Query 037092
Match_columns 76
No_of_seqs 168 out of 1086
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 14:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dim_A Cell division cycle 5-l 99.9 1E-24 3.5E-29 122.5 6.1 62 1-63 7-69 (70)
2 2cu7_A KIAA1915 protein; nucle 99.9 5.9E-24 2E-28 120.0 5.8 61 1-63 7-67 (72)
3 1guu_A C-MYB, MYB proto-oncoge 99.9 1.4E-23 4.7E-28 111.7 6.1 50 1-51 1-51 (52)
4 1gvd_A MYB proto-oncogene prot 99.9 2.2E-23 7.4E-28 111.0 6.3 50 1-51 1-51 (52)
5 1gv2_A C-MYB, MYB proto-oncoge 99.9 3.1E-23 1.1E-27 123.7 6.2 74 1-75 2-76 (105)
6 2d9a_A B-MYB, MYB-related prot 99.9 3.1E-23 1.1E-27 113.3 5.3 52 1-53 6-58 (60)
7 2din_A Cell division cycle 5-l 99.9 8.2E-23 2.8E-27 113.5 5.8 56 1-58 7-62 (66)
8 3osg_A MYB21; transcription-DN 99.9 9.5E-23 3.3E-27 125.3 6.5 74 1-75 9-82 (126)
9 1h8a_C AMV V-MYB, MYB transfor 99.9 1.5E-22 5.1E-27 124.5 6.0 74 1-75 25-99 (128)
10 1w0t_A Telomeric repeat bindin 99.9 3.8E-22 1.3E-26 106.7 6.2 49 2-51 1-52 (53)
11 2k9n_A MYB24; R2R3 domain, DNA 99.9 2.7E-22 9.2E-27 120.3 5.7 72 3-75 1-73 (107)
12 1ity_A TRF1; helix-turn-helix, 99.9 4.5E-22 1.5E-26 111.4 6.2 56 2-58 9-67 (69)
13 2llk_A Cyclin-D-binding MYB-li 99.9 1.7E-22 5.8E-27 114.7 4.3 45 1-47 21-65 (73)
14 3zqc_A MYB3; transcription-DNA 99.9 6.8E-22 2.3E-26 122.1 5.8 72 3-75 2-74 (131)
15 1x41_A Transcriptional adaptor 99.9 1E-21 3.6E-26 107.4 5.5 50 1-51 6-56 (60)
16 1h89_C C-MYB, MYB proto-oncoge 99.8 1.1E-21 3.9E-26 124.2 6.4 74 1-75 56-130 (159)
17 3zqc_A MYB3; transcription-DNA 99.8 1.7E-21 5.9E-26 120.3 6.6 60 1-61 52-111 (131)
18 1gv2_A C-MYB, MYB proto-oncoge 99.8 1.9E-21 6.3E-26 115.9 6.4 52 1-53 54-105 (105)
19 2k9n_A MYB24; R2R3 domain, DNA 99.8 3.3E-21 1.1E-25 115.5 5.8 54 1-55 51-104 (107)
20 2yum_A ZZZ3 protein, zinc fing 99.8 3.1E-21 1.1E-25 109.4 5.2 59 1-60 6-70 (75)
21 3sjm_A Telomeric repeat-bindin 99.8 5E-21 1.7E-25 106.1 5.6 50 2-52 10-62 (64)
22 1h8a_C AMV V-MYB, MYB transfor 99.8 9E-21 3.1E-25 116.5 6.7 52 1-53 77-128 (128)
23 2elk_A SPCC24B10.08C protein; 99.8 1.3E-20 4.3E-25 102.5 5.5 47 1-48 7-55 (58)
24 2ltp_A Nuclear receptor corepr 99.7 5.3E-22 1.8E-26 116.2 0.0 53 1-54 14-66 (89)
25 3osg_A MYB21; transcription-DN 99.8 4.9E-20 1.7E-24 113.2 6.4 51 1-52 60-110 (126)
26 1h89_C C-MYB, MYB proto-oncoge 99.8 9.1E-20 3.1E-24 115.4 6.4 52 1-53 108-159 (159)
27 2juh_A Telomere binding protei 99.8 1.3E-19 4.3E-24 111.3 4.7 74 1-75 15-99 (121)
28 1ign_A Protein (RAP1); RAP1,ye 99.8 1.3E-19 4.5E-24 121.6 5.1 53 1-54 6-64 (246)
29 2roh_A RTBP1, telomere binding 99.8 5.3E-19 1.8E-23 108.7 6.5 74 2-76 30-114 (122)
30 2ckx_A NGTRF1, telomere bindin 99.8 1.7E-18 5.9E-23 100.3 6.6 46 4-50 1-51 (83)
31 2cqr_A RSGI RUH-043, DNAJ homo 99.8 1E-18 3.6E-23 99.0 5.3 47 1-48 16-66 (73)
32 2yus_A SWI/SNF-related matrix- 99.7 2.6E-18 8.9E-23 98.6 5.0 46 2-48 17-62 (79)
33 2aje_A Telomere repeat-binding 99.7 1E-17 3.4E-22 100.7 7.2 49 1-50 11-64 (105)
34 1x58_A Hypothetical protein 49 99.7 1.8E-17 6.1E-22 91.1 6.2 48 2-50 7-57 (62)
35 2cjj_A Radialis; plant develop 99.7 1.4E-16 4.9E-21 93.8 5.5 48 3-51 8-59 (93)
36 2eqr_A N-COR1, N-COR, nuclear 99.6 8.4E-15 2.9E-19 80.1 5.9 42 3-44 12-53 (61)
37 2cqq_A RSGI RUH-037, DNAJ homo 99.4 3.1E-13 1.1E-17 76.2 5.0 48 2-51 7-58 (72)
38 3hm5_A DNA methyltransferase 1 99.4 1.5E-12 5.2E-17 76.5 6.5 56 1-57 28-88 (93)
39 2iw5_B Protein corest, REST co 99.4 6.1E-13 2.1E-17 88.8 5.3 48 3-51 133-180 (235)
40 1fex_A TRF2-interacting telome 99.2 5.7E-11 2E-15 64.5 5.1 46 3-49 2-57 (59)
41 1wgx_A KIAA1903 protein; MYB D 99.1 1.5E-10 5.1E-15 65.3 5.0 45 3-48 8-56 (73)
42 1ug2_A 2610100B20RIK gene prod 98.8 1.1E-08 3.8E-13 59.7 5.9 45 5-50 35-82 (95)
43 4eef_G F-HB80.4, designed hema 98.8 1.1E-09 3.9E-14 61.6 1.7 41 4-44 21-65 (74)
44 2yqk_A Arginine-glutamic acid 98.8 2.3E-08 8E-13 54.6 6.2 43 2-44 8-51 (63)
45 2lr8_A CAsp8-associated protei 98.2 9.4E-10 3.2E-14 61.1 0.0 42 5-48 16-60 (70)
46 4iej_A DNA methyltransferase 1 98.7 6E-08 2E-12 56.8 6.6 55 1-56 28-87 (93)
47 4a69_C Nuclear receptor corepr 98.6 6.7E-08 2.3E-12 56.6 5.8 41 4-44 44-84 (94)
48 2crg_A Metastasis associated p 98.6 1.5E-07 5.3E-12 52.3 5.7 42 3-44 8-50 (70)
49 2xag_B REST corepressor 1; ami 98.6 7.4E-08 2.5E-12 70.0 5.5 42 3-44 380-421 (482)
50 1ign_A Protein (RAP1); RAP1,ye 98.2 2.9E-06 9.8E-11 57.1 5.5 27 24-51 173-199 (246)
51 2ebi_A DNA binding protein GT- 98.0 5.4E-06 1.8E-10 47.2 3.1 51 2-54 3-67 (86)
52 1ofc_X ISWI protein; nuclear p 96.9 0.0024 8.3E-08 44.1 6.0 45 4-49 111-156 (304)
53 2juh_A Telomere binding protei 96.7 0.00053 1.8E-08 41.7 1.6 27 1-27 76-103 (121)
54 2xag_B REST corepressor 1; ami 96.7 0.00028 9.5E-09 51.4 0.0 41 4-44 190-230 (482)
55 1irz_A ARR10-B; helix-turn-hel 96.7 0.0056 1.9E-07 33.3 5.2 42 3-44 7-53 (64)
56 1ofc_X ISWI protein; nuclear p 96.6 0.0027 9.2E-08 43.8 4.5 47 3-50 212-274 (304)
57 4b4c_A Chromodomain-helicase-D 96.6 0.002 6.8E-08 41.4 3.5 26 5-30 136-162 (211)
58 2xb0_X Chromo domain-containin 95.9 0.0064 2.2E-07 41.3 3.5 27 4-30 169-196 (270)
59 2roh_A RTBP1, telomere binding 95.5 0.0079 2.7E-07 36.5 2.5 24 1-24 90-114 (122)
60 2y9y_A Imitation switch protei 95.1 0.031 1E-06 39.6 4.7 47 3-50 228-290 (374)
61 4b4c_A Chromodomain-helicase-D 95.1 0.032 1.1E-06 35.7 4.5 46 3-49 7-57 (211)
62 2llk_A Cyclin-D-binding MYB-li 91.3 0.033 1.1E-06 30.8 -0.2 35 40-75 9-43 (73)
63 2xb0_X Chromo domain-containin 89.0 1.3 4.5E-05 29.9 6.1 42 3-44 3-49 (270)
64 2o8x_A Probable RNA polymerase 88.6 0.84 2.9E-05 23.3 4.0 35 9-44 18-52 (70)
65 1ku3_A Sigma factor SIGA; heli 85.8 1.3 4.4E-05 23.2 3.8 37 6-44 11-51 (73)
66 2y9y_A Imitation switch protei 83.4 3.2 0.00011 29.3 5.9 41 4-44 124-166 (374)
67 2p7v_B Sigma-70, RNA polymeras 82.9 1.5 5.3E-05 22.5 3.3 36 7-44 7-46 (68)
68 3hug_A RNA polymerase sigma fa 82.3 2.4 8.2E-05 23.1 4.1 35 9-44 40-74 (92)
69 2rq5_A Protein jumonji; develo 80.2 5.1 0.00018 23.8 5.2 55 13-71 46-113 (121)
70 1or7_A Sigma-24, RNA polymeras 79.3 4.4 0.00015 24.3 4.9 35 9-44 143-177 (194)
71 2li6_A SWI/SNF chromatin-remod 79.2 1.8 6.2E-05 25.3 3.0 38 13-51 53-98 (116)
72 2lm1_A Lysine-specific demethy 78.1 4.9 0.00017 22.9 4.6 38 13-51 48-97 (107)
73 2q1z_A RPOE, ECF SIGE; ECF sig 78.0 2.6 8.9E-05 25.1 3.6 35 9-44 138-172 (184)
74 2jrz_A Histone demethylase jar 76.6 5.2 0.00018 23.3 4.5 38 13-51 44-93 (117)
75 2yqf_A Ankyrin-1; death domain 76.4 6.4 0.00022 22.6 4.8 35 7-42 14-48 (111)
76 2of5_H Leucine-rich repeat and 74.5 4.3 0.00015 23.7 3.7 31 11-42 13-43 (118)
77 1xsv_A Hypothetical UPF0122 pr 73.7 8.4 0.00029 22.0 4.8 34 10-44 29-62 (113)
78 2cxy_A BAF250B subunit, HBAF25 72.7 7.4 0.00025 22.9 4.5 38 13-51 55-104 (125)
79 2o71_A Death domain-containing 72.4 6.1 0.00021 23.1 4.0 30 12-42 25-54 (115)
80 2eqy_A RBP2 like, jumonji, at 72.2 7.7 0.00026 22.8 4.5 38 13-51 46-95 (122)
81 2of5_A Death domain-containing 71.9 5.7 0.00019 23.2 3.8 30 12-42 25-54 (114)
82 1tty_A Sigma-A, RNA polymerase 71.2 6.7 0.00023 21.1 3.8 35 9-44 21-59 (87)
83 2jxj_A Histone demethylase jar 70.6 4.3 0.00015 22.7 3.0 37 14-51 41-89 (96)
84 1rp3_A RNA polymerase sigma fa 70.2 9.4 0.00032 23.4 4.8 35 9-44 190-224 (239)
85 3mzy_A RNA polymerase sigma-H 69.9 7.4 0.00025 22.3 4.1 35 7-44 111-145 (164)
86 1x3u_A Transcriptional regulat 68.3 10 0.00036 19.5 4.4 36 6-44 17-52 (79)
87 1wxp_A THO complex subunit 1; 68.3 10 0.00034 21.7 4.3 31 11-42 18-48 (110)
88 2kk0_A AT-rich interactive dom 65.4 20 0.00067 21.6 5.9 39 13-52 68-119 (145)
89 3i4p_A Transcriptional regulat 65.4 8.3 0.00029 23.1 3.7 36 8-44 2-38 (162)
90 1c20_A DEAD ringer protein; DN 64.9 14 0.00047 21.7 4.6 38 13-51 56-106 (128)
91 3ulq_B Transcriptional regulat 64.9 15 0.00052 20.1 4.6 37 5-44 29-65 (90)
92 1kkx_A Transcription regulator 64.0 5.7 0.00019 23.5 2.7 38 14-52 53-98 (123)
93 3c57_A Two component transcrip 63.7 13 0.00044 20.3 4.1 46 5-55 27-72 (95)
94 1s7o_A Hypothetical UPF0122 pr 63.6 16 0.00055 20.9 4.6 37 6-44 23-59 (113)
95 1fse_A GERE; helix-turn-helix 61.2 14 0.00047 18.6 3.7 37 5-44 11-47 (74)
96 1je8_A Nitrate/nitrite respons 60.7 14 0.00046 19.7 3.7 37 5-44 21-57 (82)
97 1tc3_C Protein (TC3 transposas 60.5 11 0.00037 17.0 5.0 39 4-44 4-42 (51)
98 1ig6_A MRF-2, modulator recogn 58.5 7.6 0.00026 22.1 2.5 38 13-51 37-87 (107)
99 3cz6_A DNA-binding protein RAP 56.3 6.4 0.00022 24.9 2.0 13 3-15 114-126 (168)
100 1fad_A Protein (FADD protein); 54.8 9.7 0.00033 21.1 2.5 31 11-42 14-44 (99)
101 2e1c_A Putative HTH-type trans 54.3 26 0.00088 21.3 4.6 36 8-44 26-62 (171)
102 2lfw_A PHYR sigma-like domain; 54.0 6 0.0002 23.4 1.6 35 9-44 96-130 (157)
103 2dbb_A Putative HTH-type trans 52.1 31 0.0011 20.0 4.6 36 8-44 8-44 (151)
104 2rnj_A Response regulator prot 51.6 17 0.00057 19.5 3.1 36 6-44 30-65 (91)
105 3h8k_B Autocrine motility fact 49.2 12 0.0004 16.8 1.8 10 6-15 1-10 (28)
106 1k78_A Paired box protein PAX5 45.1 43 0.0015 19.2 5.2 39 4-44 31-69 (149)
107 1p4w_A RCSB; solution structur 43.6 41 0.0014 18.6 4.7 38 4-44 33-70 (99)
108 2cyy_A Putative HTH-type trans 43.2 37 0.0012 19.8 3.9 35 9-44 7-42 (151)
109 2jvw_A Uncharacterized protein 42.8 22 0.00076 20.1 2.7 21 11-33 18-38 (88)
110 2jpc_A SSRB; DNA binding prote 41.7 31 0.0011 16.6 3.8 32 11-44 3-34 (61)
111 2bl8_A Enterocine A immunity p 39.9 23 0.00078 20.6 2.5 19 2-20 65-83 (103)
112 1ngr_A P75 low affinity neurot 38.9 21 0.0007 19.6 2.1 29 8-42 12-40 (85)
113 1l0o_C Sigma factor; bergerat 38.7 6.5 0.00022 24.1 0.0 32 12-44 204-235 (243)
114 2ba3_A NIKA; dimer, bacterial 38.5 24 0.00081 17.1 2.2 21 6-26 22-42 (51)
115 2p5v_A Transcriptional regulat 37.9 61 0.0021 19.0 4.6 36 8-44 9-45 (162)
116 3t72_q RNA polymerase sigma fa 37.9 53 0.0018 18.3 4.2 35 9-44 22-60 (99)
117 1dw9_A Cyanate lyase; cyanate 37.7 43 0.0015 20.7 3.7 32 12-44 16-47 (156)
118 1u78_A TC3 transposase, transp 37.4 54 0.0019 18.2 5.2 39 4-44 5-43 (141)
119 3ezq_B Protein FADD; apoptosis 37.4 36 0.0012 19.9 3.2 28 14-42 9-36 (122)
120 1pdn_C Protein (PRD paired); p 37.0 51 0.0017 17.8 4.7 37 5-43 17-53 (128)
121 3clo_A Transcriptional regulat 36.8 50 0.0017 21.0 4.1 37 5-44 197-233 (258)
122 2ib1_A Death domain containing 36.8 9.1 0.00031 21.4 0.4 34 8-43 5-38 (91)
123 3e7l_A Transcriptional regulat 36.4 43 0.0015 16.8 4.0 31 9-40 19-49 (63)
124 3eyi_A Z-DNA-binding protein 1 35.4 32 0.0011 18.7 2.5 40 5-44 6-46 (72)
125 2k27_A Paired box protein PAX- 34.7 63 0.0022 18.8 4.1 38 5-44 25-62 (159)
126 2pn6_A ST1022, 150AA long hypo 34.2 55 0.0019 18.8 3.7 35 9-44 3-38 (150)
127 2ia0_A Putative HTH-type trans 34.0 77 0.0026 19.0 4.6 36 8-44 16-52 (171)
