BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037092
(76 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
+ +EEDR+I + G+RW+ I LPGRTDN N++ N+ +KRK
Sbjct: 61 SWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHW-NSTIKRK 107
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 3 PWGFPDEEDRLICRLFAISGSR-WSVIGAHLPGRTDNETNNYYRN 46
PW EED+ + L G++ W++I HL GR + + N
Sbjct: 9 PW--TKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHN 51
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
+ +EEDR+I + G+RW+ I LPGRTDN N++ N+ ++RK
Sbjct: 81 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHW-NSTMRRK 127
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRN 46
PW +E+ R+I + RWS I HL GR + + N
Sbjct: 29 PW-TKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN 71
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
+ +EEDR+I + G+RW+ I LPGRTDN N++ N+ ++RK
Sbjct: 58 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRK 104
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 3 PWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRN 46
PW EED+ + +L G RWSVI HL GR + + N
Sbjct: 6 PW--TKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 48
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
+ +EEDR+I + G+RW+ I LPGRTDN N++ N+ ++RK
Sbjct: 58 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRK 104
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 3 PWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRN 46
PW EED+ + +L G RWSVI HL GR + + N
Sbjct: 6 PW--TKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 48
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
+ +EEDR+I + G+RW+ I LPGRTDN N++ N+ ++RK
Sbjct: 112 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRK 158
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 3 PWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRN 46
PW EED+ + +L G RWSVI HL GR + + N
Sbjct: 60 PW--TKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 102
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 6 FPDEEDRLICRLFAISGSR-WSVIGAHLPGRTDNETNNYYR 45
+ EED + +L +G+ W VI +LP RTD + + ++
Sbjct: 9 WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 49
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
+ +EEDR+I + G+RW+ I LPGRTDN N++ N+ ++RK
Sbjct: 5 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRK 51
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20
Structures
Length = 54
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52
+ +EEDR++ + G+RW+ I LPGRTDN N++ N+ ++RK
Sbjct: 7 SWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRK 53
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 9 EEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKR 51
EED I R + GS+WSVI +PGRTDN N + ++ KR
Sbjct: 60 EEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44
PW EED L+ + G +W++I PGRTD N +
Sbjct: 64 PWT--AEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 6 FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRN 46
F EED ++ R A GS W +I A P R + + ++N
Sbjct: 14 FTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKN 54
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 3 PWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRN 46
PW EED+ + +L G RWSVI HL GR + + N
Sbjct: 5 PW--TKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRN 46
PW +E+ RLI + RWSVI HL GR + + N
Sbjct: 5 PW-TKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 3 PWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRN 46
PW EED+ + L G RWSVI HL GR + + N
Sbjct: 5 PW--TKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In
Complex With Mre-1MRE-2r Dna
Length = 107
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44
PW EED L+ + +A G +W+ I L R+DN N +
Sbjct: 55 PWS--PEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 9 EEDRLICRLFAISGSR-WSVIGAHLPGRTDNETNNYYR 45
EED + +L +G+ W VI +LP RTD + + ++
Sbjct: 9 EEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 46
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 9 EEDRLICRLFAISGSR-WSVIGAHLPGRTDNETNNYYR 45
EED + +L +G+ W VI +LP RTD + + ++
Sbjct: 9 EEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,623,953
Number of Sequences: 62578
Number of extensions: 96749
Number of successful extensions: 242
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 25
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)