Query 037095
Match_columns 334
No_of_seqs 270 out of 1333
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q90_A RAS GTPase-activating p 100.0 1.9E-38 6.5E-43 272.5 13.8 127 10-136 6-138 (140)
2 1gy6_A Nuclear transport facto 100.0 5.3E-37 1.8E-41 259.4 14.3 122 10-136 4-125 (127)
3 1zo2_A NTF2, nuclear transport 100.0 6.8E-37 2.3E-41 259.5 14.7 121 10-135 8-129 (129)
4 3ujm_A Rasputin; NTF2-like fol 100.0 4.6E-37 1.6E-41 257.4 12.4 117 12-133 2-120 (120)
5 1gy7_A Nuclear transport facto 100.0 2.9E-36 1E-40 254.2 15.0 119 12-135 4-124 (125)
6 2qiy_A UBP3-associated protein 100.0 2.6E-35 8.8E-40 256.6 14.3 128 10-137 8-151 (154)
7 3nv0_B NTF2-related export pro 100.0 1.1E-34 3.6E-39 253.3 14.9 116 12-134 32-154 (154)
8 1jkg_A P15; NTF2-like domain, 100.0 2.1E-33 7.1E-38 240.9 14.6 118 11-135 11-138 (140)
9 1jkg_B TAP; NTF2-like domain, 99.9 7.9E-23 2.7E-27 190.8 13.1 124 11-136 12-171 (250)
10 1of5_A MRNA export factor MEX6 99.9 1.2E-22 4E-27 186.6 10.8 125 11-137 8-205 (221)
11 1q40_B MEX67, mRNA export fact 99.9 1.4E-21 4.9E-26 179.2 11.1 124 11-136 11-210 (219)
12 3nv0_A Nuclear RNA export fact 99.7 1.1E-17 3.8E-22 152.0 14.2 124 11-136 10-186 (205)
13 1q42_A MTR2, mRNA transport re 99.5 1.3E-14 4.5E-19 129.1 7.2 102 11-119 23-146 (201)
14 1of5_B MTR2, YKL186C, mRNA tra 99.2 3.3E-11 1.1E-15 106.1 10.8 101 12-119 14-121 (184)
15 3d2w_A TAR DNA-binding protein 98.6 2.2E-08 7.5E-13 78.0 4.2 39 294-332 9-47 (89)
16 4fxv_A ELAV-like protein 1; RN 98.6 4E-08 1.4E-12 78.1 5.1 37 294-330 17-53 (99)
17 1sjq_A Polypyrimidine tract-bi 98.5 9.2E-08 3.2E-12 77.9 4.3 35 295-329 15-49 (105)
18 3s7r_A Heterogeneous nuclear r 98.4 2.3E-07 7.7E-12 70.8 5.4 38 293-330 8-45 (87)
19 4f25_A Polyadenylate-binding p 98.4 2.1E-07 7.3E-12 75.4 4.9 35 296-330 5-39 (115)
20 1wf0_A TDP-43, TAR DNA-binding 98.4 1.5E-07 5.2E-12 72.2 3.7 37 295-331 4-40 (88)
21 2ad9_A Polypyrimidine tract-bi 98.4 3.5E-07 1.2E-11 76.0 5.6 36 294-329 29-64 (119)
22 1x4f_A Matrin 3; structural ge 98.4 1.4E-07 4.8E-12 77.6 3.2 39 294-333 23-62 (112)
23 1x4d_A Matrin 3; structural ge 98.4 2E-07 6.7E-12 75.3 3.9 34 295-328 14-48 (102)
24 2khc_A Testis-specific RNP-typ 98.3 8.1E-07 2.8E-11 71.6 7.0 37 293-329 37-73 (118)
25 3r27_A HnRNP L, heterogeneous 98.3 4E-07 1.4E-11 73.5 5.2 34 295-328 20-53 (100)
26 2cq1_A PTB-like protein L; RRM 98.3 4.5E-07 1.5E-11 72.8 5.4 35 294-328 13-47 (101)
27 1s79_A Lupus LA protein; RRM, 98.3 3.9E-07 1.3E-11 73.1 4.9 36 294-329 9-44 (103)
