Query 037093
Match_columns 282
No_of_seqs 192 out of 1187
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 14:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.3E-23 4.4E-28 155.7 5.7 60 28-87 2-62 (63)
2 1u3e_M HNH homing endonuclease 94.3 0.0004 1.4E-08 58.7 -7.9 64 2-69 83-146 (174)
3 3igm_B PF14_0633 protein; AP2 86.8 0.28 9.5E-06 37.8 1.9 28 24-53 3-31 (77)
4 1z1b_A Integrase; protein-DNA 77.0 2.5 8.5E-05 36.9 4.5 41 31-75 15-55 (356)
5 3jtz_A Integrase; four strande 65.3 12 0.0004 28.4 5.4 44 32-75 28-75 (88)
6 3ju0_A Phage integrase; four s 44.8 33 0.0011 27.0 5.0 44 32-75 28-75 (108)
7 2ftc_I Mitochondrial ribosomal 41.0 35 0.0012 27.4 4.7 35 40-76 80-114 (118)
8 1x60_A Sporulation-specific N- 36.3 21 0.00071 25.4 2.4 23 51-73 46-68 (79)
9 1uta_A FTSN, MSGA, cell divisi 36.3 25 0.00087 25.3 2.9 25 49-73 44-68 (81)
10 3r8s_M 50S ribosomal protein L 26.3 63 0.0022 26.7 4.0 35 40-77 92-126 (136)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.88 E-value=1.3e-23 Score=155.71 Aligned_cols=60 Identities=65% Similarity=1.105 Sum_probs=56.6
Q ss_pred ceeEEEeCCCCcEEEEEeCCCC-CceEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 037093 28 RFLGVRRRPWGRYAAEIRDPST-KERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYS 87 (282)
Q Consensus 28 ~YRGV~~r~~GKW~A~I~~~~~-gKri~LGtFdTeEEAArAYD~AAikl~G~~A~lNFp~s 87 (282)
+||||+++++|||+|+|+++.. +++||||+|+|+||||+|||+|+++++|.++++|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 7999999889999999999764 68999999999999999999999999999999999964
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=94.32 E-value=0.0004 Score=58.69 Aligned_cols=64 Identities=8% Similarity=-0.041 Sum_probs=41.4
Q ss_pred CCCChhHhhhhhhhcCCCCCCCCCCCceeEEEeCCCCcEEEEEeCCCCCceEeecCCCCHHHHHHHHH
Q 037093 2 NSSSSTKIKKKQTQQGQDTTGGSNGNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYD 69 (282)
Q Consensus 2 ~s~Ss~~~~~~q~rq~~~~~~~~ntS~YRGV~~r~~GKW~A~I~~~~~gKri~LGtFdTeEEAArAYD 69 (282)
|.+++++++...++...+...+... ..+||.+.+.++|.+.|.. . +.++||.|++.+|||++|.
