 EKLYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAKKVIGV 224 (352)
T ss_dssp HHHHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSSEEEEE
T ss_pred HHHHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCCeEEEe
Confidence 333455566665 4433 79999999999999999988766553
No 201
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=49.09 E-value=33 Score=29.67 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=28.2
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccH-----HHHHHHHhcCCC
Q 037090 135 KEILETYKGFERLNQFVDVADGLGE-----NKNILLTKISII 171 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~-----~~~~i~~~~P~l 171 (178)
+..++.+|.+.++-.+-.+|||+|. ++..|...||..
T Consensus 117 r~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~ 158 (446)
T cd02189 117 RKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPES 158 (446)
T ss_pred HHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCcc
Confidence 4556778767888899999999983 444577888875
No 202
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=47.99 E-value=33 Score=30.20 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=30.5
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHh----cCCC
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTK----ISII 171 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~----~P~l 171 (178)
++..++.+|.+.++..+.|++||.|.++..++++ ||+-
T Consensus 141 IR~~vEeCD~LQGFqi~~sl~gG~sG~gs~lLE~L~DEy~k~ 182 (493)
T cd06060 141 LRFYVEECDYLQGFQVLCDLHDGFSGVGAKCLEHLQDEYGKA 182 (493)
T ss_pred HHHHHHhCcccccEEEEEecCCcccchHHHHHHHHHHhcCcc
Confidence 4567788886788889999999999998876665 7763
No 203
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=47.42 E-value=14 Score=21.86 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=18.3
Q ss_pred HHHHHHHHhC------CCCCCceecchhccccC
Q 037090 35 MTIKSAIELD------RSVQRLYGLAPVSKYFV 61 (178)
Q Consensus 35 ~~L~~a~elg------R~~~~~y~~t~~s~~L~ 61 (178)
++|++|+||| +.+++..+.+++...+-
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTST
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcC
Confidence 5799999999 23346677777766665
No 204
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=46.96 E-value=41 Score=25.09 Aligned_cols=38 Identities=13% Similarity=-0.046 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIIS 172 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~ 172 (178)
+..++.... +.+...|+|-=||+|.++++.+...+++.
T Consensus 17 A~~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~ 54 (179)
T PF01170_consen 17 AAALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIP 54 (179)
T ss_dssp HHHHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTS
T ss_pred HHHHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcc
Confidence 344555555 77778999999999999999888777654
No 205
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=46.53 E-value=30 Score=27.06 Aligned_cols=31 Identities=3% Similarity=0.084 Sum_probs=26.2
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 144 FERLNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
.++.++++.||.+.|.-++.++..-|+ .+++
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~-~g~l 87 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPD-DGRL 87 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCC-CCeE
Confidence 456789999999999999999999995 4433
No 206
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=45.88 E-value=21 Score=26.89 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=18.4
Q ss_pred CCeEEEecCCccHHHHHHHHhcC
Q 037090 147 LNQFVDVADGLGENKNILLTKIS 169 (178)
Q Consensus 147 ~~~vVDVGGg~G~~~~~i~~~~P 169 (178)
..+++|+=+|+|.++.+.+.|.-
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA 65 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGA 65 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-
T ss_pred CCeEEEcCCccCccHHHHHhcCC
Confidence 46899999999999999998863
No 207
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=45.79 E-value=22 Score=31.41 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=26.1
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 144 FERLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
.+..+.++||-||+|.++.+++++.-.+-|+
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~~ViGv 411 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVKRVIGV 411 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccccceeee
Confidence 5556899999999999999999988766554
No 208
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=45.45 E-value=19 Score=31.53 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=13.2
Q ss_pred HHHhcCCCCCCCeEEEecCCc
Q 037090 137 ILETYKGFERLNQFVDVADGL 157 (178)
Q Consensus 137 ~~~~~~~~~~~~~vVDVGGg~ 157 (178)
+...++ ..+...|+|||||+
T Consensus 124 v~~~l~-~~~~~lviDIGGGS 143 (496)
T PRK11031 124 VAHTTG-GADQRLVVDIGGAS 143 (496)
T ss_pred hhhccC-CCCCEEEEEecCCe
Confidence 334444 43445899999987
No 209
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=45.07 E-value=22 Score=28.39 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=10.3
Q ss_pred CCCCeEEEecCCc
Q 037090 145 ERLNQFVDVADGL 157 (178)
Q Consensus 145 ~~~~~vVDVGGg~ 157 (178)
.+...++|||||+
T Consensus 111 ~~~~lviDIGGGS 123 (285)
T PF02541_consen 111 DKNGLVIDIGGGS 123 (285)
T ss_dssp TSSEEEEEEESSE
T ss_pred cCCEEEEEECCCc
Confidence 3456899999986
No 210
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=44.97 E-value=11 Score=29.30 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=9.2
Q ss_pred CeEEEecCCcc
Q 037090 148 NQFVDVADGLG 158 (178)
Q Consensus 148 ~~vVDVGGg~G 158 (178)
..|||||||+=
T Consensus 142 g~VVDiGGGTT 152 (277)
T COG4820 142 GGVVDIGGGTT 152 (277)
T ss_pred CcEEEeCCCcc
Confidence 57999999974
No 211
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=44.73 E-value=25 Score=25.76 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.4
Q ss_pred cCCccHHHHHHHHhcCCCeEEEe
Q 037090 154 ADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 154 GGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
-||+|.-....+.|+|.+++.+.
T Consensus 65 iCGtGiG~siaANK~~GIRAA~~ 87 (148)
T PRK05571 65 ICGTGIGMSIAANKVKGIRAALC 87 (148)
T ss_pred EcCCcHHHHHHHhcCCCeEEEEE
Confidence 37899999999999999999875
No 212
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=44.68 E-value=36 Score=29.21 Aligned_cols=37 Identities=8% Similarity=0.062 Sum_probs=27.0
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccH-----HHHHHHHhcCCC
Q 037090 135 KEILETYKGFERLNQFVDVADGLGE-----NKNILLTKISII 171 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~-----~~~~i~~~~P~l 171 (178)
+..++.+|.+.++-.+-.+|||+|. ++..|...||+.
T Consensus 120 r~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~~ 161 (425)
T cd02187 120 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDR 161 (425)
T ss_pred HHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCCc
Confidence 4455667657788899999999972 234578889875
No 213
>PLN00221 tubulin alpha chain; Provisional
Probab=43.14 E-value=35 Score=29.58 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccH-----HHHHHHHhcCCC
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGE-----NKNILLTKISII 171 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~-----~~~~i~~~~P~l 171 (178)
++..++.+|.+.++-.+-.+|||+|. ++..|...||..
T Consensus 122 ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~y~~~ 164 (450)
T PLN00221 122 IRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKK 164 (450)
T ss_pred HHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHhcccc
Confidence 35566788867888899999999975 344578888864
No 214
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=42.37 E-value=26 Score=26.29 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.1
Q ss_pred ecCCccHHHHHHHHhcCCCeEEEe
Q 037090 153 VADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 153 VGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
+-||+|.-....+.|+|.+++.+.