28 1wex_A Hypothetical protein (r 98.3 6.5E-07 2.2E-11 72.1 5.9 34 295-328 14-47 (104)
29 2dgt_A RNA-binding protein 30; 98.3 6.9E-07 2.4E-11 69.0 5.2 35 294-328 8-42 (92)
30 3md1_A Nuclear and cytoplasmic 98.3 6.1E-07 2.1E-11 67.5 4.7 34 296-329 1-34 (83)
31 2cq3_A RNA-binding protein 9; 98.3 1E-06 3.4E-11 69.4 6.0 36 294-329 13-48 (103)
32 2lkz_A RNA-binding protein 5; 98.3 6.2E-07 2.1E-11 71.1 4.8 36 294-329 7-42 (95)
33 2dnh_A Bruno-like 5, RNA bindi 98.3 9.7E-07 3.3E-11 69.6 5.9 37 294-330 13-49 (105)
34 2ytc_A PRE-mRNA-splicing facto 98.3 1.1E-06 3.6E-11 66.6 5.7 36 294-329 10-45 (85)
35 1x4c_A Splicing factor, argini 98.3 7.6E-07 2.6E-11 71.1 5.0 35 295-329 14-48 (108)
36 4a8x_A RNA-binding protein wit 98.3 7E-07 2.4E-11 67.8 4.5 36 295-330 3-38 (88)
37 2lxi_A RNA-binding protein 10; 98.3 3.7E-07 1.3E-11 71.1 3.0 33 297-329 2-35 (91)
38 2e44_A Insulin-like growth fac 98.3 6.1E-07 2.1E-11 69.6 4.2 37 295-331 14-50 (96)
39 2cqi_A Nucleolysin TIAR; RNA r 98.3 8.8E-07 3E-11 69.7 5.1 38 293-330 12-49 (103)
40 2cqg_A TDP-43, TAR DNA-binding 98.3 1.4E-06 4.8E-11 68.5 6.3 37 294-330 13-49 (103)
41 2dgs_A DAZ-associated protein 98.3 1.1E-06 3.9E-11 68.5 5.6 36 294-329 8-43 (99)
42 2d9p_A Polyadenylate-binding p 98.3 9.6E-07 3.3E-11 69.5 5.2 37 294-330 13-49 (103)
43 2rs2_A Musashi-1, RNA-binding 98.2 6.8E-07 2.3E-11 71.8 4.4 37 293-329 22-58 (109)
44 2dnp_A RNA-binding protein 14; 98.2 7.1E-07 2.4E-11 68.6 4.3 35 294-328 7-41 (90)
45 2cpf_A RNA binding motif prote 98.2 8.8E-07 3E-11 68.9 4.9 36 295-330 4-39 (98)
46 2m2b_A RNA-binding protein 10; 98.2 1.2E-06 4.1E-11 72.4 6.0 33 294-326 21-53 (131)
47 2cph_A RNA binding motif prote 98.2 1E-06 3.5E-11 69.5 5.2 36 294-329 13-48 (107)
48 2la4_A Nuclear and cytoplasmic 98.2 1E-06 3.4E-11 69.1 5.1 35 295-329 26-60 (101)
49 1wg5_A Heterogeneous nuclear r 98.2 1E-06 3.6E-11 69.9 5.1 32 294-325 13-44 (104)
50 3s8s_A Histone-lysine N-methyl 98.2 1.1E-06 3.8E-11 71.1 5.3 36 295-330 5-40 (110)
51 2dgv_A HnRNP M, heterogeneous 98.2 1.4E-06 4.6E-11 66.9 5.5 36 295-330 7-42 (92)
52 2cqd_A RNA-binding region cont 98.2 1.8E-06 6E-11 69.5 6.5 37 293-329 14-50 (116)
53 2dnm_A SRP46 splicing factor; 98.2 1.2E-06 4.2E-11 68.8 5.3 36 294-329 11-46 (103)
54 3ucg_A Polyadenylate-binding p 98.2 5.8E-07 2E-11 68.5 3.3 36 295-330 5-40 (89)
55 2err_A Ataxin-2-binding protei 98.2 1E-06 3.6E-11 70.6 5.0 36 294-329 27-62 (109)
56 1x4h_A RNA-binding protein 28; 98.2 1E-06 3.5E-11 70.0 4.8 36 294-329 13-48 (111)
57 3bs9_A Nucleolysin TIA-1 isofo 98.2 1.1E-06 3.6E-11 66.7 4.7 36 295-330 5-40 (87)
