Query 037091
Match_columns 277
No_of_seqs 132 out of 1257
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:21:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kdc_A Diacylglycerol kinase; 56.3 64 0.0022 25.5 8.5 33 155-187 59-91 (121)
2 3dh4_A Sodium/glucose cotransp 15.8 7E+02 0.024 23.6 9.9 45 160-211 342-386 (530)
3 3arc_J Photosystem II reaction 10.7 2.5E+02 0.0084 18.1 3.1 21 244-267 7-29 (40)
4 1r9i_A MU-conotoxin PIIIA; cys 5.9 2.1E+02 0.007 16.6 1.0 12 42-53 3-14 (26)
5 1co4_A AMT1, protein (activato 5.8 2.1E+02 0.0072 18.6 1.1 16 171-186 26-41 (42)
6 2jve_A PROD1; LY-6, three-fing 5.2 1.8E+02 0.0062 21.1 0.5 37 12-55 49-85 (91)
7 2xq2_A Sodium/glucose cotransp 4.7 9.8E+02 0.034 22.9 5.7 13 160-172 371-383 (593)
8 2nx7_A Nematocyst outer WALL a 4.2 1.7E+02 0.0057 17.0 -0.2 8 17-24 6-13 (28)
9 2yrb_A Protein fantom; beta sa 4.2 3.4E+02 0.012 22.3 1.6 31 3-38 62-92 (156)
10 1jb0_X Photosystem I subunit P 3.9 6E+02 0.02 15.7 2.2 10 260-269 24-33 (35)
No 1
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=56.33 E-value=64 Score=25.48 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCCCcccC
Q 037091 155 VPAIMMNNYANAINQLADVHIDKVNKPHLPLAC 187 (277)
Q Consensus 155 la~ll~~~a~~viND~~D~eiDrinkp~RPL~S 187 (277)
+.++.+......+|--.+.-.|++.+.+.|++.
T Consensus 59 i~~i~lVl~~EllNTAIE~vvD~v~~e~h~lak 91 (121)
T 2kdc_A 59 ISSVMLVMIVEILNSAIEAVVDRIGSEYHELSG 91 (121)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTTCCCCSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccCHHHH
Confidence 344556667888999888889988877888754
No 2
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=15.85 E-value=7e+02 Score=23.57 Aligned_cols=45 Identities=9% Similarity=0.011 Sum_probs=21.0
Q ss_pred HHHHHHHhhccccccccccCCCCCcccCCccChHHHHHHHHHHHHHHHHHHH
Q 037091 160 MNNYANAINQLADVHIDKVNKPHLPLACGDFSMGEGLAITIASPLMAVAMGI 211 (277)
Q Consensus 160 ~~~a~~viND~~D~eiDrinkp~RPL~SG~IS~r~A~~l~~~ll~lgliLa~ 211 (277)
...+....||++..-+ ||=++.+=..+-++...++..+++++++.
T Consensus 342 ~s~st~~~~Diy~~~~-------~~~~s~~~~~~v~R~~~v~~~i~a~~~a~ 386 (530)
T 3dh4_A 342 NSTATIFTMDIYKEYI-------SPDSGDHKLVNVGRTAAVVALIIACLIAP 386 (530)
T ss_dssp HHHHHHHHHHTCCCCC-------CSCSCSSHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHhHHHHHhHHHHHhc-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677764321 22122222234445555555555555553
No 3
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=10.75 E-value=2.5e+02 Score=18.06 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=12.3
Q ss_pred chhhHHHHHHHHHHHHHHH--HHHHH
Q 037091 244 GNPLMAAVTIISMNGLLLL--FPFFI 267 (277)
Q Consensus 244 r~~ll~~l~i~~~~g~lv~--~g~~~ 267 (277)
|.|+| .|+++.|+.|. +|.|+
T Consensus 7 RiPLW---lvgtv~G~~vi~~~giFf 29 (40)
T 3arc_J 7 RIPLW---IVATVAGMGVIVIVGLFF 29 (40)
T ss_dssp SSCHH---HHHHHHHHHHHHHHHHHH
T ss_pred cccEE---eeeeehhhhhhheeeEEE
Confidence 56666 57777775543 45443
No 4
>1r9i_A MU-conotoxin PIIIA; cysteine knot; HET: PCA HYP CY3; NMR {Conus purpurascens} SCOP: j.30.1.1
Probab=5.85 E-value=2.1e+02 Score=16.64 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=7.1
Q ss_pred cccccccccccc
Q 037091 42 ESKKYSVRCSSE 53 (277)
Q Consensus 42 ~~~~~~~~~~~~ 53 (277)
-|+++|-.|+++
T Consensus 3 ~CC~~Pk~CksR 14 (26)
T 1r9i_A 3 LCCGFPKSCRSR 14 (26)
T ss_dssp TTTTSTTGGGST
T ss_pred cccCCCCccccc
Confidence 355666666655
No 5
>1co4_A AMT1, protein (activator of metallothionein 1); metal regulation, translation/regulation protein complex; NMR {Synthetic} SCOP: g.47.1.1
Probab=5.78 E-value=2.1e+02 Score=18.58 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=11.1
Q ss_pred ccccccccCCCCCccc
Q 037091 171 ADVHIDKVNKPHLPLA 186 (277)
Q Consensus 171 ~D~eiDrinkp~RPL~ 186 (277)
.|+....++++.||..
