BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037095
(334 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=nxt3 PE=1 SV=1
Length = 434
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 5 ADSSSALSPQV----VGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTI 60
A++++ L P + +G FV++YY L++ P+ +H FY + S + D+ S++
Sbjct: 3 AENATLLEPVLGKDEIGWMFVQEYYTYLNKEPNRLHCFYTKKSTLIHGDEGESISLCHGQ 62
Query: 61 KEINDMIVSLDYQNYNVQIFSADAQASYDNGLTVLVTGCLIGKDNVRRKFTQSFFLAPQD 120
+EI++ I+ LD+QN V I + D+ AS + G+ + V G + K + RKF Q+FFLA Q
Sbjct: 63 QEIHNKILDLDFQNCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQP 122
Query: 121 KGYFVLNDILRYVDE 135
GYFVLNDI R++ E
Sbjct: 123 NGYFVLNDIFRFLRE 137
>sp|P97855|G3BP1_MOUSE Ras GTPase-activating protein-binding protein 1 OS=Mus musculus
GN=G3bp1 PE=1 SV=1
Length = 465
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 78/131 (59%), Gaps = 6/131 (4%)
Query: 12 SPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRP--DQSGS-MTSVTTIKEINDMIV 68
SP +VG FV QYY +L+Q PD++HRFY ++S + D +G +V KEI+ ++
Sbjct: 7 SPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQKEIHRKVM 66
Query: 69 SLDYQNYNVQIFSADAQASYDNGLTVLVTGCLIGKDNVRRKFTQSFFLAPQDK---GYFV 125
S ++ N + +I DA A+ ++G+ V V G L + R+F Q+F LAP+ ++V
Sbjct: 67 SQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYV 126
Query: 126 LNDILRYVDEI 136
NDI RY DE+
Sbjct: 127 HNDIFRYQDEV 137
>sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens
GN=G3BP1 PE=1 SV=1
Length = 466
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 77/131 (58%), Gaps = 6/131 (4%)
Query: 12 SPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRP--DQSGS-MTSVTTIKEINDMIV 68
SP +VG FV QYY +L+Q PD++HRFY ++S D +G +V KEI+ ++
Sbjct: 7 SPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVM 66
Query: 69 SLDYQNYNVQIFSADAQASYDNGLTVLVTGCLIGKDNVRRKFTQSFFLAPQDK---GYFV 125
S ++ N + +I DA A+ ++G+ V V G L + R+F Q+F LAP+ ++V
Sbjct: 67 SQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYV 126
Query: 126 LNDILRYVDEI 136
NDI RY DE+
Sbjct: 127 HNDIFRYQDEV 137
>sp|Q5RB87|G3BP1_PONAB Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii
GN=G3BP1 PE=2 SV=1
Length = 466
Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 77/131 (58%), Gaps = 6/131 (4%)
Query: 12 SPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRP--DQSGS-MTSVTTIKEINDMIV 68
SP +VG FV QYY +L+Q PD++HRFY ++S D +G +V KEI+ ++
Sbjct: 7 SPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVM 66
Query: 69 SLDYQNYNVQIFSADAQASYDNGLTVLVTGCLIGKDNVRRKFTQSFFLAPQDK---GYFV 125
S ++ N + +I DA A+ ++G+ V V G L + R+F Q+F LAP+ ++V
Sbjct: 67 SQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYV 126
Query: 126 LNDILRYVDEI 136
NDI RY DE+
Sbjct: 127 HNDIFRYQDEV 137
>sp|Q32LC7|G3BP1_BOVIN Ras GTPase-activating protein-binding protein 1 OS=Bos taurus
GN=G3BP PE=2 SV=1
Length = 465
Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 77/131 (58%), Gaps = 6/131 (4%)
Query: 12 SPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRP--DQSGS-MTSVTTIKEINDMIV 68
SP +VG FV QYY +L+Q PD++HRFY ++S D +G +V KEI+ ++
Sbjct: 7 SPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVM 66
Query: 69 SLDYQNYNVQIFSADAQASYDNGLTVLVTGCLIGKDNVRRKFTQSFFLAPQDK---GYFV 125
S ++ N + +I DA A+ ++G+ V V G L + R+F Q+F LAP+ ++V