58 2cpz_A CUG triplet repeat RNA- 98.2 1.2E-06 4.1E-11 70.4 5.3 37 294-330 23-59 (115)
59 2dgp_A Bruno-like 4, RNA bindi 98.2 7.9E-07 2.7E-11 70.2 4.1 36 294-329 11-46 (106)
60 2kvi_A Nuclear polyadenylated 98.2 8.9E-07 3E-11 69.1 4.2 35 294-328 8-43 (96)
61 3mdf_A Peptidyl-prolyl CIS-tra 98.2 1.2E-06 4E-11 66.2 4.8 35 295-329 6-40 (85)
62 1x4e_A RNA binding motif, sing 98.2 8.8E-07 3E-11 67.2 4.0 36 295-330 4-39 (85)
63 2do4_A Squamous cell carcinoma 98.2 2.2E-06 7.6E-11 67.0 6.5 37 294-330 15-51 (100)
64 2dgo_A Cytotoxic granule-assoc 98.2 1.5E-06 5.3E-11 69.6 5.6 36 294-329 13-48 (115)
65 2dnq_A RNA-binding protein 4B; 98.2 1.4E-06 4.9E-11 66.9 5.2 35 295-329 7-41 (90)
66 2jvo_A Nucleolar protein 3; nu 98.2 1.2E-06 4E-11 70.5 4.9 37 293-329 28-64 (108)
67 2dh8_A DAZ-associated protein 98.2 1.1E-06 3.9E-11 69.3 4.8 37 294-330 14-50 (105)
68 2ywk_A Putative RNA-binding pr 98.2 1.2E-06 4.1E-11 67.7 4.8 37 294-330 14-50 (95)
69 2cqc_A Arginine/serine-rich sp 98.2 1.5E-06 5.2E-11 66.9 5.4 37 294-330 13-49 (95)
70 1uaw_A Mouse-musashi-1; RNP-ty 98.2 7.5E-07 2.6E-11 66.0 3.4 33 297-329 1-33 (77)
71 2xs2_A Deleted in azoospermia- 98.2 9.7E-07 3.3E-11 69.3 4.2 37 294-330 7-43 (102)
72 2dgx_A KIAA0430 protein; RRM d 98.2 9E-07 3.1E-11 69.2 4.0 35 295-329 8-46 (96)
73 1whw_A Hypothetical protein ri 98.2 1.2E-06 4E-11 68.4 4.6 35 295-329 7-41 (99)
74 1x5u_A Splicing factor 3B subu 98.2 1.5E-06 5.2E-11 68.4 5.3 36 294-329 13-48 (105)
75 3p5t_L Cleavage and polyadenyl 98.2 8E-07 2.7E-11 68.6 3.5 34 297-330 2-37 (90)
76 2jrs_A RNA-binding protein 39; 98.2 2E-06 6.8E-11 69.0 6.0 37 294-330 24-60 (108)
77 2cq4_A RNA binding motif prote 98.2 1.5E-06 5.2E-11 69.6 5.3 36 294-329 23-58 (114)
78 2wbr_A GW182, gawky, LD47780P; 98.2 7.9E-07 2.7E-11 70.5 3.4 35 295-329 6-40 (89)
79 2do0_A HnRNP M, heterogeneous 98.2 1.9E-06 6.3E-11 68.9 5.7 37 294-330 13-49 (114)
80 1whx_A Hypothetical protein ri 98.2 9.6E-07 3.3E-11 71.2 3.9 34 295-328 9-42 (111)
81 2e5g_A U6 snRNA-specific termi 98.2 1.7E-06 5.7E-11 67.2 5.1 32 295-326 7-38 (94)
82 2la6_A RNA-binding protein FUS 98.2 1.7E-06 5.8E-11 67.7 5.2 31 295-325 12-42 (99)
83 1x4a_A Splicing factor, argini 98.2 1.7E-06 5.7E-11 68.9 5.1 35 294-328 20-54 (109)
84 2jvr_A Nucleolar protein 3; RN 98.2 6.7E-07 2.3E-11 73.1 2.8 35 295-329 27-62 (111)
85 2mss_A Protein (musashi1); RNA 98.2 9.7E-07 3.3E-11 65.3 3.4 32 298-329 1-32 (75)
86 1x5t_A Splicing factor 3B subu 98.2 1.4E-06 4.7E-11 67.4 4.4 35 295-329 4-39 (96)