128 2gf5_A FADD protein; death dom 33.8 49 0.0017 20.5 3.6 32 10-42 97-128 (191)
129 2cg4_A Regulatory protein ASNC 33.3 62 0.0021 18.7 3.8 35 9-44 8-43 (152)
130 2h5n_A Hypothetical protein PG 31.9 38 0.0013 19.8 2.7 19 4-22 99-117 (133)
131 2guk_A Hypothetical protein PG 31.8 21 0.00071 21.3 1.4 11 5-15 89-99 (120)
132 1qgp_A Protein (double strande 31.7 50 0.0017 17.4 3.0 37 7-44 12-52 (77)
133 4dth_A VGRG protein; alpha-bet 31.5 39 0.0013 23.4 2.9 30 15-44 239-275 (396)
134 4d8o_A Ankyrin-2; ZU5, UPA, de 30.9 41 0.0014 25.1 3.1 31 11-42 498-528 (581)
135 1ntc_A Protein (nitrogen regul 30.8 67 0.0023 17.3 4.5 33 9-42 51-83 (91)
136 1hlv_A CENP-B, major centromer 30.3 75 0.0025 17.7 4.8 42 2-44 4-46 (131)
137 1i1g_A Transcriptional regulat 27.0 90 0.0031 17.5 4.1 34 10-44 5-39 (141)
138 1vz0_A PARB, chromosome partit 25.9 1.3E+02 0.0045 19.1 4.8 41 3-44 115-155 (230)
139 2ou3_A Tellurite resistance pr 25.8 62 0.0021 19.3 2.9 21 4-24 109-129 (161)
140 2jxu_A TERB, KP-TERB; tellurit 23.2 48 0.0016 19.4 2.0 19 4-22 125-143 (153)
141 3l46_A Protein ECT2; alternati 23.0 74 0.0025 18.2 2.8 23 5-27 31-53 (112)
142 1umq_A Photosynthetic apparatu 22.4 1E+02 0.0035 16.6 3.9 33 8-41 40-72 (81)
143 2cfx_A HTH-type transcriptiona 22.4 1.2E+02 0.004 17.3 4.6 35 9-44 5-40 (144)
144 2v79_A DNA replication protein 21.2 1.3E+02 0.0046 17.5 4.3 45 7-53 31-80 (135)
145 4glq_A Methyl-accepting chemot 21.1 58 0.002 19.4 2.1 19 4-22 131-149 (171)
146 1v6z_A Hypothetical protein TT 20.4 62 0.0021 20.7 2.2 13 4-16 184-196 (228)
147 1jko_C HIN recombinase, DNA-in 20.3 74 0.0025 14.2 4.9 38 5-44 5-42 (52)
No 1
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=1e-24 Score=122.48 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=59.5
Q ss_pred CCCCCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCc
Q 037092 1 MKPWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMK 63 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~ 63 (76)
+++|+||+|||++|+++|.+|| ++|+.||..|||||+.||++|| ..+|.+.+.+.+|++.++
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw-~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARW-YEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHH-HHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHH-HHHcCCcccCCCCChHhc
Confidence 5789999999999999999999 7999999999999999999999 999999999999999875
No 2
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.90 E-value=5.9e-24 Score=120.04 Aligned_cols=61 Identities=25% Similarity=0.262 Sum_probs=55.1
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCc
Q 037092 1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMK 63 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~ 63 (76)
+++++||+|||++|+++|.+||++|+.||.+|||||++||++|| +.++++.+.. +.++..+
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~-~~~l~~~~~~-g~~~~~~ 67 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYA-RQYFKNKVKC-GLDKETP 67 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHH-HHHHHHHSCS-CTTCCCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH-HHHHHHHHhc-CCCCCcc
Confidence 57999999999999999999999999999999999999999999 9999888776 5555443
No 3
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.89 E-value=1.4e-23 Score=111.74 Aligned_cols=50 Identities=28% Similarity=0.492 Sum_probs=46.1
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092 1 MKPWGFPDEEDRLICRLFAISGS-RWSVIGAHLPGRTDNETNNYYRNTKLKR 51 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~~~gRt~~~~knrw~~~~l~~ 51 (76)
|++++||+|||++|+++|.+||. +|+.||..|||||++||++|| +.+|.+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW-QKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHH-HHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHH-HHHcCc
Confidence 68999999999999999999997 999999999999999999999 888765
No 4
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.89 E-value=2.2e-23 Score=111.03 Aligned_cols=50 Identities=30% Similarity=0.545 Sum_probs=47.4
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092 1 MKPWGFPDEEDRLICRLFAISGS-RWSVIGAHLPGRTDNETNNYYRNTKLKR 51 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~~~gRt~~~~knrw~~~~l~~ 51 (76)
|++|+||+|||++|+++|.+||. +|+.||..|||||++||++|| ..+|.+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW-HNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHH-HHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHH-HHHcCc
Confidence 68999999999999999999997 699999999999999999999 888865
No 5
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.88 E-value=3.1e-23 Score=123.65 Aligned_cols=74 Identities=22% Similarity=0.373 Sum_probs=70.0
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhc
Q 037092 1 MKPWGFPDEEDRLICRLFAISGS-RWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKN 75 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (76)
|++|+||+|||++|+++|..||. +|..||..|||||+.||+.|| ..+|.+.+..++|+++++..+...+..+++
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw-~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~ 76 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW-HNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 76 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHH-HHTTCCCCCCCCCCHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHH-HhccCCcccccCCCHHHHHHHHHHHHHhCC
Confidence 68999999999999999999996 699999999999999999999 999999999999999999999998887764
No 6
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=3.1e-23 Score=113.25 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=48.9
Q ss_pred CCCCCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchhhhHH
Q 037092 1 MKPWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKLKRKH 53 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~ 53 (76)
+++++||+|||++|+++|.+|| ++|+.||.+|||||+.||++|| +.+|.+.+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~l~p~i 58 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW-LRVLSGPS 58 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHH-HHTSCSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHH-HHHcCCcc
Confidence 5799999999999999999999 6999999999999999999999 98888764
No 7
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=8.2e-23 Score=113.50 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=52.8
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCC
Q 037092 1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGL 58 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~ 58 (76)
|++++||+|||++|+++|..||++|+.||. |+|||++||++|| +.+|.+.+.+..-
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw-~~~l~~~~~~~~~ 62 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHY-EFLLDKAAQRDSG 62 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHH-HHHHHHHHHSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHH-HHHhChHhcCCCC
Confidence 579999999999999999999999999999 8999999999999 9999999887754
No 8
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.87 E-value=9.5e-23 Score=125.34 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=70.2
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhc
Q 037092 1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKN 75 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (76)
+++|+||+|||++|+++|..||.+|..||..|||||+.||+.|| ..+|.+.+.+++|+++++..+...+..+++
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw-~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRW-KNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHH-HHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH-hhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 47899999999999999999999999999999999999999999 999999999999999999999999887764
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.87 E-value=1.5e-22 Score=124.51 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=69.7
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhc
Q 037092 1 MKPWGFPDEEDRLICRLFAISGS-RWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKN 75 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (76)
+++|+||+|||++|+++|.+||. +|+.||..|||||+.||++|| ..+|.+.+.+++|+++++..+...+..+++
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw-~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERW-HNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHH-HHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHH-HHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 57899999999999999999995 699999999999999999999 999999999999999999999999887764
No 10
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.87 E-value=3.8e-22 Score=106.66 Aligned_cols=49 Identities=27% Similarity=0.228 Sum_probs=45.6
Q ss_pred CCCCCChHHHHHHHHHHHHhC-CchhhhhhcCC--CCCHHHHHHHHhhchhhh
Q 037092 2 KPWGFPDEEDRLICRLFAISG-SRWSVIGAHLP--GRTDNETNNYYRNTKLKR 51 (76)
Q Consensus 2 ~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~--gRt~~~~knrw~~~~l~~ 51 (76)
++++||+|||++|+++|.+|| ++|+.||..|| |||+.||++|| .++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw-~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW-RTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH-HHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHH-HHHHcc
Confidence 589999999999999999999 69999999999 99999999999 777653
No 11
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.86 E-value=2.7e-22 Score=120.27 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=68.0
Q ss_pred CCCCChHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhc
Q 037092 3 PWGFPDEEDRLICRLFAISGS-RWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKN 75 (76)
Q Consensus 3 ~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (76)
+|+||+|||++|+++|..||. +|..||..|||||+.||+.|| ..+|.+.+..++|+++++..+...+..+++
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~ 73 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERW-NNYINPALRTDPWSPEEDMLLDQKYAEYGP 73 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHH-HHHSSSCCTTCCCCHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHH-HHHHcccccccccCHHHHHHHHHHHHHhCc
Confidence 689999999999999999995 899999999999999999999 999999999999999999999998887764
No 12
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.86 E-value=4.5e-22 Score=111.41 Aligned_cols=56 Identities=25% Similarity=0.184 Sum_probs=52.0
Q ss_pred CCCCCChHHHHHHHHHHHHhC-CchhhhhhcCC--CCCHHHHHHHHhhchhhhHHhhCCC
Q 037092 2 KPWGFPDEEDRLICRLFAISG-SRWSVIGAHLP--GRTDNETNNYYRNTKLKRKHEEGGL 58 (76)
Q Consensus 2 ~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~--gRt~~~~knrw~~~~l~~~~~~~~~ 58 (76)
++++||+|||++|+++|.+|| ++|+.||..|| |||+.||++|| ..+|++.+.+...
