Query 037091
Match_columns 277
No_of_seqs 132 out of 1257
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:34:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 1.4E-31 3E-36 247.1 14.3 146 131-277 6-151 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 2.6E-28 5.6E-33 229.0 18.8 172 98-273 2-174 (308)
3 PRK08238 hypothetical protein; 99.9 2.2E-24 4.9E-29 213.1 13.3 188 62-265 145-338 (479)
4 PRK09573 (S)-2,3-di-O-geranylg 99.9 1.1E-22 2.4E-27 187.6 16.4 147 108-266 2-148 (279)
5 TIGR01476 chlor_syn_BchG bacte 99.9 3E-22 6.6E-27 184.9 14.4 144 110-259 1-146 (283)
6 PRK07566 bacteriochlorophyll/c 99.9 8.9E-22 1.9E-26 185.0 17.7 158 106-269 24-182 (314)
7 PRK12324 phosphoribose diphosp 99.9 7.7E-22 1.7E-26 184.4 16.8 148 106-264 8-157 (295)
8 PLN00012 chlorophyll synthetas 99.9 1.2E-21 2.7E-26 188.3 18.5 149 105-261 81-239 (375)
9 PRK12882 ubiA prenyltransferas 99.9 6.2E-22 1.3E-26 182.2 15.1 146 108-265 3-148 (276)
10 PRK12884 ubiA prenyltransferas 99.9 2.7E-21 5.9E-26 177.8 16.9 147 107-266 2-148 (279)
11 TIGR02056 ChlG chlorophyll syn 99.9 4.5E-21 9.7E-26 179.7 17.6 152 105-264 12-173 (306)
12 PRK12883 ubiA prenyltransferas 99.9 3.6E-21 7.8E-26 177.2 15.9 145 109-265 3-147 (277)
13 PRK12874 ubiA prenyltransferas 99.9 1.2E-20 2.6E-25 175.9 16.9 152 105-267 4-160 (291)
14 COG0382 UbiA 4-hydroxybenzoate 99.9 1.1E-20 2.4E-25 175.1 16.6 151 106-269 7-162 (289)
15 PRK12869 ubiA protoheme IX far 99.9 2.3E-20 4.9E-25 172.7 18.3 148 109-268 2-152 (279)
16 PRK12392 bacteriochlorophyll c 99.9 4.4E-20 9.6E-25 175.1 19.5 155 105-264 8-170 (331)
17 PRK13106 ubiA prenyltransferas 99.9 2.8E-20 6E-25 174.3 17.4 149 105-266 11-161 (300)
18 PRK13362 protoheme IX farnesyl 99.8 4.2E-20 9E-25 173.5 18.5 151 106-267 10-163 (306)
19 TIGR01475 ubiA_other putative 99.8 2.5E-20 5.5E-25 172.2 16.4 145 109-266 2-148 (282)
20 PRK04375 protoheme IX farnesyl 99.8 4.9E-20 1.1E-24 171.8 17.6 140 107-258 8-150 (296)
21 PRK13595 ubiA prenyltransferas 99.8 7.2E-20 1.6E-24 170.7 18.0 141 106-254 9-153 (292)
22 PRK12895 ubiA prenyltransferas 99.8 3.5E-20 7.6E-25 172.6 15.6 148 108-269 2-151 (286)
23 PRK12847 ubiA 4-hydroxybenzoat 99.8 8.4E-20 1.8E-24 169.1 17.5 150 105-266 3-157 (285)
24 TIGR01473 cyoE_ctaB protoheme 99.8 8E-20 1.7E-24 168.7 17.0 148 110-268 1-151 (280)
25 PRK12886 ubiA prenyltransferas 99.8 9.8E-20 2.1E-24 169.7 16.9 149 106-268 5-155 (291)
26 PRK05951 ubiA prenyltransferas 99.8 1.2E-19 2.6E-24 169.3 16.5 155 107-269 2-165 (296)
27 PRK12870 ubiA 4-hydroxybenzoat 99.8 8.4E-20 1.8E-24 170.0 15.0 148 106-266 6-158 (290)
28 PRK12848 ubiA 4-hydroxybenzoat 99.8 2.6E-19 5.6E-24 165.8 15.6 148 107-267 3-155 (282)
29 PRK06080 1,4-dihydroxy-2-napht 99.8 4.2E-19 9E-24 164.5 16.4 149 109-266 3-159 (293)
30 PLN02809 4-hydroxybenzoate non 99.8 5.4E-19 1.2E-23 164.8 16.3 148 107-265 4-156 (289)
31 PRK12888 ubiA prenyltransferas 99.8 1.1E-18 2.3E-23 162.3 16.2 148 109-268 2-152 (284)
32 PRK12878 ubiA 4-hydroxybenzoat 99.8 8.7E-19 1.9E-23 165.0 15.7 150 105-265 26-183 (314)
33 PRK12876 ubiA prenyltransferas 99.8 1.6E-18 3.4E-23 162.4 16.4 154 107-269 2-161 (300)
34 TIGR01474 ubiA_proteo 4-hydrox 99.8 4.1E-18 8.8E-23 157.8 16.8 143 112-266 7-152 (281)
35 PRK12873 ubiA prenyltransferas 99.8 2.4E-18 5.2E-23 160.9 14.4 143 106-261 4-155 (294)
36 PRK13387 1,4-dihydroxy-2-napht 99.8 4.7E-18 1E-22 160.3 15.6 151 109-267 3-161 (317)
37 PLN02776 prenyltransferase 99.7 3.6E-17 7.9E-22 155.6 16.3 142 115-269 1-145 (341)
38 COG0109 CyoE Polyprenyltransfe 99.7 2E-17 4.3E-22 154.3 13.1 132 105-247 14-148 (304)
39 PF01040 UbiA: UbiA prenyltran 99.7 1.1E-16 2.3E-21 143.1 11.4 134 124-267 4-139 (257)
40 TIGR00751 menA 1,4-dihydroxy-2 99.7 1.1E-15 2.3E-20 142.4 15.9 142 117-267 1-156 (284)
41 PRK12871 ubiA prenyltransferas 99.7 1.8E-15 3.9E-20 141.7 16.5 123 107-233 3-140 (297)
42 PLN02922 prenyltransferase 99.7 2.2E-15 4.7E-20 142.2 17.0 150 107-268 13-171 (315)
43 PRK07419 1,4-dihydroxy-2-napht 99.7 2.5E-15 5.3E-20 141.2 16.3 153 106-268 9-167 (304)
44 PRK13592 ubiA prenyltransferas 99.7 5.2E-16 1.1E-20 145.0 11.0 102 148-261 46-152 (299)
45 PRK12875 ubiA prenyltransferas 99.6 2.7E-14 5.9E-19 132.9 16.6 135 106-252 5-146 (282)
46 PRK13105 ubiA prenyltransferas 99.6 5.6E-14 1.2E-18 130.9 16.2 143 110-264 2-150 (282)
47 TIGR02235 menA_cyano-plnt 1,4- 99.6 4.2E-14 9E-19 131.8 14.8 147 112-268 2-154 (285)
48 COG1575 MenA 1,4-dihydroxy-2-n 99.6 6E-14 1.3E-18 131.2 15.7 155 108-270 7-172 (303)
49 PRK12872 ubiA prenyltransferas 99.6 3.3E-14 7.1E-19 131.0 13.7 150 108-268 3-154 (285)
50 KOG1381 Para-hydroxybenzoate-p 99.5 3.7E-15 8.1E-20 137.0 2.2 152 100-262 55-213 (353)
51 PRK13591 ubiA prenyltransferas 99.4 3.2E-12 7E-17 120.3 15.7 101 155-262 65-168 (307)
52 KOG1380 Heme A farnesyltransfe 99.2 8.4E-12 1.8E-16 117.4 2.4 137 108-258 93-232 (409)
53 KOG4581 Predicted membrane pro 97.6 2E-05 4.2E-10 72.1 0.3 148 106-259 58-213 (359)
54 PRK07419 1,4-dihydroxy-2-napht 94.6 0.44 9.5E-06 45.2 11.2 45 157-204 183-228 (304)
55 PRK13387 1,4-dihydroxy-2-napht 94.1 0.27 5.9E-06 46.7 8.8 50 153-205 194-244 (317)
56 PRK13591 ubiA prenyltransferas 93.9 0.23 5.1E-06 47.3 7.8 69 166-234 197-271 (307)
57 TIGR02235 menA_cyano-plnt 1,4- 93.7 0.87 1.9E-05 42.7 11.2 49 155-206 168-217 (285)
58 COG1575 MenA 1,4-dihydroxy-2-n 93.6 0.72 1.6E-05 43.9 10.4 40 151-190 179-219 (303)
59 TIGR01475 ubiA_other putative 92.9 1.8 3.9E-05 40.1 11.9 36 154-189 164-200 (282)
60 PLN02922 prenyltransferase 92.6 0.58 1.3E-05 44.5 8.4 49 153-204 193-242 (315)
61 PRK12872 ubiA prenyltransferas 92.6 1.5 3.2E-05 40.4 10.9 36 155-190 168-204 (285)
62 PLN00012 chlorophyll synthetas 92.6 1.6 3.4E-05 42.7 11.5 35 156-190 260-295 (375)
63 PRK06080 1,4-dihydroxy-2-napht 92.4 3.1 6.7E-05 38.6 12.7 51 153-206 173-224 (293)
64 TIGR01474 ubiA_proteo 4-hydrox 91.1 2.3 5E-05 39.5 10.4 39 153-191 165-204 (281)
65 TIGR00751 menA 1,4-dihydroxy-2 90.8 2.8 6.1E-05 39.3 10.7 48 155-205 171-219 (284)
66 PRK13105 ubiA prenyltransferas 90.3 4.1 8.9E-05 38.3 11.3 56 155-213 167-223 (282)
67 TIGR02056 ChlG chlorophyll syn 90.2 2.9 6.3E-05 39.4 10.3 41 157-200 192-233 (306)
68 PRK07566 bacteriochlorophyll/c 90.2 3.5 7.6E-05 39.0 10.9 33 158-190 199-232 (314)
69 PRK12847 ubiA 4-hydroxybenzoat 89.8 3.6 7.9E-05 38.1 10.5 39 152-190 169-208 (285)
70 PRK12875 ubiA prenyltransferas 89.5 17 0.00037 34.1 14.7 52 155-209 172-224 (282)
71 TIGR01476 chlor_syn_BchG bacte 88.3 2.4 5.2E-05 39.2 8.2 31 159-189 172-203 (283)
72 PRK05951 ubiA prenyltransferas 88.3 16 0.00035 34.2 13.8 35 158-195 181-216 (296)
73 PRK12886 ubiA prenyltransferas 87.7 4.4 9.6E-05 38.0 9.6 37 154-190 168-205 (291)
74 PRK12848 ubiA 4-hydroxybenzoat 87.7 7.5 0.00016 36.1 11.1 40 152-191 166-206 (282)
75 PRK13106 ubiA prenyltransferas 87.2 4.3 9.2E-05 38.4 9.2 53 153-205 182-235 (300)
76 PRK12888 ubiA prenyltransferas 87.2 7.9 0.00017 36.2 10.9 39 152-190 163-202 (284)
77 PRK12871 ubiA prenyltransferas 86.8 5.8 0.00013 37.4 9.9 37 154-190 181-218 (297)
78 PRK12884 ubiA prenyltransferas 86.5 3.5 7.6E-05 37.9 8.1 34 156-189 163-197 (279)
79 PRK12887 ubiA tocopherol phyty 86.2 3.5 7.7E-05 39.0 8.1 38 153-190 187-225 (308)
80 PRK12392 bacteriochlorophyll c 86.2 3.4 7.4E-05 39.7 8.1 38 154-191 186-224 (331)
81 PRK12874 ubiA prenyltransferas 85.7 21 0.00044 33.6 12.9 37 154-190 173-210 (291)
82 PRK09573 (S)-2,3-di-O-geranylg 85.4 3.7 8E-05 37.9 7.7 35 155-189 161-196 (279)
83 PRK12870 ubiA 4-hydroxybenzoat 84.5 10 0.00022 35.5 10.2 42 152-193 170-212 (290)
84 PRK12882 ubiA prenyltransferas 82.2 7.4 0.00016 35.8 8.3 35 155-189 164-199 (276)
85 PRK12883 ubiA prenyltransferas 81.5 6.1 0.00013 36.4 7.4 32 159-190 165-197 (277)
86 PRK12878 ubiA 4-hydroxybenzoat 81.1 19 0.00041 34.2 10.8 37 154-190 198-235 (314)
87 PRK12895 ubiA prenyltransferas 80.9 21 0.00046 33.6 10.9 37 153-189 164-201 (286)
88 PRK12876 ubiA prenyltransferas 80.7 26 0.00057 33.3 11.5 36 156-191 180-216 (300)
89 COG0382 UbiA 4-hydroxybenzoate 77.7 31 0.00068 31.9 11.0 39 150-188 169-208 (289)
90 PLN02878 homogentisate phytylt 75.0 17 0.00038 34.3 8.4 34 156-189 164-198 (280)
91 PRK12873 ubiA prenyltransferas 67.2 78 0.0017 30.0 11.0 36 155-190 177-213 (294)
92 PF01040 UbiA: UbiA prenyltran 65.9 21 0.00045 31.5 6.6 29 157-185 155-184 (257)
93 PRK04375 protoheme IX farnesyl 64.7 80 0.0017 29.5 10.6 35 155-189 174-209 (296)
94 COG1295 Rbn Ribonuclease BN fa 57.2 1.2E+02 0.0027 28.4 10.4 23 153-175 111-133 (303)
95 PRK12869 ubiA protoheme IX far 51.4 1.6E+02 0.0035 27.2 10.1 23 167-189 178-201 (279)
96 PLN02809 4-hydroxybenzoate non 50.1 2.2E+02 0.0047 26.7 10.8 25 166-190 184-209 (289)
97 TIGR01473 cyoE_ctaB protoheme 48.2 2E+02 0.0043 26.5 10.1 21 169-189 179-200 (280)
98 TIGR00766 ribonuclease, putati 45.2 2.4E+02 0.0051 25.5 11.5 20 156-175 96-115 (263)
99 PRK04214 rbn ribonuclease BN/u 40.6 2.9E+02 0.0062 27.1 10.4 20 156-175 113-132 (412)
100 PRK01637 hypothetical protein; 35.4 3.6E+02 0.0078 24.9 10.8 22 155-176 104-125 (286)
101 PF09933 DUF2165: Predicted sm 35.3 3E+02 0.0065 23.9 11.1 52 157-209 13-75 (160)
102 PRK13595 ubiA prenyltransferas 35.3 1.6E+02 0.0035 27.9 7.4 53 158-213 179-232 (292)
103 PF01219 DAGK_prokar: Prokaryo 35.0 1.2E+02 0.0026 24.3 5.6 32 155-186 46-77 (104)
104 COG0818 DgkA Diacylglycerol ki 34.8 2.6E+02 0.0056 23.4 7.7 34 153-186 58-91 (123)
105 KOG2513 Protein required for m 33.5 3.4E+02 0.0073 28.7 9.8 42 150-191 486-530 (647)
106 PF04156 IncA: IncA protein; 30.0 3.1E+02 0.0067 23.4 7.9 20 250-269 42-61 (191)
107 TIGR00765 yihY_not_rbn YihY fa 29.2 4.3E+02 0.0093 23.8 10.5 25 152-176 92-116 (259)
108 PF06738 DUF1212: Protein of u 28.9 1.2E+02 0.0027 25.9 5.2 20 241-260 147-166 (193)
109 PF11990 DUF3487: Protein of u 28.6 2.6E+02 0.0056 23.1 6.7 34 175-210 8-41 (121)
110 PF13260 DUF4051: Protein of u 28.4 83 0.0018 22.2 3.2 13 260-272 13-25 (54)
111 TIGR00400 mgtE Mg2+ transporte 28.4 4.2E+02 0.0092 26.2 9.5 34 242-275 415-448 (449)
112 TIGR00267 conserved hypothetic 27.9 3.9E+02 0.0085 23.0 9.2 22 150-171 30-51 (169)
113 TIGR03750 conj_TIGR03750 conju 27.4 3E+02 0.0066 22.5 6.8 34 175-210 5-38 (111)
114 COG2431 Predicted membrane pro 26.4 2E+02 0.0043 27.5 6.3 36 197-234 171-206 (297)
115 PF04547 Anoctamin: Calcium-ac 26.0 1.4E+02 0.0031 29.3 5.6 42 151-192 328-372 (452)
116 PF13748 ABC_membrane_3: ABC t 25.0 3.9E+02 0.0085 24.7 7.8 45 166-210 168-222 (237)
117 PF10797 YhfT: Protein of unkn 24.6 2.5E+02 0.0054 28.1 6.8 43 150-203 7-53 (420)
118 COG4147 DhlC Predicted symport 23.1 1.7E+02 0.0037 30.1 5.5 53 152-211 357-409 (529)
119 KOG4112 Signal peptidase subun 23.1 2.8E+02 0.0061 22.3 5.6 56 186-244 19-75 (101)
120 KOG3146 Dolichyl pyrophosphate 23.0 6E+02 0.013 23.4 8.9 42 225-272 138-179 (228)
121 TIGR02762 TraL_TIGR type IV co 22.4 1.3E+02 0.0028 23.6 3.7 32 176-211 7-38 (95)
122 PRK13592 ubiA prenyltransferas 21.5 7.2E+02 0.016 23.8 9.6 53 154-210 181-233 (299)
123 PF06808 DctM: DctM-like trans 20.9 7E+02 0.015 24.4 9.4 84 150-233 171-257 (416)
124 PF10003 DUF2244: Integral mem 20.5 3.6E+02 0.0079 22.4 6.3 24 187-210 4-27 (140)
125 PRK09979 putative rho operon l 20.0 40 0.00087 21.2 0.3 14 5-18 11-24 (33)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=99.97 E-value=1.4e-31 Score=247.14 Aligned_cols=146 Identities=43% Similarity=0.776 Sum_probs=134.2
Q ss_pred HHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCcccCCccChHHHHHHHHHHHHHHHHHH
Q 037091 131 VSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMG 210 (277)
Q Consensus 131 g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~SG~IS~r~A~~l~~~ll~lgliLa 210 (277)
.+++|.+...+.++..+...+.++++++++|.+..++||++|+|+||+|||+||||||++|+++|..+..++.++|++++
T Consensus 6 ~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la 85 (280)
T PLN02878 6 VSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMG 85 (280)
T ss_pred HhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45666554456666667788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 037091 211 IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNP 277 (277)
Q Consensus 211 ~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~~~~~~~~~~~~ 277 (277)
+..+++++.++++.+++++++||.++| |+|+||+++++++|+.+++|+++++|+|.|||++++++|
T Consensus 86 ~~~g~~~l~~al~~~~~lg~~YS~~lp-~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~ 151 (280)
T PLN02878 86 WIVGSWPLFWALFVSFVLGTAYSINLP-LLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRP 151 (280)
T ss_pred HHHChHHHHHHHHHHHHHHHHHHccCC-CcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCc
Confidence 999998888888767799999999889 999999999999999999999999999999999999975
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=99.96 E-value=2.6e-28 Score=228.97 Aligned_cols=172 Identities=28% Similarity=0.505 Sum_probs=144.7
Q ss_pred hhhHhHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 037091 98 STSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPAD-FTPKLIIEAFKCMVPAIMMNNYANAINQLADVHID 176 (277)
Q Consensus 98 ~~~~~~~~~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~-~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiD 176 (277)
+++.+++..+.++.|++++|||+++++.++++.+++++.....+ .....+..++.++++..+++.+.+++||++|+|+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 35667788888999999999999999999998888776322111 11212334455566666677777779999999999
Q ss_pred ccCCCCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHH
Q 037091 177 KVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM 256 (277)
Q Consensus 177 rinkp~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~ 256 (277)
++|||+||++||++|+++++.+++++.++|+++++..|++.+.++++ +.+++++||. | |+|+||+|++++++++++
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~-~~~lg~~Ys~--p-P~rlKr~~~~~~~~i~~~ 157 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGI-SLLIGTAYSL--P-PIRLKRFPLLAALCIFTV 157 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHcC--C-chhhcccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999887777775 8889999996 8 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037091 257 NGLLLLFPFFIHFQKIV 273 (277)
Q Consensus 257 ~g~lv~~g~~~~~~~~~ 273 (277)
+|..+++|+|+|++...