87 2cq0_A Eukaryotic translation 98.2 1.4E-06 4.8E-11 68.5 4.6 36 294-329 13-48 (103)
88 2div_A TRNA selenocysteine ass 98.2 1.6E-06 5.3E-11 67.6 4.7 35 295-329 8-43 (99)
89 2dgu_A Heterogeneous nuclear r 98.2 1.6E-06 5.5E-11 68.4 4.7 34 295-328 10-43 (103)
90 2xnq_A Nuclear polyadenylated 98.2 1.7E-06 5.9E-11 68.0 4.8 34 295-328 21-55 (97)
91 2cqb_A Peptidyl-prolyl CIS-tra 98.2 1.7E-06 5.7E-11 67.8 4.6 35 295-329 11-45 (102)
92 1p27_B RNA-binding protein 8A; 98.2 1.6E-06 5.4E-11 68.4 4.5 35 295-329 22-56 (106)
93 2dnz_A Probable RNA-binding pr 98.1 2.2E-06 7.4E-11 66.2 5.2 35 295-329 4-38 (95)
94 2krb_A Eukaryotic translation 98.1 1.2E-06 4.2E-11 66.1 3.7 34 296-329 1-40 (81)
95 3zzy_A Polypyrimidine tract-bi 98.1 1.7E-06 6E-11 72.9 5.0 38 295-332 27-64 (130)
96 1wel_A RNA-binding protein 12; 98.1 2E-06 6.7E-11 70.3 5.0 36 295-330 24-59 (124)
97 2dhg_A TRNA selenocysteine ass 98.1 2.4E-06 8.2E-11 67.2 5.3 37 294-330 7-44 (104)
98 2cqp_A RNA-binding protein 12; 98.1 2.2E-06 7.5E-11 66.6 5.0 37 295-331 14-50 (98)
99 2dha_A FLJ20171 protein; RRM d 98.1 1.6E-06 5.5E-11 72.0 4.4 31 294-324 21-51 (123)
100 1u6f_A Tcubp1, RNA-binding pro 98.1 7.6E-06 2.6E-10 67.7 8.5 36 294-329 40-75 (139)
101 2e5h_A Zinc finger CCHC-type a 98.1 2.5E-06 8.4E-11 65.7 5.1 35 295-329 15-49 (94)
102 2fy1_A RNA-binding motif prote 98.1 2.2E-06 7.5E-11 69.7 5.0 36 294-329 5-40 (116)
103 1x5s_A Cold-inducible RNA-bind 98.1 2E-06 6.8E-11 67.4 4.6 35 295-329 11-45 (102)
104 2lmi_A GRSF-1, G-rich sequence 98.1 1.2E-06 4.2E-11 69.8 3.5 35 294-328 9-46 (107)
105 3ns6_A Eukaryotic translation 98.1 8.6E-07 2.9E-11 70.0 2.5 37 294-330 4-46 (100)
106 3ulh_A THO complex subunit 4; 98.1 2.3E-06 7.8E-11 67.6 5.0 35 295-329 28-62 (107)
107 1x5o_A RNA binding motif, sing 98.1 2.4E-06 8.3E-11 68.3 5.2 37 294-330 23-59 (114)
108 2x1f_A MRNA 3'-END-processing 98.1 2E-06 6.8E-11 66.9 4.4 34 296-329 2-35 (96)
109 2cpj_A Non-POU domain-containi 98.1 3.2E-06 1.1E-10 66.0 5.6 35 295-329 14-48 (99)
110 2e5j_A Methenyltetrahydrofolat 98.1 3E-06 1E-10 66.1 5.5 33 295-328 18-50 (97)
111 2cpx_A Hypothetical protein FL 98.1 1.3E-06 4.4E-11 70.0 3.3 37 295-331 24-60 (115)
112 3lqv_A PRE-mRNA branch site pr 98.1 2.4E-06 8.3E-11 68.4 5.0 35 295-329 7-41 (115)
113 1oo0_B CG8781-PA, drosophila Y 98.1 2.4E-06 8.1E-11 68.0 4.9 36 294-329 24-59 (110)
114 1why_A Hypothetical protein ri 98.1 2.3E-06 8E-11 66.6 4.8 34 295-328 16-49 (97)
115 2cpy_A RNA-binding protein 12; 98.1 2E-06 7E-11 69.3 4.6 35 294-328 13-48 (114)