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw-~~~l~p~i~k~~~ 67 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW-RTMKKLKLISSDS 67 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHH-HHHHHTSCCCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHH-HHHcCCCCCCCCC
Confidence 689999999999999999999 69999999999 99999999999 9999998776644
No 13
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.86 E-value=1.7e-22 Score=114.73 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=43.1
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhc
Q 037092 1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNT 47 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~ 47 (76)
|++|+||+|||++|+++|.+||++|+.||+.| |||+++||||| +.
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw-~~ 65 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRC-RL 65 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHH-HH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHH-HH
Confidence 68999999999999999999999999999999 99999999999 53
No 14
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.85 E-value=6.8e-22 Score=122.12 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=68.2
Q ss_pred CCCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhc
Q 037092 3 PWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKN 75 (76)
Q Consensus 3 ~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (76)
+|+||+|||++|+++|..|| .+|..||..|||||+.||+.|| ..+|.+.+.+++|+++++..+...+..+++
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw-~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~ 74 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERW-FNHLDPAVVKHAWTPEEDETIFRNYLKLGS 74 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHH-HHHTSTTCCCSCCCHHHHHHHHHHHHHSCS
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHH-hhccCccccCCCCCHHHHHHHHHHHHHHCc
Confidence 79999999999999999999 6799999999999999999999 999999999999999999999988887764
No 15
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=1e-21 Score=107.39 Aligned_cols=50 Identities=12% Similarity=0.220 Sum_probs=46.6
Q ss_pred CCCCCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092 1 MKPWGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKLKR 51 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l~~ 51 (76)
|.+++||+|||++|+++|..|| ++|..||.+|||||+.||++|| ..+|.+
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~-~~~l~~ 56 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHY-MKYFSG 56 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHH-HHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHH-HHHccC
Confidence 5789999999999999999999 7999999999999999999999 777653
No 16
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.85 E-value=1.1e-21 Score=124.18 Aligned_cols=74 Identities=22% Similarity=0.373 Sum_probs=69.6
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhc
Q 037092 1 MKPWGFPDEEDRLICRLFAISGS-RWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKN 75 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (76)
|++|+||+|||++|+++|..||. +|+.||..|||||++||++|| ..+|.+.+...+|+++++..+...+..+++
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw-~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW-HNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHH-HHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHH-HHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 57899999999999999999996 699999999999999999999 999999999999999999999998887764
No 17
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.85 E-value=1.7e-21 Score=120.30 Aligned_cols=60 Identities=32% Similarity=0.545 Sum_probs=55.3
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCCC
Q 037092 1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKVP 61 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~~ 61 (76)
|++|+||+|||++|+++|.+||++|+.||.+|||||+++|++|| ++++++.+....++..
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw-~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRW-NSSISKRISTNSNHKE 111 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHH-HHTTGGGCCCCTTSCC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH-HHHHHHHhhcCCCccc
Confidence 57899999999999999999999999999999999999999999 9999999887765443
No 18
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.85 E-value=1.9e-21 Score=115.93 Aligned_cols=52 Identities=40% Similarity=0.706 Sum_probs=47.1
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHH
Q 037092 1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKH 53 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~ 53 (76)
|++|+||+|||++|+++|.+||++|+.||.+|||||+++|+||| +.++++++
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw-~~~~~~~~ 105 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRKV 105 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHH-HHHTC---
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH-HHHHhccC
Confidence 57899999999999999999999999999999999999999999 88887653
No 19
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.84 E-value=3.3e-21 Score=115.50 Aligned_cols=54 Identities=24% Similarity=0.440 Sum_probs=49.4
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHhh
Q 037092 1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEE 55 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~ 55 (76)
|++|+||+|||.+|+++|.+||++|+.||.+|||||+++|++|| +.++++....
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw-~~l~r~~~~~ 104 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW-MMIARHRAKH 104 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHH-HHHHHHHHSS
T ss_pred ccccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHH-HHHHhhHHHh
Confidence 57899999999999999999999999999999999999999999 8777765443
No 20
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=109.35 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=53.1
Q ss_pred CCCCCCChHHHHHHHHHHHHhC------CchhhhhhcCCCCCHHHHHHHHhhchhhhHHhhCCCCC
Q 037092 1 MKPWGFPDEEDRLICRLFAISG------SRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEEGGLKV 60 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G------~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~~~~~~ 60 (76)
+++++||+|||++|++++..|| .+|..||.+|||||++||++|| +.+|.+.++.+...|
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~-~~~l~~~~k~g~~~p 70 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQV-QKYFIKLTKAGIPVS 70 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHH-HHHHGGGSTTCSCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHH-HHHHHHHHhcCCCCC
Confidence 5789999999999999999999 6899999999999999999999 999988876654433
No 21
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.83 E-value=5e-21 Score=106.13 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=45.6
Q ss_pred CCCCCChHHHHHHHHHHHHhC-CchhhhhhcCC--CCCHHHHHHHHhhchhhhH
Q 037092 2 KPWGFPDEEDRLICRLFAISG-SRWSVIGAHLP--GRTDNETNNYYRNTKLKRK 52 (76)
Q Consensus 2 ~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~--gRt~~~~knrw~~~~l~~~ 52 (76)
++++||+|||++|+++|.+|| .+|+.||..+| |||+.||++|| .+++++.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw-~nl~k~g 62 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW-RTMKRLG 62 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH-HHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHH-HHHhccC
Confidence 689999999999999999999 58999999866 99999999999 7777654
No 22
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.83 E-value=9e-21 Score=116.51 Aligned_cols=52 Identities=40% Similarity=0.710 Sum_probs=47.9
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHH
Q 037092 1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKH 53 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~ 53 (76)
|++|+||+|||++|+++|.+||++|+.||.+|||||+++|+||| +.++++++
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~-~~~~~~~~ 128 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHW-NSTMRRKV 128 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHH-HTTTTC--
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHH-HHHHhccC
Confidence 57899999999999999999999999999999999999999999 88887653
No 23
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.82 E-value=1.3e-20 Score=102.54 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=43.8
Q ss_pred CCCCCCChHHHHHHHHHHHHhC-CchhhhhhcCC-CCCHHHHHHHHhhch
Q 037092 1 MKPWGFPDEEDRLICRLFAISG-SRWSVIGAHLP-GRTDNETNNYYRNTK 48 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~-gRt~~~~knrw~~~~ 48 (76)
|.+++||+|||++|+++|.+|| ++|..||.+|| |||+.||++|| ..+
T Consensus 7 ~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~-~~~ 55 (58)
T 2elk_A 7 GFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHY-LKT 55 (58)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHH-HHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHH-HHH
Confidence 4688999999999999999999 89999999999 99999999999 544
No 24
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.72 E-value=5.3e-22 Score=116.16 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=48.9
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHh
Q 037092 1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHE 54 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~ 54 (76)
|++|+||+|||++|+++|..||++|+.||.+|||||++||++|| +.++++...
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~-~~~lrk~~l 66 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFY-FNYKKRQNL 66 (89)
Confidence 57899999999999999999999999999999999999999999 888776533
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.81 E-value=4.9e-20 Score=113.20 Aligned_cols=51 Identities=27% Similarity=0.480 Sum_probs=46.9
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhH
Q 037092 1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~ 52 (76)
+++|+||+|||++|+++|.+||++|+.||..|||||+++|++|| +.++++.
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw-~~l~~k~ 110 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW-VTISNKL 110 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHH-HHHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH-HHHHHhc
Confidence 57899999999999999999999999999999999999999999 6655543
No 26
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.80 E-value=9.1e-20 Score=115.39 Aligned_cols=52 Identities=40% Similarity=0.706 Sum_probs=47.8
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHH
Q 037092 1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKH 53 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~ 53 (76)
|++++||+|||.+|++++.+||++|+.||++|||||+++|+||| +.++++++
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~-~~~~r~~~ 159 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRKV 159 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHH-HTTTCC--
T ss_pred ccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHH-HHHHhccC
Confidence 57899999999999999999999999999999999999999999 88887653
No 27
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.78 E-value=1.3e-19 Score=111.32 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=56.1
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-chhhhhhc----CCCCCHHHHHHHHhhchhh-----hHHhhC-CCCCCCchhHHHH
Q 037092 1 MKPWGFPDEEDRLICRLFAISGS-RWSVIGAH----LPGRTDNETNNYYRNTKLK-----RKHEEG-GLKVPMKKNLERD 69 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~----~~gRt~~~~knrw~~~~l~-----~~~~~~-~~~~~~~~~~~~~ 69 (76)
.++++||+|||+.|+++|.+||. +|+.|+.. |+|||+++||+|| .++++ +.++.+ ++++.+...+..+
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRW-rnllk~~~~~p~~krg~~~p~e~~~rv~~~ 93 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKW-KTLVHTASIAPQQRRGEPVPQDLLDRVLAA 93 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHH-HHHHHHHHTCSTTCCCSCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHH-HHHHhhhccCCcccCCCCCCHHHHHHHHHH
Confidence 36899999999999999999996 99999997 5999999999999 88887 554443 2222222334455
Q ss_pred HHHhhc
Q 037092 70 LRIVKN 75 (76)
Q Consensus 70 ~~~~~~ 75 (76)
...++|
T Consensus 94 h~~~gn 99 (121)
T 2juh_A 94 HAYWSQ 99 (121)
T ss_dssp HHHHHH
T ss_pred HHHHcc
Confidence 555544
No 28
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.78 E-value=1.3e-19 Score=121.63 Aligned_cols=53 Identities=25% Similarity=0.400 Sum_probs=49.1
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCc------hhhhhhcCCCCCHHHHHHHHhhchhhhHHh
Q 037092 1 MKPWGFPDEEDRLICRLFAISGSR------WSVIGAHLPGRTDNETNNYYRNTKLKRKHE 54 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~~------W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~ 54 (76)
+++++||+|||++|+++|.++|++ |+.||++|||||++|||+|| +.+|++.+.
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw-~~~L~~~ln 64 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRF-RVYLSKRLE 64 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHH-HHTTGGGCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHH-HHHHhhhcc
Confidence 468999999999999999999975 99999999999999999999 999999986
No 29
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.77 E-value=5.3e-19 Score=108.67 Aligned_cols=74 Identities=14% Similarity=0.123 Sum_probs=60.6
Q ss_pred CCCCCChHHHHHHHHHHHHhCC-chhhhhhc----CCCCCHHHHHHHHhhchh-----hhHHhhCCCCCCC-chhHHHHH
Q 037092 2 KPWGFPDEEDRLICRLFAISGS-RWSVIGAH----LPGRTDNETNNYYRNTKL-----KRKHEEGGLKVPM-KKNLERDL 70 (76)
Q Consensus 2 ~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~----~~gRt~~~~knrw~~~~l-----~~~~~~~~~~~~~-~~~~~~~~ 70 (76)
++++||+|||+.|+++|.+||. +|+.|+.. |+|||+.+||+|| .+++ .+.++.+.+.|++ ...+..+.