T Consensus 158 ~g~i~~~g~~~~~~~~~ 174 (308)
T PRK12887 158 RGVIVNLGLFLHFQWLL 174 (308)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998654
No 3
>PRK08238 hypothetical protein; Validated
Probab=99.91 E-value=2.2e-24 Score=213.08 Aligned_cols=188 Identities=16% Similarity=0.216 Sum_probs=151.9
Q ss_pred ccCCcccccccccchhccccccccccCC--CCCcchhh--hhhHhHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhcCC
Q 037091 62 IGHSEDLVINRNHKLLSKSTVALAAQDG--YSSESELV--STSFMQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQ 137 (277)
Q Consensus 62 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~ 137 (277)
+||+.. |+++|+.+..+..++++ +.++++.. +...+++.+.++++|++++|||+|.++++.++ +.+++..
T Consensus 145 vGDS~~-----Dlp~~~~A~~av~Vn~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~ 218 (479)
T PRK08238 145 AGNSAA-----DLPVWAAARRAIVVGASPGVARAARALGPVERVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ 218 (479)
T ss_pred ecCCHH-----HHHHHHhCCCeEEECCCHHHHHHHHHcCCcceecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc
Confidence 699999 99999999999877554 44444332 55667777788999999999999999998755 5665532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC--CCCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhH
Q 037091 138 NPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRS 215 (277)
Q Consensus 138 ~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrin--kp~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~ 215 (277)
.. ++..+..+++++++..++.+++|++||++|+|+||+| ||+||+|||++|+++|+.++.+++++|+++++++|+
T Consensus 219 -~~--~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~ 295 (479)
T PRK08238 219 -FG--DLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGP 295 (479)
T ss_pred -cC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11 3322335677888999999999999999999999998 789999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 037091 216 PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF 265 (277)
Q Consensus 216 ~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~ 265 (277)
.+.++.+ +++++.++|| +++||+++++.+++++.++.-+..|.
T Consensus 296 ~~~~~~~-~~~~~~~~Ys------~~lKr~~~~~~~~la~~~~lr~~~G~ 338 (479)
T PRK08238 296 AFLLVLL-AYLALTLAYS------LRLKRKVLVDVLTLAALYTLRIIAGA 338 (479)
T ss_pred HHHHHHH-HHHHHHHHhh------HHhcCCccccchHHHHHHHHHHHHHH
Confidence 6555544 5888899998 46999999999988887776555553
No 4
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.90 E-value=1.1e-22 Score=187.63 Aligned_cols=147 Identities=20% Similarity=0.357 Sum_probs=127.5
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCcccC
Q 037091 108 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLAC 187 (277)
Q Consensus 108 ~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~S 187 (277)
++++|++++||+++...+++.+.|.+++.+. ..++ ..+++++++++++++++|++|||+|+|+|++|+|+||+|+
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~--~~~~---~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNF--KIDL---KGIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccC--Ccch---HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence 3678999999999999999999998888431 2233 2356788999999999999999999999999999999999
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 037091 188 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF 266 (277)
Q Consensus 188 G~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~ 266 (277)
|++|+++++.++.++.++++++++++|+++..++++ +.+++++||. ++||++.++++.++...|..+..|..
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~-~~~~~~~Ys~------~lKr~~~~~~~~vg~~~G~~~~~g~~ 148 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIALL-NSILLYLYAK------DLKKTGLIGNLIVAYLTGLSFIFGGL 148 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH------HHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888886 6667889982 58999999999999999977666653
No 5
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.88 E-value=3e-22 Score=184.90 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=119.7
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCcccCC
Q 037091 110 DAFYRLTRPYSCVSIIAALLSVSLLPLQNPAD-FTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACG 188 (277)
Q Consensus 110 ~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~-~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~SG 188 (277)
++|++++||+++...+.++++|.+++....++ +++. ..++.++++..++++++|++|||+|+|+|++|+|+||+++|
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~--~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWW--LMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHH--HHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 35889999999999999999999887322222 3332 22444678899999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHH
Q 037091 189 DFSMGEGLAITIASPLMAVAMGIMLRSPP-LVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL 259 (277)
Q Consensus 189 ~IS~r~A~~l~~~ll~lgliLa~~l~~~~-lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~ 259 (277)
++|++++..++.++.+++++++++++.+. ..++++ +++.+++||. | |+++||+++++++.++...+.
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~-~~~~~~~Ys~--~-p~~lk~~~~~g~~~vg~~~~~ 146 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVV-GIVLAVIYSM--P-PIKLKRNGWLGPPAVGLSYEG 146 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhheecC--c-hhhhccCCCccHHHHHHHHHH
Confidence 99999999999999999999998887776 555554 7778999996 7 999999998898888876553
No 6
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.88 E-value=8.9e-22 Score=185.04 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=126.2
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCc
Q 037091 106 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPK-LIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLP 184 (277)
Q Consensus 106 ~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~-~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RP 184 (277)
+++++.|++++||+++..++++.++|.+.+.. .++... .+..++.+++++.++++++|++|||+|+|+|++|+|+||
T Consensus 24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rp 101 (314)
T PRK07566 24 TSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRP 101 (314)
T ss_pred chHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCC
Confidence 35678999999999999998888877776521 122211 111134456778889999999999999999999999999
Q ss_pred ccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHH
Q 037091 185 LACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP 264 (277)
Q Consensus 185 L~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g 264 (277)
+++|++|+++++.++.++.++++++++.+|.+...++++ +++.+++||. | |+++||++.++++.++...|.+...+
T Consensus 102 l~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~-~~~~~~~Yt~--g-P~~lK~~~~~g~i~vg~~~g~~~~~~ 177 (314)
T PRK07566 102 IPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALL-GLFLAWIYSA--P-PLRLKQNGWLGNYAVGLSYEGLPWWA 177 (314)
T ss_pred CCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH-HHHHHHHhcC--C-ccccccccchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999899888777775 7777999997 7 89999999999998888776544333
Q ss_pred HHHHH
Q 037091 265 FFIHF 269 (277)
Q Consensus 265 ~~~~~ 269 (277)
-+..+
T Consensus 178 g~~~~ 182 (314)
T PRK07566 178 GAAAF 182 (314)
T ss_pred HHHHh
Confidence 33333
No 7
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=7.7e-22 Score=184.40 Aligned_cols=148 Identities=16% Similarity=0.288 Sum_probs=119.1
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC--CCCC
Q 037091 106 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPHL 183 (277)
Q Consensus 106 ~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrin--kp~R 183 (277)
.+++++|++++|||+|.++++.+..+ +++... .++..+...++++++..++++++|++||++|+|+||+| ||+|
T Consensus 8 ~~~l~~~l~L~RP~~w~~nll~~~~~-~~a~~~---~~~~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~R 83 (295)
T PRK12324 8 KNLLAGYLKLLRPKQWIKNLFVFAAP-IFAGNL---LNPGALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNR 83 (295)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHH-HHHHhh---cccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Confidence 35688999999999999998865544 444221 11111234567777888899999999999999999996 7899
Q ss_pred cccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHH
Q 037091 184 PLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF 263 (277)
Q Consensus 184 PL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~ 263 (277)
|+|||++|+++|+.++.+++++|+++++++|+...++.+ +++++.++|| +++|++++++.+++++.+++-+..
T Consensus 84 PlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~~-~~~~~~~~Ys------~~lK~~~~~d~l~va~~~~lr~~~ 156 (295)
T PRK12324 84 PIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVLL-VYLVLNLAYS------FKLKHQPVLDVFCIASGFVLRAIA 156 (295)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh------HHhcCCchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988887777655 4788889998 469999999999998876654444
Q ss_pred H
Q 037091 264 P 264 (277)
Q Consensus 264 g 264 (277)
|
T Consensus 157 G 157 (295)
T PRK12324 157 G 157 (295)
T ss_pred H
Confidence 4
No 8
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.88 E-value=1.2e-21 Score=188.34 Aligned_cols=149 Identities=18% Similarity=0.208 Sum_probs=119.3
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHH---HHHHHHHHHHHHHHHHHHHHhhccccccccccCCC
Q 037091 105 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKL---IIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKP 181 (277)
Q Consensus 105 ~~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~---l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp 181 (277)
..++++.|++++||++|...++++++|.... +.+++.. ...++.++++..++++++|++|||+|+|+|++|+|
T Consensus 81 ~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~----g~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~ 156 (375)
T PLN00012 81 ETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS----GNFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEP 156 (375)
T ss_pred chHHHHHHHHHhCHHHHHHHHHHHHHHHHHc----CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCC
Confidence 3466889999999999999999988888843 2344321 11235667788899999999999999999999999
Q ss_pred CCcccCCccChHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHH
Q 037091 182 HLPLACGDFSMGEGLAITIASPLMAVAMGIML-------RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTII 254 (277)
Q Consensus 182 ~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l-------~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~ 254 (277)
+||+++|++|+++++.++.+++++++++++++ +++.++++++ +++++++||. | |+++||+++++++.++
T Consensus 157 ~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~-gi~l~~~YS~--p-Pl~lKr~~~~G~v~lG 232 (375)
T PLN00012 157 YRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALG-GSLLSYIYSA--P-PLKLKQNGWIGNYALG 232 (375)
T ss_pred CCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH-HHHHhhhhcC--C-chhhhHhccHhHHHHH
Confidence 99999999999999998888877777776654 3445556664 6777999997 7 9999999999998887
Q ss_pred HHHHHHH
Q 037091 255 SMNGLLL 261 (277)
Q Consensus 255 ~~~g~lv 261 (277)
+..+.+.
T Consensus 233 ~~~~~lp 239 (375)
T PLN00012 233 ASYISLP 239 (375)
T ss_pred HHHHHHH
Confidence 7776443
No 9
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.88 E-value=6.2e-22 Score=182.23 Aligned_cols=146 Identities=23% Similarity=0.296 Sum_probs=123.8
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCcccC
Q 037091 108 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLAC 187 (277)
Q Consensus 108 ~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~S 187 (277)
++++|++++||+++..++++.+.|++++.+. .++. ..+++++++++++++++|++||++|+|+|++|+|+||+++
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~---~~~~--~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGI---LSSP--SLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccc---cchH--HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 3688999999999999999999999988432 2221 1256788999999999999999999999999999999999
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 037091 188 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF 265 (277)
Q Consensus 188 G~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~ 265 (277)
|++|+++++.++.++.++|+++++.+|+....++++ +.+++++|| .|+||++.++++.++...|....+|.
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~-~~~~~~~Yt------~~lK~~~~~g~~~vg~~~g~~~~~g~ 148 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALF-NSLLLVLYA------ETLKGTPGLGNASVAYLTGSTFLFGG 148 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHH------HHHhcccchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888776 666788998 36999998999988887775544443
No 10
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.87 E-value=2.7e-21 Score=177.78 Aligned_cols=147 Identities=20% Similarity=0.351 Sum_probs=126.4
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCccc
Q 037091 107 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLA 186 (277)
Q Consensus 107 ~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~ 186 (277)
+++++|++++||+++.+..++.+.|.++|.+ .+++ ..+++++++++++++++|++||++|+|+|++|+|+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~---~~~~---~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALG---GLPL---DEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC---CCch---HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 3678999999999999999999999988853 2322 235677899999999999999999999999999999999
Q ss_pred CCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 037091 187 CGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF 266 (277)
Q Consensus 187 SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~ 266 (277)
+|++|+++++.++.++.++++++++.+|+....++++ +.++++.||. ++||+++++++.++..+|.....|..
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~Ys~------~lK~~~~~~~~~~~~~~~~~~~~g~~ 148 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVIL-VSVLGILYNW------KLKEYGLIGNLYVAFLTGMTFIFGGI 148 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH------hhccccchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999899888887775 6777899983 58999999999999988866555543
No 11
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.87 E-value=4.5e-21 Score=179.69 Aligned_cols=152 Identities=18% Similarity=0.279 Sum_probs=123.2
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHH---HHHHHHHHHHHHHHHHHHHHhhccccccccccCCC
Q 037091 105 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKL---IIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKP 181 (277)
Q Consensus 105 ~~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~---l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp 181 (277)
..++++.|++++||+++...+++++.|...+ +++++.. ...++.+++++.++++++|++|||+|+|.|+.|+|
T Consensus 12 ~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~----~~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~ 87 (306)
T TIGR02056 12 ETNIWKIRLQLMKPITWIPLIWGVVCGAAAS----GNFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEP 87 (306)
T ss_pred chhHHHHHHHHcChHhhHHHHHHHHHHHHHc----CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCC
Confidence 3456789999999999999999988888854 2344321 11234456778999999999999999999999999
Q ss_pred CCcccCCccChHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHH
Q 037091 182 HLPLACGDFSMGEGLAITIASPLMAVAMGIMLR-------SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTII 254 (277)
Q Consensus 182 ~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~-------~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~ 254 (277)
+||+++|++|++++..+++++.++++++++++. ++.+.++++ +++.+++||. | |+++||+++++++.++
T Consensus 88 ~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~-~~~~~~~Yt~--g-P~~lk~~g~~G~i~vg 163 (306)
T TIGR02056 88 YRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALF-GSFIAFIYSA--P-PLKLKQNGWLGNFALG 163 (306)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH-HHHHHHHHcC--C-hhhhhhcccHHHHHHH
Confidence 999999999999999999999999988877653 445566665 7778999997 7 9999999999999888
Q ss_pred HHHHHHHHHH
Q 037091 255 SMNGLLLLFP 264 (277)
Q Consensus 255 ~~~g~lv~~g 264 (277)
.+.+.....+
T Consensus 164 ~~~~~~~~~~ 173 (306)
T TIGR02056 164 ASYIALPWWA 173 (306)
T ss_pred HHHHHHHHHH
Confidence 8877554444
No 12
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.87 E-value=3.6e-21 Score=177.24 Aligned_cols=145 Identities=21% Similarity=0.312 Sum_probs=121.8
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCcccCC
Q 037091 109 CDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACG 188 (277)
Q Consensus 109 l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~SG 188 (277)
+++|++++||+++....++.+.|++++.+ ..+. +..+++++++.++.++++|++||++|+|+|++|+|+||+++|
T Consensus 3 l~~~~~l~Rp~~~~~~~~~~~~G~~la~~---~~~~--~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG 77 (277)
T PRK12883 3 LKAFIEITRPHNCILAGIVGILGSLVALG---GIPP--IKTLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG 77 (277)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcC---CCCc--HHHHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCC
Confidence 67899999999999999988889888743 2221 112456677888889999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 037091 189 DFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF 265 (277)
Q Consensus 189 ~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~ 265 (277)
++|++++..++.++.++|+++++.+|++.+.++++ +.+++++|+. ++|+++.+++..++...|.....|.
T Consensus 78 ~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~-~~~~~~~Y~~------~~k~~~~lg~~~vg~~~g~~~~~g~ 147 (277)
T PRK12883 78 AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALG-AYVLMFLYAW------KLKPLPFIGNVVVALLTGATPIYGA 147 (277)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh------cccCCcchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888776 6677999983 5889888899988888886554554
No 13
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.86 E-value=1.2e-20 Score=175.89 Aligned_cols=152 Identities=19% Similarity=0.224 Sum_probs=126.6
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCC---CCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC-
Q 037091 105 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQN---PADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK- 180 (277)
Q Consensus 105 ~~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~---~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink- 180 (277)
..+++++|++++||++.++++...+.|.++|... .+..++ ..+++++++++++++++|++|||+|+|+|++|+
T Consensus 4 ~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~---~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~R 80 (291)
T PRK12874 4 FTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGF---KLLILGILAAVSARNFAMAFNRLVDRDIDKDNPR 80 (291)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Confidence 4567899999999999999998888888887421 122343 235778899999999999999999999999996
Q ss_pred -CCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHH
Q 037091 181 -PHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL 259 (277)
Q Consensus 181 -p~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~ 259 (277)
|+||+|+|++|+++|..+..++.++++++++.+|+++..+++. .+++...|+. +||++.++.+.+++..|.
T Consensus 81 T~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~-~~~~~~~Y~~-------~KR~t~~~~~~~g~~~~~ 152 (291)
T PRK12874 81 TANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFP-FLIVLGGYSY-------FKRFSSLAHLVLGLSLGL 152 (291)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhh-------hcccccccHHHHHHHHHH
Confidence 7999999999999999999999998888888889988888764 6777889983 899999999999998887
Q ss_pred HHHHHHHH
Q 037091 260 LLLFPFFI 267 (277)
Q Consensus 260 lv~~g~~~ 267 (277)
....|...