T Consensus 63 liCGTGiG~siaANK~~GIRAA~~ 86 (171)
T PRK12615 63 CICGTGVGINNAVNKVPGIRSALV 86 (171)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEe
Confidence 447999999999999999999875
No 215
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=42.31 E-value=64 Score=25.29 Aligned_cols=29 Identities=10% Similarity=-0.039 Sum_probs=22.8
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090 144 FERLNQFVDVADGLGENKNILLTKISIIS 172 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~l~ 172 (178)
.....+|++.|||.|..+.-++++-=++-
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~~V~ 69 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGVKVI 69 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCCcEE
Confidence 34457999999999999999988754443
No 216
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=42.27 E-value=23 Score=26.01 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=22.7
Q ss_pred EEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 150 FVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 150 vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
+.=+.||+|.-....+.++|.+++.+.
T Consensus 61 ~GIliCGTGiG~~iaANKv~GiraAl~ 87 (151)
T COG0698 61 LGILICGTGIGMSIAANKVPGIRAALV 87 (151)
T ss_pred eeEEEecCChhHHHHhhccCCeEEEEe
Confidence 344568999999999999999999875
No 217
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=42.19 E-value=33 Score=26.64 Aligned_cols=25 Identities=12% Similarity=-0.019 Sum_probs=21.1
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhc
Q 037090 144 FERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
.....+|++.|||.|+.+..++++-
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G 59 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQG 59 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTT
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCC
Confidence 4445689999999999999999874
No 218
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=41.69 E-value=68 Score=28.74 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=38.7
Q ss_pred chhhhhccChHHHHHHHHHHHhhhHHhHHHHHHhcCC--CCCCCeEEEecCCccHHHHHHHHhc
Q 037090 107 DGFAVAAKDEKINNLFNQSMHNHTTIVMKEILETYKG--FERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 107 ~~~e~~~~~p~~~~~F~~~M~~~~~~~~~~~~~~~~~--~~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
..||.++++|..-..|.+|. ...+.+..|+ -+...+|.=+|||.|-+..+.+++-
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa 389 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAA 389 (649)
T ss_pred hhhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHH
Confidence 45888999997766666653 3456666662 2335678889999999988876653
No 219
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=41.68 E-value=33 Score=27.56 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=9.7
Q ss_pred CCCCCeEEEecC
Q 037090 144 FERLNQFVDVAD 155 (178)
Q Consensus 144 ~~~~~~vVDVGG 155 (178)
+.+..+|+||||
T Consensus 95 ~p~~~tIiDIGG 106 (262)
T TIGR02261 95 NPEARAVLDIGA 106 (262)
T ss_pred CCCCCEEEEeCC
Confidence 456779999999
No 220
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=41.34 E-value=43 Score=30.79 Aligned_cols=36 Identities=14% Similarity=-0.002 Sum_probs=27.0
Q ss_pred HhHHHHHHhcCCC-CCCCeEEEecCCccHHHHHHHHhc
Q 037090 132 IVMKEILETYKGF-ERLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 132 ~~~~~~~~~~~~~-~~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
..+..++.... | .+...++|-.||+|.++++.+...
T Consensus 176 tlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~ 212 (702)
T PRK11783 176 NLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMA 212 (702)
T ss_pred HHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHH
Confidence 34555665555 7 456799999999999999987753
No 221
>COG5023 Tubulin [Cytoskeleton]
Probab=41.12 E-value=55 Score=27.88 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=28.2
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccH-----HHHHHHHhcCC
Q 037090 135 KEILETYKGFERLNQFVDVADGLGE-----NKNILLTKISI 170 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~-----~~~~i~~~~P~ 170 (178)
+..++..|++.++-..=-+|||+|. ++..|+.+||+
T Consensus 121 rreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypk 161 (443)
T COG5023 121 RREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPK 161 (443)
T ss_pred HHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcch
Confidence 4456777778888888899999985 55668899997
No 222
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=40.57 E-value=1.5e+02 Score=21.95 Aligned_cols=55 Identities=11% Similarity=0.113 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 119 NNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 119 ~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
...|.+-|.+..... ....+...+.+ .-|+++|=|.|.-=-.+.+.+|+=+..||
T Consensus 4 LDsfi~RmtaQR~~L-~~a~~~v~~~~--G~VlElGLGNGRTydHLRe~~p~R~I~vf 58 (160)
T PF12692_consen 4 LDSFIRRMTAQRDCL-NWAAAQVAGLP--GPVLELGLGNGRTYDHLREIFPDRRIYVF 58 (160)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHTTT----S-EEEE--TTSHHHHHHHHH--SS-EEEE
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhcCCC--CceEEeccCCCccHHHHHHhCCCCeEEEE
Confidence 456777776655443 44555554333 57999999999999999999999988887
No 223
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=40.48 E-value=44 Score=26.92 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=18.7
Q ss_pred CCCCCeEEEecCCccHHHHHHHHh
Q 037090 144 FERLNQFVDVADGLGENKNILLTK 167 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~ 167 (178)
-....+|+|-.||+|.++.++.+.
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~ 67 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEY 67 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHH
T ss_pred ccccceeechhhhHHHHHHHHHHh
Confidence 445568999999999999998874
No 224
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=40.47 E-value=55 Score=27.86 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=21.2
Q ss_pred HhcCCCCCCCeEEEecCCccHHHHH-HHHhcCCC
Q 037090 139 ETYKGFERLNQFVDVADGLGENKNI-LLTKISII 171 (178)
Q Consensus 139 ~~~~~~~~~~~vVDVGGg~G~~~~~-i~~~~P~l 171 (178)
..++ -.....+|=+||+-|..+.+ ++.+||++
T Consensus 105 ~~~~-~~~~~pwI~~GgSY~G~Laaw~r~kyP~~ 137 (434)
T PF05577_consen 105 KKYN-TAPNSPWIVFGGSYGGALAAWFRLKYPHL 137 (434)
T ss_dssp HHTT-TGCC--EEEEEETHHHHHHHHHHHH-TTT
T ss_pred Hhhc-CCCCCCEEEECCcchhHHHHHHHhhCCCe
Confidence 3444 33445799999998776666 88899997
No 225
>PRK10854 exopolyphosphatase; Provisional
Probab=40.08 E-value=23 Score=31.18 Aligned_cols=13 Identities=15% Similarity=0.343 Sum_probs=10.2
Q ss_pred CCCCeEEEecCCc
Q 037090 145 ERLNQFVDVADGL 157 (178)
Q Consensus 145 ~~~~~vVDVGGg~ 157 (178)
.+...|+|||||+
T Consensus 136 ~~~~lvvDIGGGS 148 (513)
T PRK10854 136 KGRKLVIDIGGGS 148 (513)
T ss_pred CCCeEEEEeCCCe
Confidence 3446899999986
No 226
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=39.24 E-value=70 Score=24.87 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=22.7
Q ss_pred HHhcCCCCCCCeEEEecCCccHHHHHHHHh
Q 037090 138 LETYKGFERLNQFVDVADGLGENKNILLTK 167 (178)
Q Consensus 138 ~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~ 167 (178)
+..-|++-..++|+|.|-|+|..+++-++.