116 1iqt_A AUF1, heterogeneous nuc 98.1 1E-06 3.4E-11 65.2 2.5 32 298-329 1-32 (75)
117 1x4b_A Heterogeneous nuclear r 98.1 1.2E-06 4.1E-11 70.5 3.2 37 294-330 25-61 (116)
118 1wf1_A RNA-binding protein RAL 98.1 2.7E-06 9.3E-11 67.8 5.2 34 295-328 26-60 (110)
119 3beg_B Splicing factor, argini 98.1 1.2E-06 4.1E-11 71.0 3.0 34 295-328 15-48 (115)
120 2db1_A Heterogeneous nuclear r 98.1 2.7E-06 9.3E-11 69.3 5.1 36 294-329 15-53 (118)
121 2dnl_A Cytoplasmic polyadenyla 98.1 1.8E-06 6.2E-11 69.6 4.0 30 295-324 7-36 (114)
122 2cpe_A RNA-binding protein EWS 98.1 2.4E-06 8.2E-11 68.2 4.6 33 293-325 12-44 (113)
123 1p1t_A Cleavage stimulation fa 98.1 1.5E-06 5.1E-11 68.2 3.2 35 295-329 7-41 (104)
124 2ek1_A RNA-binding protein 12; 98.1 2.2E-06 7.7E-11 66.1 4.2 36 295-330 14-49 (95)
125 2hvz_A Splicing factor, argini 98.1 1.8E-06 6.1E-11 67.7 3.6 33 297-329 1-33 (101)
126 3ex7_B RNA-binding protein 8A; 98.1 2.9E-06 1E-10 69.0 5.0 36 294-329 20-55 (126)
127 3n9u_C Cleavage and polyadenyl 98.1 2.6E-06 9E-11 73.2 4.8 35 295-329 54-90 (156)
128 2nlw_A Eukaryotic translation 98.1 2.8E-06 9.5E-11 67.5 4.6 35 295-329 14-54 (105)
129 1x4g_A Nucleolysin TIAR; struc 98.1 2.8E-06 9.7E-11 67.6 4.6 36 294-329 23-58 (109)
130 2fc9_A NCL protein; structure 98.1 3.3E-06 1.1E-10 66.1 4.7 31 294-324 13-43 (101)
131 1fj7_A Nucleolin RBD1, protein 98.1 8.8E-07 3E-11 69.4 1.2 31 295-325 16-46 (101)
132 2cpd_A Apobec-1 stimulating pr 98.1 6.4E-06 2.2E-10 64.3 6.2 34 295-328 14-49 (99)
133 2cqh_A IGF-II mRNA-binding pro 98.1 2.9E-06 9.8E-11 65.5 4.1 33 295-327 7-40 (93)
134 1wi8_A EIF-4B, eukaryotic tran 98.0 3.9E-06 1.3E-10 66.1 4.9 34 295-329 14-47 (104)
135 2e5i_A Heterogeneous nuclear r 98.0 3.7E-06 1.3E-10 70.2 4.9 35 296-330 25-59 (124)
136 2jwn_A Embryonic polyadenylate 98.0 2.2E-06 7.4E-11 69.6 3.3 37 294-330 34-70 (124)
137 2kt5_A RNA and export factor-b 98.0 3.6E-06 1.2E-10 68.5 4.7 37 294-330 33-69 (124)
138 2hgl_A HNRPF protein, heteroge 98.0 3.2E-06 1.1E-10 71.4 4.5 36 294-329 42-80 (136)
139 1wez_A HnRNP H', FTP-3, hetero 98.0 3E-06 1E-10 67.4 4.1 33 295-328 14-46 (102)
140 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.0 7.6E-06 2.6E-10 67.3 6.6 36 294-329 61-96 (140)
141 1nu4_A U1A RNA binding domain; 98.0 3.9E-06 1.3E-10 65.0 4.5 34 295-328 7-44 (97)
142 2i2y_A Fusion protein consists 98.0 3.6E-06 1.2E-10 70.8 4.1 37 294-330 71-107 (150)
143 2dis_A Unnamed protein product 98.0 3.1E-06 1E-10 67.1 3.5 35 295-329 7-42 (109)