Sbjct: 67 SQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYV 126
Query: 126 LNDILRYVDEI 136
NDI RY DE+
Sbjct: 127 HNDIFRYQDEV 137
>sp|P97379|G3BP2_MOUSE Ras GTPase-activating protein-binding protein 2 OS=Mus musculus
GN=G3bp2 PE=1 SV=2
Length = 482
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 143/356 (40%), Gaps = 49/356 (13%)
Query: 12 SPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRP--DQSGS-MTSVTTIKEINDMIV 68
SP +VG FV QYY +L++ P+ +HRFY +S D SG +V +I+ ++
Sbjct: 7 SPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVL 66
Query: 69 SLDYQNYNVQIFSADAQASYDNGLTVLVTGCLIGKDNVRRKFTQSFFLAPQDK---GYFV 125
SL++ + +I DA A+ +G+ V V G L RKF Q+F LAP+ ++V
Sbjct: 67 SLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYV 126
Query: 126 LNDILRYVDEIDDKDGSAGLTINDVDENAPAAPLTPDPEPTQVPNNTVLNHVNPVNEDAK 185
ND+ RY DE+ ++ + P PEP Q N+ +PV +
Sbjct: 127 HNDMFRYEDEVFGDSEPELDEESEDEVEEEQEDRQPSPEPVQENANSAYYDAHPVTNGIE 186
Query: 186 SSNEASHPLDNGQVLVAEKAVAADPPVVASQNDAR-------PAKEPAASKNEEEAPKK- 237
E S + K P V + P EPA+ +E PK
Sbjct: 187 EPLEESSHEPEPEPESETKTEELKPQVEEKHLEELEEKSATPPPAEPASLP--QEPPKAF 244
Query: 238 SFASVVHDLNKSKAPFNVIMRA---PSLKT-VESSRATAAPKVAAPP------------- 280
S+ASV +K+ P + + P +K V R A P+V + P
Sbjct: 245 SWASVT---SKNLPPSGTVSSSGIPPHVKAPVSQPRVDAKPEVQSQPPRVREQRPRERPG 301
Query: 281 -------------SSNSSLERNNDHAAKGHSIFVGNLPDSATVDQLKLIFEQFGPV 323
N S R H +FVGNLP ++LK F FG V
Sbjct: 302 FPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNV 357
>sp|Q5R9L3|G3BP2_PONAB Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii
GN=G3BP2 PE=2 SV=1
Length = 482
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 144/356 (40%), Gaps = 49/356 (13%)
Query: 12 SPQVVGNAFVEQYYCILHQNPDVVHRFY-QESSMV-SRPDQSGS-MTSVTTIKEINDMIV 68
SP +VG FV QYY +L++ P+ +HRFY + SS V D SG +V +I+ ++
Sbjct: 7 SPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVL 66
Query: 69 SLDYQNYNVQIFSADAQASYDNGLTVLVTGCLIGKDNVRRKFTQSFFLAPQDK---GYFV 125
SL++ + +I DA A+ +G+ V V G L RKF Q+F LAP+ ++V
Sbjct: 67 SLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYV 126
Query: 126 LNDILRYVDEIDDKDGSAGLTINDVDENAPAAPLTPDPEPTQVPNNTVLNHVNPVNEDAK 185
ND+ RY DE+ ++ + P PEP Q N+ +PV +
Sbjct: 127 HNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIE 186
Query: 186 SSNEASHPLDNGQVLVAEKAVAADPPVVASQNDAR-------PAKEPAASKNEEEAPKK- 237
E S + K P V + P EP + +E PK
Sbjct: 187 EPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLP--QEPPKAF 244
Query: 238 SFASVVHDLNKSKAPFNVIMRA---PSLKT-VESSRATAAPKVAAPP------------- 280
S+ASV +K+ P + + P +K V R A P+V + P
Sbjct: 245 SWASVT---SKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERPG 301
Query: 281 -------------SSNSSLERNNDHAAKGHSIFVGNLPDSATVDQLKLIFEQFGPV 323
N S R H +FVGNLP ++LK F FG V
Sbjct: 302 FPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNV 357
>sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens
GN=G3BP2 PE=1 SV=2
Length = 482
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 144/356 (40%), Gaps = 49/356 (13%)
Query: 12 SPQVVGNAFVEQYYCILHQNPDVVHRFY-QESSMV-SRPDQSGS-MTSVTTIKEINDMIV 68
SP +VG FV QYY +L++ P+ +HRFY + SS V D SG +V +I+ ++
Sbjct: 7 SPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVL 66
Query: 69 SLDYQNYNVQIFSADAQASYDNGLTVLVTGCLIGKDNVRRKFTQSFFLAPQDK---GYFV 125