T Consensus 26 ~drpL~~ir~kGRP~t 41 (42)
T 1co4_A 26 NDRPLKILKPRGRPPT 41 (42)
T ss_dssp CSSCEEEECSCCCCSC
T ss_pred CCCcceecCCCCCCCC
Confidence 3566667778888864
No 6
>2jve_A PROD1; LY-6, three-finger snake toxin, UPAR, CD59, LIMB regeneration; NMR {Notophthalmus viridescens}
Probab=5.17 E-value=1.8e+02 Score=21.07 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=21.6
Q ss_pred ccccccccCCCCcchhhhHHHhhhcccccccccccccccccccc
Q 037091 12 SLKYHPLQHAGSVKTFQTRVKHINGLANKSESKKYSVRCSSESS 55 (277)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (277)
.+-|+..|.--.| | |--..+.+-+--.||.+|+-|.+
T Consensus 49 qlpyseiqecktv---q----qcaevleevtaigypakcccedl 85 (91)
T 2jve_A 49 QLPYSEIQECKTV---Q----QCAEVLEEVTAIGYPAKCCCEDL 85 (91)
T ss_dssp ECSSSEEEEEECH---H----HHHHHHHHHHTTTCCEEEECSTT
T ss_pred ECCHHHHHHhHHH---H----HHHHHHHHHHHcCCchhhhHHHH
Confidence 4567777654333 3 33333444455568999998863
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=4.73 E-value=9.8e+02 Score=22.89 Aligned_cols=13 Identities=0% Similarity=-0.209 Sum_probs=7.3
Q ss_pred HHHHHHHhhcccc
Q 037091 160 MNNYANAINQLAD 172 (277)
Q Consensus 160 ~~~a~~viND~~D 172 (277)
...+....||++.
T Consensus 371 ~a~st~~~~Diy~ 383 (593)
T 2xq2_A 371 NSTATIFTMDIYK 383 (593)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445556677754
No 8
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=4.20 E-value=1.7e+02 Score=17.00 Aligned_cols=8 Identities=38% Similarity=0.596 Sum_probs=5.8
Q ss_pred cccCCCCc
Q 037091 17 PLQHAGSV 24 (277)
Q Consensus 17 ~~~~~~~~ 24 (277)
+||++|+-
T Consensus 6 slqqpgcs 13 (28)
T 2nx7_A 6 SLQQPGCS 13 (28)
T ss_dssp HHHSTTCC
T ss_pred cccCCCcc
Confidence 47888874
No 9
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=4.17 E-value=3.4e+02 Score=22.25 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=25.7
Q ss_pred ccccCCCccccccccccCCCCcchhhhHHHhhhccc
Q 037091 3 LQINPRSSFSLKYHPLQHAGSVKTFQTRVKHINGLA 38 (277)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (277)
-..||.++|++.|.+ .|+++=+...|.|.+.
T Consensus 62 ~G~~p~y~fts~Y~V-----~~d~~fl~yL~~~~l~ 92 (156)
T 2yrb_A 62 RGLHPEYNFTSQYLV-----HVNDLFLQYIQKNTIT 92 (156)
T ss_dssp ESSSCCCCEEEEEEE-----CCSHHHHHHHHHCCEE
T ss_pred cCCCCCcceEEEEEE-----EeCHHHHHHHhcCCEE
Confidence 357999999999998 4888888888887665
No 10
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=3.94 E-value=6e+02 Score=15.69 Aligned_cols=10 Identities=10% Similarity=0.464 Sum_probs=5.4
Q ss_pred HHHHHHHHHH
Q 037091 260 LLLFPFFIHF 269 (277)
Q Consensus 260 lv~~g~~~~~ 269 (277)
.+.-|+|+|+
T Consensus 24 flVAayYFhi 33 (35)
T 1jb0_X 24 FLVAAYYFAA 33 (35)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHhh
Confidence 3445666663
Done!