T Consensus 71 i~~~PetVrgkrVLd~gagsgLvaIAaa~a 100 (218)
T COG3897 71 IDDHPETVRGKRVLDLGAGSGLVAIAAARA 100 (218)
T ss_pred HhcCccccccceeeecccccChHHHHHHHh
Confidence 333344667789999999999998887654
No 227
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=38.83 E-value=34 Score=25.14 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=20.7
Q ss_pred ecCCccHHHHHHHHhcCCCeEEEe
Q 037090 153 VADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 153 VGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
+-||+|.-....+.|+|.+++.+.
T Consensus 67 liCGtGiG~siaANK~~GIRAa~~ 90 (151)
T PTZ00215 67 LVCGSGIGISIAANKVKGIRCALC 90 (151)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEE
Confidence 347899999999999999998874
No 228
>PLN00222 tubulin gamma chain; Provisional
Probab=38.60 E-value=60 Score=28.24 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=27.3
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccH-----HHHHHHHhcCCC
Q 037090 135 KEILETYKGFERLNQFVDVADGLGE-----NKNILLTKISII 171 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~-----~~~~i~~~~P~l 171 (178)
+..++.+|.+.++-.+-.+|||+|. ++..|.+.||..
T Consensus 123 r~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~y~~~ 164 (454)
T PLN00222 123 DREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKK 164 (454)
T ss_pred HHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhhcCCc
Confidence 4445667767788889999999873 455688889864
No 229
>PF09959 DUF2193: Uncharacterized protein conserved in archaea (DUF2193); InterPro: IPR018694 This family of various hypothetical archaeal proteins has no known function
Probab=38.24 E-value=1.4e+02 Score=25.71 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=52.5
Q ss_pred hhhhhhHHHHHhcCCcchhhhccCCchhhhhc-cChHHHHH---HHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCc
Q 037090 82 MDSWSCVKDALLEGLVPFMKAHNGMDGFAVAA-KDEKINNL---FNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGL 157 (178)
Q Consensus 82 ~~~~~~L~~~l~~g~~~f~~a~~g~~~~e~~~-~~p~~~~~---F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~ 157 (178)
+.....|.+.+|-...||-.-++.-..-|.|. ++|.+.+. |.++..........+..+.|-+|-+...|||-.=-.
T Consensus 68 yeiL~~LT~tvrPeDDPFVEhyQTP~ilEILy~eD~~F~ks~~kfi~~I~~sealIg~E~~RrygGFYGpTcVvDFAliP 147 (499)
T PF09959_consen 68 YEILKSLTDTVRPEDDPFVEHYQTPAILEILYEEDPAFRKSVEKFIEAIGKSEALIGKESARRYGGFYGPTCVVDFALIP 147 (499)
T ss_pred HHHHHHHhcccCCCCCchHhhccccHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHhhHHHHHHhcCccCCceeeeeeecC
Confidence 44556677777767778876662234456654 56766554 444444444556677888998899999999976555
Q ss_pred cHHHH
Q 037090 158 GENKN 162 (178)
Q Consensus 158 G~~~~ 162 (178)
|..+.
T Consensus 148 GSTsN 152 (499)
T PF09959_consen 148 GSTSN 152 (499)
T ss_pred CchHH
Confidence 54443
No 230
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=37.92 E-value=34 Score=25.67 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.4
Q ss_pred cCCccHHHHHHHHhcCCCeEEEe
Q 037090 154 ADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 154 GGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
-||+|.-....+.|+|.+++.+.
T Consensus 64 iCGTGiG~siaANKv~GIRAAl~ 86 (171)
T TIGR01119 64 ICGTGVGINNAVNKVPGVRSALV 86 (171)
T ss_pred EcCCcHHHHHHHhcCCCeEEEEe
Confidence 47899999999999999999875
No 231
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=37.74 E-value=41 Score=26.34 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=9.4
Q ss_pred CccHHHHHHHHhc
Q 037090 156 GLGENKNILLTKI 168 (178)
Q Consensus 156 g~G~~~~~i~~~~ 168 (178)
|+|.+...+++++
T Consensus 125 Gtg~f~e~~a~~l 137 (248)
T TIGR00241 125 GTGRFLEVTARRL 137 (248)
T ss_pred cccHHHHHHHHHc
Confidence 7888877777553
No 232
>PF14881 Tubulin_3: Tubulin domain
Probab=37.56 E-value=95 Score=23.35 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=31.1
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHH----HHhcCCCeE
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNIL----LTKISIISL 173 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i----~~~~P~l~~ 173 (178)
++.+++.+|.+.++..++|+-+|=|.++..+ ...||+...
T Consensus 64 lR~f~EECD~lQGfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i 107 (180)
T PF14881_consen 64 LRFFLEECDSLQGFQVLTDVDDGWGGFASSLLEHLRDEYPKKPI 107 (180)
T ss_pred HHHHHHHcccccceEEEecCCCchHhHHHHHHHHHHHHcCCCce
Confidence 4678899996778899999988888877664 556777664
No 233
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=37.35 E-value=71 Score=24.94 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=9.3
Q ss_pred CeEEEecCCccHH
Q 037090 148 NQFVDVADGLGEN 160 (178)
Q Consensus 148 ~~vVDVGGg~G~~ 160 (178)
-.++|||||-|.-
T Consensus 197 l~~idiGGG~~~~ 209 (251)
T PF02784_consen 197 LEFIDIGGGFGVP 209 (251)
T ss_dssp -SEEEEESSB-SS
T ss_pred ccEEEeeCCCCCC
Confidence 3599999998864
No 234
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=37.33 E-value=39 Score=27.68 Aligned_cols=11 Identities=9% Similarity=0.368 Sum_probs=9.1
Q ss_pred CCCCeEEEecC
Q 037090 145 ERLNQFVDVAD 155 (178)
Q Consensus 145 ~~~~~vVDVGG 155 (178)
.+..+|+||||
T Consensus 124 p~v~tIIDIGG 134 (293)
T TIGR03192 124 NAVRTILDMGG 134 (293)
T ss_pred CCCCEEEEeCC
Confidence 35789999999
No 235
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=36.85 E-value=50 Score=27.83 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=22.8
Q ss_pred CCCeEEEecCCccHHHHH--HHHhcCCCeEEE
Q 037090 146 RLNQFVDVADGLGENKNI--LLTKISIISLNT 175 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~--i~~~~P~l~~~v 175 (178)
+.-.|+=||||.|..+++ +.++.|.=+..+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgI 69 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGI 69 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEE
Confidence 445789999999988766 788888755444
No 236
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=36.85 E-value=28 Score=30.39 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=21.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCC
Q 037090 146 RLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
+...++|||-|+|.++...+++-.+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD 90 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD 90 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC
Confidence 4568999999999999998887644
No 237
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=36.78 E-value=37 Score=25.51 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=20.5
Q ss_pred cCCccHHHHHHHHhcCCCeEEEe
Q 037090 154 ADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 154 GGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
-||+|.-....+.|+|.+++.+.