SL++ + +I DA A+ +G+ V V G L RKF Q+F LAP+ ++V
Sbjct: 67 SLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYV 126
Query: 126 LNDILRYVDEIDDKDGSAGLTINDVDENAPAAPLTPDPEPTQVPNNTVLNHVNPVNEDAK 185
ND+ RY DE+ ++ + P PEP Q N+ +PV +
Sbjct: 127 HNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIE 186
Query: 186 SSNEASHPLDNGQVLVAEKAVAADPPVVASQNDAR-------PAKEPAASKNEEEAPKK- 237
E S + K P V + P EP + +E PK
Sbjct: 187 EPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLP--QEPPKAF 244
Query: 238 SFASVVHDLNKSKAPFNVIMRA---PSLKT-VESSRATAAPKVAAPP------------- 280
S+ASV +K+ P + + P +K V R A P+V + P
Sbjct: 245 SWASVT---SKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERPG 301
Query: 281 -------------SSNSSLERNNDHAAKGHSIFVGNLPDSATVDQLKLIFEQFGPV 323
N S R H +FVGNLP ++LK F FG V
Sbjct: 302 FPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNV 357
>sp|Q86HW7|NTF2_DICDI Nuclear transport factor 2 OS=Dictyostelium discoideum GN=nutf2
PE=1 SV=1
Length = 127
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 10 ALSPQVVG--NAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQ--SGSMTSVTTIKEIND 65
++ PQVVG FVE YY I N + + YQ+ + ++ + SG+ I
Sbjct: 3 SVDPQVVGVGKQFVEHYYGIFDSNRAGLTQIYQQQTTLTWEGKFLSGA-------DAIVK 55
Query: 66 MIVSLDYQNYNVQIFSADAQASYDNGLTVLVTGCLI--GKDNVRRKFTQSFFLAPQDKGY 123
IV L +Q N +I S D Q +Y G+ + VTG LI G+ + KF Q F LA + +
Sbjct: 56 HIVELPFQQTNRKINSIDCQQTYQPGIMITVTGTLIIDGEAKNQLKFVQVFNLASNNGSF 115
Query: 124 FVLNDILRYV 133
++ND R V
Sbjct: 116 LLINDFFRLV 125
>sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2
SV=1
Length = 126
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 9 SALSPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIV 68
S + P V AFVE YY N + YQE+SM++ Q + ++ I +
Sbjct: 2 SQMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQ-----KIQGVQSIVAKLT 56
Query: 69 SLDYQNYNVQIFSADAQASY-DNGLTVLVTGCL-IGKDNVRRKFTQSFFLAPQDKG-YFV 125
SL +Q I + D Q S +G+ V V+G L + + KF+Q F L P +G ++V
Sbjct: 57 SLPFQQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYV 116
Query: 126 LNDILR 131
NDI R
Sbjct: 117 FNDIFR 122
>sp|Q8NJ52|NTF2_DAVTA Nuclear transport factor 2 OS=Davidiella tassiana GN=NTF2 PE=1 SV=1
Length = 125
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Query: 16 VGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNY 75
+ F E YY + + Y+E+SM++ +QS + + + ++ + L +Q
Sbjct: 7 IAQQFTEFYYKTFDTDRAQLAPLYRENSMLTF-EQSPFLGTANIVGKLQE----LPFQRI 61
Query: 76 NVQIFSADAQASYDNG-LTVLVTGCLIGKDNVR-RKFTQSFFLAPQDKGYFVLNDILRYV 133
Q+ + DAQ S ++G + V+V+G L+ ++ R +TQ+F L P D Y+V ND+ R V
Sbjct: 62 EHQVATVDAQPSNESGGILVVVSGALLVEEERRPMSYTQTFQLLPADGAYYVFNDVFRLV 121
>sp|Q6CQX4|NTF2_KLULA Nuclear transport factor 2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=NTF2 PE=3 SV=1
Length = 125
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 16 VGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNY 75
+ F E YY + + Y+E SM++ T + K+I + +VSL +Q
Sbjct: 8 LAQQFTEFYYNQFDSDRTQLGNLYREQSMLT-----FETTQLQGAKDIVEKLVSLPFQKV 62
Query: 76 NVQIFSADAQASYDNG-LTVLVTG-CLIGKDNVRRKFTQSFFLAPQDKGYFVLNDILR 131
+I + DAQ + NG + V++TG LI ++ ++F+Q F L P+ Y+V NDI R
Sbjct: 63 AHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYNDIFR 120
>sp|Q96VN3|NTF2_EMENI Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ntf2 PE=3