T Consensus 83 n~~~NL~~~t~~eN~~~~~~~~~~~-~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 83 NLSTNLRWVTQKINVENQMSRGTLN-VSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp CCGGGEEEECHHHHHHHHHHHTCCC-CHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred CCHHHcEECCHHHHhhcccccCccc-ceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 3456666666655544332222221 2466655334679999987 4 6778999999999999964
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=86.75 E-value=0.28 Score=37.77 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=21.6
Q ss_pred CCCCceeEEEeCC-CCcEEEEEeCCCCCceE
Q 037093 24 SNGNRFLGVRRRP-WGRYAAEIRDPSTKERH 53 (282)
Q Consensus 24 ~ntS~YRGV~~r~-~GKW~A~I~~~~~gKri 53 (282)
..+|+|+||++.+ .+.|.|+-.+ ++++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 4578999999775 6999999987 55443
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=77.04 E-value=2.5 Score=36.92 Aligned_cols=41 Identities=20% Similarity=0.079 Sum_probs=30.7
Q ss_pred EEEeCCCCcEEEEEeCCCCCceEeecCCCCHHHHHHHHHHHHHHh
Q 037093 31 GVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSM 75 (282)
Q Consensus 31 GV~~r~~GKW~A~I~~~~~gKri~LGtFdTeEEAArAYD~AAikl 75 (282)
||++++.|+|+.+... .||++.+|. |.+||..+..++...+
T Consensus 15 ~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5777778899988765 778899996 8888877766554443
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=65.32 E-value=12 Score=28.44 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=30.7
Q ss_pred EEeCCCC--cEEEEEeCCCCCceEeecCCC--CHHHHHHHHHHHHHHh
Q 037093 32 VRRRPWG--RYAAEIRDPSTKERHWLGTFD--TAEEAALAYDRAARSM 75 (282)
Q Consensus 32 V~~r~~G--KW~A~I~~~~~gKri~LGtFd--TeEEAArAYD~AAikl 75 (282)
|+-.+.| .|+-+.+...+.+++-||.|. |.++|...-+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3344444 498888874455678999997 6788877777766555
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=44.83 E-value=33 Score=26.95 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=29.9
Q ss_pred EEeCCCC--cEEEEEeCCCCCceEeecCCC--CHHHHHHHHHHHHHHh
Q 037093 32 VRRRPWG--RYAAEIRDPSTKERHWLGTFD--TAEEAALAYDRAARSM 75 (282)
Q Consensus 32 V~~r~~G--KW~A~I~~~~~gKri~LGtFd--TeEEAArAYD~AAikl 75 (282)
|+-.+.| .|.-+.+...+.+++-||.|. |.++|...-+++...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 3334444 398888874445678999997 5778777766665555
No 7
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=41.03 E-value=35 Score=27.44 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=29.7
Q ss_pred EEEEEeCCCCCceEeecCCCCHHHHHHHHHHHHHHhc
Q 037093 40 YAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMR 76 (282)
Q Consensus 40 W~A~I~~~~~gKri~LGtFdTeEEAArAYD~AAikl~ 76 (282)
|+|+|.. +..-+-++...+++.|..|..+|+.+|=
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 9999986 6666677777889999999999998874
No 8
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=36.35 E-value=21 Score=25.42 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=18.5
Q ss_pred ceEeecCCCCHHHHHHHHHHHHH
Q 037093 51 ERHWLGTFDTAEEAALAYDRAAR 73 (282)
Q Consensus 51 Kri~LGtFdTeEEAArAYD~AAi 73 (282)
-|+++|.|.+.++|.++-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 46888999999999988766544
No 9
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=36.31 E-value=25 Score=25.33 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=19.5
Q ss_pred CCceEeecCCCCHHHHHHHHHHHHH
Q 037093 49 TKERHWLGTFDTAEEAALAYDRAAR 73 (282)
Q Consensus 49 ~gKri~LGtFdTeEEAArAYD~AAi 73 (282)
.--||.+|-|.+.++|.++-++...
T Consensus 44 ~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 44 GWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp SSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHH
Confidence 3457888999999999988766554
No 10
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=26.32 E-value=63 Score=26.68 Aligned_cols=35 Identities=23% Similarity=0.063 Sum_probs=28.8
Q ss_pred EEEEEeCCCCCceEeecCCCCHHHHHHHHHHHHHHhcC
Q 037093 40 YAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRG 77 (282)
Q Consensus 40 W~A~I~~~~~gKri~LGtFdTeEEAArAYD~AAikl~G 77 (282)
|+|+|.. +..-+-++. .+++.|..|..+|+.+|=+
T Consensus 92 wva~Vk~--G~ilfEi~g-~~~~~A~eAlr~a~~KLP~ 126 (136)
T 3r8s_M 92 WVALIQP--GKVLYEMDG-VPEELAREAFKLAAAKLPI 126 (136)
T ss_dssp EEEEECT--TCEEEEEES-SCHHHHHHHHHHHHTTCSS
T ss_pred EEEEECC--CCEEEEEeC-CCHHHHHHHHHHHHhcCCC
Confidence 9999986 666667777 4999999999999988643
Done!