T Consensus 64 iCGTGiG~siaANKv~GIRAA~~ 86 (171)
T PRK08622 64 ICGTGVGISNAVNKVPGIRSALV 86 (171)
T ss_pred EcCCcHHHHHHHhcCCCeEEEEe
Confidence 47899999999999999999875
No 238
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=36.28 E-value=76 Score=21.84 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=22.7
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHH-HHHHHHhcCCCeE
Q 037090 136 EILETYKGFERLNQFVDVADGLGEN-KNILLTKISIISL 173 (178)
Q Consensus 136 ~~~~~~~~~~~~~~vVDVGGg~G~~-~~~i~~~~P~l~~ 173 (178)
.+++.++.=++.-.++|+=||+=.. +..+..++|+++.
T Consensus 50 ~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~~~~~~v 88 (116)
T TIGR00824 50 AALADLDTEEEVLFLVDIFGGSPYNAAARIIVDKPHMDV 88 (116)
T ss_pred HHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhhcCCEEE
Confidence 3444454124556799995555554 4446677888753
No 239
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=35.87 E-value=54 Score=27.67 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=28.9
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccH----HHHHHHHhc---CCCeEEEe
Q 037090 135 KEILETYKGFERLNQFVDVADGLGE----NKNILLTKI---SIISLNTI 176 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~----~~~~i~~~~---P~l~~~v~ 176 (178)
..+++.+. =.+.-+|||+|-|.|. ++.+++++. |++|.|.|
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i 147 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGI 147 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEec
Confidence 45677766 4466799999999996 455566654 67777654
No 240
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=34.68 E-value=43 Score=27.34 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=24.9
Q ss_pred CCeEEEecCCccHH----HHHHHHhcCCCeEEEec
Q 037090 147 LNQFVDVADGLGEN----KNILLTKISIISLNTIV 177 (178)
Q Consensus 147 ~~~vVDVGGg~G~~----~~~i~~~~P~l~~~v~l 177 (178)
...++|||||.-.. +..|+..-|.++++++.
T Consensus 309 PANFLDvGGgV~EdqV~~Af~ilTaDPkVk~iLvN 343 (412)
T KOG1447|consen 309 PANFLDVGGGVKEDQVYQAFKILTADPKVKAILVN 343 (412)
T ss_pred CcceeeccCcccHHHHHHHhhhhccCCceeEEEEe
Confidence 46899999997643 55688899999999874
No 241
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=34.28 E-value=23 Score=27.83 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=18.9
Q ss_pred CC-CCCeEEEecCCccHHHHHHHHhc
Q 037090 144 FE-RLNQFVDVADGLGENKNILLTKI 168 (178)
Q Consensus 144 ~~-~~~~vVDVGGg~G~~~~~i~~~~ 168 (178)
|. +..+++|+|.|.|......+..+
T Consensus 109 w~~~~~~lLDlGAGdGeit~~m~p~f 134 (288)
T KOG3987|consen 109 WGQEPVTLLDLGAGDGEITLRMAPTF 134 (288)
T ss_pred cCCCCeeEEeccCCCcchhhhhcchH
Confidence 43 35789999999999887665443
No 242
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=34.27 E-value=23 Score=27.65 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=16.2
Q ss_pred CCCeEEEecCCccHHHHHHHHh
Q 037090 146 RLNQFVDVADGLGENKNILLTK 167 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~ 167 (178)
+..+.+|.|+|.|.....++..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~ 76 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLP 76 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCC
T ss_pred CcceEEecccccchhHHHHHHH
Confidence 4679999999999999877543
No 243
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=33.85 E-value=90 Score=24.61 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=13.0
Q ss_pred CCCCeEEEecCCccHHH
Q 037090 145 ERLNQFVDVADGLGENK 161 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~ 161 (178)
++-.-|+.||+|+|..-
T Consensus 75 ~~K~~vLEvgcGtG~Nf 91 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANF 91 (252)
T ss_pred cCccceEEecccCCCCc
Confidence 33456899999999864
No 244
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=33.55 E-value=49 Score=28.12 Aligned_cols=24 Identities=13% Similarity=0.457 Sum_probs=19.3
Q ss_pred CCCCeEEEecC------------------------CccHHHHHHHHhc
Q 037090 145 ERLNQFVDVAD------------------------GLGENKNILLTKI 168 (178)
Q Consensus 145 ~~~~~vVDVGG------------------------g~G~~~~~i~~~~ 168 (178)
.+..+|+|||| |+|.|+-.++++.
T Consensus 228 p~~dtIiDIGGQD~K~i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~L 275 (396)
T COG1924 228 PDVDTVIDIGGQDSKVIKLEDGKVDDFTMNDKCAAGTGRFLEVIARRL 275 (396)
T ss_pred CCCcEEEEecCcceeEEEEeCCeeeeeEeccccccccchHHHHHHHHh
Confidence 35679999999 8888888877653
No 245
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=33.34 E-value=50 Score=28.44 Aligned_cols=11 Identities=9% Similarity=0.238 Sum_probs=9.2
Q ss_pred CCCCeEEEecC
Q 037090 145 ERLNQFVDVAD 155 (178)
Q Consensus 145 ~~~~~vVDVGG 155 (178)
.+..+|+||||
T Consensus 266 P~vrTIIDIGG 276 (432)
T TIGR02259 266 PGTRTVLDIGG 276 (432)
T ss_pred CCCCEEEEeCC
Confidence 45679999999
No 246
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=33.19 E-value=48 Score=26.87 Aligned_cols=10 Identities=30% Similarity=0.508 Sum_probs=8.9
Q ss_pred CeEEEecCCc
Q 037090 148 NQFVDVADGL 157 (178)
Q Consensus 148 ~~vVDVGGg~ 157 (178)
..++|||||+
T Consensus 127 ~~v~DiGGGS 136 (300)
T TIGR03706 127 GLVVDIGGGS 136 (300)
T ss_pred cEEEEecCCe
Confidence 4999999986
No 247
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=33.17 E-value=58 Score=27.55 Aligned_cols=29 Identities=10% Similarity=-0.062 Sum_probs=24.4
Q ss_pred CeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 148 NQFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 148 ~~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
-+|+|.-+|+|..++.++++-++.+-+++
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~ 74 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFA 74 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEE
Confidence 47999999999999999999776655544
No 248
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=32.79 E-value=1.3e+02 Score=24.55 Aligned_cols=52 Identities=12% Similarity=0.186 Sum_probs=32.6
Q ss_pred HHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090 120 NLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 120 ~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
......+....+.....+.+....+++...|+=||||.=.+..+|.+.||..
T Consensus 246 ~~v~~~i~~~~~~l~~~i~~~~~~~~~~~~I~~vGGGA~ll~~~Ik~~~~~~ 297 (318)
T PF06406_consen 246 DDVSEVIEEAVEELINRILRELGDFSDIDRIFFVGGGAILLKDAIKEAFPVP 297 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-S-SEEEEESTTHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEECCcHHHHHHHHHHhhCCC
Confidence 3344444444333344455544337778899999999999999999999853
No 249
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=32.71 E-value=71 Score=27.39 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=22.1
Q ss_pred CCCCeEEEecCCccHHHHHHHHhcCCCe
Q 037090 145 ERLNQFVDVADGLGENKNILLTKISIIS 172 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~ 172 (178)
.+..+++=+|||.|..+.+++ |||...