T Consensus 153 ~~l~G~~a 160 (291)
T PRK12874 153 APIAGVVA 160 (291)
T ss_pred HHHHHHHH
Confidence 76666443
No 14
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.86 E-value=1.1e-20 Score=175.10 Aligned_cols=151 Identities=21% Similarity=0.238 Sum_probs=121.9
Q ss_pred HHHHHHHHhhhcchhH---HHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCC-
Q 037091 106 NKKCDAFYRLTRPYSC---VSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKP- 181 (277)
Q Consensus 106 ~~~l~~~l~l~RP~~~---~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp- 181 (277)
+++++.+.+++|++++ .....+...+..++. ..++. +...++++++++++++++|++||++|+|+||+|+|
T Consensus 7 ~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~---~~~~~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt 81 (289)
T COG0382 7 PNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAA---SGLPS--LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRT 81 (289)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---cCCch--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCc
Confidence 3445555555555554 444445555555553 12222 34577889999999999999999999999999987
Q ss_pred -CCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHH
Q 037091 182 -HLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL 260 (277)
Q Consensus 182 -~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~l 260 (277)
+||+|||++|+++|+.+.++++++++++++.+|++++++++. +.++.++|. ++||+++++.++++.+++..
T Consensus 82 ~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~-~~~l~~~Y~-------~~Kr~~~~~~~~lg~~~~~~ 153 (289)
T COG0382 82 KNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLA-ALVLALAYP-------FLKRFTFLPQLVLGLAFGLG 153 (289)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHH-------HhhcCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988777775 888899994 49999999999999999988
Q ss_pred HHHHHHHHH
Q 037091 261 LLFPFFIHF 269 (277)
Q Consensus 261 v~~g~~~~~ 269 (277)
+..|.....
T Consensus 154 ~~~g~~a~~ 162 (289)
T COG0382 154 ALAGAAAVG 162 (289)
T ss_pred HHHHHHHHh
Confidence 888876654
No 15
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.86 E-value=2.3e-20 Score=172.70 Aligned_cols=148 Identities=17% Similarity=0.203 Sum_probs=116.1
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCCccc
Q 037091 109 CDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHLPLA 186 (277)
Q Consensus 109 l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~RPL~ 186 (277)
+++|++++||++.....++.+.|.+++.+ ...++. .+++++++.+++++++|++|||+|+|+|++|+ |+||+|
T Consensus 2 ~~~~~~l~rp~~~~~~~~~~~~g~~la~~--~~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~ 76 (279)
T PRK12869 2 IKAYLKLLKPRVIWLLDLAAVAGYFLAAK--HGVSWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTP 76 (279)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhcc--CCCCHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcC
Confidence 57899999999999999999999988843 223432 35677889999999999999999999999986 799999
Q ss_pred CCccChHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 037091 187 CGDFSMGEGLAITIASPLMAVAMGIM-LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF 265 (277)
Q Consensus 187 SG~IS~r~A~~l~~~ll~lgliLa~~-l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~ 265 (277)
+|++|+++|..++.+++++|++++++ +|+.+.....++.+++.++|| .++||++.. +..++..-|.+.++|-
T Consensus 77 sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt------~~lKr~~~~-~~~v~~~~g~~~~l~g 149 (279)
T PRK12869 77 VGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYT------IWLKPRTWL-NIVIGGFAGNAAALAG 149 (279)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC------cccccCChH-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887 887765443444567788898 359999975 4444444444444444
Q ss_pred HHH
Q 037091 266 FIH 268 (277)
Q Consensus 266 ~~~ 268 (277)
|.+
T Consensus 150 ~~a 152 (279)
T PRK12869 150 YAS 152 (279)
T ss_pred HHH
Confidence 444
No 16
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.85 E-value=4.4e-20 Score=175.05 Aligned_cols=155 Identities=20% Similarity=0.296 Sum_probs=112.9
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCC
Q 037091 105 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNP-ADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHL 183 (277)
Q Consensus 105 ~~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~-~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~R 183 (277)
..+++|+|++++||++++ ..++.+.|.++|.+.. ..+... ...+...++...+..++++++|||+|+|+|++|+|+|
T Consensus 8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~-~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR 85 (331)
T PRK12392 8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDY-LLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR 85 (331)
T ss_pred hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHH-HHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence 445689999999999888 5556666766774311 111111 1011222333345567789999999999999999999
Q ss_pred cccCCccChHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHH
Q 037091 184 PLACGDFSMGEGLAITIASPLMAVAMGIMLRS-------PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM 256 (277)
Q Consensus 184 PL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~-------~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~ 256 (277)
|+++|++|+++++.+.+++.+++++++++++. +..++..+.+++++++||. | |+++||++++++..+++.
T Consensus 86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~-P~~lKr~~~~g~~~vGl~ 162 (331)
T PRK12392 86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--P-PLKLKKNILTSAPAVGFS 162 (331)
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--C-chhhhccchhHHHHHHHH
Confidence 99999999999999999999999888876542 2223322346778999997 7 999999998888888888
Q ss_pred HHHHHHHH
Q 037091 257 NGLLLLFP 264 (277)
Q Consensus 257 ~g~lv~~g 264 (277)
++.....+
T Consensus 163 ~~~~~~~~ 170 (331)
T PRK12392 163 YGFITFLS 170 (331)
T ss_pred HHHHHHHH
Confidence 87544433
No 17
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.85 E-value=2.8e-20 Score=174.30 Aligned_cols=149 Identities=16% Similarity=0.191 Sum_probs=123.6
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC--CCC
Q 037091 105 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPH 182 (277)
Q Consensus 105 ~~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrin--kp~ 182 (277)
..+++++|++++||++..+.+.+.+.|.++|.+. ..++. .+++.+++++++++++|++||++|+|+|++| +|+
T Consensus 11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~--~~~~~---~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~ 85 (300)
T PRK13106 11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKG--IPPIS---TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKN 85 (300)
T ss_pred hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCC
Confidence 4457999999999999999988888899888532 22332 3567889999999999999999999999998 579
Q ss_pred CcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHH
Q 037091 183 LPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL 262 (277)
Q Consensus 183 RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~ 262 (277)
||+|+|++|++||..+..++.+.+++++..+|+.+..++.+ ..++...|+. +||++.++++.++++.|..+.
T Consensus 86 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~-~~~~~~~Y~~-------~KR~t~~~~~~lg~~~~~~~~ 157 (300)
T PRK13106 86 RPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPI-VALIAMSYPY-------MKRYTAFANYHLASIQGLAVF 157 (300)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhH-------HhcCCcchHHHHHHHHHHHHH
Confidence 99999999999999998888888888888889988888775 5566778872 899999999999998876655
Q ss_pred HHHH
Q 037091 263 FPFF 266 (277)
Q Consensus 263 ~g~~ 266 (277)
.|..
T Consensus 158 ~G~~ 161 (300)
T PRK13106 158 SGAV 161 (300)
T ss_pred HHHH
Confidence 5553
No 18
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.85 E-value=4.2e-20 Score=173.46 Aligned_cols=151 Identities=14% Similarity=0.183 Sum_probs=122.0
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCC
Q 037091 106 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHL 183 (277)
Q Consensus 106 ~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~R 183 (277)
.+++++|++++||+++..+.++.+.|.+++.. +..++. .++++++++.++++++|++||++|+|+|+.|+ ++|
T Consensus 10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~--~~~~~~---~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~R 84 (306)
T PRK13362 10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASK--GHVDPV---LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNR 84 (306)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc--CCCCHH---HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCC
Confidence 34678999999999999999999999998842 234443 24567789999999999999999999999764 689
Q ss_pred cccCCccChHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHH
Q 037091 184 PLACGDFSMGEGLAITIASPLMAVAMGI-MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL 262 (277)
Q Consensus 184 PL~SG~IS~r~A~~l~~~ll~lgliLa~-~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~ 262 (277)
|+|+|++|+++|..+++++.++|+.++. +.|+....++.++.+++..+|| .++||++.++.+..++.+|+-..
T Consensus 85 PlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt------~~lKr~t~~~~~vgg~~ga~p~l 158 (306)
T PRK13362 85 VTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYS------LYLKRNSVYGTLVGSLSGAMPPV 158 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh------HHHhccCcHhHHHHHHHHHHHHH
Confidence 9999999999999999999999988654 5677766666554555678898 35999999988888887776666
Q ss_pred HHHHH
Q 037091 263 FPFFI 267 (277)
Q Consensus 263 ~g~~~ 267 (277)
.|...
T Consensus 159 ~G~~a 163 (306)
T PRK13362 159 VGYCA 163 (306)
T ss_pred HHHHH
Confidence 66544
No 19
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.85 E-value=2.5e-20 Score=172.15 Aligned_cols=145 Identities=19% Similarity=0.159 Sum_probs=122.5
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC--CCCCccc
Q 037091 109 CDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPHLPLA 186 (277)
Q Consensus 109 l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrin--kp~RPL~ 186 (277)
++.|++++||++..+.......|.++|... ..++. .+++++++++++++++|++||++|+|+|++| +|+||+|
T Consensus 2 ~~~~~~L~r~~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~ 76 (282)
T TIGR01475 2 FKDILELIKFEHTVFALPFAYAGALLAAKG--LPGLK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLV 76 (282)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCC
Confidence 678999999999999888878788887432 23432 3567889999999999999999999999998 6899999
Q ss_pred CCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 037091 187 CGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF 266 (277)
Q Consensus 187 SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~ 266 (277)
+|++|+++|..+..++.++++++++.+|.++..++.+ +.++++.|+. +||++.++.+.++...|..+..|+.
T Consensus 77 sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~Y~~-------~Kr~~~~~~~~~g~~~~~~~~~g~~ 148 (282)
T TIGR01475 77 SGLISKKEARTMIILSLALFLSASYFLNPLAFILSPL-VLLVLIIYPY-------TKRFTFLCHYVLGSTYGLAPLAGWV 148 (282)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhh-------HhccccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888888899888877775 5666888982 8999999999999988876666643
No 20
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.84 E-value=4.9e-20 Score=171.79 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=112.8
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCCc
Q 037091 107 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHLP 184 (277)
Q Consensus 107 ~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~RP 184 (277)
+++++|++++||+++....++.+.|.++|.+ ...++. .+++++++++++++++|++|||+|+|+|++|+ |+||
T Consensus 8 ~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~--~~~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rp 82 (296)
T PRK04375 8 ATLKDYLALTKPRVISLNLFTALGGMLLAPP--GVPPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRP 82 (296)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHhcC--CCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCC
Confidence 4688999999999999999999999998853 223432 35678899999999999999999999999986 7999
Q ss_pred ccCCccChHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHH
Q 037091 185 LACGDFSMGEGLAITIASPLMAVAMGIM-LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNG 258 (277)
Q Consensus 185 L~SG~IS~r~A~~l~~~ll~lgliLa~~-l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g 258 (277)
+|+|++|+++|..++.++.++|++++++ .|+.+..+++++.+.+..+|| .++||++ +++..++...|
T Consensus 83 l~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys------~~lKr~~-~~~~~v~~~~g 150 (296)
T PRK04375 83 LVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYT------LWLKRRT-PQNIVIGGAAG 150 (296)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc------cchhcCC-ccchHHHHHHH
Confidence 9999999999999999999999988754 577666666653344567897 2599998 45555554444
No 21
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.84 E-value=7.2e-20 Score=170.74 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=115.2
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCcc
Q 037091 106 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPL 185 (277)
Q Consensus 106 ~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL 185 (277)
...++.+++.+||.+|+.+..++.+|.+.+.+ .+++. ...++++++..+..+.+.|++|||+|+|+|++|+|+||+
T Consensus 9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~---~~~~~-~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i 84 (292)
T PRK13595 9 LLPLRRLLLISRPALWVNTVGTLVTGVWLTGH---LYTLD-PGVLPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGW 84 (292)
T ss_pred hhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC---cccch-hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCC
Confidence 34577899999999999999999999977632 34431 012456677788899999999999999999999999999
Q ss_pred cCCccChHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHH
Q 037091 186 ACGDFSMGEGLAITIASPLM----AVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTII 254 (277)
Q Consensus 186 ~SG~IS~r~A~~l~~~ll~l----gliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~ 254 (277)
++|++|++++..+..++.++ ++++++..+++...+.++ +.+++++||. | |+|+|++|+++++|..
T Consensus 85 ~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v-~~~l~~~YS~--p-PlRlK~rp~l~~l~~~ 153 (292)
T PRK13595 85 QGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLL-YAALFVGYSL--P-PLRFKARPFLDGLSNA 153 (292)
T ss_pred CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHcc--C-ccchhcCcchhHHHHH
Confidence 99999999999876655544 456677788877777665 7889999997 7 9999999999999874
No 22
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.84 E-value=3.5e-20 Score=172.61 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=120.1
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC--CCCCcc
Q 037091 108 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPHLPL 185 (277)
Q Consensus 108 ~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrin--kp~RPL 185 (277)
+++.|++++||++....+...+.|.++|.+. ..++. .+++.+++++++++++|++||++|+|+|++| +|+||+
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~--~~~~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGH--YIHPI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 4678999999999888888888898888532 12322 3456677889999999999999999999999 579999
Q ss_pred cCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 037091 186 ACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF 265 (277)
Q Consensus 186 ~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~ 265 (277)
|+|++|++||+.+.++++++++++++.+|+.++.++.+ ...+...|+ .+||++.+..+.++.+.|. -+++-
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~-~~~l~~~yp-------~~KR~t~~~~~~lG~~~g~-~~l~g 147 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPI-VIFLFIIDP-------FLKRYTAWRHIYMGSIIGL-GVLAG 147 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHH-------HHHhCccccHHHHHHHHHh-HHHHH
Confidence 99999999999999999999999999999998887775 555555454 3899999999888888884 44444
Q ss_pred HHHH
Q 037091 266 FIHF 269 (277)
Q Consensus 266 ~~~~ 269 (277)
|.++
T Consensus 148 ~~Av 151 (286)
T PRK12895 148 YLAV 151 (286)
T ss_pred HHHH
Confidence 4444
No 23
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.84 E-value=8.4e-20 Score=169.07 Aligned_cols=150 Identities=20% Similarity=0.214 Sum_probs=120.1
Q ss_pred HHHHHHHHHhhhcchhHHH---HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC-
Q 037091 105 LNKKCDAFYRLTRPYSCVS---IIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK- 180 (277)
Q Consensus 105 ~~~~l~~~l~l~RP~~~~~---~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink- 180 (277)
+++++++|++++||+++.+ ..++.+.|.++|... ...++ ..+++++++++++++++|++|||+|+|+|+.|+
T Consensus 3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~---~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R 78 (285)
T PRK12847 3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHS-LLPDI---SLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR 78 (285)
T ss_pred hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCc-cCCcH---HHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence 4567899999999998765 456777788887432 11333 235678889999999999999999999999764
Q ss_pred -CCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHH
Q 037091 181 -PHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL 259 (277)
Q Consensus 181 -p~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~ 259 (277)
++||+|+|++|++++..+..++.++++++++.+|+..+.++++ +.+.++.||. .||++.++.+.++...+.
T Consensus 79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~-~~~~~~~Y~~-------~Kr~~~~~~~~~g~~~~~ 150 (285)
T PRK12847 79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFI-AVILIVLYPL-------MKRFFYWPQLFLGFTFNM 150 (285)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhccc-------cccCCcccHHHHHHHHHH
Confidence 6899999999999999999999999999998899888888886 6677889983 788887888877777775
Q ss_pred HHHHHHH
Q 037091 260 LLLFPFF 266 (277)
Q Consensus 260 lv~~g~~ 266 (277)
-+..|+.
T Consensus 151 ~~l~~~~ 157 (285)
T PRK12847 151 GILMAFA 157 (285)
T ss_pred HHHHHHH
Confidence 4444433
No 24
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.84 E-value=8e-20 Score=168.69 Aligned_cols=148 Identities=20% Similarity=0.209 Sum_probs=114.0
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCCcccC
Q 037091 110 DAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHLPLAC 187 (277)
Q Consensus 110 ~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~RPL~S 187 (277)
|+|++++||+++....++.+.|.++|.+. ...++. .+++++++++++++++|++|||+|+|+|++|+ |+||+|+
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~-~~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGG-ALVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCC-CCCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 36899999999999999999999998532 123432 35678899999999999999999999999975 7999999
Q ss_pred CccChHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 037091 188 GDFSMGEGLAITIASPLMAVAM-GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF 266 (277)
Q Consensus 188 G~IS~r~A~~l~~~ll~lgliL-a~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~ 266 (277)
|++|++++..++.++.++|+.+ ++..|+....+++++.++++++||. + +||++.+..+. +...|.+.+++-|
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~--~----lKr~~~~~~~v-~~~~g~~~~l~g~ 149 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTI--W----LKRRTPQNTVI-GGFAGAVPPLIGW 149 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCh--h----hccCCchhHHH-HHHHHHHHHHHHH
Confidence 9999999999999999999884 4458888777777633345889984 3 89988764444 4444434444434
Q ss_pred HH
Q 037091 267 IH 268 (277)
Q Consensus 267 ~~ 268 (277)
.+
T Consensus 150 ~a 151 (280)
T TIGR01473 150 AA 151 (280)
T ss_pred HH
Confidence 33
No 25
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.83 E-value=9.8e-20 Score=169.72 Aligned_cols=149 Identities=17% Similarity=0.064 Sum_probs=120.4
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCC
Q 037091 106 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHL 183 (277)
Q Consensus 106 ~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~R 183 (277)
.+++++|++++||++......+.+.|.++|... ..++ ..+++..++.+++++++|++|||+|+|+|++|+ ++|
T Consensus 5 ~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~--~~~~---~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R 79 (291)
T PRK12886 5 LTKLKVFLEMIKFSHTLFALPFAGIGAVLAALG--LPGA---SQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGR 79 (291)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHhccC--CCCH---HHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC
Confidence 467889999999999999888888898888432 1222 235677889999999999999999999999997 689
Q ss_pred cccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHH
Q 037091 184 PLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF 263 (277)
Q Consensus 184 PL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~ 263 (277)
|+|+|++|+++|..+.+.+.+.++++++.+|+++..++++ ..++...|+. +||++.++.+..++.+|.....