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRW-rnllk~~~~~p~~kr~~~~p~e~~~~v~~~h 108 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKW-KTLVHTASIAPQQRRGAPVPQELLDRVLAAQ 108 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHH-HHHHHHHHSCTTTCCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHH-HHHHhhccCCccccCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999996 99999986 4999999999999 8877 4566666555555 35566777
Q ss_pred HHhhcC
Q 037092 71 RIVKNH 76 (76)
Q Consensus 71 ~~~~~h 76 (76)
..++||
T Consensus 109 ~~~g~~ 114 (122)
T 2roh_A 109 AYWSVD 114 (122)
T ss_dssp HHHHSS
T ss_pred HHHhhH
Confidence 777775
No 30
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.76 E-value=1.7e-18 Score=100.25 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=42.7
Q ss_pred CCCChHHHHHHHHHHHHhCC-chhhhhhc----CCCCCHHHHHHHHhhchhh
Q 037092 4 WGFPDEEDRLICRLFAISGS-RWSVIGAH----LPGRTDNETNNYYRNTKLK 50 (76)
Q Consensus 4 ~~wT~eED~~L~~~~~~~G~-~W~~Ia~~----~~gRt~~~~knrw~~~~l~ 50 (76)
++||+|||+.|+++|.+||. +|+.|+.. |+|||+++||+|| .++++
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrW-rnllk 51 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKW-KTLVH 51 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHH-HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHH-HHHHH
Confidence 48999999999999999996 99999995 8999999999999 77775
No 31
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.76 E-value=1e-18 Score=99.05 Aligned_cols=47 Identities=11% Similarity=0.223 Sum_probs=43.4
Q ss_pred CCCCCCChHHHHHHHHHHHHhC----CchhhhhhcCCCCCHHHHHHHHhhch
Q 037092 1 MKPWGFPDEEDRLICRLFAISG----SRWSVIGAHLPGRTDNETNNYYRNTK 48 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G----~~W~~Ia~~~~gRt~~~~knrw~~~~ 48 (76)
+.+++||+|||.+|+.++..|| .+|..||.+|||||+++|++|| +.+
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry-~~L 66 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY-KLL 66 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHH-HHH
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHH-HHH
Confidence 3678999999999999999999 6899999999999999999999 543
No 32
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-18 Score=98.63 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=43.3
Q ss_pred CCCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhch
Q 037092 2 KPWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTK 48 (76)
Q Consensus 2 ~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~ 48 (76)
.+++||+|||++|++++.+||.+|..||.+|+|||+.||++|| ..+
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~-~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF-LRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHH-TTS
T ss_pred cCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH-HHh
Confidence 4789999999999999999999999999999999999999999 544
No 33
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.73 E-value=1e-17 Score=100.72 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=44.7
Q ss_pred CCCCCCChHHHHHHHHHHHHhCC-chhhhhhcC----CCCCHHHHHHHHhhchhh
Q 037092 1 MKPWGFPDEEDRLICRLFAISGS-RWSVIGAHL----PGRTDNETNNYYRNTKLK 50 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~-~W~~Ia~~~----~gRt~~~~knrw~~~~l~ 50 (76)
.++++||+|||+.|+++|.+||. +|+.|+..+ +|||+++||+|| .++++
T Consensus 11 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrW-rnllk 64 (105)
T 2aje_A 11 RIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKW-KTLVH 64 (105)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHH-HHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHH-HHHHh
Confidence 36899999999999999999996 999999965 899999999999 77774
No 34
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.8e-17 Score=91.10 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=43.4
Q ss_pred CCCCCChHHHHHHHHHHHHhCCchhhhh---hcCCCCCHHHHHHHHhhchhh
Q 037092 2 KPWGFPDEEDRLICRLFAISGSRWSVIG---AHLPGRTDNETNNYYRNTKLK 50 (76)
Q Consensus 2 ~~~~wT~eED~~L~~~~~~~G~~W~~Ia---~~~~gRt~~~~knrw~~~~l~ 50 (76)
++.+||+|||+.|+++|.+||.+|+.|+ .+++|||+.+++++| ..+.+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~-r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKY-HRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHH-HHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHH-HHHHh
Confidence 4789999999999999999999999999 578999999999999 55443
No 35
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.66 E-value=1.4e-16 Score=93.84 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=43.7
Q ss_pred CCCCChHHHHHHHHHHHHhC----CchhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092 3 PWGFPDEEDRLICRLFAISG----SRWSVIGAHLPGRTDNETNNYYRNTKLKR 51 (76)
Q Consensus 3 ~~~wT~eED~~L~~~~~~~G----~~W~~Ia~~~~gRt~~~~knrw~~~~l~~ 51 (76)
+++||+|||.+|++++..|| .+|..||..|||||+++|++|| +.++..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry-~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHH-HHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHH-HHHHHH
Confidence 57999999999999999996 6799999999999999999999 766544
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=8.4e-15 Score=80.08 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=40.9
Q ss_pred CCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
.++||+||++++++++..||.+|..||.+|||||..+|.++|
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYY 53 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH
Confidence 479999999999999999999999999999999999999999
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.41 E-value=3.1e-13 Score=76.18 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=42.4
Q ss_pred CCCCCChHHHHHHHHHHHHhC----CchhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092 2 KPWGFPDEEDRLICRLFAISG----SRWSVIGAHLPGRTDNETNNYYRNTKLKR 51 (76)
Q Consensus 2 ~~~~wT~eED~~L~~~~~~~G----~~W~~Ia~~~~gRt~~~~knrw~~~~l~~ 51 (76)
+.++||.|||++|.+++..|+ .+|..||.++ |||..+|++|| ..+...
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y-~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKA-KQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHH-HHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHH-HHHHHh
Confidence 468999999999999999997 5799999998 99999999999 655443
No 38
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.37 E-value=1.5e-12 Score=76.54 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=49.1
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCchhhhhhcC-----CCCCHHHHHHHHhhchhhhHHhhCC
Q 037092 1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHL-----PGRTDNETNNYYRNTKLKRKHEEGG 57 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~-----~gRt~~~~knrw~~~~l~~~~~~~~ 57 (76)
|..++||.||+..|++|+.+||.+|..|+..+ ++||..++|+|| ....++.+...+
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~Ry-Y~v~~~l~~~r~ 88 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERY-YHICAKLANVRA 88 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHH-HHHHHHHHHHTC
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHH-HHHHHHHHHhcC
Confidence 34579999999999999999999999999999 589999999999 777776666553
No 39
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.37 E-value=6.1e-13 Score=88.78 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=44.3
Q ss_pred CCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092 3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKR 51 (76)
Q Consensus 3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~ 51 (76)
.++||+||+.++++++..||.+|..||..+++||.+||+++| +.+.++
T Consensus 133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY-~~~kKR 180 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF-VNYRRR 180 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHH-HHTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH-HHHHHH
Confidence 579999999999999999999999999999999999999999 665544
No 40
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=99.16 E-value=5.7e-11 Score=64.51 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=41.1
Q ss_pred CCCCChHHHHHHHHHHHHh--------CCc-hhhhhh-cCCCCCHHHHHHHHhhchh
Q 037092 3 PWGFPDEEDRLICRLFAIS--------GSR-WSVIGA-HLPGRTDNETNNYYRNTKL 49 (76)
Q Consensus 3 ~~~wT~eED~~L~~~~~~~--------G~~-W~~Ia~-~~~gRt~~~~knrw~~~~l 49 (76)
+.+||+|||.+|++.|.++ |++ |..++. .+|++|-.++++|| ..+|
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy-~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRY-LKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHH-HHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHH-HHHc
Confidence 5699999999999999999 654 999999 89999999999999 5444
No 41
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.09 E-value=1.5e-10 Score=65.35 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=40.7
Q ss_pred CCCCChHHHHHHHHHHHHhCC----chhhhhhcCCCCCHHHHHHHHhhch
Q 037092 3 PWGFPDEEDRLICRLFAISGS----RWSVIGAHLPGRTDNETNNYYRNTK 48 (76)
Q Consensus 3 ~~~wT~eED~~L~~~~~~~G~----~W~~Ia~~~~gRt~~~~knrw~~~~ 48 (76)
.++||.||+.+|..+...|+. +|..||..+||||..+|+.|| ..+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY-~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKY-MEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHH-HHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHH-HHH
Confidence 468999999999999999983 699999999999999999999 544
No 42
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.82 E-value=1.1e-08 Score=59.71 Aligned_cols=45 Identities=24% Similarity=0.401 Sum_probs=40.7
Q ss_pred CCChHHHHHHHHHHHHhCC---chhhhhhcCCCCCHHHHHHHHhhchhh
Q 037092 5 GFPDEEDRLICRLFAISGS---RWSVIGAHLPGRTDNETNNYYRNTKLK 50 (76)
Q Consensus 5 ~wT~eED~~L~~~~~~~G~---~W~~Ia~~~~gRt~~~~knrw~~~~l~ 50 (76)
-||.|||..||..+.+-|. .|+.||..|.+|+.+||++|| +.+++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RF-q~Lm~ 82 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF-RELMQ 82 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHH-HHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHH-HHHHH
Confidence 5999999999999999996 799999999999999999999 55443
No 43
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.81 E-value=1.1e-09 Score=61.64 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=38.2
Q ss_pred CCCChHHHHHHHHHHHHhCC----chhhhhhcCCCCCHHHHHHHH
Q 037092 4 WGFPDEEDRLICRLFAISGS----RWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 4 ~~wT~eED~~L~~~~~~~G~----~W~~Ia~~~~gRt~~~~knrw 44 (76)
++||.||++++..+...|+. +|.+||..+||||..+|+.+|
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY 65 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence 58999999999999999984 699999999999999999998
No 44
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2.3e-08 Score=54.59 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=40.6
Q ss_pred CCCCCChHHHHHHHHHHHHhCCchhhhhh-cCCCCCHHHHHHHH
Q 037092 2 KPWGFPDEEDRLICRLFAISGSRWSVIGA-HLPGRTDNETNNYY 44 (76)
Q Consensus 2 ~~~~wT~eED~~L~~~~~~~G~~W~~Ia~-~~~gRt~~~~knrw 44 (76)
...+||+||-.+..+.+.+||..|..|+. .+|+||..+|...|
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFY 51 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHH
Confidence 46799999999999999999999999999 69999999999988
No 45
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=98.23 E-value=9.4e-10 Score=61.11 Aligned_cols=42 Identities=17% Similarity=0.323 Sum_probs=38.8
Q ss_pred CCChHHHHHHHHHHHHhCC---chhhhhhcCCCCCHHHHHHHHhhch
Q 037092 5 GFPDEEDRLICRLFAISGS---RWSVIGAHLPGRTDNETNNYYRNTK 48 (76)
Q Consensus 5 ~wT~eED~~L~~~~~~~G~---~W~~Ia~~~~gRt~~~~knrw~~~~ 48 (76)
.||.|||..|+..+.+-|. .|..||..+ +||++||++|| ..+
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF-~~L 60 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERF-QQL 60 (70)
Confidence 5999999999999999997 799999999 99999999999 543
No 46
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.70 E-value=6e-08 Score=56.84 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=47.3
Q ss_pred CCCCCCChHHHHHHHHHHHHhCCchhhhhhcCC-----CCCHHHHHHHHhhchhhhHHhhC
Q 037092 1 MKPWGFPDEEDRLICRLFAISGSRWSVIGAHLP-----GRTDNETNNYYRNTKLKRKHEEG 56 (76)
Q Consensus 1 i~~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~-----gRt~~~~knrw~~~~l~~~~~~~ 56 (76)
|+...||.||-..|++|+..|+-+|..|+..+. +||..++|+|| +...++.+...
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RY-Y~V~~~l~~~r 87 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERY-YHICAKLANVR 87 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHH-HHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHH-HHHHHHHHHhh
Confidence 345789999999999999999999999999874 79999999999 77666665544
No 47
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.65 E-value=6.7e-08 Score=56.59 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=39.8
Q ss_pred CCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 4 WGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 4 ~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
..||+||..+..+.+..||.+|..||..+|+||..+|-..|
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHH
Confidence 58999999999999999999999999999999999999988
No 48
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.57 E-value=1.5e-07 Score=52.33 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=39.8
Q ss_pred CCCCChHHHHHHHHHHHHhCCchhhhhh-cCCCCCHHHHHHHH
Q 037092 3 PWGFPDEEDRLICRLFAISGSRWSVIGA-HLPGRTDNETNNYY 44 (76)
Q Consensus 3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~-~~~gRt~~~~knrw 44 (76)
..+||+||-.+..+.+..||..|..|+. .+|+||..+|...|
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHH
Confidence 3589999999999999999999999999 69999999999998
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.57 E-value=7.4e-08 Score=70.00 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=40.7
Q ss_pred CCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
...||+||-+++++++.+||..|..||..++.||..||+++|
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy 421 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF 421 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHH
Confidence 478999999999999999999999999999999999999998
No 50
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.18 E-value=2.9e-06 Score=57.07 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=23.6
Q ss_pred chhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092 24 RWSVIGAHLPGRTDNETNNYYRNTKLKR 51 (76)
Q Consensus 24 ~W~~Ia~~~~gRt~~~~knrw~~~~l~~ 51 (76)
.|+.||..+|+||++++|+|| ...++.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRy-rKfl~~ 199 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRF-RKFLLA 199 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHH-HHTHHH
T ss_pred HHHHHHHHCCCCChhhHHHHH-HHHHhh
Confidence 699999999999999999999 655543
No 51
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.96 E-value=5.4e-06 Score=47.19 Aligned_cols=51 Identities=12% Similarity=0.253 Sum_probs=39.9
Q ss_pred CCCCCChHHHHHHHHHHHHhCC----------chhhhhhcCC----CCCHHHHHHHHhhchhhhHHh
Q 037092 2 KPWGFPDEEDRLICRLFAISGS----------RWSVIGAHLP----GRTDNETNNYYRNTKLKRKHE 54 (76)
Q Consensus 2 ~~~~wT~eED~~L~~~~~~~G~----------~W~~Ia~~~~----gRt~~~~knrw~~~~l~~~~~ 54 (76)
+...||++|-..||+++..+-. .|..||..|. .||+.||+++| .+ |.+..+
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~-~n-L~k~Yk 67 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKW-RN-LLKEFK 67 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHH-HH-HHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHH-HH-HHHHHH
Confidence 3578999999999999986321 4999999873 79999999999 54 444443
No 52
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.88 E-value=0.0024 Score=44.07 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=40.0
Q ss_pred CCCChHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHhhchh
Q 037092 4 WGFPDEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYYRNTKL 49 (76)
Q Consensus 4 ~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw~~~~l 49 (76)
+.||..+....+.++.+|| ..|..||..|+|.|...|+.++ ....
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~-~vFw 156 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN-AVFW 156 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH-HHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHH-HHHH
Confidence 5799999999999999999 5799999999999999998876 4433
No 53
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=96.74 E-value=0.00053 Score=41.69 Aligned_cols=27 Identities=7% Similarity=-0.079 Sum_probs=24.7
Q ss_pred CCCC-CCChHHHHHHHHHHHHhCCchhh
Q 037092 1 MKPW-GFPDEEDRLICRLFAISGSRWSV 27 (76)
Q Consensus 1 i~~~-~wT~eED~~L~~~~~~~G~~W~~ 27 (76)
+++| +|++||+..|+.++..+|++|+.