T Consensus 288 ~~a~~vLvlGGGDGLAlRell-kyP~~~ 314 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELL-KYPQVE 314 (508)
T ss_pred cccceEEEEcCCchHHHHHHH-hCCCcc
Confidence 466799999999999998876 688654
No 250
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=32.33 E-value=50 Score=25.35 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=19.3
Q ss_pred CCCCCeEEEecCCccHHHHHHHHhcCC
Q 037090 144 FERLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 144 ~~~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
+.+..+|+|.-+|.|.++..+++..+.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~ 125 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKA 125 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-S
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCc
Confidence 345579999999999999999985544
No 251
>PRK13660 hypothetical protein; Provisional
Probab=31.79 E-value=59 Score=24.63 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=22.9
Q ss_pred EEEecCCccH------HHHHHHHhcCCCeEEEecC
Q 037090 150 FVDVADGLGE------NKNILLTKISIISLNTIVT 178 (178)
Q Consensus 150 vVDVGGg~G~------~~~~i~~~~P~l~~~v~l~ 178 (178)
-+=+||.-|. ...++.+.||+++.+++++
T Consensus 45 wfi~ggalG~d~wAaEvvl~LK~~yp~lkL~~~~P 79 (182)
T PRK13660 45 WVIISGQLGVELWAAEVVLELKEEYPDLKLAVITP 79 (182)
T ss_pred EEEECCcchHHHHHHHHHHHHHhhCCCeEEEEEeC
Confidence 5568888885 4557889999999998874
No 252
>PTZ00010 tubulin beta chain; Provisional
Probab=31.54 E-value=60 Score=28.12 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=26.4
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccH-----HHHHHHHhcCCC
Q 037090 135 KEILETYKGFERLNQFVDVADGLGE-----NKNILLTKISII 171 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~-----~~~~i~~~~P~l 171 (178)
+..++.+|.+.++-.+-.+|||+|. ++..|...||+.
T Consensus 121 rk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~~~ 162 (445)
T PTZ00010 121 RKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDR 162 (445)
T ss_pred hhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCCcc
Confidence 3445667767788899999999972 334577888853
No 253
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=31.44 E-value=1.6e+02 Score=25.31 Aligned_cols=36 Identities=11% Similarity=0.058 Sum_probs=26.2
Q ss_pred HHHHhcCCCCCCCeEEEecCCccHHHHHHHHhc-CCC
Q 037090 136 EILETYKGFERLNQFVDVADGLGENKNILLTKI-SII 171 (178)
Q Consensus 136 ~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~-P~l 171 (178)
.+...++.+.+.-.++=+||++|.++..++.++ |.+
T Consensus 172 ~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~ 208 (403)
T PF11144_consen 172 DLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWL 208 (403)
T ss_pred HHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccc
Confidence 455566644433357778999999999998887 665
No 254
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=31.38 E-value=1.2e+02 Score=24.13 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=34.3
Q ss_pred HHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEEE
Q 037090 126 MHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLNT 175 (178)
Q Consensus 126 M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v 175 (178)
|..+-++......+.. +.+..+|+.||=|-|.....|-++-|...-++
T Consensus 83 Mm~WEtpiMha~A~ai--~tkggrvLnVGFGMgIidT~iQe~~p~~H~Ii 130 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAI--STKGGRVLNVGFGMGIIDTFIQEAPPDEHWII 130 (271)
T ss_pred hhhhhhHHHHHHHHHH--hhCCceEEEeccchHHHHHHHhhcCCcceEEE
Confidence 4444444444444443 46778999999999999999999988876543
No 255
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=31.26 E-value=92 Score=21.44 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=21.9
Q ss_pred HHHHhcCCCCCCCeEEEe-cCCccHHHHHHHHhcCCCe
Q 037090 136 EILETYKGFERLNQFVDV-ADGLGENKNILLTKISIIS 172 (178)
Q Consensus 136 ~~~~~~~~~~~~~~vVDV-GGg~G~~~~~i~~~~P~l~ 172 (178)
..++.++.-++.-.++|+ ||+.=.....+..++|++.
T Consensus 49 ~~i~~~~~~~~viil~Dl~GGSp~n~~~~~~~~~~~~~ 86 (122)
T cd00006 49 AALAELDSGEGVLILTDLFGGSPNNAAARLSMEHPPVE 86 (122)
T ss_pred HHHHHhCCCCcEEEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 344455523456689999 5555445566666666654
No 256
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=30.98 E-value=43 Score=24.29 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.4
Q ss_pred CCccHHHHHHHHhcCCCeEEEe
Q 037090 155 DGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 155 Gg~G~~~~~i~~~~P~l~~~v~ 176 (178)
||+|.-....+.|+|.+++.+.
T Consensus 62 CGtGiG~siaANKv~GIRaA~~ 83 (141)
T PRK12613 62 DAYGAGPFMVATKLKGMVAAEV 83 (141)
T ss_pred cCCCHhHhhhhhcCCCeEEEEE
Confidence 6888888999999999998874
No 257
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=30.97 E-value=47 Score=28.44 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=22.4
Q ss_pred HHHHhcCC--CCCCCeEEEecCCccHHHHHHHH
Q 037090 136 EILETYKG--FERLNQFVDVADGLGENKNILLT 166 (178)
Q Consensus 136 ~~~~~~~~--~~~~~~vVDVGGg~G~~~~~i~~ 166 (178)
.+...+++ ......++|+|+|.|+....++.
T Consensus 180 ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa 212 (419)
T KOG3924|consen 180 QLRSIVDELKLGPADVFMDLGSGVGQLVCFVAA 212 (419)
T ss_pred HHHHHHHHhccCCCCcccCCCcccchhhHHHHH
Confidence 44444442 56678999999999998776654
No 258
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=30.92 E-value=2.3e+02 Score=21.21 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=36.1
Q ss_pred ccChHHHHHHHHHHHhhh-----HHhHHHHHHhcCCCCCCCeEEE--ecCCccHHHHH-HHHhcCCCeEEEe
Q 037090 113 AKDEKINNLFNQSMHNHT-----TIVMKEILETYKGFERLNQFVD--VADGLGENKNI-LLTKISIISLNTI 176 (178)
Q Consensus 113 ~~~p~~~~~F~~~M~~~~-----~~~~~~~~~~~~~~~~~~~vVD--VGGg~G~~~~~-i~~~~P~l~~~v~ 176 (178)
..++-+.+...++|.... .....+.+....-....-.||| +|+|+|...++ |.++.|+.+.+|+
T Consensus 16 dDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvL 87 (182)
T COG4567 16 DDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVL 87 (182)
T ss_pred cCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcCCcceEEEE
Confidence 345555666777776521 1111222222211223346777 58999987766 7778899887664
No 259
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=30.87 E-value=43 Score=24.30 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.3
Q ss_pred CCccHHHHHHHHhcCCCeEEEe
Q 037090 155 DGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 155 Gg~G~~~~~i~~~~P~l~~~v~ 176 (178)
||+|.-....+.|+|.+++.+.