SV=1
Length = 125
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 14 QVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQ 73
Q + FV YY N + Y++ SM++ +++ + I + + SL +Q
Sbjct: 5 QSIAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTF-----ETSAIQGVAGIIEKLTSLPFQ 59
Query: 74 NYNVQIFSADAQASYDNG-LTVLVTG-CLIGKDNVRRKFTQSFFLAPQDKG-YFVLNDIL 130
Q+ + DAQ S ++G + VLVTG L+ ++ +TQ+F L P G YFVLND+
Sbjct: 60 KVQHQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVF 119
Query: 131 RYV 133
R +
Sbjct: 120 RLI 122
>sp|Q75AA5|NTF2_ASHGO Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NTF2 PE=3 SV=1
Length = 125
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Query: 9 SALSPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIV 68
SAL+ Q F E YY + + Y++ SM++ + + K+I + +V
Sbjct: 6 SALAQQ-----FTEFYYNQFDTDRSQLGNLYRDQSMLT-----FETSQLQGAKDIVEKLV 55
Query: 69 SLDYQNYNVQIFSADAQASYDNG-LTVLVTG-CLIGKDNVRRKFTQSFFLAPQDKGYFVL 126
SL +Q +I + DAQ + NG + V++TG LI + ++F+Q F L P+ Y+V
Sbjct: 56 SLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMPEGNSYYVF 115
Query: 127 NDILR 131
NDI R
Sbjct: 116 NDIFR 120
>sp|Q6FRC6|NTF2_CANGA Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NTF2 PE=3
SV=1
Length = 125
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 16 VGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNY 75
+ F E YY + + Y++ SM++ + + K I + +VSL +Q
Sbjct: 8 LAQQFTEFYYNQFDSDRSQLGNLYRDESMLT-----FETSQLQGAKSIVEKLVSLPFQKV 62
Query: 76 NVQIFSADAQASYDNG-LTVLVTGCLIGKDNVR-RKFTQSFFLAPQDKGYFVLNDILR 131
+I + DAQ + NG + V++TG L+ D ++F+Q F L P Y+V NDI R
Sbjct: 63 AHRITTLDAQPASPNGDVLVMITGDLLIDDEQNPQRFSQVFHLIPDGNSYYVFNDIFR 120
>sp|Q6BWC0|NTF2_DEBHA Nuclear transport factor 2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=NTF2 PE=3 SV=1
Length = 124
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 16 VGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNY 75
V + F YY + + Y+E SM++ + + K+I + +VSL +Q
Sbjct: 8 VASEFCNFYYQQFDSDRTQLGNLYREQSMLTF-----ETSQLQGAKDIVEKLVSLPFQKV 62
Query: 76 NVQIFSADAQASYDNG-LTVLVTGCLIGKDNVR-RKFTQSFFLAPQDKGYFVLNDILR 131
+I + DAQ NG + V+VTG LI D ++++Q F L P Y+V NDI R
Sbjct: 63 AHRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIPDGNSYYVFNDIFR 120
>sp|P33331|NTF2_YEAST Nuclear transport factor 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NTF2 PE=1 SV=2
Length = 125
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 10 ALSPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVS 69
+L + F + YY + + Y+ SM++ + + K+I + +VS
Sbjct: 2 SLDFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLT-----FETSQLQGAKDIVEKLVS 56
Query: 70 LDYQNYNVQIFSADAQASYDNG-LTVLVTG-CLIGKDNVRRKFTQSFFLAPQDKGYFVLN 127
L +Q +I + DAQ + NG + V++TG LI ++ ++F+Q F L P Y+V N
Sbjct: 57 LPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFN 116
Query: 128 DILR 131
DI R
Sbjct: 117 DIFR 120
>sp|Q9XJ54|NTF2_ORYSJ Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2
PE=2 SV=1
Length = 122
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 16 VGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNY 75
V AFVE YY N + YQ+ SM++ Q I + SL +
Sbjct: 6 VAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQ-----QFLGAAAIAGKLGSLPFAQC 60
Query: 76 NVQIFSADAQASY-DNGLTVLVTGCL-IGKDNVRRKFTQSFFLAPQDKGYFVLNDILR 131