T Consensus 80 PL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~-~~~~~~~Y~~-------~Kr~t~~~~~~~g~~~~~~~l~ 151 (291)
T PRK12886 80 AIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPP-ALFFLLLYSY-------CKRFTALAHVVLGFCLALAPLG 151 (291)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh-------hhccccccHHHHHHHHHHHHHH
Confidence 9999999999999987777777777777889988888775 5666889983 7999999988888887755444
Q ss_pred HHHHH
Q 037091 264 PFFIH 268 (277)
Q Consensus 264 g~~~~ 268 (277)
| |.+
T Consensus 152 g-~~a 155 (291)
T PRK12886 152 A-WIA 155 (291)
T ss_pred H-HHH
Confidence 4 444
No 26
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.83 E-value=1.2e-19 Score=169.27 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=126.2
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccCC---C
Q 037091 107 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNK---P 181 (277)
Q Consensus 107 ~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~e--iDrink---p 181 (277)
++++.+++.+||++...++.+++.|.++|....+++++. .+++++++++++++++|.+|||+|+| .|+.++ |
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~ 78 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL---LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR 78 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence 357899999999999999999999999885432456654 36788899999999999999999955 555422 7
Q ss_pred CCcccCCccChHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHH
Q 037091 182 HLPLACGDFSMGEGLAITIASPLMAVAMGIM----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN 257 (277)
Q Consensus 182 ~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~----l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~ 257 (277)
+||+++|++|++++..+..++.++++.++.. .+.+.+.++++ +++.++.||. | |+++|+++ +|++.++...
T Consensus 79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~-~~~~~~~Yt~--~-P~~lky~g-lGe~~v~~~~ 153 (296)
T PRK05951 79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALL-GVFLWTCYMG--P-PFFLKYRW-LGEHLVFYAW 153 (296)
T ss_pred CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHcC--C-CcccCCCC-chHHHHHHHH
Confidence 8999999999999999999887777655432 35455666654 8889999997 7 89999887 9999999999
Q ss_pred HHHHHHHHHHHH
Q 037091 258 GLLLLFPFFIHF 269 (277)
Q Consensus 258 g~lv~~g~~~~~ 269 (277)
|+++.+|.++..
T Consensus 154 g~~~vlg~~~~~ 165 (296)
T PRK05951 154 SHMLVMGLIYVW 165 (296)
T ss_pred HHHHHHHHHHHH
Confidence 998888887653
No 27
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.83 E-value=8.4e-20 Score=170.02 Aligned_cols=148 Identities=18% Similarity=0.115 Sum_probs=118.9
Q ss_pred HHHHHHHHhhhcchhHHHHH---HHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--
Q 037091 106 NKKCDAFYRLTRPYSCVSII---AALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK-- 180 (277)
Q Consensus 106 ~~~l~~~l~l~RP~~~~~~l---l~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink-- 180 (277)
++++++|++++||+++.++. ++.+.|.++|.+. ..++. .+++++++++++++++|++||++|+|+|+.|+
T Consensus 6 ~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~--~~~~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt 80 (290)
T PRK12870 6 EPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHG--LPPLP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVERT 80 (290)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcc
Confidence 45788999999999876665 5777788777432 23332 35677889999999999999999999998754
Q ss_pred CCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHH
Q 037091 181 PHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL 260 (277)
Q Consensus 181 p~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~l 260 (277)
++||+|+|++|++||..+..++.++++++++.+|+.++.+++. +.++.+.|+. .||++.++.+.++..+|..
T Consensus 81 ~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~-~~~~~~~Y~~-------~KR~t~~~~~~lg~~~~~~ 152 (290)
T PRK12870 81 RFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVA-AVPVIFLYPL-------AKRVFPVPQLVLAIAWGFA 152 (290)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhhh-------hhhccccceeeehHHHHhH
Confidence 4899999999999999999999999999999999988888876 6667889983 6777777777777777765
Q ss_pred HHHHHH
Q 037091 261 LLFPFF 266 (277)
Q Consensus 261 v~~g~~ 266 (277)
+..|+.
T Consensus 153 ~l~g~~ 158 (290)
T PRK12870 153 VLISWS 158 (290)
T ss_pred HHHHHH
Confidence 555543
No 28
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.82 E-value=2.6e-19 Score=165.79 Aligned_cols=148 Identities=20% Similarity=0.157 Sum_probs=116.7
Q ss_pred HHHHHHHhhhcchhHHHHH---HHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--C
Q 037091 107 KKCDAFYRLTRPYSCVSII---AALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--P 181 (277)
Q Consensus 107 ~~l~~~l~l~RP~~~~~~l---l~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p 181 (277)
+++++|++++|+|++..+. ++.+.|.++|... ..++. .+++++++.+++++++|++||++|+|+|+.|+ |
T Consensus 3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~--~~~~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~ 77 (282)
T PRK12848 3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADG--IPDLW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTK 77 (282)
T ss_pred hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCC
Confidence 4688999999977665444 4566677777432 22322 35667788899999999999999999999764 6
Q ss_pred CCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHH
Q 037091 182 HLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL 261 (277)
Q Consensus 182 ~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv 261 (277)
+||+|+|++|+++|..++.++.++++++++.+|+....++++ ++++.++|+. .||++.++.+.+++..|..+
T Consensus 78 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~-~~~~~~~Y~~-------~Kr~~~~~~~~~g~~~g~~~ 149 (282)
T PRK12848 78 NRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVA-ALALAWIYPF-------MKRYTHLPQVVLGAAFGWGI 149 (282)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHh-------HHhcCcccHHHHHHHHHHHH
Confidence 899999999999999999999999999998899888888775 6667888963 67877788887788888666
Q ss_pred HHHHHH
Q 037091 262 LFPFFI 267 (277)
Q Consensus 262 ~~g~~~ 267 (277)
..|+..
T Consensus 150 ~~g~~a 155 (282)
T PRK12848 150 PMAFAA 155 (282)
T ss_pred HHHHHH
Confidence 666544
No 29
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.82 E-value=4.2e-19 Score=164.49 Aligned_cols=149 Identities=18% Similarity=0.200 Sum_probs=120.9
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccc--cccc--cCCCCCc
Q 037091 109 CDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADV--HIDK--VNKPHLP 184 (277)
Q Consensus 109 l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~--eiDr--inkp~RP 184 (277)
++.|++++||+++..++++.+.|..+|... +.+++. .+++++++++++++++|.+|||+|+ ++|+ .++|+||
T Consensus 3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~ 78 (293)
T PRK06080 3 FKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRA 78 (293)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccc
Confidence 678999999999999999999999888432 345543 3677889999999999999999999 4785 4678999
Q ss_pred ccCCccChHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHH
Q 037091 185 LACGDFSMGEGLAITIASPLMAVAMGIM----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL 260 (277)
Q Consensus 185 L~SG~IS~r~A~~l~~~ll~lgliLa~~----l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~l 260 (277)
+++|++|++++..++.++.+++++++.. .+.+.++++++ +++.+++||. | |+++|+++ ++++.++...|.+
T Consensus 79 l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~-~~~~~~~Ys~--~-p~~~~~~g-lge~~~~~~~G~~ 153 (293)
T PRK06080 79 IGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLL-CIAAAILYTG--G-PKPYGYTG-LGELFVGVFFGLV 153 (293)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHhhhhcC--C-CCccCCCC-cHHHHHHHHHHHH
Confidence 9999999999999998888877666544 35555566654 7778899997 7 88999988 7999999988877
Q ss_pred HHHHHH
Q 037091 261 LLFPFF 266 (277)
Q Consensus 261 v~~g~~ 266 (277)
+..|.+
T Consensus 154 ~~~~~~ 159 (293)
T PRK06080 154 IVLGTY 159 (293)
T ss_pred HHHHHH
Confidence 766543
No 30
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.81 E-value=5.4e-19 Score=164.75 Aligned_cols=148 Identities=15% Similarity=0.081 Sum_probs=115.2
Q ss_pred HHHHHHHhhhcchhHHHHHHH---HHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--C
Q 037091 107 KKCDAFYRLTRPYSCVSIIAA---LLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--P 181 (277)
Q Consensus 107 ~~l~~~l~l~RP~~~~~~ll~---~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p 181 (277)
+++++|++++|.++..++.+. ...+.+++....+..++ ..+++..++++++++++|++||++|+|+|++|+ |
T Consensus 4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~---~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~ 80 (289)
T PLN02809 4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDL---KMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTK 80 (289)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcH---HHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCC
Confidence 568899999999887666553 33445554311011222 235677899999999999999999999999874 6
Q ss_pred CCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHH
Q 037091 182 HLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL 261 (277)
Q Consensus 182 ~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv 261 (277)
+||+|+|++|+++|+.+..++.++++++++.+|+..+.++++ +++++++|+. +||++.++.+..+..++.-+
T Consensus 81 ~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~Y~~-------~KR~t~~~~~~lg~~~~~~~ 152 (289)
T PLN02809 81 LRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGAS-SLLLVFTYPL-------MKRFTFWPQAFLGLTFNWGA 152 (289)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhH-------HHhcCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999889888888876 6777889973 99999898887777666544
Q ss_pred HHHH
Q 037091 262 LFPF 265 (277)
Q Consensus 262 ~~g~ 265 (277)
..|+
T Consensus 153 l~g~ 156 (289)
T PLN02809 153 LLGW 156 (289)
T ss_pred HHHH
Confidence 4443
No 31
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.80 E-value=1.1e-18 Score=162.29 Aligned_cols=148 Identities=15% Similarity=0.086 Sum_probs=115.4
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHHhcCC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCCcc
Q 037091 109 CDAFYRLTRPYSCVSIIAALLSVSLLPLQ-NPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHLPL 185 (277)
Q Consensus 109 l~~~l~l~RP~~~~~~ll~~l~g~llA~~-~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~RPL 185 (277)
++.+++++||++.+......+.+.+.+.. ..+.+++. .+++..++++++++++|++||++|+|+|++|+ |+||+
T Consensus 2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL 78 (284)
T PRK12888 2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL 78 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence 57899999998877765555555555521 01233432 35678899999999999999999999999997 79999
Q ss_pred cCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 037091 186 ACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF 265 (277)
Q Consensus 186 ~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~ 265 (277)
|+|++|+++|+.+..++++++++++..+|+.++.++.+ +++....|+. .||++.++.+.+++..+.-...|
T Consensus 79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~-~~~~~~~Y~~-------~Kr~t~~~~~~lg~~~~~~~l~g- 149 (284)
T PRK12888 79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPL-AVAPLVVYPY-------AKRFTNFPHAILGLAQAVGPVGA- 149 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH-------hhcccchhhHHHHHHHHHHHHHH-
Confidence 99999999999999998888888888889888877775 5666778973 78888888888777777544444
Q ss_pred HHH
Q 037091 266 FIH 268 (277)
Q Consensus 266 ~~~ 268 (277)
|.+
T Consensus 150 ~~a 152 (284)
T PRK12888 150 WIA 152 (284)
T ss_pred HHH
Confidence 444
No 32
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.80 E-value=8.7e-19 Score=165.04 Aligned_cols=150 Identities=17% Similarity=0.143 Sum_probs=118.4
Q ss_pred HHHHHHHHHhhh---cchhHHHHHHHHHHHHHhcCCCCC---CCChHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 037091 105 LNKKCDAFYRLT---RPYSCVSIIAALLSVSLLPLQNPA---DFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKV 178 (277)
Q Consensus 105 ~~~~l~~~l~l~---RP~~~~~~ll~~l~g~llA~~~~~---~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDri 178 (277)
.+.++++|++++ ||+.....+++.+.|.++|..... ..++. .+++++++++++++++|++|||+|+|+|+.
T Consensus 26 ~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~ 102 (314)
T PRK12878 26 LPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDIDAK 102 (314)
T ss_pred cchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 456789999999 888889999999999999854211 33332 356788999999999999999999999987
Q ss_pred CC--CCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHH
Q 037091 179 NK--PHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM 256 (277)
Q Consensus 179 nk--p~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~ 256 (277)
|+ ++||+|+|++|++++..+..++.++|+++.+..|++.+.++++ ++++++.|+. .||+..++....+.+
T Consensus 103 ~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~-~~~~~~~Y~~-------~KR~t~~~~~~~Gl~ 174 (314)
T PRK12878 103 VARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIA-SLAIVAAYPF-------MKRITWWPQFFLGLA 174 (314)
T ss_pred CCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH-------HHhcCCcchHHHHHH
Confidence 65 6899999999999999999999999999988888888888876 6777889983 677665554444444
Q ss_pred HHHHHHHHH
Q 037091 257 NGLLLLFPF 265 (277)
Q Consensus 257 ~g~lv~~g~ 265 (277)
.+.....|+
T Consensus 175 ~~~~~l~g~ 183 (314)
T PRK12878 175 FSWGALMGW 183 (314)
T ss_pred HHHHHHHHH
Confidence 443333443
No 33
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.80 E-value=1.6e-18 Score=162.45 Aligned_cols=154 Identities=13% Similarity=0.070 Sum_probs=117.1
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHhcCC---CCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--
Q 037091 107 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQ---NPAD-FTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK-- 180 (277)
Q Consensus 107 ~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~---~~~~-~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink-- 180 (277)
++++.|.+++|-++.+..+--..+|.++|.. ...+ +++..+..+++..++++++++++|++||++|+|+|++|+
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT 81 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRT 81 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCC
Confidence 3578899999995444443334557777731 1122 111113356788999999999999999999999999997
Q ss_pred CCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHH
Q 037091 181 PHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL 260 (277)
Q Consensus 181 p~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~l 260 (277)
++||+|+|++|+++|+.+.+.+.+++++++..+|+.+..++.+ ++++..+|+. +||++.++.+..+.+.+.
T Consensus 82 ~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~-~~~~~~iY~~-------~KR~t~~~~~vLGl~~~~- 152 (300)
T PRK12876 82 SSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVL-STLLMIIYPY-------TKRVTFLCHWILGLVYYL- 152 (300)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHh-------HhcCCchhHHHHHHHHHH-
Confidence 6999999999999999999888888888888999999888886 6666788973 999999998877777775
Q ss_pred HHHHHHHHH
Q 037091 261 LLFPFFIHF 269 (277)
Q Consensus 261 v~~g~~~~~ 269 (277)
-+++.|.++
T Consensus 153 ~~l~~~~Av 161 (300)
T PRK12876 153 AILMNFFAI 161 (300)
T ss_pred HHHHHHHHH
Confidence 334444443
No 34
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.79 E-value=4.1e-18 Score=157.84 Aligned_cols=143 Identities=19% Similarity=0.200 Sum_probs=112.5
Q ss_pred HHhhhcchhHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCCcccCC
Q 037091 112 FYRLTRPYSCVSIIAALLSVSLLPLQNPADF-TPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHLPLACG 188 (277)
Q Consensus 112 ~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~-~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~RPL~SG 188 (277)
++|+.||..+....++.+.|.++|... ++. ++ ..+++.+++++++++++|++|||+|+|+|+.|+ |+||+|+|
T Consensus 7 l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~---~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG 82 (281)
T TIGR01474 7 LMRADKPIGTLLLLWPCLWSLLLAAQA-GGIPPL---YLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASG 82 (281)
T ss_pred HHccccHHHHHHHHHHHHHHHHHHhcc-cCCCcH---HHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCC
Confidence 444455555566667777788887431 122 22 124667788899999999999999999999764 68999999
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 037091 189 DFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF 266 (277)
Q Consensus 189 ~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~ 266 (277)
++|+++|..+..++.++|+++++.+|+....++++ ++++.+.|+. .||++.++.+..+...|..+..|++
T Consensus 83 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~-~~~~~~~Y~~-------~Kr~~~~~~~~~g~~~~~~~~~g~~ 152 (281)
T TIGR01474 83 AVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVA-SLALVATYPF-------MKRITYWPQLVLGLAFGWGALMGWA 152 (281)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHhch-------hcccccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999899988888886 6777999983 8998888888888777766666643
No 35
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.78 E-value=2.4e-18 Score=160.89 Aligned_cols=143 Identities=17% Similarity=0.110 Sum_probs=108.9
Q ss_pred HHHHHHHHhhhcchhHHHHHH---HHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--
Q 037091 106 NKKCDAFYRLTRPYSCVSIIA---ALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK-- 180 (277)
Q Consensus 106 ~~~l~~~l~l~RP~~~~~~ll---~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink-- 180 (277)
++++++|++++||+++.++.+ +.+.|.+++.. ...++ ...+++++++.++++++|++||+.|+|+|+.|+
T Consensus 4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~--~~~~~---~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT 78 (294)
T PRK12873 4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPS--APPSL---LLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERT 78 (294)
T ss_pred hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccC--CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcC
Confidence 346889999988887765554 55556666532 11222 235678899999999999999999999999875
Q ss_pred CCCcccCCccChHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHH
Q 037091 181 PHLPLACGDFSMGEGLAITIASPLMAVAMGIML----RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM 256 (277)
Q Consensus 181 p~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l----~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~ 256 (277)
++||+|+|++|+++|+.+.+++.++++++++.+ |+.+..++.+ ++++...|+. .||+..+..+..++.
T Consensus 79 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~-~~~~~~~Y~~-------~KR~t~~~~~vlg~~ 150 (294)
T PRK12873 79 KNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFL-ALPPILIYPS-------AKRWFAYPQAILALC 150 (294)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH-HHHHHHHHHH-------HHhccccchHHHHHH
Confidence 699999999999999999999999999887655 6677777775 6667889982 788776666655555
Q ss_pred HHHHH
Q 037091 257 NGLLL 261 (277)
Q Consensus 257 ~g~lv 261 (277)
.|.-.