T Consensus 76 ~krg~~~p~e~~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 76 QRRGEPVPQDLLDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHccchhc
Confidence 4677 99999999999999999999987
No 54
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.67 E-value=0.00028 Score=51.40 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 4 WGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 4 ~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
..||++|..+..+.+..||..|..|+.+||+||..+|-.+|
T Consensus 190 d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFY 230 (482)
T ss_dssp -----------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHh
Confidence 36999999999999999999999999999999999999887
No 55
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=96.66 E-value=0.0056 Score=33.32 Aligned_cols=42 Identities=10% Similarity=-0.102 Sum_probs=36.7
Q ss_pred CCCCChHHHHHHHHHHHHhCCc---hhhhhhcC--CCCCHHHHHHHH
Q 037092 3 PWGFPDEEDRLICRLFAISGSR---WSVIGAHL--PGRTDNETNNYY 44 (76)
Q Consensus 3 ~~~wT~eED~~L~~~~~~~G~~---W~~Ia~~~--~gRt~~~~knrw 44 (76)
+-.||+|.-+..++++..+|.. +..|-..| +|-|-.+|+.+.
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHL 53 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL 53 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHH
Confidence 4579999999999999999954 67888765 699999999987
No 56
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.59 E-value=0.0027 Score=43.85 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=39.4
Q ss_pred CCCCChHHHHHHHHHHHHhCC----chhhhhh------------cCCCCCHHHHHHHHhhchhh
Q 037092 3 PWGFPDEEDRLICRLFAISGS----RWSVIGA------------HLPGRTDNETNNYYRNTKLK 50 (76)
Q Consensus 3 ~~~wT~eED~~L~~~~~~~G~----~W~~Ia~------------~~~gRt~~~~knrw~~~~l~ 50 (76)
...||.|||..|+-++.+||- .|..|.. ++..||+.+|..|. +++++
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc-~tLi~ 274 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC-NTLIT 274 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH-HHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH-HHHHH
Confidence 468999999999999999994 5999862 45689999999999 66554
No 57
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.57 E-value=0.002 Score=41.42 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCChHHHHHHHHHHHHhC-Cchhhhhh
Q 037092 5 GFPDEEDRLICRLFAISG-SRWSVIGA 30 (76)
Q Consensus 5 ~wT~eED~~L~~~~~~~G-~~W~~Ia~ 30 (76)
.||.+||..|+..+.+|| ++|..|..
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 699999999999999999 89998865
No 58
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.95 E-value=0.0064 Score=41.30 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=24.4
Q ss_pred CCCChHHHHHHHHHHHHhC-Cchhhhhh
Q 037092 4 WGFPDEEDRLICRLFAISG-SRWSVIGA 30 (76)
Q Consensus 4 ~~wT~eED~~L~~~~~~~G-~~W~~Ia~ 30 (76)
..|+.+||..|+..+.+|| +.|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999 89998864
No 59
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=95.55 E-value=0.0079 Score=36.51 Aligned_cols=24 Identities=8% Similarity=-0.212 Sum_probs=21.9
Q ss_pred CCCCCCChHH-HHHHHHHHHHhCCc
Q 037092 1 MKPWGFPDEE-DRLICRLFAISGSR 24 (76)
Q Consensus 1 i~~~~wT~eE-D~~L~~~~~~~G~~ 24 (76)
+++|.|+++| +..|+.++..+|++
T Consensus 90 ~kr~~~~p~e~~~~v~~~h~~~g~~ 114 (122)
T 2roh_A 90 QRRGAPVPQELLDRVLAAQAYWSVD 114 (122)
T ss_dssp TCCCSSCCHHHHHHHHHHHHHHHSS
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhhH
Confidence 5789999999 89999999999975
No 60
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.14 E-value=0.031 Score=39.60 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=38.4
Q ss_pred CCCCChHHHHHHHHHHHHhC----Cchhhhhhc------------CCCCCHHHHHHHHhhchhh
Q 037092 3 PWGFPDEEDRLICRLFAISG----SRWSVIGAH------------LPGRTDNETNNYYRNTKLK 50 (76)
Q Consensus 3 ~~~wT~eED~~L~~~~~~~G----~~W~~Ia~~------------~~gRt~~~~knrw~~~~l~ 50 (76)
...||++||..||-++.+|| +.|..|-.. |..||+..|..|. +++++
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc-~tLi~ 290 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRG-NTLLQ 290 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHH-HHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH-HHHHH
Confidence 45799999999999999999 459887432 4679999999999 66554
No 61
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.12 E-value=0.032 Score=35.70 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=38.6
Q ss_pred CCCCChHHHHHHHHHHHHhC---Cchhhhhh--cCCCCCHHHHHHHHhhchh
Q 037092 3 PWGFPDEEDRLICRLFAISG---SRWSVIGA--HLPGRTDNETNNYYRNTKL 49 (76)
Q Consensus 3 ~~~wT~eED~~L~~~~~~~G---~~W~~Ia~--~~~gRt~~~~knrw~~~~l 49 (76)
..+||+.|=..+++.+..|| .+|..|+. .|+++|...|+..+ ...+
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~-~~f~ 57 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLG-ELVH 57 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHH-HHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHH-HHHH
Confidence 36899999999999999999 57999986 47899999999876 4433
No 62
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=91.28 E-value=0.033 Score=30.78 Aligned_cols=35 Identities=9% Similarity=-0.129 Sum_probs=23.2
Q ss_pred HHHHHhhchhhhHHhhCCCCCCCchhHHHHHHHhhc
Q 037092 40 TNNYYRNTKLKRKHEEGGLKVPMKKNLERDLRIVKN 75 (76)
Q Consensus 40 ~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (76)
+.-|| ..+|.+.+.+++|+++++..+.+.++.+++
T Consensus 9 ~~~~~-~~~ldP~i~k~~wT~EED~~L~~l~~~~G~ 43 (73)
T 2llk_A 9 SGREN-LYFQGDRNHVGKYTPEEIEKLKELRIKHGN 43 (73)
T ss_dssp -----------CCCCCCSSCHHHHHHHHHHHHHHSS
T ss_pred cCcce-eeecCCCCCCCCCCHHHHHHHHHHHHHHCC
Confidence 34577 889999999999999999999999988875
No 63
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=88.99 E-value=1.3 Score=29.87 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=37.5
Q ss_pred CCCCChHHHHHHHHHHHHhC---Cchhhhhh--cCCCCCHHHHHHHH
Q 037092 3 PWGFPDEEDRLICRLFAISG---SRWSVIGA--HLPGRTDNETNNYY 44 (76)
Q Consensus 3 ~~~wT~eED~~L~~~~~~~G---~~W~~Ia~--~~~gRt~~~~knrw 44 (76)
+++||.-|-..|++.+.+|| .+|..|+. .|+.++...++.-+
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~ 49 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETY 49 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 68999999999999999999 57999875 57899999888877
No 64
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=88.59 E-value=0.84 Score=23.31 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 9 EEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 9 eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
+.+..++.++...|-.+..||..+ |-|...|+++.
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~ 52 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRV 52 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 445556667667799999999998 88999999876
No 65
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=85.79 E-value=1.3 Score=23.19 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=27.3
Q ss_pred CChHHHHHHHHHHHH----hCCchhhhhhcCCCCCHHHHHHHH
Q 037092 6 FPDEEDRLICRLFAI----SGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 6 wT~eED~~L~~~~~~----~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
.++. +..++.++.- .|-.+..||..+ |-|...|+.+.
T Consensus 11 L~~~-er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~ 51 (73)
T 1ku3_A 11 LSER-EAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIE 51 (73)
T ss_dssp SCHH-HHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCHH-HHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHH
Confidence 3444 4445555554 578899999998 89999999976
No 66
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=83.36 E-value=3.2 Score=29.32 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=36.3
Q ss_pred CCCChHHHHHHHHHHHHhC-CchhhhhhcCC-CCCHHHHHHHH
Q 037092 4 WGFPDEEDRLICRLFAISG-SRWSVIGAHLP-GRTDNETNNYY 44 (76)
Q Consensus 4 ~~wT~eED~~L~~~~~~~G-~~W~~Ia~~~~-gRt~~~~knrw 44 (76)
+.||.-+=..++.++.+|| ..-..||..|. |.|...|+.+.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~ 166 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYA 166 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHH
Confidence 5799999999999999999 55899999997 99999999654
No 67
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=82.87 E-value=1.5 Score=22.55 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHH----HhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 7 PDEEDRLICRLFA----ISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 7 T~eED~~L~~~~~----~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
++.|- .++.++. ..|-.+..||..+ |-|...|+.+.
T Consensus 7 ~~~er-~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~ 46 (68)
T 2p7v_B 7 TAREA-KVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIE 46 (68)
T ss_dssp CHHHH-HHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CHHHH-HHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHH
Confidence 44444 4444544 3478899999998 89999999987
No 68
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=82.31 E-value=2.4 Score=23.13 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 9 EEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 9 eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
+.+..++.++...|-.-..||..+ |-+...|+.+.
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l 74 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRL 74 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 445566667777788999999998 89999999987
No 69
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=80.17 E-value=5.1 Score=23.76 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=35.2
Q ss_pred HHHHHHHHhC--------CchhhhhhcC--CCC---CHHHHHHHHhhchhhhHHhhCCCCCCCchhHHHHHH
Q 037092 13 LICRLFAISG--------SRWSVIGAHL--PGR---TDNETNNYYRNTKLKRKHEEGGLKVPMKKNLERDLR 71 (76)
Q Consensus 13 ~L~~~~~~~G--------~~W~~Ia~~~--~gR---t~~~~knrw~~~~l~~~~~~~~~~~~~~~~~~~~~~ 71 (76)
.|...|..+| +.|..||..| |.. .+..+++.| ..+|-+.-. .++.+...+.+.+.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y-~k~L~~YE~---~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAY-CQYLLSYDS---LSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHH-HTTHHHHHH---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHH-HHHhHHHHC---cCHHHHhhHHHHHH
Confidence 4556667777 4599999988 322 246799999 777766533 44555555555443
No 70
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=79.35 E-value=4.4 Score=24.27 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 9 EEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 9 eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
+.+..++.++...|-+...||..+ |-|...|+++.
T Consensus 143 ~~~r~vl~l~~~~g~s~~EIA~~l-gis~~tV~~~l 177 (194)
T 1or7_A 143 EDLRMAITLRELDGLSYEEIAAIM-DCPVGTVRSRI 177 (194)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHT-TSCHHHHHHHH
T ss_pred HHHHHHhHHHHHcCCCHHHHHHHH-CCCHHHHHHHH
Confidence 445556666666788899999998 89999999987
No 71
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=79.24 E-value=1.8 Score=25.30 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=27.5
Q ss_pred HHHHHHHHhC--------CchhhhhhcCCCCCHHHHHHHHhhchhhh
Q 037092 13 LICRLFAISG--------SRWSVIGAHLPGRTDNETNNYYRNTKLKR 51 (76)
Q Consensus 13 ~L~~~~~~~G--------~~W~~Ia~~~~gRt~~~~knrw~~~~l~~ 51 (76)
.|..+|...| +.|..||..|.--.+..++..| ..+|-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y-~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIY-FRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHH-HHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHH-HHHHHH
Confidence 3556666666 3699999987544478999999 766654
No 72
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=78.08 E-value=4.9 Score=22.87 Aligned_cols=38 Identities=13% Similarity=0.332 Sum_probs=25.3
Q ss_pred HHHHHHHHhC--------CchhhhhhcCCCCC----HHHHHHHHhhchhhh
Q 037092 13 LICRLFAISG--------SRWSVIGAHLPGRT----DNETNNYYRNTKLKR 51 (76)
Q Consensus 13 ~L~~~~~~~G--------~~W~~Ia~~~~gRt----~~~~knrw~~~~l~~ 51 (76)
.|...|...| +.|..||..|.--+ +.+++..| ..+|-+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y-~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHY-ERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHH-HHHhHH
Confidence 3555666666 46999999884322 46788888 666544
No 73
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=78.01 E-value=2.6 Score=25.15 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 9 EEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 9 eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
+.+..++.++...|-+...||..+ |-|...|+++.
T Consensus 138 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l 172 (184)
T 2q1z_A 138 EAQRALIERAFFGDLTHRELAAET-GLPLGTIKSRI 172 (184)
T ss_dssp HHHHHHHHHHHHSCCSSCCSTTTC-CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 445566667777788999999998 88999999987
No 74
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=76.63 E-value=5.2 Score=23.34 Aligned_cols=38 Identities=13% Similarity=0.281 Sum_probs=25.8
Q ss_pred HHHHHHHHhC--------CchhhhhhcCCCCC----HHHHHHHHhhchhhh
Q 037092 13 LICRLFAISG--------SRWSVIGAHLPGRT----DNETNNYYRNTKLKR 51 (76)
Q Consensus 13 ~L~~~~~~~G--------~~W~~Ia~~~~gRt----~~~~knrw~~~~l~~ 51 (76)
.|..+|...| +.|..|+..|.--+ +..++..| ..+|-+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y-~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHY-ERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHH-HHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHH-HHHHHH
Confidence 3566677777 46999999883221 56789988 666544
No 75
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=76.35 E-value=6.4 Score=22.58 Aligned_cols=35 Identities=11% Similarity=0.253 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHH
Q 037092 7 PDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNN 42 (76)
Q Consensus 7 T~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~kn 42 (76)
+..-+..|..+....|..|..+|..+ |=++.+|.+
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 45567778888899999999999998 788877665
No 76
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=74.45 E-value=4.3 Score=23.69 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCchhhhhhcCCCCCHHHHHH
Q 037092 11 DRLICRLFAISGSRWSVIGAHLPGRTDNETNN 42 (76)
Q Consensus 11 D~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~kn 42 (76)
|..|..+....|..|..+|..+ |=|+.+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567778899999999999998 777777655
No 77
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=73.71 E-value=8.4 Score=22.04 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 10 EDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 10 ED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
.+..++.++...|-....||..+ |-|...|+.+.