T Consensus 63 CGtGiG~siaANK~~GIRAA~~ 84 (141)
T TIGR01118 63 DAYGAGSFMVATKIKGMIAAEV 84 (141)
T ss_pred cCCCHhHhhhhhcCCCeEEEEE
Confidence 6888888899999999998874
No 260
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=30.10 E-value=90 Score=25.35 Aligned_cols=32 Identities=9% Similarity=0.028 Sum_probs=26.0
Q ss_pred CCCCeEEEecCCcc-----------HHHHHHHHhcCCCeEEEe
Q 037090 145 ERLNQFVDVADGLG-----------ENKNILLTKISIISLNTI 176 (178)
Q Consensus 145 ~~~~~vVDVGGg~G-----------~~~~~i~~~~P~l~~~v~ 176 (178)
.+...++..|.+.+ .++..++++||+++.++.
T Consensus 156 ~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl~ 198 (293)
T COG2159 156 LGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFPELKIVLG 198 (293)
T ss_pred cCCCEEEEeCCCCCCcccccCCCCchHHHHHHHHCCCCcEEEE
Confidence 34567889998777 688899999999998863
No 261
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.02 E-value=76 Score=25.13 Aligned_cols=31 Identities=3% Similarity=-0.069 Sum_probs=27.1
Q ss_pred CCCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 145 ERLNQFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
-+.++.+|||+=+|.-+.+++.+-|+ .|+|+
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~-dGrv~ 102 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPE-DGRVV 102 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCC-CceEE
Confidence 34689999999999999999999998 77665
No 262
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=29.75 E-value=52 Score=21.71 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=11.2
Q ss_pred EEEecCCccHHH
Q 037090 150 FVDVADGLGENK 161 (178)
Q Consensus 150 vVDVGGg~G~~~ 161 (178)
++|+|+|.|...
T Consensus 52 ~ld~~~g~g~~~ 63 (257)
T COG0500 52 VLDIGCGTGRLA 63 (257)
T ss_pred eEEecCCcCHHH
Confidence 999999999976
No 263
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=29.54 E-value=65 Score=26.10 Aligned_cols=31 Identities=3% Similarity=-0.045 Sum_probs=26.0
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 146 RLNQFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
+...|+-.|......+..++++||+.++.++
T Consensus 61 g~dlIi~~g~~~~~~~~~vA~~yPd~~F~~~ 91 (306)
T PF02608_consen 61 GYDLIIGHGFEYSDALQEVAKEYPDTKFIII 91 (306)
T ss_dssp T-SEEEEESGGGHHHHHHHHTC-TTSEEEEE
T ss_pred CCCEEEEccHHHHHHHHHHHHHCCCCEEEEE
Confidence 4458999999999999999999999998775
No 264
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=29.00 E-value=75 Score=25.01 Aligned_cols=31 Identities=3% Similarity=0.023 Sum_probs=26.2
Q ss_pred CCCeEEEecCCccHHHHHHHHhcCCCeEEEe
Q 037090 146 RLNQFVDVADGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 146 ~~~~vVDVGGg~G~~~~~i~~~~P~l~~~v~ 176 (178)
+...|+-.|.........++++||+.++.++
T Consensus 57 g~dlIi~~g~~~~~~~~~vA~~~p~~~F~~~ 87 (258)
T cd06353 57 GYDLIFGTSFGFMDAALKVAKEYPDVKFEHC 87 (258)
T ss_pred CCCEEEECchhhhHHHHHHHHHCCCCEEEEC
Confidence 3458888999999999999999999987764
No 265
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=28.86 E-value=27 Score=24.75 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=9.4
Q ss_pred CCCeEEEecCCc
Q 037090 146 RLNQFVDVADGL 157 (178)
Q Consensus 146 ~~~~vVDVGGg~ 157 (178)
...-.||||||-
T Consensus 56 ~~~gkV~lGGGl 67 (126)
T PF12757_consen 56 ENAGKVNLGGGL 67 (126)
T ss_pred cCCCeeeCCCCc
Confidence 445799999985
No 266
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=28.74 E-value=75 Score=25.23 Aligned_cols=26 Identities=4% Similarity=-0.118 Sum_probs=22.5
Q ss_pred CCCCeEEEecCCccHHHHHHHHhcCC
Q 037090 145 ERLNQFVDVADGLGENKNILLTKISI 170 (178)
Q Consensus 145 ~~~~~vVDVGGg~G~~~~~i~~~~P~ 170 (178)
.+.++|++||-+.|.-++.+++..|.
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~ 103 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPE 103 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCC
Confidence 45679999999999999999998763
No 267
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=28.66 E-value=88 Score=22.96 Aligned_cols=32 Identities=6% Similarity=-0.033 Sum_probs=21.4
Q ss_pred CCCeEEEecCCccH--------------HHHHHHHhcCCCeEEEec
Q 037090 146 RLNQFVDVADGLGE--------------NKNILLTKISIISLNTIV 177 (178)
Q Consensus 146 ~~~~vVDVGGg~G~--------------~~~~i~~~~P~l~~~v~l 177 (178)
+...+||+||+.=. -.+....+.|+++++++.
T Consensus 35 ~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd 80 (153)
T PF00549_consen 35 GPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD 80 (153)
T ss_dssp TEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred CceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence 34589999988763 233445566888887764
No 268
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=28.47 E-value=45 Score=24.23 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.3
Q ss_pred CCccHHHHHHHHhcCCCeEEEe
Q 037090 155 DGLGENKNILLTKISIISLNTI 176 (178)
Q Consensus 155 Gg~G~~~~~i~~~~P~l~~~v~ 176 (178)
||+|.-....+.|+|++++.+.
T Consensus 63 CGTGiG~siaANK~~GIRAA~~ 84 (142)
T PRK08621 63 DAYGAGSFMVATKIKGMVAAEV 84 (142)
T ss_pred cCCChhhhhhhhcCCCeEEEEE
Confidence 6888888999999999998764
No 269
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=28.12 E-value=73 Score=19.57 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=13.3
Q ss_pred ecCCccHHHHH-HHHhcCCCeEEEe
Q 037090 153 VADGLGENKNI-LLTKISIISLNTI 176 (178)
Q Consensus 153 VGGg~G~~~~~-i~~~~P~l~~~v~ 176 (178)
||||.+.++.+ .+++. ..+.+|+
T Consensus 2 iGaG~sGl~aA~~L~~~-g~~v~v~ 25 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKA-GYRVTVF 25 (68)
T ss_dssp ES-SHHHHHHHHHHHHT-TSEEEEE
T ss_pred EeeCHHHHHHHHHHHHC-CCcEEEE
Confidence 78887666665 33333 6666664
No 270
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=27.68 E-value=83 Score=25.15 Aligned_cols=41 Identities=10% Similarity=0.218 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCcc
Q 037090 115 DEKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLG 158 (178)
Q Consensus 115 ~p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G 158 (178)
|+. .+.|.+++.......+-...... .+....++||||+..