T Consensus 151 ~a~~~ 155 (294)
T PRK12873 151 WGFAV 155 (294)
T ss_pred HHhHH
Confidence 55333
No 36
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.78 E-value=4.7e-18 Score=160.31 Aligned_cols=151 Identities=15% Similarity=0.102 Sum_probs=124.5
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC----CCCCc
Q 037091 109 CDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN----KPHLP 184 (277)
Q Consensus 109 l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrin----kp~RP 184 (277)
++.|++++||++....+++++.|..+|....+.+++. .+++++++++++++++|.+|||+|.+.|.-+ ++.|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 5789999999999999999999999885322456653 3677888999999999999999998865443 37899
Q ss_pred ccCCccChHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHH
Q 037091 185 LACGDFSMGEGLAITIASPLMAVA----MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL 260 (277)
Q Consensus 185 L~SG~IS~r~A~~l~~~ll~lgli----La~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~l 260 (277)
+++|.+|++++...+..+++++++ +.+..+...+.++++ +++.++.||. | |+++|++| +|++.++...|++
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~-g~~~~~~Yt~--g-P~~l~y~g-LGe~~v~i~~G~~ 154 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLI-CFAIGILYTG--G-PLPLSRMP-LGEIFSGLTMGFG 154 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHH-HHHHhhhhcC--C-CcccccCc-cHHHHHHHHHHHH
Confidence 999999999999999988888776 444556666667765 8888999997 7 99999999 9999999999977
Q ss_pred HHHHHHH
Q 037091 261 LLFPFFI 267 (277)
Q Consensus 261 v~~g~~~ 267 (277)
+.+|.++
T Consensus 155 ~v~g~~y 161 (317)
T PRK13387 155 IFLLAVY 161 (317)
T ss_pred HHHHHHH
Confidence 7766543
No 37
>PLN02776 prenyltransferase
Probab=99.75 E-value=3.6e-17 Score=155.60 Aligned_cols=142 Identities=15% Similarity=0.042 Sum_probs=113.5
Q ss_pred hhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCCcccCCccCh
Q 037091 115 LTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHLPLACGDFSM 192 (277)
Q Consensus 115 l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~RPL~SG~IS~ 192 (277)
++||+....++++.+.|+++|.+. ..++ ..++++.+++.++.+++|++||++|+|+|+.|+ ++||+|+|++|+
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~--~~~~---~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGE--AIDL---PGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCC--CCCH---HHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 478999999999999999998532 2233 235677899999999999999999999999976 699999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037091 193 GEGLAITIASPLMAVAM-GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHF 269 (277)
Q Consensus 193 r~A~~l~~~ll~lgliL-a~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~~~~ 269 (277)
++|..+++++.++|+.+ ++++|+.+.++++++.+++...||. +||++.+. ..++.+.|-+-+++-|.++
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~-------lKR~t~~~-~~lG~~~Ga~ppL~Gw~Av 145 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP-------LKQIHPAN-TWVGAVVGAIPPLMGWAAA 145 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-------HccCCchh-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999854 5678988888877645555778982 99999664 5777777754555555544
No 38
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2e-17 Score=154.32 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=115.6
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CC
Q 037091 105 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PH 182 (277)
Q Consensus 105 ~~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~ 182 (277)
..+++++|++++||+.+...+++.+.|+++|.. +..++. .++.+.++..++.++++++|+++|+|+|++|+ ++
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~---l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPL---LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 346789999999999999999999999999964 234443 36788999999999999999999999999986 58
Q ss_pred CcccCCccChHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhh
Q 037091 183 LPLACGDFSMGEGLAITIASPLMAVAMG-IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL 247 (277)
Q Consensus 183 RPL~SG~IS~r~A~~l~~~ll~lgliLa-~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~l 247 (277)
||+++|+++|++++.++.++.++|+.+. +..|+.+.++++.+.++++.+||. .+||+..
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~------~lKR~T~ 148 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL------WLKRRTP 148 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hccCCcc
Confidence 9999999999999999999999999887 788999988888888999999995 4777663
No 39
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.70 E-value=1.1e-16 Score=143.08 Aligned_cols=134 Identities=23% Similarity=0.339 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--CCCCCcccCCccChHHHHHHHHH
Q 037091 124 IIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKV--NKPHLPLACGDFSMGEGLAITIA 201 (277)
Q Consensus 124 ~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDri--nkp~RPL~SG~IS~r~A~~l~~~ 201 (277)
.+.+++.+..++.. ...++. .+..+.+++++++.+++.+||+.|+|+|+. |||+||+++|++|.+++..++.+
T Consensus 4 ~~~~~l~~~~~~~~--~~~~~~---~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~ 78 (257)
T PF01040_consen 4 SFLPVLAGLALASG--GPFNWP---IFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI 78 (257)
T ss_pred HHHHHHHHHHHHHc--CCCCHH---HHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence 34455555443322 233432 355667777799999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 037091 202 SPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI 267 (277)
Q Consensus 202 ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~~ 267 (277)
+.++++++++..++..+.+.++ +.+.+++|| | |.|+|++++++++.++.+++.....|.+.
T Consensus 79 ~~~l~l~l~~~~~~~~~~~~~~-~~~~~~~Ys---~-~~~lk~~~~~~~~~~~~~~~~~~~~~~~~ 139 (257)
T PF01040_consen 79 LLLLGLLLALLLGPWFLLILLL-GFLLGLLYS---P-PLRLKRRPLWGELVVALVFGLLILLGAYA 139 (257)
T ss_pred HHHHHHHHHHhcCchhHHHHHH-HHHHHHHHh---h-hhhhcceeccchhhHHHhhhHhhhhhhhh
Confidence 9999999998888888888776 677779999 5 89999999999999999999888877776
No 40
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.68 E-value=1.1e-15 Score=142.39 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=116.3
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccC--CCCCcccCCccCh
Q 037091 117 RPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVN--KPHLPLACGDFSM 192 (277)
Q Consensus 117 RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~e--iDrin--kp~RPL~SG~IS~ 192 (277)
||+++...+.+++.|..+|... +.+++. .+++++++++++++++|.+|||+|.+ .|+.+ +|.|++++|.+|+
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~-~~f~~~---~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWL-HAFVWL---VALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 8999999999999999998543 356654 36788899999999999999999985 46543 5899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hhH------HHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHH
Q 037091 193 GEGLAITIASPLMAVAMGIM----LRS------PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL 262 (277)
Q Consensus 193 r~A~~l~~~ll~lgliLa~~----l~~------~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~ 262 (277)
+++..++.++++++++++.+ .++ +.+.++++ +++.+++||. | |+++|+++ +|++.++...|++..
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~-~~~~~~~Yt~--g-P~~l~y~g-LGE~~v~i~~G~l~v 151 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGAL-CIAAAITYTV--G-SKPYGYAG-LGDISVLVFFGPLAV 151 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHH-HHHHhHhhcC--C-CCccccCc-hHHHHHHHHHHHHHH
Confidence 99999998888877655543 332 23455554 7888999997 7 99999999 999999999998888
Q ss_pred HHHHH
Q 037091 263 FPFFI 267 (277)
Q Consensus 263 ~g~~~ 267 (277)
+|.|+
T Consensus 152 ~g~~y 156 (284)
T TIGR00751 152 LGTQY 156 (284)
T ss_pred HHHHH
Confidence 88765
No 41
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.67 E-value=1.8e-15 Score=141.68 Aligned_cols=123 Identities=18% Similarity=0.177 Sum_probs=88.8
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC-------
Q 037091 107 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN------- 179 (277)
Q Consensus 107 ~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrin------- 179 (277)
++++.|++++||++++....+++.|.++|....+.+++. .+++.++++.++..++|++|||+|+|.|+.|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~---~~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWE---LTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHH---HHHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence 357899999999988887777777877773111234442 1233344444445667899999999999875
Q ss_pred --C--CCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHhhhcC
Q 037091 180 --K--PHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRS----PPLVIGFIIWCIVGGAYS 233 (277)
Q Consensus 180 --k--p~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~----~~lll~ll~~~ll~~~YS 233 (277)
| ++||+++|++|++++..+.+++.++|++++..++. ..+.+++ .+.++++.|+
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~-~~~~~~~~Y~ 140 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIML-YSYGIEAFYQ 140 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 3 48999999999999999999999999888776544 2333333 3566777787
No 42
>PLN02922 prenyltransferase
Probab=99.67 E-value=2.2e-15 Score=142.22 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=118.4
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccCC--CC
Q 037091 107 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNK--PH 182 (277)
Q Consensus 107 ~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~e--iDrink--p~ 182 (277)
++++.|++.+||++...++++++.|.++|....+.+++. .++++++++++++++.|.+|||+|.+ .|+.++ |.
T Consensus 13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~ 89 (315)
T PLN02922 13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDAR---RYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV 89 (315)
T ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence 457889999999999999999999999885433467764 36788999999999999999999987 687543 23
Q ss_pred CcccCCccChHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHH
Q 037091 183 LPLACGDFSMGEGLAITIASPLMAVAMGIM-----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN 257 (277)
Q Consensus 183 RPL~SG~IS~r~A~~l~~~ll~lgliLa~~-----l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~ 257 (277)
|+ .| |+++....+.++++++++..+. .+.+.++++++ +++.+++||. | |+++|+++ +|++.++...
T Consensus 90 ~~--~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~-g~~~~~~Yt~--g-P~pl~y~g-LGE~~v~i~f 160 (315)
T PLN02922 90 NL--VG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAA-AILCGYVYQC--P-PFRLSYKG-LGEPLCFAAF 160 (315)
T ss_pred Cc--cc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHH-HHHHHHHHhc--C-CcccccCc-chHHHHHHHH
Confidence 44 33 9999988888887777633222 13445555554 8889999997 7 99999999 8999999999
Q ss_pred HHHHHHHHHHH
Q 037091 258 GLLLLFPFFIH 268 (277)
Q Consensus 258 g~lv~~g~~~~ 268 (277)
|+++..|.|+.
T Consensus 161 G~l~v~g~y~~ 171 (315)
T PLN02922 161 GPLATTAFYLA 171 (315)
T ss_pred HHHHHHHHHHH
Confidence 98888886654
No 43
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.66 E-value=2.5e-15 Score=141.25 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=122.2
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccCCCCC
Q 037091 106 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNKPHL 183 (277)
Q Consensus 106 ~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~e--iDrinkp~R 183 (277)
+++++.|++.+||+++..++++++.|.++|....+++++. .++++++++++++++.+.+|||+|.+ .|+. ++.
T Consensus 9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~- 83 (304)
T PRK07419 9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD---QFITFLLAAILILAWENLSNDVFDADTGIDKN-KFH- 83 (304)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-
Confidence 4567889999999999999999999999985432457764 36788999999999999999999988 7874 222
Q ss_pred cccCCccChHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHH
Q 037091 184 PLACGDFSMGEGLAITIASPLMAVAMGI----MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL 259 (277)
Q Consensus 184 PL~SG~IS~r~A~~l~~~ll~lgliLa~----~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~ 259 (277)
...++..++++...++.++++++++++. ..+++.+.++++ +++.+++||. | |+++|+++ +|++.++...|+
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~-g~~~~~~YT~--g-P~~l~y~g-LGE~~v~l~~G~ 158 (304)
T PRK07419 84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLL-CCFLGYLYQG--P-PFRLGYQG-LGEPLCFLAFGP 158 (304)
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH-HHHHhheccC--C-CcccCCCC-chHHHHHHHHHH
Confidence 3445666899999888888877765543 345555556665 7889999997 7 99999999 799999999999
Q ss_pred HHHHHHHHH
Q 037091 260 LLLFPFFIH 268 (277)
Q Consensus 260 lv~~g~~~~ 268 (277)
++..|.|+-
T Consensus 159 l~v~g~~yv 167 (304)
T PRK07419 159 LAVAAALYS 167 (304)
T ss_pred HHHHHHHHH
Confidence 988887764
No 44
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.66 E-value=5.2e-16 Score=144.97 Aligned_cols=102 Identities=12% Similarity=0.138 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 037091 148 IEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCI 227 (277)
Q Consensus 148 ~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~l 227 (277)
.+.+++.+.+++..++++++||++|+|+|++|+|+||+|||++|+++|..++.++.++++.++... ...+. .++
T Consensus 46 ~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i~-~~~ 119 (299)
T PRK13592 46 IQEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNVG-WFL 119 (299)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-HHH
Confidence 356777788888899999999999999999999999999999999999999999977777776544 11121 233
Q ss_pred Hhhhc-----CCCccCcccccchhhHHHHHHHHHHHHHH
Q 037091 228 VGGAY-----SIDLPPLLRWKGNPLMAAVTIISMNGLLL 261 (277)
Q Consensus 228 l~~~Y-----S~~lp~P~rlKr~~ll~~l~i~~~~g~lv 261 (277)
..+.| + .++|+.++.+++.++...|..+
T Consensus 120 i~~lY~~lm~a------~~~K~~~l~gNl~Va~ltg~~f 152 (299)
T PRK13592 120 FLYIYGTLMSF------WFFKRDKIQNSLPLALVTHNPV 152 (299)
T ss_pred HHHHHHHHHHH------HHHcccCCCcchhhhhhccchh
Confidence 34445 5 3699999999999998888444
No 45
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.60 E-value=2.7e-14 Score=132.91 Aligned_cols=135 Identities=17% Similarity=0.282 Sum_probs=86.5
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHHHH--HHHHHHHHHhhccccccccccCCCC
Q 037091 106 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPAD-FTPKLIIEAFKCMVPA--IMMNNYANAINQLADVHIDKVNKPH 182 (277)
Q Consensus 106 ~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~-~~~~~l~~~ll~lla~--ll~~~a~~viND~~D~eiDrinkp~ 182 (277)
.++++.++++.||+++..++.+++.|..+|.....+ +++. ++++++. +..|...|++||++|+|+|+.|+++
T Consensus 5 ~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~-----~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk 79 (282)
T PRK12875 5 GDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPA-----AVALFAYFLFPANVFLYGVNDVFDADTDELNPKK 79 (282)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHH-----HHHHHHHHHHHHHHHHhcchhhhhhhccccCCCc
Confidence 457888999999999999999999999998643211 3332 2222222 3455677889999999999999765
Q ss_pred Cc---ccCCccChHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHH
Q 037091 183 LP---LACGDFSMGEGLAI-TIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVT 252 (277)
Q Consensus 183 RP---L~SG~IS~r~A~~l-~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~ 252 (277)
+. ++ .+.+.+... .....++++.+.+..++....+. +++++++++||. | |+|+|++|+.+..+
T Consensus 80 ~~~r~~~---~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~l-l~~i~~~~~YS~--p-P~rlk~~p~~~~~~ 146 (282)
T PRK12875 80 DREREVR---YRGDRRVLVAVALSGALALAFLLVLPPAAWPAL-LAFLVLSVEYSA--P-PLRFKTTPVLDSLS 146 (282)
T ss_pred cCCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHcC--C-CccchhccHHHHHH
Confidence 43 33 111222211 11122334444434444333333 357888999997 7 99999999876543
No 46
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.58 E-value=5.6e-14 Score=130.89 Aligned_cols=143 Identities=18% Similarity=0.073 Sum_probs=97.5
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH-HHHHHHHHHHhhccccccccccCCCCCcccCC
Q 037091 110 DAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVP-AIMMNNYANAINQLADVHIDKVNKPHLPLACG 188 (277)
Q Consensus 110 ~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla-~ll~~~a~~viND~~D~eiDrinkp~RPL~SG 188 (277)
|.++++.||++|+.+.+++..|+++|.+ ..++ .++++.++ ....+.+.+++|||+|+|.|+.|++.+.. .|
T Consensus 2 ~~~~~~~rP~~wi~~a~pf~~g~~la~~---~~~~----~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g 73 (282)
T PRK13105 2 RQLLLSSRPISWINTAYPFAAAYLLAGG---EIDW----LFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG 73 (282)
T ss_pred hhHHHhcccHHHhccHHHHHHHHHHHCC---CCCh----HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence 5789999999999999999999998832 2223 23344444 33444444688999999999999765443 48
Q ss_pred ccChHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHH
Q 037091 189 DFSMGEGLAITIASPLM-----AVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF 263 (277)
Q Consensus 189 ~IS~r~A~~l~~~ll~l-----gliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~ 263 (277)
.+|+++....+..+.++ ++.+....+++.+.++.+ +++.++.||. | |.|+|++|+.+.++.++.......+
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~-ai~~~~~YS~--~-p~rlk~~gl~d~~t~~~~f~~~~v~ 149 (282)
T PRK13105 74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAV-SVFAVVAYSA--P-GLRFKERPFLDSLTSSTHFVSPALY 149 (282)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHhcC--C-CccccccchHHHHHHHHHHHHHHHH
Confidence 89999984443333333 333333336666666664 8889999997 7 8899999998886555544332333
Q ss_pred H
Q 037091 264 P 264 (277)
Q Consensus 264 g 264 (277)
|
T Consensus 150 G 150 (282)
T PRK13105 150 G 150 (282)
T ss_pred H
Confidence 3
No 47
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.57 E-value=4.2e-14 Score=131.78 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=112.5
Q ss_pred HHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccCCCCCcccCCc
Q 037091 112 FYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNKPHLPLACGD 189 (277)
Q Consensus 112 ~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~e--iDrinkp~RPL~SG~ 189 (277)
|++.+||++...++++++.|..+|....+.+++. .+++++++++++++++|.+|||+|.+ .|+.+. ....++.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~---~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~ 76 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLD---RFALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLT 76 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCccccc
Confidence 5788999999999999999999985433457764 36778899999999999999999987 487532 1222334
Q ss_pred cChHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 037091 190 FSMGEGLAITIASPLMAVAMG----IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF 265 (277)
Q Consensus 190 IS~r~A~~l~~~ll~lgliLa----~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~ 265 (277)
.|+++......++.+++++++ +..+.+.+.++++ +++.++.||. | |+++|+++ +|++.++...|.++..|.
T Consensus 77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~-g~~~~~~Yt~--g-P~~l~y~g-LGE~~v~l~~G~l~v~g~ 151 (285)
T TIGR02235 77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGL-CCFLGYLYQG--P-PFRLGYQG-LGEPICWLCFGPLAIAAA 151 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHhhcC--C-CcccCCCC-ccHHHHHHHHHHHHHHHH
Confidence 567888877777777665544 3344444555554 8889999997 7 99999999 799999999998888776
Q ss_pred HHH
Q 037091 266 FIH 268 (277)
Q Consensus 266 ~~~ 268 (277)
|+-
T Consensus 152 ~yv 154 (285)
T TIGR02235 152 LYA 154 (285)
T ss_pred HHH
Confidence 553
No 48
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.57 E-value=6e-14 Score=131.22 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=120.2
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccc----cCCC
Q 037091 108 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDK----VNKP 181 (277)
Q Consensus 108 ~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~e--iDr----inkp 181 (277)
+.+.|++.+|||++...++++++|..+|......+++ ..++++++++.+++++.+..|||+|.+ .|. ..+.
T Consensus 7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~---~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~ 83 (303)
T COG1575 7 KTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL---LVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQ 83 (303)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccc
Confidence 3578999999999999999999999998543123444 457899999999999999999999987 574 3345
Q ss_pred CCcccCCccChHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHH
Q 037091 182 HLPLACGDFSMGEGLAITIASPLMAVAMGI----MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN 257 (277)
Q Consensus 182 ~RPL~SG~IS~r~A~~l~~~ll~lgliLa~----~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~ 257 (277)
++-+...+++++..+.+.+.+...+++++. ..+.+.+.++++ +++.++.|++ + |+++.+.| +|++.++...