144 2j76_E EIF-4B, EIF4B, eukaryot 98.0 1.8E-06 6.2E-11 67.9 2.1 34 295-329 18-51 (100)
145 1sjr_A Polypyrimidine tract-bi 98.0 3.6E-06 1.2E-10 73.7 4.1 37 295-331 45-81 (164)
146 2dng_A Eukaryotic translation 98.0 7.3E-06 2.5E-10 64.4 5.5 34 295-329 14-47 (103)
147 2kxn_B Transformer-2 protein h 98.0 5E-06 1.7E-10 69.0 4.6 36 294-329 44-79 (129)
148 2ki2_A SS-DNA binding protein 98.0 1.4E-06 4.8E-11 66.7 1.0 33 297-329 2-34 (90)
149 1h2v_Z 20 kDa nuclear CAP bind 98.0 8.5E-06 2.9E-10 68.9 5.7 36 295-330 38-73 (156)
150 2dgw_A Probable RNA-binding pr 97.9 9.8E-06 3.4E-10 62.1 5.4 36 294-330 8-43 (91)
151 2kn4_A Immunoglobulin G-bindin 97.9 6E-06 2.1E-10 69.6 4.5 35 295-329 69-103 (158)
152 1fjc_A Nucleolin RBD2, protein 97.9 4.7E-06 1.6E-10 64.5 3.5 33 294-326 14-46 (96)
153 2cpi_A CCR4-NOT transcription 97.9 2.9E-06 1E-10 68.1 2.4 34 295-328 14-50 (111)
154 2lea_A Serine/arginine-rich sp 97.9 4.6E-06 1.6E-10 69.7 3.6 36 294-329 45-80 (135)
155 3q2s_C Cleavage and polyadenyl 97.9 7.4E-06 2.5E-10 74.5 5.1 36 295-330 67-104 (229)
156 1rk8_A CG8781-PA, CG8781-PA pr 97.9 7.8E-06 2.7E-10 70.1 4.7 36 295-330 71-106 (165)
157 2hgn_A Heterogeneous nuclear r 97.9 4.8E-06 1.6E-10 70.6 3.0 34 294-328 44-77 (139)
158 1wg1_A KIAA1579 protein, homol 97.9 7.8E-06 2.7E-10 62.6 3.9 33 295-328 4-36 (88)
159 2dnn_A RNA-binding protein 12; 97.9 6.1E-06 2.1E-10 67.0 3.1 34 295-329 15-48 (109)
160 2hgm_A HNRPF protein, heteroge 97.9 1.6E-05 5.3E-10 66.4 5.6 29 295-324 41-69 (126)
161 3egn_A RNA-binding protein 40; 97.9 7.4E-06 2.5E-10 68.3 3.5 32 295-326 44-75 (143)
162 2hzc_A Splicing factor U2AF 65 97.9 9.5E-06 3.2E-10 61.4 3.8 34 295-328 5-49 (87)
163 2a3j_A U1 small nuclear ribonu 97.8 1.2E-05 4.2E-10 66.9 4.7 34 295-328 28-65 (127)
164 2lcw_A RNA-binding protein FUS 97.1 2.2E-06 7.5E-11 69.0 0.0 33 293-325 4-36 (116)
165 2cq2_A Hypothetical protein LO 97.8 7.4E-06 2.5E-10 67.5 3.0 34 295-328 24-59 (114)
166 2f3j_A RNA and export factor b 97.8 1.5E-05 5E-10 69.8 4.2 35 295-329 87-121 (177)
167 2qfj_A FBP-interacting repress 97.8 1.7E-05 5.7E-10 69.2 4.3 36 294-329 26-61 (216)
168 2voo_A Lupus LA protein; RNA-b 97.7 2E-05 6.8E-10 69.8 4.6 35 295-329 108-142 (193)
169 3nmr_A Cugbp ELAV-like family 97.7 2.7E-05 9.4E-10 65.2 4.8 35 295-329 94-128 (175)
170 1l3k_A Heterogeneous nuclear r 97.7 3.2E-05 1.1E-09 66.3 5.0 35 295-329 103-137 (196)
171 3pgw_A U1-A; protein-RNA compl 97.7 0.00011 3.7E-09 67.2 8.9 36 294-329 205-240 (282)
172 3md3_A Nuclear and cytoplasmic 97.6 5.5E-05 1.9E-09 62.7 5.6 36 295-330 86-121 (166)