+ I + D Q S G+ V V+G L G D KF+Q F L P ++V ND+ R
Sbjct: 61 HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQNDMFR 118
>sp|Q10100|NTF2_SCHPO Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ntf2 PE=3 SV=2
Length = 123
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 16 VGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNY 75
+ F + YY + + Y+E SM+S G+ T K I + +VSL +Q
Sbjct: 7 LATQFTQFYYQTFDSDRSQLSSLYREESMLSFE---GAQLQGT--KAIVEKLVSLPFQRV 61
Query: 76 NVQIFSADAQASYDNG-LTVLVTG-CLIGKDNVRRKFTQSFFLAPQDKGYFVLNDILR 131
+I + DAQ + G + V+VTG L+ ++ + ++++Q F L + Y+VLND+ R
Sbjct: 62 QHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDLFR 119
>sp|Q9P926|NTF2_CANAX Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1
Length = 124
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 16 VGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNY 75
V F YY + + Y+ SM++ + + ++I + + SL +Q
Sbjct: 8 VATEFCNFYYNQFDSDRSQLGNLYRNESMLTFE-----TSQLQGARDIVEKLASLPFQKV 62
Query: 76 NVQIFSADAQASYDNG-LTVLVTG-CLIGKDNVRRKFTQSFFLAPQDKGYFVLNDILR 131
+I + DAQ + NG + V+VTG LI ++ ++++Q F L P + Y+V NDI R
Sbjct: 63 AHRISTLDAQPASANGDILVMVTGELLIDEEQNAQRYSQVFHLIPDNGSYYVFNDIFR 120
>sp|P87102|NTF2_NEUCR Nuclear transport factor 2 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ntf-2 PE=2 SV=1
Length = 124
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 16 VGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNY 75
+ FV YY + + Y+++SM++ + + S+ + + I + + SL +Q
Sbjct: 8 IATQFVAHYYSTFDSDRKNLAGLYRDNSMLTF-EGAQSLGA----QGITEKLTSLPFQKV 62
Query: 76 NVQIFSADAQASYDNGLTVLVTGCLIGKDNVR-RKFTQSFFLAPQDKG-YFVLNDILRYV 133
+ DAQ + G+ +LVTG LI D R ++Q+F L+ G +FV NDI + V
Sbjct: 63 KHEYGPPDAQPTATGGIIILVTGQLIVDDEQRPLGYSQAFQLSQDASGQWFVFNDIFKLV 122
>sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE=1 SV=4
Length = 750
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 296 GHSIFVGNLPDSATVDQLKLIFEQFGPVK 324
G ++FVG LP SA DQL+ +F Q GPVK
Sbjct: 3 GLTLFVGRLPPSARSDQLEELFSQVGPVK 31
>sp|P53741|BRE5_YEAST UBP3-associated protein BRE5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRE5 PE=1 SV=1
Length = 515
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 61/140 (43%), Gaps = 16/140 (11%)
Query: 10 ALSPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTS----------VTT 59
++ Q + AF++ YY + +P + FY ++ ++ + T+ VT
Sbjct: 2 GVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTG 61
Query: 60 IKEINDMIVSLD--YQNYNVQIFSADAQAS--YDNGLTVLVTGCLIGKDNVRRKFTQSFF 115
+ IN D ++ +++ + D Q + + ++ TG + KF Q+F
Sbjct: 62 RENINKFFSRNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFI 121
Query: 116 LAPQDKG--YFVLNDILRYV 133
L P G + + NDI+R++
Sbjct: 122 LLPSSNGSTFDITNDIIRFI 141
>sp|Q9NW13|RBM28_HUMAN RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3
Length = 759
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 296 GHSIFVGNLPDSATVDQLKLIFEQFGPVK 324
G ++FVG LP SA +QL+ +F Q GPVK
Sbjct: 3 GLTLFVGRLPPSARSEQLEELFSQVGPVK 31
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 297 HSIFVGNLPDSATVDQLKLIFEQFGPV 323
S+FVGN+P AT +QLK IF + GPV
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPV 42
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 297 HSIFVGNLPDSATVDQLKLIFEQFGPV 323
S+FVGN+P AT +QLK IF + GPV