T Consensus 84 ~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l-~~~~g~~YTg--G-p~PlgY~g-LGEi~~~vff 158 (303)
T COG1575 84 SGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLL-CIAAGILYTG--G-PFPLGYMG-LGEIFVGVFF 158 (303)
T ss_pred cceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHheeeecc--C-CcCcccCC-HHHHHHHHHH
Confidence 677777788888888777777666554443 344555666665 8999999997 7 99999999 9999999999
Q ss_pred HHHHHHHH-HHHHH
Q 037091 258 GLLLLFPF-FIHFQ 270 (277)
Q Consensus 258 g~lv~~g~-~~~~~ 270 (277)
|++..+|. |.+-|
T Consensus 159 G~l~v~g~~yiqt~ 172 (303)
T COG1575 159 GPLIVLGAYYIQTG 172 (303)
T ss_pred HHHHHHHHHHHhcc
Confidence 97777554 44433
No 49
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.57 E-value=3.3e-14 Score=130.96 Aligned_cols=150 Identities=19% Similarity=0.117 Sum_probs=103.4
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCcccC
Q 037091 108 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLAC 187 (277)
Q Consensus 108 ~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~S 187 (277)
-++++++++|..+.+..+.++..+..... ..++. .....++++++.+.++|++||++|+|+|++|+|+||.++
T Consensus 3 ~~~~~~~~~~~~~~~~a~~~~~l~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~s 75 (285)
T PRK12872 3 LLFAFLKLFRYGNLLIAALGQSLVYMASL----LLGLP---ISWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVFS 75 (285)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHH----HHcCh---hHHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHHH
Confidence 36789999999888776665544322110 01111 134667788999999999999999999999999999985
Q ss_pred CccChHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHhhhcCCCccCcc-cccchhhHHHHHHHHHHHHHHHHHH
Q 037091 188 GDFSMGEGLAITIASPLMAVAMG-IMLRSPPLVIGFIIWCIVGGAYSIDLPPLL-RWKGNPLMAAVTIISMNGLLLLFPF 265 (277)
Q Consensus 188 G~IS~r~A~~l~~~ll~lgliLa-~~l~~~~lll~ll~~~ll~~~YS~~lp~P~-rlKr~~ll~~l~i~~~~g~lv~~g~ 265 (277)
++.....+..+..+...+++.+. ...+++.++++++ +.++++.||. | |. ++|+.|.++++.++.++|....++.
T Consensus 76 ~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~Ys~--~-~~~~lk~~p~~~~~~vg~~~g~~~~~~~ 151 (285)
T PRK12872 76 ETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFII-PLILGILYSV--F-FKRRLKRIPLFKNLVVSLLWALSPLILG 151 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHhC--h-hHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence 44433333333333333343332 2346777777765 6777999996 4 44 6999999999999999997777655
Q ss_pred HHH
Q 037091 266 FIH 268 (277)
Q Consensus 266 ~~~ 268 (277)
+++
T Consensus 152 ~~~ 154 (285)
T PRK12872 152 VYY 154 (285)
T ss_pred HHh
Confidence 444
No 50
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.51 E-value=3.7e-15 Score=137.03 Aligned_cols=152 Identities=18% Similarity=0.135 Sum_probs=115.1
Q ss_pred hHhHHHHHHHHHHHhhhcchhHHHHHHHHHH---HHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 037091 100 SFMQVLNKKCDAFYRLTRPYSCVSIIAALLS---VSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHID 176 (277)
Q Consensus 100 ~~~~~~~~~l~~~l~l~RP~~~~~~ll~~l~---g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiD 176 (277)
++....+.+++.|.+++|.+..+++.+.... ..++|.. .+.+ +. +..+-+.-++.+++++++|.+||+.|+|+|
T Consensus 55 s~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAd-ag~~-p~-~~mL~LFG~GAllMRgAGCtINDlwDkdlD 131 (353)
T KOG1381|consen 55 SLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAAD-AGLL-PS-IKMLALFGVGALLMRGAGCTINDLWDKDLD 131 (353)
T ss_pred hhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccC-CCcc-ch-hHHHHHhcccHHHhccCCceehhhhhhhhh
Confidence 3344455679999999999998888774332 2333432 1222 22 222233347789999999999999999999
Q ss_pred ccC--CCCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhH--HHHH
Q 037091 177 KVN--KPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLM--AAVT 252 (277)
Q Consensus 177 rin--kp~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll--~~l~ 252 (277)
+.. .+.|||+||++|+++|+.+..+.+.+|+.+...+|.....++.. ++.+...|+. .||++++ ..|.
T Consensus 132 ~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~-sl~~v~~ypl-------~kr~TY~pq~vLg 203 (353)
T KOG1381|consen 132 AKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGAS-SLALVITYPL-------MKRFTYWPQLVLG 203 (353)
T ss_pred hhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhccc-ccccEEEeeh-------hhhcchhHHHHHh
Confidence 864 57899999999999999999999999999999999998888875 8888899985 6676655 4556
Q ss_pred HHHHHHHHHH
Q 037091 253 IISMNGLLLL 262 (277)
Q Consensus 253 i~~~~g~lv~ 262 (277)
..+.||.++.
T Consensus 204 ltfnwGAllG 213 (353)
T KOG1381|consen 204 LTFNWGALLG 213 (353)
T ss_pred hhcchhhhhc
Confidence 6778887664
No 51
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.44 E-value=3.2e-12 Score=120.25 Aligned_cols=101 Identities=18% Similarity=0.159 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCCCcccCCccChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCC
Q 037091 155 VPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSI 234 (277)
Q Consensus 155 la~ll~~~a~~viND~~D~eiDrinkp~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~ 234 (277)
+++.+...++|++||++|+|+|++|+|+||.+ +.+.+..+.++..++|+++++..+.+ .++++ +.+.++.||.
T Consensus 65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~--ll~ll-~~l~g~lYS~ 137 (307)
T PRK13591 65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGML--LLAFL-PFITGYLYSK 137 (307)
T ss_pred HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHH-HHHHHHHhcC
Confidence 34455678899999999999999999999986 88999999999999999999888754 34443 7778999995
Q ss_pred C---ccCcccccchhhHHHHHHHHHHHHHHH
Q 037091 235 D---LPPLLRWKGNPLMAAVTIISMNGLLLL 262 (277)
Q Consensus 235 ~---lp~P~rlKr~~ll~~l~i~~~~g~lv~ 262 (277)
- .|.|.|+|+++.++++.++..+|..+.
T Consensus 138 Glk~~P~plklK~~~glGnl~V~i~~G~~i~ 168 (307)
T PRK13591 138 GIKIGKFALKLKGGLGVKNIVVGITWGGFIA 168 (307)
T ss_pred CCCCCCccccccCCCchhHHHHHHHHHHHHH
Confidence 1 133568999999999999999997554
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.17 E-value=8.4e-12 Score=117.37 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=111.5
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--CCCcc
Q 037091 108 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PHLPL 185 (277)
Q Consensus 108 ~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~eiDrink--p~RPL 185 (277)
..+.|+++.||+.....++....|+++|.++ +++. .++.+-+++.++.++++.+||+++.+.|..|+ +.||+
T Consensus 93 ~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~---~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rpl 166 (409)
T KOG1380|consen 93 YARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFP---TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPL 166 (409)
T ss_pred hHHHHHHhcccceEEEEeeeccccccccccC---CCcc---hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhccccc
Confidence 4678999999987776667777788888643 4443 46788899999999999999999999999986 58999
Q ss_pred cCCccChHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHHH
Q 037091 186 ACGDFSMGEGLAITIASPLMAVAMGIM-LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNG 258 (277)
Q Consensus 186 ~SG~IS~r~A~~l~~~ll~lgliLa~~-l~~~~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g 258 (277)
++|+|||-.|..++.+....|+.+.++ .|+....++..=.++++++|+ | +||.. ..+-.++.+.|
T Consensus 167 v~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT---P----lKrih-iinTWvGavVG 232 (409)
T KOG1380|consen 167 VRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT---P----LKRIH-IINTWVGAVVG 232 (409)
T ss_pred ccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc---c----hhhhh-hhhhHHHHHhc
Confidence 999999999999999999999876554 899888888764567788999 5 89987 44555555555
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=97.55 E-value=2e-05 Score=72.07 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=106.3
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccCCCCC
Q 037091 106 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQNPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNKPHL 183 (277)
Q Consensus 106 ~~~l~~~l~l~RP~~~~~~ll~~l~g~llA~~~~~~~~~~~l~~~ll~lla~ll~~~a~~viND~~D~e--iDrinkp~R 183 (277)
.++.+.|+...||+.....+.+...|..+|...-+..++. +..++++.++++..+.+++.+|.|+|.- +|+...-+|
T Consensus 58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~-l~~~fl~a~avlavh~agnlvntyfdf~kgid~kkaddr 136 (359)
T KOG4581|consen 58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFR-LATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDR 136 (359)
T ss_pred HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchh-HHHHHHHHhhheeeecccchhhhhhhhhhccccccccch
Confidence 4578899999999999888889999999985321111222 3346677888889999999999999964 888777799
Q ss_pred cccCCccChHHHHHHHHHHHHHHHHHH---HHhhHH---HHHHHHHHHHHHhhhcCCCccCcccccchhhHHHHHHHHHH
Q 037091 184 PLACGDFSMGEGLAITIASPLMAVAMG---IMLRSP---PLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN 257 (277)
Q Consensus 184 PL~SG~IS~r~A~~l~~~ll~lgliLa---~~l~~~---~lll~ll~~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~ 257 (277)
.++...+.+.+...++..+..+|...+ ..++|. -+.+..++++--.+.|+. -+-+|... ++-+.|....
T Consensus 137 tlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytg----gigfkyia-lgdliili~f 211 (359)
T KOG4581|consen 137 TLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTG----GIGFKYIA-LGDLIILILF 211 (359)
T ss_pred hHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEec----ccceEEEe-ccCEEEEEee
Confidence 999999999999988888888775443 234443 222222334445678986 46688877 6666666666
Q ss_pred HH
Q 037091 258 GL 259 (277)
Q Consensus 258 g~ 259 (277)
|+
T Consensus 212 gp 213 (359)
T KOG4581|consen 212 GP 213 (359)
T ss_pred ch
Confidence 63
No 54
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=94.61 E-value=0.44 Score=45.19 Aligned_cols=45 Identities=11% Similarity=-0.053 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHH
Q 037091 157 AIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPL 204 (277)
Q Consensus 157 ~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~ 204 (277)
..+........||+.|+|.|+.+ |++-|.-=|+ +.+..+...+.+
T Consensus 183 ~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~---~~a~~ly~~l~~ 228 (304)
T PRK07419 183 LGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGT---KRGAQLLPWIVG 228 (304)
T ss_pred HHHHHHHHHHHcCCcchhhHHHcCCcceeeeech---HhHHHHHHHHHH
Confidence 34566778889999999999986 5677765554 444444443333
No 55
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=94.11 E-value=0.27 Score=46.70 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHHH
Q 037091 153 CMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPLM 205 (277)
Q Consensus 153 ~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~l 205 (277)
..+...+..+.....||+.|+|.|+.+ |++-|..=|+ +.+..+..++.++
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~---~~a~~l~~~l~~~ 244 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGR---EKGVVLFAILFYA 244 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcH---HhHHHHHHHHHHH
Confidence 445566677788999999999999986 5677765554 4444444444443
No 56
>PRK13591 ubiA prenyltransferase; Provisional
Probab=93.93 E-value=0.23 Score=47.28 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=39.8
Q ss_pred HhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHHHH----HHHHHH-hhHHHHHHHHHHHHHHhhhcCC
Q 037091 166 AINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPLMA----VAMGIM-LRSPPLVIGFIIWCIVGGAYSI 234 (277)
Q Consensus 166 viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~lg----liLa~~-l~~~~lll~ll~~~ll~~~YS~ 234 (277)
++||+.|+|.|+.+ ++.-|+.=|+=..+.......++..+. +.+++. ..|...+.+++..++....|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 78999999999987 568888766543332222222222222 222222 1233344455557777888986
No 57
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=93.69 E-value=0.87 Score=42.69 Aligned_cols=49 Identities=10% Similarity=-0.031 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHHHH
Q 037091 155 VPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPLMA 206 (277)
Q Consensus 155 la~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~lg 206 (277)
+...+...+....||+-|+|.|+.+ |++-|.-=| .+.+..+...+..++
T Consensus 168 l~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~l~~~l~~~~ 217 (285)
T TIGR02235 168 ILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLG---TKLAAKIVPWVISLS 217 (285)
T ss_pred HHHHHHHHHHHHhcCCccchhHHHcCCcceeheec---HHhHHHHHHHHHHHH
Confidence 3444667788899999999999986 567776444 455555544444443
No 58
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=93.60 E-value=0.72 Score=43.93 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccCCC-CCcccCCcc
Q 037091 151 FKCMVPAIMMNNYANAINQLADVHIDKVNKP-HLPLACGDF 190 (277)
Q Consensus 151 ll~lla~ll~~~a~~viND~~D~eiDrinkp-~RPL~SG~I 190 (277)
++..+.+....+..+..|++.|+|.|+.|+| .-|.-=|+-
T Consensus 179 ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~ 219 (303)
T COG1575 179 LLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRK 219 (303)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccH
Confidence 4445566667788889999999999999865 455434443
No 59
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=92.87 E-value=1.8 Score=40.05 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhccccccccccC-CCCCcccCCc
Q 037091 154 MVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGD 189 (277)
Q Consensus 154 lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~ 189 (277)
.+...+.+..-..+||..|+|.|+.. .|.-|+.-|+
T Consensus 164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~ 200 (282)
T TIGR01475 164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence 44455556677789999999999864 5788887773
No 60
>PLN02922 prenyltransferase
Probab=92.62 E-value=0.58 Score=44.54 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHH
Q 037091 153 CMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPL 204 (277)
Q Consensus 153 ~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~ 204 (277)
.-+...+..+.....||+.|+|.|+.+ |++-|..=| .+.+..+..++..
T Consensus 193 ~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~l~~~l~~ 242 (315)
T PLN02922 193 ASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLG---TEKGSRVVRWAVL 242 (315)
T ss_pred HHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEC---hHHHHHHHHHHHH
Confidence 334455667788899999999999987 567776555 4444444444433
No 61
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=92.62 E-value=1.5 Score=40.37 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091 155 VPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF 190 (277)
Q Consensus 155 la~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I 190 (277)
+..++......++||+.|+|.|+.+ .+.-|..=|+=
T Consensus 168 ~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~ 204 (285)
T PRK12872 168 VFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKE 204 (285)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchH
Confidence 4444556666789999999999985 57888877763
No 62
>PLN00012 chlorophyll synthetase; Provisional
Probab=92.59 E-value=1.6 Score=42.72 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091 156 PAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF 190 (277)
Q Consensus 156 a~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I 190 (277)
...+...+....||+-|+|.|+.. ++.-|+.-|+=
T Consensus 260 ~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~ 295 (375)
T PLN00012 260 LYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVE 295 (375)
T ss_pred HHHHHHHHHHHHhhhcchhhHHHcCCcccceeechH
Confidence 344566778899999999999875 68899877763
No 63
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=92.36 E-value=3.1 Score=38.55 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHHHH
Q 037091 153 CMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPLMA 206 (277)
Q Consensus 153 ~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~lg 206 (277)
..+...+........||+.|+|.|+.+ ++.-|.-=| .+.+..+..++.+++
T Consensus 173 ~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~~~~ 224 (293)
T PRK06080 173 PALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALLALA 224 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHHHHH
Confidence 334445566777899999999999986 566666444 344444444444433
No 64
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=91.13 E-value=2.3 Score=39.54 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCccC
Q 037091 153 CMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFS 191 (277)
Q Consensus 153 ~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS 191 (277)
..++.++-..+-..+|++.|+|.|+.. .|.-|..-|+-+
T Consensus 165 l~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~ 204 (281)
T TIGR01474 165 LYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNT 204 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhh
Confidence 345566667778889999999999975 688888888644
No 65
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=90.78 E-value=2.8 Score=39.26 Aligned_cols=48 Identities=19% Similarity=0.127 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHHH
Q 037091 155 VPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPLM 205 (277)
Q Consensus 155 la~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~l 205 (277)
+...+...+....||+.|+|.|+.+ |++-|.-=| .+.+..+...+.+.
T Consensus 171 l~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG---~~~a~~l~~~l~~~ 219 (284)
T TIGR00751 171 VATGLLACAVLNINNLRDIPTDARAGKNTLAVRLG---DARTRMYHQGLLAV 219 (284)
T ss_pred HHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcc---hHhHHHHHHHHHHH
Confidence 3344555777889999999999986 566665445 44444444444333
No 66
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=90.35 E-value=4.1 Score=38.30 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHHHHHHHHHHh
Q 037091 155 VPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPLMAVAMGIML 213 (277)
Q Consensus 155 la~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l 213 (277)
.++.+...+..++||+-|+|.||.+ ++.-|. ++-.+.+..+..++.+++.++....
T Consensus 167 ~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~ 223 (282)
T PRK13105 167 AAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLAL 223 (282)
T ss_pred HHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344457778899999999999986 566665 4556777777777777665554433
No 67
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=90.22 E-value=2.9 Score=39.41 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHH
Q 037091 157 AIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITI 200 (277)
Q Consensus 157 ~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~ 200 (277)
..+...+....||+.|+|.|+.+ ++.-|..-|+ +.+..+..
T Consensus 192 ~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~---~~a~~~~~ 233 (306)
T TIGR02056 192 YSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGI---ETAAWICV 233 (306)
T ss_pred HHHHHHHHHHHHHccChHHHHHcCCcCcchhcCh---HHHHHHHH
Confidence 33466677799999999999975 6788876664 44444444
No 68
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=90.17 E-value=3.5 Score=39.02 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091 158 IMMNNYANAINQLADVHIDKVN-KPHLPLACGDF 190 (277)
Q Consensus 158 ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I 190 (277)
.+...+....||+.|+|.|+.. ++.-|+.-|+-
T Consensus 199 ~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~ 232 (314)
T PRK07566 199 SLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEK 232 (314)
T ss_pred HHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHH
Confidence 3445666899999999999975 67888877763
No 69
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=89.76 E-value=3.6 Score=38.14 Aligned_cols=39 Identities=13% Similarity=-0.006 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091 152 KCMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF 190 (277)
Q Consensus 152 l~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I 190 (277)
+..+...+....-..+|++.|+|.|+.+ .|.-|+.-|+-
T Consensus 169 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~ 208 (285)
T PRK12847 169 LLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNK 208 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccc
Confidence 3445556667777789999999999975 57888877753
No 70
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=89.51 E-value=17 Score=34.10 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHHHHHHH
Q 037091 155 VPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPLMAVAM 209 (277)
Q Consensus 155 la~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~lgliL 209 (277)
++..+...+...+||+-|+|.|+.. ++.-|..=| .+.+..+..++.+++.++
T Consensus 172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG---~~~a~~~~~~~~~~a~~~ 224 (282)
T PRK12875 172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLG---ERRTYAYCAACWLLAAAA 224 (282)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHcCCccchhhcc---HhhHHHHHHHHHHHHHHH
Confidence 3445666777899999999999975 567776444 455665555555554444
No 71
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=88.33 E-value=2.4 Score=39.18 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=24.7
Q ss_pred HHHHHHHHhhccccccccccC-CCCCcccCCc
Q 037091 159 MMNNYANAINQLADVHIDKVN-KPHLPLACGD 189 (277)
Q Consensus 159 l~~~a~~viND~~D~eiDrin-kp~RPL~SG~ 189 (277)
+...+....||+.|+|.|+.+ ++.-|+.=|+
T Consensus 172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~ 203 (283)
T TIGR01476 172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203 (283)
T ss_pred HHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence 445667899999999999985 6788877666
No 72
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=88.27 E-value=16 Score=34.17 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhccccccccccC-CCCCcccCCccChHHH
Q 037091 158 IMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEG 195 (277)
Q Consensus 158 ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A 195 (277)
.+........||+-|+|.|+.+ +++-|. ++-.+.+
T Consensus 181 ~l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a 216 (296)
T PRK05951 181 GLLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA 216 (296)
T ss_pred HHHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence 3445677899999999999986 556665 3444555
No 73
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=87.71 E-value=4.4 Score=38.00 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091 154 MVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF 190 (277)
Q Consensus 154 lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I 190 (277)
.+...+-+.+-..+|.+.|+|.|+.. .|.-|+.-|+-
T Consensus 168 ~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~ 205 (291)
T PRK12886 168 GLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVN 205 (291)
T ss_pred HHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCch
Confidence 34444445555678888999999864 68888887764
No 74
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=87.70 E-value=7.5 Score=36.06 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCccC
Q 037091 152 KCMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFS 191 (277)
Q Consensus 152 l~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS 191 (277)
+..+..++-...-...|.+.|+|.|+.. .|.-|+.-|+=.