T Consensus 9 n~~-~~~~~~~~~~~d~~~i~~~A~~~--~~~GAdiIDVg~~~~ 49 (261)
T PRK07535 9 NGT-RKSIAEAIEAKDAAFIQKLALKQ--AEAGADYLDVNAGTA 49 (261)
T ss_pred chh-hHHHHHHHHcCCHHHHHHHHHHH--HHCCCCEEEECCCCC
Confidence 555 56777777665433322222221 244567999999875
No 271
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=27.41 E-value=32 Score=28.63 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=14.2
Q ss_pred HHHHHhcCCC-CCCCeEEEecCCc
Q 037090 135 KEILETYKGF-ERLNQFVDVADGL 157 (178)
Q Consensus 135 ~~~~~~~~~~-~~~~~vVDVGGg~ 157 (178)
..+-...|-+ ....-|||||||+
T Consensus 141 AAIGaglpi~ep~G~mvvDIGgGT 164 (342)
T COG1077 141 AAIGAGLPIMEPTGSMVVDIGGGT 164 (342)
T ss_pred HHhcCCCcccCCCCCEEEEeCCCc
Confidence 3344444422 2347899999997
No 272
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=24.75 E-value=3.2e+02 Score=22.64 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCC
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
...+...++...+...|+=+|||.-.+-..|.+.||++
T Consensus 279 ~~~i~~~~~~~~~~d~IiL~GGGA~ll~~~lk~~f~~~ 316 (344)
T PRK13917 279 MSGFEIAVGNINSFDRVIVTGGGANIFFDSLSHWYSDV 316 (344)
T ss_pred HHHHHHHhcccCCCCEEEEECCcHHHHHHHHHHHcCCe
Confidence 33444444335567789999999988888899999986
No 273
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=24.56 E-value=1.2e+02 Score=23.40 Aligned_cols=29 Identities=17% Similarity=-0.002 Sum_probs=21.2
Q ss_pred CeEEEec--CCccHHHH--HHHHhcCCCeEEEe
Q 037090 148 NQFVDVA--DGLGENKN--ILLTKISIISLNTI 176 (178)
Q Consensus 148 ~~vVDVG--Gg~G~~~~--~i~~~~P~l~~~v~ 176 (178)
-.++|+. |+.|.-.. .+.+.+|+++.+++
T Consensus 55 vvllDi~~p~~~G~~~~~~~i~~~~p~~~vvvl 87 (216)
T PRK10100 55 IILLDMMEADKKLIHYWQDTLSRKNNNIKILLL 87 (216)
T ss_pred EEEEECCCCCccHHHHHHHHHHHhCCCCcEEEE
Confidence 4789997 56777553 47788999887776
No 274
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=23.97 E-value=98 Score=24.57 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccH
Q 037090 120 NLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGE 159 (178)
Q Consensus 120 ~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~ 159 (178)
+.|.+++.......+-.....+ .+....++||||+.|.
T Consensus 14 ~~~~~~~~~~~~d~~~~~A~~~--~~~GAdiIDIG~~~~~ 51 (252)
T cd00740 14 KKFRELIKAEDYDEALDVARQQ--VEGGAQILDLNVDYGG 51 (252)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH--HHCCCCEEEECCCCCC
Confidence 4566655554322222222222 2445679999998874
No 275
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=23.26 E-value=2.3e+02 Score=24.37 Aligned_cols=45 Identities=7% Similarity=0.117 Sum_probs=27.7
Q ss_pred HHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHHHH-HHHhcC
Q 037090 121 LFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENKNI-LLTKIS 169 (178)
Q Consensus 121 ~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~-i~~~~P 169 (178)
.....|.. .....+.+.|+ -.+..-|+-+|||.|..+.. +.+..|
T Consensus 72 ~ai~~M~~---ga~~~v~~l~~-~g~i~Gvi~~GGs~GT~lat~aMr~LP 117 (403)
T PF06792_consen 72 EAIEAMAR---GAARFVSDLYD-EGKIDGVIGIGGSGGTALATAAMRALP 117 (403)
T ss_pred HHHHHHHH---HHHHHHHHHHh-cCCccEEEEecCCccHHHHHHHHHhCC
Confidence 34444433 33333555565 45566899999999987665 555555
No 276
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=22.85 E-value=29 Score=19.40 Aligned_cols=10 Identities=30% Similarity=0.235 Sum_probs=5.2
Q ss_pred HHHHhcCCCe
Q 037090 163 ILLTKISIIS 172 (178)
Q Consensus 163 ~i~~~~P~l~ 172 (178)
+|+++||.++
T Consensus 21 ~IL~k~PeIk 30 (39)
T PF08557_consen 21 EILKKHPEIK 30 (39)
T ss_pred HHHHhChHHH
Confidence 4555555543
No 277
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=22.83 E-value=1e+02 Score=25.79 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=10.1
Q ss_pred CeEEEecCCccH
Q 037090 148 NQFVDVADGLGE 159 (178)
Q Consensus 148 ~~vVDVGGg~G~ 159 (178)
-.++|||||-|.
T Consensus 206 ~~~idiGGGf~~ 217 (368)
T cd06840 206 VRILNVGGGLGI 217 (368)
T ss_pred CCEEEecCcccC
Confidence 469999999865
No 278
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=22.57 E-value=83 Score=27.23 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=30.3
Q ss_pred HHHHHHhcCCCCCCCeEEEecCCccHHHHHHHHhcCCCeEE
Q 037090 134 MKEILETYKGFERLNQFVDVADGLGENKNILLTKISIISLN 174 (178)
Q Consensus 134 ~~~~~~~~~~~~~~~~vVDVGGg~G~~~~~i~~~~P~l~~~ 174 (178)
....++..+ ..+..+|+|.=||.|.++..++++.-.+.|+
T Consensus 282 ~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gv 321 (432)
T COG2265 282 YETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRVKKVHGV 321 (432)
T ss_pred HHHHHHHHh-hcCCCEEEEeccCCChhhhhhcccCCEEEEE
Confidence 344445544 4566799999999999999999887776665
No 279
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=22.38 E-value=1.9e+02 Score=23.03 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=29.8
Q ss_pred HHHhcCCCCCC-CeEEEecCCccHHHHHHHHhcCCCeEEEecC
Q 037090 137 ILETYKGFERL-NQFVDVADGLGENKNILLTKISIISLNTIVT 178 (178)
Q Consensus 137 ~~~~~~~~~~~-~~vVDVGGg~G~~~~~i~~~~P~l~~~v~l~ 178 (178)
++.... |..+ -.|||-.-|+|..-..+.+.+|+ +.|++|
T Consensus 158 ll~~~~-~~~~D~vIID~PP~~g~~d~~i~~~~~~--g~viVt 197 (265)
T COG0489 158 LLEDVL-WGEYDYVIIDTPPGTGDADATVLQRIPD--GVVIVT 197 (265)
T ss_pred HHHHHh-ccCCCEEEEeCCCCchHHHHHHHhccCC--eEEEEe
Confidence 444433 4433 47999999999999999999999 777764
No 280
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=21.95 E-value=2.8e+02 Score=21.13 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=17.7
Q ss_pred EEe--cCCccHH-HHHHHHhcCCCeEEEe
Q 037090 151 VDV--ADGLGEN-KNILLTKISIISLNTI 176 (178)
Q Consensus 151 VDV--GGg~G~~-~~~i~~~~P~l~~~v~ 176 (178)
+|+ .|..|.- ...+.+++|.++.+++
T Consensus 46 ~d~~mp~~~Gl~~~~~l~~~~p~~~iIvl 74 (207)
T PRK11475 46 SAMRSERREGLSCLTELAIKFPRMRRLVI 74 (207)
T ss_pred cccCCCCCCHHHHHHHHHHHCCCCCEEEE
Confidence 476 3455554 4557788999987776
No 281
>PTZ00335 tubulin alpha chain; Provisional
Probab=21.67 E-value=1.4e+02 Score=25.97 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=27.0
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccHH-----HHHHHHhcCCC
Q 037090 135 KEILETYKGFERLNQFVDVADGLGEN-----KNILLTKISII 171 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~~-----~~~i~~~~P~l 171 (178)
+..++..|.+.++-.+-.+|||+|.- +..|...||+.