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPV 42
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 297 HSIFVGNLPDSATVDQLKLIFEQFGPV 323
S+FVGN+P AT +QLK IF + GPV
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPV 42
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 297 HSIFVGNLPDSATVDQLKLIFEQFGPV 323
S+FVGN+P AT +QLK IF + GPV
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPV 42
>sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans
GN=uaf-1 PE=2 SV=2
Length = 496
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 297 HSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQVRSQ 333
+ IF+G LP+ T DQ+K + FGP+K + V SQ
Sbjct: 291 NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQ 327
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
GN=uaf-1 PE=3 SV=2
Length = 488
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 297 HSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQVRSQ 333
+ IF+G LP+ T DQ+K + FGP+K + V SQ
Sbjct: 282 NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQ 318
>sp|Q09702|NRD1_SCHPO Negative regulator of differentiation 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=nrd1 PE=1 SV=1
Length = 529
Score = 35.0 bits (79), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 281 SSNSSLERNNDHAAKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQVRSQK 334
+SNSS+ + ++F+GNLP+ T D+++ E FGP+ D I++ +++
Sbjct: 190 ASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFGPI--DQIKIVTER 241
>sp|Q6CC82|NTF2_YARLI Nuclear transport factor 2 OS=Yarrowia lipolytica (strain CLIB 122
/ E 150) GN=NTF2 PE=3 SV=1
Length = 123
Score = 35.0 bits (79), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 20 FVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNYNVQI 79
F E YY + + Y++ SM++ + T + I + +V L + +I
Sbjct: 12 FCEFYYQTFDTDRSQLGNLYRDHSMLTF-----TGTQHQGAQAIVEKLVGLPFGQVRHKI 66
Query: 80 FSADAQ-ASYDNG-LTVLVTGCLIGKDNVRRKFTQSFFLAPQDKGYFVLNDILR 131
DAQ AS G + VLVTG L + + Q F L P Y+V NDI R
Sbjct: 67 SDIDAQPASAQGGDVIVLVTGELCVDGDNPLPYAQVFHLIPDGSSYYVFNDIFR 120
>sp|Q21735|NTF2_CAEEL Probable nuclear transport factor 2 OS=Caenorhabditis elegans
GN=ran-4 PE=3 SV=1
Length = 133
Score = 34.7 bits (78), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 83 DAQASYDNGLTVLVTGCLIGKDNVRRKFTQSFFLAPQDKG-YFVLNDILR 131
D+Q YD + V+V G L ++ F+Q F L P ++G YF+ N+I R
Sbjct: 78 DSQPLYDGSIQVMVLGQLKTDEDPINPFSQVFILRPNNQGSYFIGNEIFR 127
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 274 PKVAAPPSSNSSLERNNDHAAKGHSIFVGNLPDSATVDQLKLIFEQFGPVK 324
PKVA P ++ + + IFVG L T++ +K FEQFGP++
Sbjct: 101 PKVAFPRRAHPKM------VTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIE 145
>sp|Q9U757|NXT1_CAEEL NTF2-related export protein OS=Caenorhabditis elegans GN=nxt-1 PE=1
SV=1
Length = 137
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 71 DYQNYNVQIFSADAQASYDNGLTVLVTGCLIGKDNVRRKFTQSFFLAPQDKGYFVLNDIL 130
D Q+ + Q G+ + V G + + +R FTQ+ L +D Y V +D
Sbjct: 74 DIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRF 133
Query: 131 RYVD 134
RYVD
Sbjct: 134 RYVD 137
>sp|P0CAN8|NXT1_SCHPO NTF2-related export protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=nxt1 PE=3 SV=1
Length = 115
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 20 FVEQYYCILHQNPDVVHRFYQESSMV---SRPDQSGSMTSVTTIKEINDMIVSLDYQNYN 76