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l 62 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNI 62 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 44555666667788999999999 88999999876
No 78
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=72.68 E-value=7.4 Score=22.91 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=26.2
Q ss_pred HHHHHHHHhC--------CchhhhhhcCCCCC----HHHHHHHHhhchhhh
Q 037092 13 LICRLFAISG--------SRWSVIGAHLPGRT----DNETNNYYRNTKLKR 51 (76)
Q Consensus 13 ~L~~~~~~~G--------~~W~~Ia~~~~gRt----~~~~knrw~~~~l~~ 51 (76)
.|..+|..+| +.|..||..|.--+ +.+++..| ..+|-+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y-~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQY-IQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHH-HHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHH-HHHHHH
Confidence 3556666666 36999999884322 45789988 777665
No 79
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=72.37 E-value=6.1 Score=23.10 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCchhhhhhcCCCCCHHHHHH
Q 037092 12 RLICRLFAISGSRWSVIGAHLPGRTDNETNN 42 (76)
Q Consensus 12 ~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~kn 42 (76)
..|..+....|..|..+|..+ |=++.+|..
T Consensus 25 ~~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 25 RQINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 356667889999999999998 777776654
No 80
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=72.20 E-value=7.7 Score=22.78 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=25.3
Q ss_pred HHHHHHHHhC--------CchhhhhhcCCCC--C--HHHHHHHHhhchhhh
Q 037092 13 LICRLFAISG--------SRWSVIGAHLPGR--T--DNETNNYYRNTKLKR 51 (76)
Q Consensus 13 ~L~~~~~~~G--------~~W~~Ia~~~~gR--t--~~~~knrw~~~~l~~ 51 (76)
.|...|...| +.|..|+..|.-- + +..++..| ..+|-+
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y-~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHY-ERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHH-HHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHH-HHHhHH
Confidence 3556666666 3699999988322 2 35788888 666554
No 81
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=71.88 E-value=5.7 Score=23.23 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCchhhhhhcCCCCCHHHHHH
Q 037092 12 RLICRLFAISGSRWSVIGAHLPGRTDNETNN 42 (76)
Q Consensus 12 ~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~kn 42 (76)
..|..+....|..|..+|..+ |=++.+|..
T Consensus 25 ~~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 25 RQINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp HHHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 356667889999999999998 777776655
No 82
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=71.21 E-value=6.7 Score=21.12 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHH----hCCchhhhhhcCCCCCHHHHHHHH
Q 037092 9 EEDRLICRLFAI----SGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 9 eED~~L~~~~~~----~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
+.+..++.++.- .|-++..||..+ |-|...|+.+-
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~ 59 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIE 59 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHH
Confidence 344455555554 577899999998 89999999976
No 83
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=70.56 E-value=4.3 Score=22.66 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=23.8
Q ss_pred HHHHHHHhC--------CchhhhhhcCCC----CCHHHHHHHHhhchhhh
Q 037092 14 ICRLFAISG--------SRWSVIGAHLPG----RTDNETNNYYRNTKLKR 51 (76)
Q Consensus 14 L~~~~~~~G--------~~W~~Ia~~~~g----Rt~~~~knrw~~~~l~~ 51 (76)
|..+|...| +.|..|+..|.- -.+..+++.| ..+|-+
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y-~k~L~~ 89 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHY-ERILYP 89 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHH-TTTTHH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHH-HHHHHH
Confidence 445555555 469999987732 1256788888 666544
No 84
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=70.16 E-value=9.4 Score=23.39 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 9 EEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 9 eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
+.+..++.++...|-+...||..+ |-|...|+.+.
T Consensus 190 ~~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~ 224 (239)
T 1rp3_A 190 EREKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLK 224 (239)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHH
Confidence 344455556656688899999998 89999999887
No 85
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=69.88 E-value=7.4 Score=22.33 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 7 PDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 7 T~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
++.+-+.|. +...|-+...||..+ |-|...|+++.
T Consensus 111 ~~~~r~v~~--~~~~g~s~~EIA~~l-gis~~tV~~~~ 145 (164)
T 3mzy_A 111 SKFEKEVLT--YLIRGYSYREIATIL-SKNLKSIDNTI 145 (164)
T ss_dssp CHHHHHHHH--HHTTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CHHHHHHHH--HHHcCCCHHHHHHHH-CCCHHHHHHHH
Confidence 344444444 455688899999998 89999999987
No 86
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=68.30 E-value=10 Score=19.47 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=27.0
Q ss_pred CChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 6 FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 6 wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
+|+.|-+.| .++ ..|-.-..||..+ |-+...|+.+.
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~ 52 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHR 52 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 355554444 555 6688899999999 78999999887
No 87
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=68.26 E-value=10 Score=21.71 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCchhhhhhcCCCCCHHHHHH
Q 037092 11 DRLICRLFAISGSRWSVIGAHLPGRTDNETNN 42 (76)
Q Consensus 11 D~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~kn 42 (76)
+..+-.+....|..|..+|..| |=++..|.+
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4556677788899999999998 777777655
No 88
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=65.44 E-value=20 Score=21.63 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=27.0
Q ss_pred HHHHHHHHhC--------CchhhhhhcCC--CC---CHHHHHHHHhhchhhhH
Q 037092 13 LICRLFAISG--------SRWSVIGAHLP--GR---TDNETNNYYRNTKLKRK 52 (76)
Q Consensus 13 ~L~~~~~~~G--------~~W~~Ia~~~~--gR---t~~~~knrw~~~~l~~~ 52 (76)
.|..+|...| +.|..|+..|. .. .+..++..| ..+|-+-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y-~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQY-MKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHH-HHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHH-HHHHHHH
Confidence 3556666676 45999999883 22 256899999 7777653
No 89
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=65.41 E-value=8.3 Score=23.13 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHH
Q 037092 8 DEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 8 ~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw 44 (76)
++-|..|+.+...-| -.++.||..+ |=|...|+.|.
T Consensus 2 D~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl 38 (162)
T 3i4p_A 2 DRLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRI 38 (162)
T ss_dssp CHHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHH
Confidence 356888888888777 4699999998 89999999999
No 90
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=64.91 E-value=14 Score=21.75 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=26.7
Q ss_pred HHHHHHHHhC--------CchhhhhhcCC--CC---CHHHHHHHHhhchhhh
Q 037092 13 LICRLFAISG--------SRWSVIGAHLP--GR---TDNETNNYYRNTKLKR 51 (76)
Q Consensus 13 ~L~~~~~~~G--------~~W~~Ia~~~~--gR---t~~~~knrw~~~~l~~ 51 (76)
.|..+|...| +.|..|+..|. .. .+..++..| ..+|-+
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y-~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQY-MKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHH-HHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHH-HHHHHH
Confidence 3556677777 46999999883 22 256899999 777665
No 91
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=64.85 E-value=15 Score=20.07 Aligned_cols=37 Identities=11% Similarity=-0.007 Sum_probs=29.6
Q ss_pred CCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 5 ~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
..|+.|-+.|. ++. .|..-..||..| |-+...|+++.
T Consensus 29 ~Lt~rE~~Vl~-l~~-~G~s~~eIA~~L-~iS~~TV~~~~ 65 (90)
T 3ulq_B 29 VLTPRECLILQ-EVE-KGFTNQEIADAL-HLSKRSIEYSL 65 (90)
T ss_dssp CCCHHHHHHHH-HHH-TTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHH-HHH-cCCCHHHHHHHH-CcCHHHHHHHH
Confidence 46777776655 444 799999999998 89999999987
No 92
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=63.99 E-value=5.7 Score=23.54 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=26.9
Q ss_pred HHHHHHHhC--------CchhhhhhcCCCCCHHHHHHHHhhchhhhH
Q 037092 14 ICRLFAISG--------SRWSVIGAHLPGRTDNETNNYYRNTKLKRK 52 (76)
Q Consensus 14 L~~~~~~~G--------~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~ 52 (76)
|..+|...| +.|..|+..|.--++..+++.| ..+|-+-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y-~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIY-FRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHH-HHHHHHH
Confidence 445555565 2499999987544489999999 7776653
No 93
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=63.70 E-value=13 Score=20.34 Aligned_cols=46 Identities=24% Similarity=0.332 Sum_probs=32.3
Q ss_pred CCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHHhh
Q 037092 5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKHEE 55 (76)
Q Consensus 5 ~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~~~ 55 (76)
..|+.|-++|. ++ ..|-.-..||..+ |-|...|+.+. . .+.+++..
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l-~-r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYV-S-RLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHH-H-HHHHHHTC
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHH-H-HHHHHHcC
Confidence 35666655554 55 6788899999998 88999999987 3 34444443
No 94
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=63.56 E-value=16 Score=20.91 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 6 FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 6 wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
.|+.+ ..++.++...|-+-..||..+ |-|...|+.+.
T Consensus 23 L~~~~-r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l 59 (113)
T 1s7o_A 23 LTDKQ-MNYIELYYADDYSLAEIADEF-GVSRQAVYDNI 59 (113)
T ss_dssp SCHHH-HHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 44444 455566667799999999998 89999999876
No 95
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=61.17 E-value=14 Score=18.59 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=28.7
Q ss_pred CCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 5 ~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
..|+.|-++|. ++ ..|..-..||..+ |-|...|+.+.
T Consensus 11 ~L~~~e~~il~-~~-~~g~s~~eIA~~l-~is~~tV~~~~ 47 (74)
T 1fse_A 11 LLTKREREVFE-LL-VQDKTTKEIASEL-FISEKTVRNHI 47 (74)
T ss_dssp CCCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHH
T ss_pred CCCHHHHHHHH-HH-HcCCCHHHHHHHH-CCCHHHHHHHH
Confidence 46776666654 44 5688899999998 78999999887
No 96
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=60.67 E-value=14 Score=19.67 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=28.3
Q ss_pred CCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 5 ~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
..|+.|-++|. ++ ..|-.-..||..+ |-+...|+++-
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l 57 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHV 57 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 35666655554 45 6788899999998 88999999887
No 97
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=60.51 E-value=11 Score=17.00 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=29.5
Q ss_pred CCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 4 WGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 4 ~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
...++++-..++.++. -|-....||..+ |-+...|....
T Consensus 4 ~~l~~~~~~~i~~~~~-~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 4 SALSDTERAQLDVMKL-LNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3567888777887764 487889999988 77877777654
No 98
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=58.52 E-value=7.6 Score=22.11 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=25.1
Q ss_pred HHHHHHHHhC--------CchhhhhhcCC--CC---CHHHHHHHHhhchhhh
Q 037092 13 LICRLFAISG--------SRWSVIGAHLP--GR---TDNETNNYYRNTKLKR 51 (76)
Q Consensus 13 ~L~~~~~~~G--------~~W~~Ia~~~~--gR---t~~~~knrw~~~~l~~ 51 (76)
.|..+|...| +.|..||..|. .. .+.++++.| ..+|-+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y-~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY-ERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH-HHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHH-HHHHHH
Confidence 3555666666 46999999873 21 245799988 666654
No 99
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=56.26 E-value=6.4 Score=24.88 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=11.6
Q ss_pred CCCCChHHHHHHH
Q 037092 3 PWGFPDEEDRLIC 15 (76)
Q Consensus 3 ~~~wT~eED~~L~ 15 (76)
.|-||+|+|+.|.
T Consensus 114 pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 114 PGIWTHDDDESLK 126 (168)
T ss_dssp TTCCCHHHHHHHH
T ss_pred CCCCChhhHHHHH
Confidence 6889999999886
No 100
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=54.84 E-value=9.7 Score=21.13 Aligned_cols=31 Identities=10% Similarity=0.212 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhCCchhhhhhcCCCCCHHHHHH
Q 037092 11 DRLICRLFAISGSRWSVIGAHLPGRTDNETNN 42 (76)
Q Consensus 11 D~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~kn 42 (76)
+..+-.+....|..|..+|..+ |=|+.+|..
T Consensus 14 ~~~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~~ 44 (99)
T 1fad_A 14 QVAFDIVCDNVGRDWKRLAREL-KVSEAKMDG 44 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3456667778899999999998 777777655
No 101
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=54.35 E-value=26 Score=21.28 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHH
Q 037092 8 DEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 8 ~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw 44 (76)
++-|..|+.+....| -.++.||..+ |=|...|..|.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl 62 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERI 62 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHH
Confidence 456777888877777 5799999998 78999999998
No 102
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=54.01 E-value=6 Score=23.41 Aligned_cols=35 Identities=14% Similarity=-0.007 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 9 EEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 9 eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
+++..++.++...|-+-..||..+ |-+.+.|+++-
T Consensus 96 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l 130 (157)
T 2lfw_A 96 PLSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLV 130 (157)
T ss_dssp TTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 345556667667788899999998 89999999987
No 103
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=52.09 E-value=31 Score=20.00 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHH
Q 037092 8 DEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 8 ~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw 44 (76)
++-|..|+.+....| -.++.||..+ |=+...|..+.