T Consensus 123 r~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp~~ 164 (448)
T PTZ00335 123 RKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKK 164 (448)
T ss_pred HHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHhcccc
Confidence 44557777577888999999998743 33478888864
No 282
>PLN02661 Putative thiazole synthesis
Probab=21.66 E-value=1.5e+02 Score=25.04 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=21.4
Q ss_pred eEEEecCCccHHHHHHHHh-cCCCeEEEe
Q 037090 149 QFVDVADGLGENKNILLTK-ISIISLNTI 176 (178)
Q Consensus 149 ~vVDVGGg~G~~~~~i~~~-~P~l~~~v~ 176 (178)
-|+-||||...+..++.-+ .|+++.+|+
T Consensus 94 DVlIVGaG~AGl~AA~~La~~~g~kV~vi 122 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKNPNVKVAII 122 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCCeEEEE
Confidence 4888999988888776554 688887765
No 283
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=21.46 E-value=53 Score=26.27 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=25.4
Q ss_pred HHHHHhhhH--HhHHHHHHhcCC-CC---CCCeEEEecCCccHHHHHHHHhcCCC
Q 037090 123 NQSMHNHTT--IVMKEILETYKG-FE---RLNQFVDVADGLGENKNILLTKISII 171 (178)
Q Consensus 123 ~~~M~~~~~--~~~~~~~~~~~~-~~---~~~~vVDVGGg~G~~~~~i~~~~P~l 171 (178)
...|..++. -..+.+-+.|+. |. ...+|+|||||-=-++.-.....|..
T Consensus 76 r~lL~~HaST~ERl~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a 130 (251)
T PF07091_consen 76 RRLLAGHASTRERLPNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGA 130 (251)
T ss_dssp HHHHHTSHHHHCCGGGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-
T ss_pred HHHHhhccchhhhhhhHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCc
Confidence 346666532 223334444442 33 36799999999776666555444443
No 284
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=20.82 E-value=49 Score=27.35 Aligned_cols=12 Identities=8% Similarity=0.254 Sum_probs=10.1
Q ss_pred CeEEEecCCccH
Q 037090 148 NQFVDVADGLGE 159 (178)
Q Consensus 148 ~~vVDVGGg~G~ 159 (178)
-.++|||||-|.
T Consensus 189 ~~~lDiGGGf~v 200 (346)
T cd06829 189 LKWLNLGGGHHI 200 (346)
T ss_pred CcEEEcCCCcCC
Confidence 459999999975
No 285
>PRK05354 arginine decarboxylase; Provisional
Probab=20.78 E-value=1.4e+02 Score=27.20 Aligned_cols=12 Identities=50% Similarity=0.855 Sum_probs=10.0
Q ss_pred CeEEEecCCccH
Q 037090 148 NQFVDVADGLGE 159 (178)
Q Consensus 148 ~~vVDVGGg~G~ 159 (178)
-..||||||-|.
T Consensus 284 l~~LDIGGGlgV 295 (634)
T PRK05354 284 IQYLDVGGGLGV 295 (634)
T ss_pred CCEEEeCCCcCc
Confidence 459999999974
No 286
>PLN00220 tubulin beta chain; Provisional
Probab=20.56 E-value=2e+02 Score=24.94 Aligned_cols=37 Identities=8% Similarity=0.066 Sum_probs=27.6
Q ss_pred HHHHHhcCCCCCCCeEEEecCCccH-----HHHHHHHhcCCC
Q 037090 135 KEILETYKGFERLNQFVDVADGLGE-----NKNILLTKISII 171 (178)
Q Consensus 135 ~~~~~~~~~~~~~~~vVDVGGg~G~-----~~~~i~~~~P~l 171 (178)
+..++..|.+.++-.+-.+|||+|. ++..|.+.||+.
T Consensus 121 r~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~~~ 162 (447)
T PLN00220 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (447)
T ss_pred HHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcccc
Confidence 4556777767888899999999953 334578889875
No 287
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=20.30 E-value=1.5e+02 Score=25.56 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=23.5
Q ss_pred CCeEEEecCCccHH----HHHHHHhcCCCeEEEec
Q 037090 147 LNQFVDVADGLGEN----KNILLTKISIISLNTIV 177 (178)
Q Consensus 147 ~~~vVDVGGg~G~~----~~~i~~~~P~l~~~v~l 177 (178)
...++|||||.-.- +..+..+.|+++++++.
T Consensus 318 pANFlD~GG~a~~~~v~~a~~ii~~d~~vk~iliN 352 (422)
T PLN00124 318 PANFLDVGGNASEQQVVEAFKILTSDDKVKAILVN 352 (422)
T ss_pred cceeeecCCCCCHHHHHHHHHHHhcCCCCcEEEEE
Confidence 46899999986543 44577778999998873
No 288
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=20.23 E-value=52 Score=27.60 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=10.2
Q ss_pred CeEEEecCCccH
Q 037090 148 NQFVDVADGLGE 159 (178)
Q Consensus 148 ~~vVDVGGg~G~ 159 (178)
-.++|||||-|.
T Consensus 208 ~~~IDiGGGf~v 219 (379)
T cd06836 208 ITRIDIGGGLPV 219 (379)
T ss_pred CcEEEeCCcccc
Confidence 469999999973
No 289
>KOG3456 consensus NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subunit [Energy production and conversion]
Probab=20.04 E-value=1e+02 Score=21.28 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHhhhHHhHHHHHHhcCCCCCCCeEEEecCCccHHH
Q 037090 116 EKINNLFNQSMHNHTTIVMKEILETYKGFERLNQFVDVADGLGENK 161 (178)
Q Consensus 116 p~~~~~F~~~M~~~~~~~~~~~~~~~~~~~~~~~vVDVGGg~G~~~ 161 (178)
.-+..+|..+|.......+=.+++..|..+=.++||-.-||+|.++
T Consensus 46 Dyr~~rf~~~kk~vn~n~~m~LI~e~Pp~e~d~RVV~CdGg~~aLG 91 (120)
T KOG3456|consen 46 DYRGNRFVKWKKDVNENSAMELISEVPPIEVDGRVVACDGGTPALG 91 (120)
T ss_pred HHhHHHHHhhhhhcCccchhhhhhcCChhhccceEEEecCCCCCCC
Confidence 3456789999999887666567776661222357777778888764
Done!