FV++YY L N + + FY+E+S++ +P Q + E MIV+L Y
Sbjct: 11 FVQRYYSSLDTNRNGIAEFYRENSLILWNGKPMQ---------VTEFTSMIVNLPYSKTK 61
Query: 77 VQIFSADAQASYDNGLTVLVTGCL 100
V+ F + D + ++V+G +
Sbjct: 62 VEDFDSQQVMGNDMNIIIVVSGTI 85
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 283 NSSLERNNDHAAKGHSIFVGNLPDSATVDQLKLIFEQFGPV 323
N+S D K IFVG LP + T ++ + FE +GPV
Sbjct: 96 NTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPV 136
>sp|P48616|VIME_BOVIN Vimentin OS=Bos taurus GN=VIM PE=1 SV=3
Length = 466
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query: 198 QVLVAEKAVAAD-----PPVVASQNDARPAKEPAASKNEEEAPKKSFASVVHDLNKSKAP 252
Q + E+ V D P + A+ D R E A+KN +EA ++ + S DL+++
Sbjct: 246 QAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEA-EEWYKSKFADLSEAANR 304
Query: 253 FNVIMRAPSLKTVESSR--ATAAPKVAAPPSSNSSLERNNDHAAKGHSIFVGNLPDS 307
N +R ++ E R T +V A +N SLER + S+ N D+
Sbjct: 305 NNDALRQAKQESNEYRRQVQTLTCEVDALKGTNESLERQMREMEENFSVEAANYQDT 361
>sp|P33202|UFD4_YEAST Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UFD4 PE=1 SV=1
Length = 1483
Score = 33.1 bits (74), Expect = 2.6, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 58 TTIKEINDMIVSLDYQNYNVQIFSADAQASYDNGLTVLVTGCLIGKDNVRRKFTQSFFLA 117
+T K IND ++ L + +++A +Y + L+ G L D + +KF++ FF +
Sbjct: 545 STAKAINDQLIKLIGSILAQKETASNANGTYSSEAGTLLVGGLSLLDLICKKFSELFFPS 604
Query: 118 PQDKGYF-VLNDILRYVDEIDDK-DGSAGLTIND 149
+ +G F ++ D+ + ID K DG+ ++++D
Sbjct: 605 IKREGIFDLVKDLSVDFNNIDLKEDGNENISLSD 638
>sp|P39684|PES4_YEAST Protein PES4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PES4 PE=4 SV=2
Length = 611
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 259 APSLKTVESSRATAAPKVAAPPSSNSSLERNNDHAAKG------HSIFVGNLPDSATVDQ 312
P+ +T + SR A + S N + ND +K +SIF+ NLP T D
Sbjct: 260 VPNFET-QKSRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDD 318
Query: 313 LKLIFEQFGPVK 324
+ F + GP+K
Sbjct: 319 ILNFFSEVGPIK 330
>sp|P38760|MIP6_YEAST RNA-binding protein MIP6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MIP6 PE=1 SV=1
Length = 659
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 261 SLKTVESSRATAAPK----VAAPPSSNSSLERNNDHAAKGHSIFVGNLPDSATVDQLKLI 316
SLK + AT K V + S+++ +K +S+F+GNL + T + L+ I
Sbjct: 71 SLKKYDCKNATQEKKEQEQVFEKTVAKGSVQKYITKTSKTNSLFIGNLKSTVTEEMLRKI 130
Query: 317 FEQF 320
F+++
Sbjct: 131 FKRY 134
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 31.6 bits (70), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 271 TAAPKVAAPPSSNSSLERNNDHAAKGHSIFVGNLPDSATVDQLKLIFEQFGPV 323
T PKVA P + + + IFVG L + TV+ +K FEQFG V
Sbjct: 89 TIDPKVAFPRRAQPKM------VTRTKKIFVGGLSVNTTVEDVKQYFEQFGKV 135
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,605,748
Number of Sequences: 539616
Number of extensions: 5109054
Number of successful extensions: 15849
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 206
Number of HSP's that attempted gapping in prelim test: 15555
Number of HSP's gapped (non-prelim): 420
length of query: 334
length of database: 191,569,459
effective HSP length: 118
effective length of query: 216
effective length of database: 127,894,771
effective search space: 27625270536
effective search space used: 27625270536
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)