T Consensus 8 d~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l 44 (151)
T 2dbb_A 8 DRVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRI 44 (151)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHH
Confidence 345667777777766 5799999998 78999999988
No 104
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=51.61 E-value=17 Score=19.55 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=28.3
Q ss_pred CChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 6 FPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 6 wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
.|+.|-+.|. ++ ..|-.-..||..+ |-+...|+++-
T Consensus 30 Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l 65 (91)
T 2rnj_A 30 LTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHV 65 (91)
T ss_dssp CCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHH
T ss_pred CCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 5666665554 45 5688899999998 88999999987
No 105
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=49.17 E-value=12 Score=16.77 Aligned_cols=10 Identities=10% Similarity=0.335 Sum_probs=7.8
Q ss_pred CChHHHHHHH
Q 037092 6 FPDEEDRLIC 15 (76)
Q Consensus 6 wT~eED~~L~ 15 (76)
||++|.+..+
T Consensus 1 ~s~~eRq~~L 10 (28)
T 3h8k_B 1 WSADERQRML 10 (28)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7888887765
No 106
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=45.12 E-value=43 Score=19.24 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=31.3
Q ss_pred CCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 4 WGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 4 ~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
..+|.|+-..++.++. -|..-..||..+ |.+...|....
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~rw~ 69 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSKIL 69 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHH
Confidence 4689999999999985 588889999988 77777776643
No 107
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=43.57 E-value=41 Score=18.65 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=29.7
Q ss_pred CCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 4 WGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 4 ~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
...|+.|-+.|. ++. .|-.-..||..+ |-+...|+.+-
T Consensus 33 ~~Lt~re~~Vl~-l~~-~G~s~~EIA~~L-~iS~~TV~~~l 70 (99)
T 1p4w_A 33 KRLSPKESEVLR-LFA-EGFLVTEIAKKL-NRSIKTISSQK 70 (99)
T ss_dssp SSCCHHHHHHHH-HHH-HTCCHHHHHHHH-TSCHHHHHHHH
T ss_pred CCCCHHHHHHHH-HHH-cCCCHHHHHHHH-CcCHHHHHHHH
Confidence 356777777664 443 688899999998 78999999876
No 108
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=43.15 E-value=37 Score=19.76 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHH
Q 037092 9 EEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 9 eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw 44 (76)
+-|..|+.+....| -.++.||..+ |-|...|..+.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l 42 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERI 42 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHH
Confidence 44666777777766 5799999998 78999999998
No 109
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=42.78 E-value=22 Score=20.05 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhCCchhhhhhcCC
Q 037092 11 DRLICRLFAISGSRWSVIGAHLP 33 (76)
Q Consensus 11 D~~L~~~~~~~G~~W~~Ia~~~~ 33 (76)
+.+|-+||..|| |...+..++
T Consensus 18 E~ilt~Lv~~YG--W~~L~~~i~ 38 (88)
T 2jvw_A 18 QKLLTELVEHYG--WEELSYMVN 38 (88)
T ss_dssp HHHHHHHHHHTC--HHHHHHHTT
T ss_pred HHHHHHHHHHhC--HHHHHhhcc
Confidence 578899999997 888887764
No 110
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=41.67 E-value=31 Score=16.63 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 11 DRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 11 D~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
+..++.++ ..|-.-..||..+ |-+...|+.+.
T Consensus 3 e~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~ 34 (61)
T 2jpc_A 3 ERQVLKLI-DEGYTNHGISEKL-HISIKTVETHR 34 (61)
T ss_dssp HHHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHH
Confidence 34455563 5688889999999 88999999987
No 111
>2bl8_A Enterocine A immunity protein; enterocin A, ORF2 protein, bacterial protein; HET: FLC; 1.6A {Enterococcus faecium} SCOP: a.29.8.2 PDB: 2bl7_A
Probab=39.86 E-value=23 Score=20.61 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.4
Q ss_pred CCCCCChHHHHHHHHHHHH
Q 037092 2 KPWGFPDEEDRLICRLFAI 20 (76)
Q Consensus 2 ~~~~wT~eED~~L~~~~~~ 20 (76)
++=.||++|+++|++|-..
T Consensus 65 ~~l~ft~~qe~li~~L~~i 83 (103)
T 2bl8_A 65 NKIRFTEYQEELIRNLSEI 83 (103)
T ss_dssp TTCCCCHHHHHHHHHHHHH
T ss_pred ccCCCChHHHHHHHHHHHH
Confidence 3557999999999988665
No 112
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=38.87 E-value=21 Score=19.57 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHH
Q 037092 8 DEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNN 42 (76)
Q Consensus 8 ~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~kn 42 (76)
.+|=..++. |..|...|..+ |=+...|.+
T Consensus 12 r~~l~~lL~-----g~dW~~LA~~L-g~~~~~I~~ 40 (85)
T 1ngr_A 12 REEVEKLLN-----GDTWRHLAGEL-GYQPEHIDS 40 (85)
T ss_dssp THHHHHHSC-----TTHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHhC-----cCCHHHHHHHc-CCCHHHHHH
Confidence 344455554 99999999998 667666655
No 113
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=38.68 E-value=6.5 Score=24.09 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 12 RLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 12 ~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
..++.++...|-+...||..+ |-|...|+.+.
T Consensus 204 r~vl~l~~~~g~s~~EIA~~l-gis~~tV~~~~ 235 (243)
T 1l0o_C 204 RLIVYLRYYKDQTQSEVASRL-GISQVQMSRLE 235 (243)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 344445455566778888887 77777777766
No 114
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=38.45 E-value=24 Score=17.06 Aligned_cols=21 Identities=33% Similarity=0.234 Sum_probs=17.7
Q ss_pred CChHHHHHHHHHHHHhCCchh
Q 037092 6 FPDEEDRLICRLFAISGSRWS 26 (76)
Q Consensus 6 wT~eED~~L~~~~~~~G~~W~ 26 (76)
.|+||-+.|.......|-.-+
T Consensus 22 lt~eE~~~l~~~A~~~g~s~S 42 (51)
T 2ba3_A 22 FSPVEDETIRKKAEDSGLTVS 42 (51)
T ss_dssp ECHHHHHHHHHHHHHHTCCHH
T ss_pred ECHHHHHHHHHHHHHhCCCHH
Confidence 589999999999999996543
No 115
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=37.91 E-value=61 Score=18.98 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHH
Q 037092 8 DEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 8 ~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw 44 (76)
.+-|..|+.+....| -.++.||..+ |=|...|..+.
T Consensus 9 d~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l 45 (162)
T 2p5v_A 9 DKTDIKILQVLQENGRLTNVELSERV-ALSPSPCLRRL 45 (162)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHH
Confidence 345667777777766 5799999998 78999999988
No 116
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=37.87 E-value=53 Score=18.29 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHH----hCCchhhhhhcCCCCCHHHHHHHH
Q 037092 9 EEDRLICRLFAI----SGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 9 eED~~L~~~~~~----~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
+.+..++.+..- -|-+...||..+ |-|...|+++-
T Consensus 22 ~reR~Vi~Lry~l~~~e~~s~~EIA~~l-giS~~tVr~~~ 60 (99)
T 3t72_q 22 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIE 60 (99)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHH-CcCHHHHHHHH
Confidence 334445555443 246799999998 88888888876
No 117
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=37.66 E-value=43 Score=20.71 Aligned_cols=32 Identities=13% Similarity=-0.024 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 12 RLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 12 ~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
+.|+.+-..-|-+|..||..+ |+|..-+-.-.
T Consensus 16 ~~I~~AK~~KGLTwe~IAe~i-G~S~v~vtaa~ 47 (156)
T 1dw9_A 16 DAILLSKAKKDLSFAEIADGT-GLAEAFVTAAL 47 (156)
T ss_dssp HHHHHHHHHTTCCHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHh-CcCHHHHHHHH
Confidence 567777778899999999998 89987665544
No 118
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=37.42 E-value=54 Score=18.24 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=31.5
Q ss_pred CCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 4 WGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 4 ~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
...|.++-..++.++. -|..-..||..+ |.+...|....
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~s~~~ia~~l-gis~~Tv~r~~ 43 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNVSLHEMSRKI-SRSRHCIRVYL 43 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHH
Confidence 4678898888888884 588889999988 78888887644
No 119
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=37.42 E-value=36 Score=19.92 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=20.1
Q ss_pred HHHHHHHhCCchhhhhhcCCCCCHHHHHH
Q 037092 14 ICRLFAISGSRWSVIGAHLPGRTDNETNN 42 (76)
Q Consensus 14 L~~~~~~~G~~W~~Ia~~~~gRt~~~~kn 42 (76)
+-.+....|..|..+|..+ |=++++|..
T Consensus 9 f~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 36 (122)
T 3ezq_B 9 FNVICDNVGKDWRRLARQL-KVSDTKIDS 36 (122)
T ss_dssp HHHHHTTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHh-CCCHHHHHH
Confidence 3344556789999999998 677766554
No 120
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=36.98 E-value=51 Score=17.82 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=29.7
Q ss_pred CCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHH
Q 037092 5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNY 43 (76)
Q Consensus 5 ~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knr 43 (76)
..|.++-..++.++. -|..-..||..+ |.+...|...
T Consensus 17 ~~s~~~r~~i~~~~~-~g~s~~~ia~~l-gis~~Tv~~w 53 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA-DGIRPCVISRQL-RVSHGCVSKI 53 (128)
T ss_dssp CCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHH
Confidence 688999999999885 588888999988 6777777653
No 121
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=36.84 E-value=50 Score=20.99 Aligned_cols=37 Identities=24% Similarity=0.143 Sum_probs=28.4
Q ss_pred CCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 5 ~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
..|+.|-+ ++.++ ..|-.-..||..+ |-+.+.|+.+-
T Consensus 197 ~L~~~ere-vl~L~-~~G~s~~EIA~~L-~iS~~TVk~~l 233 (258)
T 3clo_A 197 ILSEREKE-ILRCI-RKGLSSKEIAATL-YISVNTVNRHR 233 (258)
T ss_dssp SSCHHHHH-HHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred cCCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 34555554 44555 5789999999999 89999999987
No 122
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=36.79 E-value=9.1 Score=21.42 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHH
Q 037092 8 DEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNY 43 (76)
Q Consensus 8 ~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knr 43 (76)
.||=+.|+. ....|..|...|..| |=++..|...
T Consensus 5 r~~v~~ll~-~~~~G~dW~~LA~~L-g~~~~~I~~i 38 (91)
T 2ib1_A 5 QEEVQRLLM-MGEPAKGWQELAGHL-GYQAEAVETM 38 (91)
T ss_dssp HHTTHHHHT-TTCCSSTHHHHHHHH-TCCHHHHHHH
T ss_pred HHHHHHHhc-CCCCCccHHHHHHHc-CCCHHHHHHH
Confidence 355566776 355689999999998 7888777764
No 123
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=36.40 E-value=43 Score=16.76 Aligned_cols=31 Identities=10% Similarity=-0.051 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHH
Q 037092 9 EEDRLICRLFAISGSRWSVIGAHLPGRTDNET 40 (76)
Q Consensus 9 eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~ 40 (76)
-|.+.|..+...+|++.+..|..+ |=+-..+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL 49 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNL 49 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHH
Confidence 477889999999999999999887 4444433
No 124
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=35.42 E-value=32 Score=18.70 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=32.4
Q ss_pred CCChHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHH
Q 037092 5 GFPDEEDRLICRLFAISGS-RWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 5 ~wT~eED~~L~~~~~~~G~-~W~~Ia~~~~gRt~~~~knrw 44 (76)
.+|..-++.|+++....|+ +=-.||+.+.-||+.+|-..-
T Consensus 6 qls~~~ee~I~~fL~~~Gp~~AL~IAK~LGlktAK~VNp~L 46 (72)
T 3eyi_A 6 QFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDL 46 (72)
T ss_dssp CCSSHHHHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHH
T ss_pred hhhhhhHHHHHHHHHHcCCchHHHHHHHhCcchhhhcCHHH
Confidence 4677768888999999995 466899999999999886654
No 125
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=34.73 E-value=63 Score=18.76 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=30.6
Q ss_pred CCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 5 ~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
..|.++-..++.++. -|..-..||..+ |.+...|....
T Consensus 25 ~~s~e~r~~ii~l~~-~G~s~~~IA~~l-gis~~TV~rwl 62 (159)
T 2k27_A 25 PLPEVVRQRIVDLAH-QGVRPCDISRQL-RVSHGCVSKIL 62 (159)
T ss_dssp SSCHHHHHHHHHHHH-HTCCHHHHHHHH-TCCSHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHH
Confidence 678899889998885 588889999988 67777777644
No 126
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=34.24 E-value=55 Score=18.78 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHH
Q 037092 9 EEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 9 eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw 44 (76)
+-|..|+.+....| -.++.||..+ |=+...|..+.
T Consensus 3 ~~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l 38 (150)
T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREI-RIPKATLSYRI 38 (150)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHH-TSCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHH
Confidence 44667777776666 5799999998 78999999998
No 127
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=34.00 E-value=77 Score=19.00 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHH
Q 037092 8 DEEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 8 ~eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw 44 (76)
++-|..|+.+...-| -.++.||..+ |=|...|..+.
T Consensus 16 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~~l 52 (171)
T 2ia0_A 16 DDLDRNILRLLKKDARLTISELSEQL-KKPESTIHFRI 52 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHH
Confidence 345667777777766 5799999998 88999999998
No 128
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=33.78 E-value=49 Score=20.51 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHH
Q 037092 10 EDRLICRLFAISGSRWSVIGAHLPGRTDNETNN 42 (76)
Q Consensus 10 ED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~kn 42 (76)
-+..+-.+....|..|..+|..+ |=++.+|..