T Consensus 166 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~ 206 (282)
T PRK12848 166 LLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYD 206 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcccc
Confidence 4445566666777788999999999976 478888777643
No 75
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=87.17 E-value=4.3 Score=38.43 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCccChHHHHHHHHHHHHH
Q 037091 153 CMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFSMGEGLAITIASPLM 205 (277)
Q Consensus 153 ~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS~r~A~~l~~~ll~l 205 (277)
..++.++-..+-..+|+..|+|.|+.. -+.-|+-=|+-+.+-+..+..+..++
T Consensus 182 l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G~~a~~~~~~~~~~~v~l 235 (300)
T PRK13106 182 FVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLGKWALTFAGLNQLFSVVL 235 (300)
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHhhhHHHHHHHHHHHHHHH
Confidence 344566667777899999999999865 47888777744444433333333333
No 76
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=87.16 E-value=7.9 Score=36.20 Aligned_cols=39 Identities=13% Similarity=0.009 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091 152 KCMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF 190 (277)
Q Consensus 152 l~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I 190 (277)
+..+...+-..+-..+|++.|+|.|+.. .|.-|+-=|+-
T Consensus 163 ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~ 202 (284)
T PRK12888 163 LLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVR 202 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCch
Confidence 3344555666678899999999999975 57788766653
No 77
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=86.80 E-value=5.8 Score=37.41 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091 154 MVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF 190 (277)
Q Consensus 154 lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I 190 (277)
.+...+.+..-...||+.|+|.|+.. .|.-|+.-|+-
T Consensus 181 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~ 218 (297)
T PRK12871 181 MVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMK 218 (297)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechH
Confidence 35556667778899999999999975 68888888864
No 78
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=86.51 E-value=3.5 Score=37.88 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhccccccccccC-CCCCcccCCc
Q 037091 156 PAIMMNNYANAINQLADVHIDKVN-KPHLPLACGD 189 (277)
Q Consensus 156 a~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~ 189 (277)
..++...+-...||+.|+|.|+.+ .+.-|..-|+
T Consensus 163 ~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~ 197 (279)
T PRK12884 163 MAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE 197 (279)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence 344455566889999999999876 5778876665
No 79
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=86.25 E-value=3.5 Score=39.02 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091 153 CMVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF 190 (277)
Q Consensus 153 ~lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I 190 (277)
..+..++...+...+||+.|+|.|+.+ ++.-|+.=|+-
T Consensus 187 ~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~ 225 (308)
T PRK12887 187 LTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQ 225 (308)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHH
Confidence 344555667788899999999999986 56777655543
No 80
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=86.22 E-value=3.4 Score=39.66 Aligned_cols=38 Identities=18% Similarity=0.093 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhccccccccccC-CCCCcccCCccC
Q 037091 154 MVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDFS 191 (277)
Q Consensus 154 lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~IS 191 (277)
.+...+...+...+||+.|+|.|+.. ++.-|+.=|+=.
T Consensus 186 ~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~ 224 (331)
T PRK12392 186 AGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKN 224 (331)
T ss_pred HHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhh
Confidence 34455667777889999999999975 577887666543
No 81
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=85.67 E-value=21 Score=33.55 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091 154 MVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF 190 (277)
Q Consensus 154 lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I 190 (277)
.+...+-+.+-..+|++.|+|.|+.. .|.-|+.-|+-
T Consensus 173 ~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~ 210 (291)
T PRK12874 173 ALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEK 210 (291)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhH
Confidence 34555667777889999999999864 58888877763
No 82
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=85.44 E-value=3.7 Score=37.93 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhccccccccccC-CCCCcccCCc
Q 037091 155 VPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGD 189 (277)
Q Consensus 155 la~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~ 189 (277)
+..++.+.+-..+||+.|+|.|+.. .|.-|+.-|+
T Consensus 161 ~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~ 196 (279)
T PRK09573 161 LCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGI 196 (279)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhH
Confidence 3444555567788999999999975 5788886664
No 83
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=84.53 E-value=10 Score=35.54 Aligned_cols=42 Identities=7% Similarity=0.015 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccCC-CCCcccCCccChH
Q 037091 152 KCMVPAIMMNNYANAINQLADVHIDKVNK-PHLPLACGDFSMG 193 (277)
Q Consensus 152 l~lla~ll~~~a~~viND~~D~eiDrink-p~RPL~SG~IS~r 193 (277)
+..+..++-..+-..+|++.|+|.|+..+ |.-|+.=|+=+..
T Consensus 170 ~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~ 212 (290)
T PRK12870 170 LLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPE 212 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHH
Confidence 33456667777788999999999999754 7777766655433
No 84
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=82.19 E-value=7.4 Score=35.81 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhccccccccccC-CCCCcccCCc
Q 037091 155 VPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGD 189 (277)
Q Consensus 155 la~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~ 189 (277)
+..++...+-..+||+.|+|.|+.+ .|.-|+.-|+
T Consensus 164 ~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~ 199 (276)
T PRK12882 164 ALAALATLAREIIKDVEDIEGDRAEGARTLPILIGV 199 (276)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH
Confidence 3334455667899999999999976 4788876666
No 85
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=81.48 E-value=6.1 Score=36.40 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=24.5
Q ss_pred HHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091 159 MMNNYANAINQLADVHIDKVN-KPHLPLACGDF 190 (277)
Q Consensus 159 l~~~a~~viND~~D~eiDrin-kp~RPL~SG~I 190 (277)
+...+-...||+.|+|.|+.. .|.-|+.-|+-
T Consensus 165 l~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~ 197 (277)
T PRK12883 165 LVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKK 197 (277)
T ss_pred HHHHHHHHHhhhhhhccHHHcCCcCcChHhcHH
Confidence 344456678999999999975 58888877763
No 86
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=81.06 E-value=19 Score=34.20 Aligned_cols=37 Identities=16% Similarity=0.027 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhccccccccccC-CCCCcccCCcc
Q 037091 154 MVPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGDF 190 (277)
Q Consensus 154 lla~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~I 190 (277)
.+..++-...-..++++.|+|.|+.. .|.-|..-|+=
T Consensus 198 ~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~ 235 (314)
T PRK12878 198 YAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDH 235 (314)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchh
Confidence 34445555566677899999999874 68888877763
No 87
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=80.86 E-value=21 Score=33.59 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCC-CCCcccCCc
Q 037091 153 CMVPAIMMNNYANAINQLADVHIDKVNK-PHLPLACGD 189 (277)
Q Consensus 153 ~lla~ll~~~a~~viND~~D~eiDrink-p~RPL~SG~ 189 (277)
..++.++-..+-.++.++.|+|.|+..+ +.-|+-=|+
T Consensus 164 l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~ 201 (286)
T PRK12895 164 IFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGI 201 (286)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCC
Confidence 3455566666678999999999999764 555554443
No 88
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=80.69 E-value=26 Score=33.30 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhccccccccccCC-CCCcccCCccC
Q 037091 156 PAIMMNNYANAINQLADVHIDKVNK-PHLPLACGDFS 191 (277)
Q Consensus 156 a~ll~~~a~~viND~~D~eiDrink-p~RPL~SG~IS 191 (277)
+..+...+-.++.+..|+|.|+..+ +.-|..=|+-.
T Consensus 180 ~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~ 216 (300)
T PRK12876 180 SFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKK 216 (300)
T ss_pred HHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchh
Confidence 3444444556777899999999764 67777666543
No 89
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=77.71 E-value=31 Score=31.92 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCC-CCCcccCC
Q 037091 150 AFKCMVPAIMMNNYANAINQLADVHIDKVNK-PHLPLACG 188 (277)
Q Consensus 150 ~ll~lla~ll~~~a~~viND~~D~eiDrink-p~RPL~SG 188 (277)
..+..++..+-..+-.+++|+.|+|-||.+. +.-|..=|
T Consensus 169 ~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G 208 (289)
T COG0382 169 AWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFG 208 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhC
Confidence 3455667777788888999999999999875 44554444
No 90
>PLN02878 homogentisate phytyltransferase
Probab=75.00 E-value=17 Score=34.29 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhccccccccccC-CCCCcccCCc
Q 037091 156 PAIMMNNYANAINQLADVHIDKVN-KPHLPLACGD 189 (277)
Q Consensus 156 a~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~ 189 (277)
...+...+...+||+-|+|-||.. .+.-|+.=|+
T Consensus 164 f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~ 198 (280)
T PLN02878 164 FMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQ 198 (280)
T ss_pred HHHHHHHHHHHHhhCcCchhHHHCCCceechhhCh
Confidence 344455667799999999999986 4677775553
No 91
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=67.22 E-value=78 Score=29.97 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhccccccccccCC-CCCcccCCcc
Q 037091 155 VPAIMMNNYANAINQLADVHIDKVNK-PHLPLACGDF 190 (277)
Q Consensus 155 la~ll~~~a~~viND~~D~eiDrink-p~RPL~SG~I 190 (277)
++.++-+..-..+=.+.|+|.|+..+ |.-|..-|+-
T Consensus 177 ~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~ 213 (294)
T PRK12873 177 LATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN 213 (294)
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh
Confidence 34444444444555667999999765 7788877863
No 92
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=65.95 E-value=21 Score=31.50 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhccccccccccC-CCCCcc
Q 037091 157 AIMMNNYANAINQLADVHIDKVN-KPHLPL 185 (277)
Q Consensus 157 ~ll~~~a~~viND~~D~eiDrin-kp~RPL 185 (277)
..+........||+-|+|.|+.. ++.-|.
T Consensus 155 ~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v 184 (257)
T PF01040_consen 155 FFLLIFAIMFFNDIRDIEGDRKAGRRTLPV 184 (257)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHcCCcchHH
Confidence 34556667778899999999764 455443
No 93
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=64.69 E-value=80 Score=29.47 Aligned_cols=35 Identities=11% Similarity=-0.039 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhccccccccccC-CCCCcccCCc
Q 037091 155 VPAIMMNNYANAINQLADVHIDKVN-KPHLPLACGD 189 (277)
Q Consensus 155 la~ll~~~a~~viND~~D~eiDrin-kp~RPL~SG~ 189 (277)
+..++-+..-...+.+.|+|-|+.. -|.-|+.-|+
T Consensus 174 ~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~ 209 (296)
T PRK04375 174 LIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGI 209 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCH
Confidence 3344444444555568888888654 4777776664
No 94
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=57.16 E-value=1.2e+02 Score=28.40 Aligned_cols=23 Identities=17% Similarity=0.145 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhhccccccc
Q 037091 153 CMVPAIMMNNYANAINQLADVHI 175 (277)
Q Consensus 153 ~lla~ll~~~a~~viND~~D~ei 175 (277)
++.+...+.+--..+|+++|.+.
T Consensus 111 lwtas~~~~al~~~lN~i~~~~~ 133 (303)
T COG1295 111 LWTASNGMSALRDALNKIWRVKP 133 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC
Confidence 34445555555667788877766
No 95
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=51.38 E-value=1.6e+02 Score=27.16 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=16.0
Q ss_pred hhcccccccccc-CCCCCcccCCc
Q 037091 167 INQLADVHIDKV-NKPHLPLACGD 189 (277)
Q Consensus 167 iND~~D~eiDri-nkp~RPL~SG~ 189 (277)
-|++.|+|-|+. +.|.-|..-|+
T Consensus 178 ~l~~~d~edd~~~G~~tlpv~~G~ 201 (279)
T PRK12869 178 SLALKYREDYRRAGVPMLPAVVGE 201 (279)
T ss_pred HHHHHhHHhHHHcCCeecceeecH
Confidence 356778888865 45777876664
No 96
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=50.11 E-value=2.2e+02 Score=26.73 Aligned_cols=25 Identities=24% Similarity=0.078 Sum_probs=17.8
Q ss_pred HhhccccccccccCC-CCCcccCCcc
Q 037091 166 AINQLADVHIDKVNK-PHLPLACGDF 190 (277)
Q Consensus 166 viND~~D~eiDrink-p~RPL~SG~I 190 (277)
.+-...|+|.|+..+ |.-|..-|+-
T Consensus 184 ~~ya~~D~e~D~~~Gi~sl~v~~G~~ 209 (289)
T PLN02809 184 TIYAHQDKEDDLKVGVKSTALRFGDD 209 (289)
T ss_pred HHHHHhchhhHHhCCCcccchhhcHH
Confidence 444556999999764 7788776764
No 97
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=48.25 E-value=2e+02 Score=26.46 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=15.0
Q ss_pred ccccccccccC-CCCCcccCCc
Q 037091 169 QLADVHIDKVN-KPHLPLACGD 189 (277)
Q Consensus 169 D~~D~eiDrin-kp~RPL~SG~ 189 (277)
.+.|+|.|+.. .|.-|..-|+
T Consensus 179 a~~~~~dd~~~G~~tl~v~~G~ 200 (280)
T TIGR01473 179 ALKYKDDYRAAGIPMLPVVKGE 200 (280)
T ss_pred HHHhhhhHHHCCCccCCcccCH
Confidence 45788888764 4777776665
No 98
>TIGR00766 ribonuclease, putative. This family shows similarity to ribonuclease BN
Probab=45.21 E-value=2.4e+02 Score=25.55 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhccccccc
Q 037091 156 PAIMMNNYANAINQLADVHI 175 (277)
Q Consensus 156 a~ll~~~a~~viND~~D~ei 175 (277)
+...+..--.++|++++.+.
T Consensus 96 as~~~~~l~~aln~i~~~~~ 115 (263)
T TIGR00766 96 GLNWMGNLREAISDVWERPP 115 (263)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 33445556678999988764
No 99
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=40.65 E-value=2.9e+02 Score=27.12 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhccccccc
Q 037091 156 PAIMMNNYANAINQLADVHI 175 (277)
Q Consensus 156 a~ll~~~a~~viND~~D~ei 175 (277)
+..+++.--.++|++++.+.
T Consensus 113 a~~~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 113 LLILLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 33455666678999987653
No 100
>PRK01637 hypothetical protein; Reviewed
Probab=35.40 E-value=3.6e+02 Score=24.86 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhcccccccc
Q 037091 155 VPAIMMNNYANAINQLADVHID 176 (277)
Q Consensus 155 la~ll~~~a~~viND~~D~eiD 176 (277)
.+...+++--.++|++++.+.+
T Consensus 104 sa~~~~~~l~~a~N~i~~~~~~ 125 (286)
T PRK01637 104 VALMLISSIDKALNTIWRSKRK 125 (286)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC
Confidence 3445566667789999987655
No 101
>PF09933 DUF2165: Predicted small integral membrane protein (DUF2165); InterPro: IPR018681 This family of various hypothetical prokaryotic proteins has no known function.
Probab=35.33 E-value=3e+02 Score=23.89 Aligned_cols=52 Identities=19% Similarity=0.099 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcccccc-----------ccccCCCCCcccCCccChHHHHHHHHHHHHHHHHH
Q 037091 157 AIMMNNYANAINQLADVH-----------IDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAM 209 (277)
Q Consensus 157 ~ll~~~a~~viND~~D~e-----------iDrinkp~RPL~SG~IS~r~A~~l~~~ll~lgliL 209 (277)
.+..-....++||+.|++ .|.. -|.-|+--..++.......+..+.++.-.+
T Consensus 13 ~~Al~~~Lva~~NitDy~sN~~fV~hVlsMdt~-f~~~~l~~RAI~sp~l~~~ay~~II~~E~~ 75 (160)
T PF09933_consen 13 AIALFATLVAFNNITDYGSNFQFVRHVLSMDTT-FPDPPLMWRAITSPWLHHAAYILIIAWEAL 75 (160)
T ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHh-cCCCCcccccCCCHHHHHHHHHHHHHHHHH
Confidence 333444556788888876 3433 244455555566565555555555554433
No 102
>PRK13595 ubiA prenyltransferase; Provisional
Probab=35.26 E-value=1.6e+02 Score=27.95 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhccccccccccCC-CCCcccCCccChHHHHHHHHHHHHHHHHHHHHh
Q 037091 158 IMMNNYANAINQLADVHIDKVNK-PHLPLACGDFSMGEGLAITIASPLMAVAMGIML 213 (277)
Q Consensus 158 ll~~~a~~viND~~D~eiDrink-p~RPL~SG~IS~r~A~~l~~~ll~lgliLa~~l 213 (277)
.+-..+..++-++.|+|.||... +.-|. ++-.+.+..++.++.+++.++.+.+
T Consensus 179 ~~w~~g~dii~ai~DiegDr~~Gi~Slpv---~lG~r~a~~~a~~~~~~a~~~~~~~ 232 (292)
T PRK13595 179 MAWSVGKHAFDAAQDIPADRAAGTRTVAT---TLGVRGTALYALAWFLLAGALLWPV 232 (292)
T ss_pred HHHHHHHHHHHhccChHhHHHcCCeechH---HhCcHhHHHHHHHHHHHHHHHHHHh
Confidence 33346677888888899999864 55554 3345666777777777766555444
No 103
>PF01219 DAGK_prokar: Prokaryotic diacylglycerol kinase; InterPro: IPR000829 Diacylglycerol kinase (2.7.1.107 from EC) (DAGK) is an enzyme that catalyses the formation of phosphatidic acid from diacylglycerol and ATP, an important step in phospholipid biosynthesis. In bacteria DAGK is very small (13 to 15 kD) membrane protein which seems to contain three transmembrane domains []. The best conserved region, is a stretch of 12 residues which are located in a cytoplasmic loop between the second and third transmembrane domains.; GO: 0004143 diacylglycerol kinase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2KDC_B.