T Consensus 97 ~~~~~~~ia~~lg~~Wk~Lar~L-gl~~~~I~~ 128 (191)
T 2gf5_A 97 LCAAFNVICDNVGKDWRRLARQL-KVSDTKIDS 128 (191)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHccchhHHHHHHHc-CCCHHHHHH
Confidence 34556677788899999999998 777776654
No 129
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=33.35 E-value=62 Score=18.69 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHH
Q 037092 9 EEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 9 eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw 44 (76)
+-|..|+.+....| -.++.||..+ |=|...|..+.
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l 43 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQF-GVSPETIHVRV 43 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHH-TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHH
Confidence 44667777777766 5799999998 78999999988
No 130
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=31.94 E-value=38 Score=19.76 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=17.7
Q ss_pred CCCChHHHHHHHHHHHHhC
Q 037092 4 WGFPDEEDRLICRLFAISG 22 (76)
Q Consensus 4 ~~wT~eED~~L~~~~~~~G 22 (76)
|..++.|+.+|.+....+|
T Consensus 99 G~i~~~E~~lLr~ia~~Lg 117 (133)
T 2h5n_A 99 GDIDDNELALWTLISTLCG 117 (133)
T ss_dssp TBCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcC
Confidence 6789999999999999999
No 131
>2guk_A Hypothetical protein PG1857; alpha-beta, alpha-helical bundle, structural genomics, PSI, structure initiative; 1.91A {Porphyromonas gingivalis} SCOP: d.360.1.1
Probab=31.85 E-value=21 Score=21.34 Aligned_cols=11 Identities=36% Similarity=0.465 Sum_probs=9.1
Q ss_pred CCChHHHHHHH
Q 037092 5 GFPDEEDRLIC 15 (76)
Q Consensus 5 ~wT~eED~~L~ 15 (76)
.+|||||-+|=
T Consensus 89 ~lTpEEDFILG 99 (120)
T 2guk_A 89 SLTPEEDFIIG 99 (120)
T ss_dssp GCCHHHHHHHH
T ss_pred hCCcHHHHHHH
Confidence 58999999863
No 132
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=31.73 E-value=50 Score=17.42 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=28.2
Q ss_pred ChHHHHHHHHHHHHhC---C-chhhhhhcCCCCCHHHHHHHH
Q 037092 7 PDEEDRLICRLFAISG---S-RWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 7 T~eED~~L~~~~~~~G---~-~W~~Ia~~~~gRt~~~~knrw 44 (76)
|++-|..|+.+....| . .=..||+.+ |-+...|..+=
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L 52 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVL 52 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHH
Confidence 5677788989999988 3 468899988 56666776664
No 133
>4dth_A VGRG protein; alpha-beta protein, actin cross-linking toxin, G-actin, TOXI; HET: ATP; 1.78A {Vibrio cholerae} PDB: 4dtd_A* 4dtf_A* 4e1c_A* 4e1d_A* 4dtl_A*
Probab=31.53 E-value=39 Score=23.38 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=24.4
Q ss_pred HHHHHHhC---CchhhhhhcC----CCCCHHHHHHHH
Q 037092 15 CRLFAISG---SRWSVIGAHL----PGRTDNETNNYY 44 (76)
Q Consensus 15 ~~~~~~~G---~~W~~Ia~~~----~gRt~~~~knrw 44 (76)
-+|..+|| +.|...+..+ .|=|+..|||-|
T Consensus 239 A~LA~eyGI~In~WDP~sEg~~PnA~GLTDPkVKNAW 275 (396)
T 4dth_A 239 AELAKKFGIYINEWDPMSEQITPNANGLTDPKVKNAW 275 (396)
T ss_dssp HHHHHHHTCCBTTBCGGGGTCCCCSSSTTSHHHHHHH
T ss_pred HHHHHHhCcccCCCChhhhcCCCCcccCCCccccchh
Confidence 35678899 7898776655 689999999999
No 134
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding; 2.20A {Homo sapiens}
Probab=30.92 E-value=41 Score=25.09 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCchhhhhhcCCCCCHHHHHH
Q 037092 11 DRLICRLFAISGSRWSVIGAHLPGRTDNETNN 42 (76)
Q Consensus 11 D~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~kn 42 (76)
|..|..+....|..|..+|..| |=++.+|.+
T Consensus 498 d~~L~~Ia~~LG~DWk~LAr~L-G~s~~dId~ 528 (581)
T 4d8o_A 498 EERLAYIADHLGFSWTELAREL-DFTEEQIHQ 528 (581)
T ss_dssp CHHHHHHHHHHTTHHHHHHHHT-TCCHHHHHH
T ss_pred hhHHHHHHHhcccCHHHHHHHc-CCCHHHHHH
Confidence 5677888899999999999998 666665544
No 135
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=30.83 E-value=67 Score=17.28 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHH
Q 037092 9 EEDRLICRLFAISGSRWSVIGAHLPGRTDNETNN 42 (76)
Q Consensus 9 eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~kn 42 (76)
-|...|.++...+|++-+..|+.+ |=+-..+..
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~r 83 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTA 83 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 477888899999999899999887 555555543
No 136
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=30.34 E-value=75 Score=17.69 Aligned_cols=42 Identities=10% Similarity=-0.024 Sum_probs=31.0
Q ss_pred CCCCCChHHHHHHHHHHHHhCCchh-hhhhcCCCCCHHHHHHHH
Q 037092 2 KPWGFPDEEDRLICRLFAISGSRWS-VIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 2 ~~~~wT~eED~~L~~~~~~~G~~W~-~Ia~~~~gRt~~~~knrw 44 (76)
++..+|.|.-..++.++...|..-. .||..| |=+...|.+..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~-gvs~stl~~~~ 46 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRF-NIPPSTLSTIL 46 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHH-TCCHHHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcHHHHHHHh-CCCHHHHHHHH
Confidence 3567999999999999977776554 789887 55666665543
No 137
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=27.01 E-value=90 Score=17.54 Aligned_cols=34 Identities=15% Similarity=0.362 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHH
Q 037092 10 EDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 10 ED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw 44 (76)
-|..|+.+....| -.++.||..+ |-+...|..+.
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l 39 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL-GISETAVRKRV 39 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHH
Confidence 4556666666656 5799999999 88999999988
No 138
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=25.95 E-value=1.3e+02 Score=19.10 Aligned_cols=41 Identities=10% Similarity=0.061 Sum_probs=31.8
Q ss_pred CCCCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 3 PWGFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 3 ~~~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
+..+|+-|....+.....+|-.=..||..+ |.+...|.++-
T Consensus 115 R~~L~~~E~a~~~~~l~~~g~t~~~iA~~l-G~s~~~V~~~l 155 (230)
T 1vz0_A 115 REDLSPVEEARGYQALLEMGLTQEEVARRV-GKARSTVANAL 155 (230)
T ss_dssp STTCCHHHHHHHHHHHHHTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 457888888776655558887778899988 88998898864
No 139
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=25.81 E-value=62 Score=19.26 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=18.6
Q ss_pred CCCChHHHHHHHHHHHHhCCc
Q 037092 4 WGFPDEEDRLICRLFAISGSR 24 (76)
Q Consensus 4 ~~wT~eED~~L~~~~~~~G~~ 24 (76)
|..++.|+..|.++...+|=.
T Consensus 109 G~~~~~E~~~L~~iA~~Lgls 129 (161)
T 2ou3_A 109 GELHEKEKAKIRKMATILGIK 129 (161)
T ss_dssp SSCCHHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHcCCC
Confidence 678999999999999999943
No 140
>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044}
Probab=23.24 E-value=48 Score=19.36 Aligned_cols=19 Identities=21% Similarity=0.294 Sum_probs=17.2
Q ss_pred CCCChHHHHHHHHHHHHhC
Q 037092 4 WGFPDEEDRLICRLFAISG 22 (76)
Q Consensus 4 ~~wT~eED~~L~~~~~~~G 22 (76)
|..+++|+..|.++...+|
T Consensus 125 G~~~~~E~~~L~~ia~~Lg 143 (153)
T 2jxu_A 125 GNFDDDEKSAVREIARSLG 143 (153)
T ss_dssp TSCSSTHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 6788999999999999988
No 141
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=22.98 E-value=74 Score=18.18 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=19.9
Q ss_pred CCChHHHHHHHHHHHHhCCchhh
Q 037092 5 GFPDEEDRLICRLFAISGSRWSV 27 (76)
Q Consensus 5 ~wT~eED~~L~~~~~~~G~~W~~ 27 (76)
.|+.+|...|.+++..+|+.-+.
T Consensus 31 Gf~~~er~~l~~~i~~~GG~~~~ 53 (112)
T 3l46_A 31 GFSDEEKTNMEEMTEMQGGKYLP 53 (112)
T ss_dssp SCCHHHHHHHHHHHHHTTCEECC
T ss_pred CCCHHHHHHHHHHHHHcCCEECc
Confidence 48999999999999999987543
No 142
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=22.45 E-value=1e+02 Score=16.60 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHH
Q 037092 8 DEEDRLICRLFAISGSRWSVIGAHLPGRTDNETN 41 (76)
Q Consensus 8 ~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~k 41 (76)
.-|.+.|.++...+|.+.+..|+.+ |=+...+.
T Consensus 40 ~~Er~~I~~aL~~~~GN~s~AA~~L-GISR~TLy 72 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRNVSETARRL-NMHRRTLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHH-TSCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHH
Confidence 3467888899999999899988877 55544443
No 143
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=22.43 E-value=1.2e+02 Score=17.32 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHH
Q 037092 9 EEDRLICRLFAISG-SRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 9 eED~~L~~~~~~~G-~~W~~Ia~~~~gRt~~~~knrw 44 (76)
+-|..|+.+....| -..+.||..+ |-+...|..+-
T Consensus 5 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l 40 (144)
T 2cfx_A 5 QIDLNIIEELKKDSRLSMRELGRKI-KLSPPSVTERV 40 (144)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHH
Confidence 44667777777766 5699999998 78999999887
No 144
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=21.20 E-value=1.3e+02 Score=17.50 Aligned_cols=45 Identities=9% Similarity=0.002 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHH-----HhCCchhhhhhcCCCCCHHHHHHHHhhchhhhHH
Q 037092 7 PDEEDRLICRLFA-----ISGSRWSVIGAHLPGRTDNETNNYYRNTKLKRKH 53 (76)
Q Consensus 7 T~eED~~L~~~~~-----~~G~~W~~Ia~~~~gRt~~~~knrw~~~~l~~~~ 53 (76)
|+.|=-+|+.+.. ..++.-..||..+ |-+..+|-..- ...+.+.+
T Consensus 31 s~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~-~~s~~~v~~~L-~~L~~KGl 80 (135)
T 2v79_A 31 NETELILLLKIKMHLEKGSYFPTPNQLQEGM-SISVEECTNRL-RMFIQKGF 80 (135)
T ss_dssp CHHHHHHHHHHHHHHTTTCCSCCHHHHHTTS-SSCHHHHHHHH-HHHHHHTS
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH-CcCHHHHHHHH-HHHHHCCC
Confidence 5566666777766 3557789999998 88999988876 55555443
No 145
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=21.15 E-value=58 Score=19.36 Aligned_cols=19 Identities=11% Similarity=0.059 Sum_probs=16.6
Q ss_pred CCCChHHHHHHHHHHHHhC
Q 037092 4 WGFPDEEDRLICRLFAISG 22 (76)
Q Consensus 4 ~~wT~eED~~L~~~~~~~G 22 (76)
..|+++|-++|..+....|
T Consensus 131 r~w~~~ei~ll~~lA~ql~ 149 (171)
T 4glq_A 131 RQWQEIEIDQFSELASTGS 149 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 4799999999998888876
No 146
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=20.35 E-value=62 Score=20.69 Aligned_cols=13 Identities=38% Similarity=0.501 Sum_probs=11.0
Q ss_pred CCCChHHHHHHHH
Q 037092 4 WGFPDEEDRLICR 16 (76)
Q Consensus 4 ~~wT~eED~~L~~ 16 (76)
|.||++|-+.+.+
T Consensus 184 GGfs~~Ei~~~~~ 196 (228)
T 1v6z_A 184 GGFAEEEVALLEA 196 (228)
T ss_dssp TCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 8899999988754
No 147
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=20.34 E-value=74 Score=14.16 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=27.3
Q ss_pred CCChHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHH
Q 037092 5 GFPDEEDRLICRLFAISGSRWSVIGAHLPGRTDNETNNYY 44 (76)
Q Consensus 5 ~wT~eED~~L~~~~~~~G~~W~~Ia~~~~gRt~~~~knrw 44 (76)
..|+++-..++.++. -|..-..||..+ |-+...|....
T Consensus 5 ~~~~~~~~~i~~l~~-~g~s~~~ia~~l-gvs~~Tv~r~l 42 (52)
T 1jko_C 5 AINKHEQEQISRLLE-KGHPRQQLAIIF-GIGVSTLYRYF 42 (52)
T ss_dssp SSCTTHHHHHHHHHH-TTCCHHHHHHTT-SCCHHHHHHHS
T ss_pred CCCHHHHHHHHHHHH-cCCCHHHHHHHH-CCCHHHHHHHH
Confidence 467777777777765 477788999988 67776666544
Done!