Probab=35.00 E-value=1.2e+02 Score=24.33 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCCCccc
Q 037091 155 VPAIMMNNYANAINQLADVHIDKVNKPHLPLA 186 (277)
Q Consensus 155 la~ll~~~a~~viND~~D~eiDrinkp~RPL~ 186 (277)
+.+.++-.....+|-..+.-.|.+.+.+.|.+
T Consensus 46 i~~~~~Vl~~EllNTAIE~~vD~v~~~~~~~a 77 (104)
T PF01219_consen 46 ILAIFLVLIAELLNTAIERLVDLVSPEYHPLA 77 (104)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTT----S-TTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHcchhhcHHH
Confidence 44445566788999999999999887777754
No 104
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=34.82 E-value=2.6e+02 Score=23.37 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCCCCCccc
Q 037091 153 CMVPAIMMNNYANAINQLADVHIDKVNKPHLPLA 186 (277)
Q Consensus 153 ~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~ 186 (277)
.++..+++......+|--.+.-.|++.+.+-|++
T Consensus 58 ll~~si~lvl~vEllNTAIEa~VD~~s~e~hela 91 (123)
T COG0818 58 LLILSIFLVLIVELLNTAIEAVVDLISPEYHELA 91 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHH
Confidence 3455566667788899888888998876665553
No 105
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=33.52 E-value=3.4e+02 Score=28.72 Aligned_cols=42 Identities=10% Similarity=0.064 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccccC---CCCCcccCCccC
Q 037091 150 AFKCMVPAIMMNNYANAINQLADVHIDKVN---KPHLPLACGDFS 191 (277)
Q Consensus 150 ~ll~lla~ll~~~a~~viND~~D~eiDrin---kp~RPL~SG~IS 191 (277)
.+.++-++...+.....+|+...+..|... --.||++...-|
T Consensus 486 yvVlFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPfp~r~~~ 530 (647)
T KOG2513|consen 486 YVVLFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPFPRRVAN 530 (647)
T ss_pred HHHHHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCCcchhhh
Confidence 445555566677778899999999999852 346798874333
No 106
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.05 E-value=3.1e+02 Score=23.43 Aligned_cols=20 Identities=10% Similarity=0.366 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037091 250 AVTIISMNGLLLLFPFFIHF 269 (277)
Q Consensus 250 ~l~i~~~~g~lv~~g~~~~~ 269 (277)
++++.+.+++++..|.+.-.
T Consensus 42 g~~~lAlg~vL~~~g~~~~~ 61 (191)
T PF04156_consen 42 GIALLALGVVLLSLGLLCLL 61 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445566666665543
No 107
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=29.23 E-value=4.3e+02 Score=23.85 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhcccccccc
Q 037091 152 KCMVPAIMMNNYANAINQLADVHID 176 (277)
Q Consensus 152 l~lla~ll~~~a~~viND~~D~eiD 176 (277)
..+-+...++.--.++|+++|.+.+
T Consensus 92 ~lwsas~~~~~l~~~ln~i~~~~~~ 116 (259)
T TIGR00765 92 LIVTALLLINNIDSTLNKIWRVKPR 116 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3344555667777799999987654
No 108
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=28.94 E-value=1.2e+02 Score=25.94 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=9.7
Q ss_pred cccchhhHHHHHHHHHHHHH
Q 037091 241 RWKGNPLMAAVTIISMNGLL 260 (277)
Q Consensus 241 rlKr~~ll~~l~i~~~~g~l 260 (277)
|.+...++....-+++.+++
T Consensus 147 r~~~~~~~~~~~aa~~~~~~ 166 (193)
T PF06738_consen 147 RRRLNSFIQEFIAAFLASLL 166 (193)
T ss_pred hccchHHHHHHHHHHHHHHH
Confidence 45555555554444444433
No 109
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=28.55 E-value=2.6e+02 Score=23.10 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=22.2
Q ss_pred ccccCCCCCcccCCccChHHHHHHHHHHHHHHHHHH
Q 037091 175 IDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMG 210 (277)
Q Consensus 175 iDrinkp~RPL~SG~IS~r~A~~l~~~ll~lgliLa 210 (277)
-|++|. .|.+=+-+|..|....+.+..++|++++
T Consensus 8 p~RLN~--ePvV~rGlT~~El~~~a~~~~~~g~~~g 41 (121)
T PF11990_consen 8 PDRLNR--EPVVFRGLTADELGLAAGVGFVAGLVVG 41 (121)
T ss_pred hhhhcC--CCCeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 367774 4555567888888777766666655443
No 110
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=28.44 E-value=83 Score=22.22 Aligned_cols=13 Identities=23% Similarity=0.723 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q 037091 260 LLLFPFFIHFQKI 272 (277)
Q Consensus 260 lv~~g~~~~~~~~ 272 (277)
+|..|+|.||.+.
T Consensus 13 lv~~gy~~hmkry 25 (54)
T PF13260_consen 13 LVVVGYFCHMKRY 25 (54)
T ss_pred HHHHHHHHHHHHH
Confidence 6778999999875
No 111
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=28.38 E-value=4.2e+02 Score=26.22 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=24.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037091 242 WKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLG 275 (277)
Q Consensus 242 lKr~~ll~~l~i~~~~g~lv~~g~~~~~~~~~~~ 275 (277)
++.-|=.++..+.++-..++.+-.|+-+-+.+++
T Consensus 415 ~~~DPa~~s~p~itt~~D~~g~~~~~~~a~~~l~ 448 (449)
T TIGR00400 415 LKLDPALMSGPLITTIADALTLIIYFNIAKWVLV 448 (449)
T ss_pred cCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444556677778888888888888877776664
No 112
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=27.89 E-value=3.9e+02 Score=22.96 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 037091 150 AFKCMVPAIMMNNYANAINQLA 171 (277)
Q Consensus 150 ~ll~lla~ll~~~a~~viND~~ 171 (277)
.+++-++....-+..+++++|.
T Consensus 30 i~~~Gla~~vA~a~Sma~GeYv 51 (169)
T TIGR00267 30 IILAGLGGGVANGMSNAFGAFT 51 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666777777776
No 113
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.39 E-value=3e+02 Score=22.50 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=23.9
Q ss_pred ccccCCCCCcccCCccChHHHHHHHHHHHHHHHHHH
Q 037091 175 IDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMG 210 (277)
Q Consensus 175 iDrinkp~RPL~SG~IS~r~A~~l~~~ll~lgliLa 210 (277)
-||+|. -|.+=+-+|..|....+.+..+++++++
T Consensus 5 p~RLN~--ePvV~rGlT~~El~~~~~~~~~~gl~~g 38 (111)
T TIGR03750 5 PDRLNR--EPVVFRGLTADELGVAAGVGLAAGLVLG 38 (111)
T ss_pred chhhcC--CCceecccCHHHHHHHHHHHHHHHHHHH
Confidence 377774 4555667888998888877777766554
No 114
>COG2431 Predicted membrane protein [Function unknown]
Probab=26.39 E-value=2e+02 Score=27.49 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCC
Q 037091 197 AITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSI 234 (277)
Q Consensus 197 ~l~~~ll~lgliLa~~l~~~~lll~ll~~~ll~~~YS~ 234 (277)
...+...+.|.+.++.++ +++-.++..+...|| ||.
T Consensus 171 i~ilssliGG~iaa~~l~-lpl~~~lAmasG~GW-YSl 206 (297)
T COG2431 171 ITLLSSLIGGLIAAFLLD-LPLTTGLAMASGFGW-YSL 206 (297)
T ss_pred HHHHHHHHHHHHHHHHHh-ccHHHHHHHHhccch-hhh
Confidence 333333444455555554 444444444555666 773
No 115
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=25.96 E-value=1.4e+02 Score=29.31 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccC---CCCCcccCCccCh
Q 037091 151 FKCMVPAIMMNNYANAINQLADVHIDKVN---KPHLPLACGDFSM 192 (277)
Q Consensus 151 ll~lla~ll~~~a~~viND~~D~eiDrin---kp~RPL~SG~IS~ 192 (277)
+..+.++..+......+|++.+...|+.. .-.||.|.+.=+.
T Consensus 328 v~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~I 372 (452)
T PF04547_consen 328 VTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSI 372 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccch
Confidence 44455566666677889999999999863 4679998865554
No 116
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=24.96 E-value=3.9e+02 Score=24.75 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=29.0
Q ss_pred HhhccccccccccCCCC--------Cccc--CCccChHHHHHHHHHHHHHHHHHH
Q 037091 166 AINQLADVHIDKVNKPH--------LPLA--CGDFSMGEGLAITIASPLMAVAMG 210 (277)
Q Consensus 166 viND~~D~eiDrinkp~--------RPL~--SG~IS~r~A~~l~~~ll~lgliLa 210 (277)
-+||-.+.|.|-+++++ +-+. .=++|-+||..+..+..+.....+
T Consensus 168 ~LNnrlE~eV~~i~~~~~~~l~rHy~~L~~lrI~lSD~EA~~y~~i~i~~~~l~~ 222 (237)
T PF13748_consen 168 RLNNRLEKEVDIIERRKPASLRRHYRRLSRLRIRLSDREALGYLLIGIVAALLFV 222 (237)
T ss_pred HHhHHHHHHccHhhcCChHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHH
Confidence 67888888888775422 1222 236789999988877666554443
No 117
>PF10797 YhfT: Protein of unknown function; InterPro: IPR019733 This entry contains predicted inner membrane proteins, whose function is unknown.
Probab=24.59 E-value=2.5e+02 Score=28.09 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCCCCCccc----CCccChHHHHHHHHHHH
Q 037091 150 AFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLA----CGDFSMGEGLAITIASP 203 (277)
Q Consensus 150 ~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~----SG~IS~r~A~~l~~~ll 203 (277)
++++.++.++.|-+.-++||= + ||+. .||++.+|.-..++.+.
T Consensus 7 a~lga~~a~lan~giAVFnDG-------l----RPi~Pe~lEGrm~R~elaatsFalS 53 (420)
T PF10797_consen 7 ALLGALAALLANRGIAVFNDG-------L----RPIMPEYLEGRMTRKELAATSFALS 53 (420)
T ss_pred hHHHHHHHHHhcCCchhhcCC-------c----ccCCHHHhcCcccHHHHHHHHHHHh
Confidence 345566677777777777763 2 4443 79999999765555443
No 118
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=23.11 E-value=1.7e+02 Score=30.09 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccCCCCCcccCCccChHHHHHHHHHHHHHHHHHHH
Q 037091 152 KCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGI 211 (277)
Q Consensus 152 l~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~SG~IS~r~A~~l~~~ll~lgliLa~ 211 (277)
+...+.+++..+.-.-+|+++.-+|+--..+++ .+-+++..++..+++.+++.
T Consensus 357 LstaaGL~l~iasavsHDiY~~vik~~ase~~~-------v~vaRi~~v~~~vva~~lgi 409 (529)
T COG4147 357 LSTAAGLLLVIASAVSHDLYAMVIKKGATEKKE-------VRVARIAVVILGVVAILLGI 409 (529)
T ss_pred HHHHhhHHHHHHHHHHhHHHHHHhCCCCCccce-------ehhHHHHHHHHHHHHHHhee
Confidence 444556667777778889988877754222232 24455555666666665543
No 119
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.10 E-value=2.8e+02 Score=22.28 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=32.4
Q ss_pred cCCccChHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHhhhcCCCccCcccccc
Q 037091 186 ACGDFSMGEGLAITIASPLMAVAMGIMLRSPP-LVIGFIIWCIVGGAYSIDLPPLLRWKG 244 (277)
Q Consensus 186 ~SG~IS~r~A~~l~~~ll~lgliLa~~l~~~~-lll~ll~~~ll~~~YS~~lp~P~rlKr 244 (277)
++-+..++.-..+..+..++|++++++..... .+..+.+++++..+-+ +| |.++=+
T Consensus 19 ~gQkkaEr~~q~ilti~aiVg~i~Gf~~Qqls~tvy~vg~~~v~t~li~--LP-pwP~y~ 75 (101)
T KOG4112|consen 19 PGQKKAERFQQLILTIGAIVGFIYGFAQQQLSVTVYIVGAGFVFTLLIT--LP-PWPWYR 75 (101)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CC-Cchhhh
Confidence 34556666666777778888999988754322 1222223555555555 36 665443
No 120
>KOG3146 consensus Dolichyl pyrophosphate phosphatase and related acid phosphatases [Lipid transport and metabolism]
Probab=23.00 E-value=6e+02 Score=23.39 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=24.8
Q ss_pred HHHHhhhcCCCccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037091 225 WCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKI 272 (277)
Q Consensus 225 ~~ll~~~YS~~lp~P~rlKr~~ll~~l~i~~~~g~lv~~g~~~~~~~~ 272 (277)
++...+.|| .+.+|.+. ++-..+++.-|-++..-.|.-.+.-
T Consensus 138 aLs~~v~~s-----RVyl~yHt-~sQVv~G~ivG~l~g~~Wf~~v~sl 179 (228)
T KOG3146|consen 138 ALSFYVCYS-----RVYLKYHT-LSQVVVGAIVGGLVGILWFYLVNSL 179 (228)
T ss_pred HHHHHHHHH-----HHHHHhcc-HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444455677 56677776 5555556655556665555555543
No 121
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=22.38 E-value=1.3e+02 Score=23.57 Aligned_cols=32 Identities=9% Similarity=-0.019 Sum_probs=21.1
Q ss_pred cccCCCCCcccCCccChHHHHHHHHHHHHHHHHHHH
Q 037091 176 DKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGI 211 (277)
Q Consensus 176 Drinkp~RPL~SG~IS~r~A~~l~~~ll~lgliLa~ 211 (277)
|++|+|.|-+ -.+..|+ ..+...+++|+.++.
T Consensus 7 ~~Ld~~~~i~---g~t~DE~-i~~~~~~~~Gi~~~~ 38 (95)
T TIGR02762 7 KYLDEQPRIL---GLPLDEF-LPGATLFGIGILSGK 38 (95)
T ss_pred CccCCCCeEE---EeeHHHH-HHHHHHHHHHHHHhh
Confidence 5667776665 6788888 555666666666654
No 122
>PRK13592 ubiA prenyltransferase; Provisional
Probab=21.50 E-value=7.2e+02 Score=23.78 Aligned_cols=53 Identities=6% Similarity=0.004 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCCCcccCCccChHHHHHHHHHHHHHHHHHH
Q 037091 154 MVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMG 210 (277)
Q Consensus 154 lla~ll~~~a~~viND~~D~eiDrinkp~RPL~SG~IS~r~A~~l~~~ll~lgliLa 210 (277)
.+.+++...+-.+.-|+.| |.|+.+-+.-| ...-.+.+..++.++.+++++++
T Consensus 181 ~l~afl~~l~rEI~KdieD-~gd~~~~~Tlp---i~~G~kkA~~ia~~l~ii~v~~s 233 (299)
T PRK13592 181 AFTMYFPSLIWEVCRKIRA-PKDETEYVTYS---KLFGYKKATRFIEVVTLLDILTN 233 (299)
T ss_pred HHHHHHHHHHHHHHHhhcC-CccccCCeeec---hhccchhHHHHHHHHHHHHHHHh
Confidence 3456667777889999999 77765433333 55666777777777776666553
No 123
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=20.94 E-value=7e+02 Score=24.45 Aligned_cols=84 Identities=11% Similarity=0.109 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCCCCCcccCCccChHHHH-HH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 037091 150 AFKCMVPAIMMNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGL-AI-TIASPLMAVAMGIMLRSPPLVIGFIIWCI 227 (277)
Q Consensus 150 ~ll~lla~ll~~~a~~viND~~D~eiDrinkp~RPL~SG~IS~r~A~-~l-~~~ll~lgliLa~~l~~~~lll~ll~~~l 227 (277)
+..+++..++........+.+.-++.|...+++.+...-.-+.++++ .+ ..+..+.++..+.+.+.....++.+..++
T Consensus 171 f~agiiPgll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~iil~~i~~g~~t~teaa~~~~~~~l~ 250 (416)
T PF06808_consen 171 FIAGIIPGLLLALGLMIYVYFIARKPGLPPEPRASLKERWRAFKRAIPALLIPVIILGGIYLGIFTPTEAAAVAVVYALV 250 (416)
T ss_pred HHHHHHHHHHHHHHHHHhHhheeeccccCccccchHHHHHHHHHhcchHHHHHHHHHHHhhhcccchhhhhhhhHHHHHH
Confidence 34445555666666666776665532221111111111111122222 22 22233334555666666666666665555
Q ss_pred Hhhh-cC
Q 037091 228 VGGA-YS 233 (277)
Q Consensus 228 l~~~-YS 233 (277)
++.. |.
T Consensus 251 i~~~~~~ 257 (416)
T PF06808_consen 251 IGLFVYR 257 (416)
T ss_pred HHHhhhc
Confidence 6665 54
No 124
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=20.55 E-value=3.6e+02 Score=22.36 Aligned_cols=24 Identities=8% Similarity=-0.022 Sum_probs=18.3
Q ss_pred CCccChHHHHHHHHHHHHHHHHHH
Q 037091 187 CGDFSMGEGLAITIASPLMAVAMG 210 (277)
Q Consensus 187 SG~IS~r~A~~l~~~ll~lgliLa 210 (277)
...+|+++...++.++.++.++.+
T Consensus 4 nrSLs~~g~~~~~~~~~~~~~~~a 27 (140)
T PF10003_consen 4 NRSLSPRGFLIFIAILAAVSLIIA 27 (140)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 347899999988888887776554
No 125
>PRK09979 putative rho operon leader peptide; Provisional
Probab=20.04 E-value=40 Score=21.24 Aligned_cols=14 Identities=43% Similarity=0.895 Sum_probs=12.8
Q ss_pred ccCCCccccccccc
Q 037091 5 INPRSSFSLKYHPL 18 (277)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (277)
.||.-.||+.|+|.
T Consensus 11 lnpscrfssayspv 24 (33)
T PRK09979 11 LNPSCRFSSAYSPV 24 (33)
T ss_pred CCcccccccccChH
Confidence 69999999999987
Done!