173 4f02_A Polyadenylate-binding p 97.6 4.3E-05 1.5E-09 67.7 5.0 35 296-330 103-137 (213)
174 2g4b_A Splicing factor U2AF 65 97.6 4.7E-05 1.6E-09 63.9 4.7 35 296-330 94-128 (172)
175 1x5p_A Negative elongation fac 97.6 7.3E-05 2.5E-09 58.1 5.3 32 295-328 14-45 (97)
176 2adc_A Polypyrimidine tract-bi 97.6 3.9E-05 1.3E-09 68.7 4.2 35 295-329 33-68 (229)
177 2fc8_A NCL protein; structure 97.6 4.9E-05 1.7E-09 59.3 4.1 30 295-324 14-43 (102)
178 2cjk_A Nuclear polyadenylated 97.6 2.9E-05 1E-09 64.8 3.0 35 296-330 87-121 (167)
179 2qfj_A FBP-interacting repress 97.6 6.3E-05 2.2E-09 65.4 5.1 36 295-330 124-159 (216)
180 3tyt_A Heterogeneous nuclear r 97.6 3E-05 1E-09 69.1 3.0 30 295-324 122-151 (205)
181 3sde_A Paraspeckle component 1 97.6 4E-05 1.4E-09 70.1 3.9 34 295-328 21-54 (261)
182 4i4k_A Uncharacterized protein 97.6 0.00052 1.8E-08 57.2 10.5 110 15-129 19-136 (143)
183 2ghp_A U4/U6 snRNA-associated 97.6 3.9E-05 1.3E-09 70.5 3.8 38 293-330 38-75 (292)
184 2diu_A KIAA0430 protein; struc 97.6 6.9E-05 2.4E-09 60.1 4.7 29 298-326 11-44 (96)
185 2yh0_A Splicing factor U2AF 65 97.6 6.2E-05 2.1E-09 64.6 4.8 36 295-330 113-148 (198)
186 1fxl_A Paraneoplastic encephal 97.5 7.8E-05 2.7E-09 61.8 5.0 36 295-330 87-122 (167)
187 1b7f_A Protein (SXL-lethal pro 97.5 0.00011 3.7E-09 61.3 5.9 35 295-329 88-122 (168)
188 3pgw_S U1-70K; protein-RNA com 97.5 6.4E-05 2.2E-09 74.8 5.0 36 295-330 101-136 (437)
189 3u1l_A PRE-mRNA-splicing facto 97.4 9.3E-05 3.2E-09 68.4 3.5 35 295-329 133-176 (240)
190 2adc_A Polypyrimidine tract-bi 97.3 0.00016 5.5E-09 64.6 4.7 36 295-330 150-186 (229)
191 1owx_A Lupus LA protein, SS-B, 97.3 0.00014 4.8E-09 60.6 3.9 36 294-329 16-52 (121)
192 3sde_A Paraspeckle component 1 97.3 0.00018 6.3E-09 65.6 5.1 36 295-330 95-130 (261)
193 1fje_B Nucleolin RBD12, protei 97.3 0.00013 4.4E-09 61.6 3.6 32 295-326 98-129 (175)
194 1qm9_A Polypyrimidine tract-bi 97.3 0.00017 5.9E-09 62.3 4.3 35 295-329 119-154 (198)
195 3smz_A Protein raver-1, ribonu 97.2 0.00025 8.4E-09 64.8 4.8 35 296-330 95-129 (284)
196 3cu3_A Domain of unknown funct 97.2 0.0025 8.5E-08 54.2 10.5 116 14-134 15-139 (172)
197 2bz2_A Negative elongation fac 97.2 0.00026 9E-09 57.9 4.1 32 295-328 38-69 (121)
198 2ghp_A U4/U6 snRNA-associated 97.1 0.00025 8.7E-09 65.0 3.6 35 295-329 209-244 (292)
199 3hx8_A MLR2180 protein, putati 97.1 0.0071 2.4E-07 47.6 11.7 114 12-132 3-125 (129)
200 3gzr_A Uncharacterized protein 97.1 0.0098 3.3E-07 49.8 13.0 115 17-136 8-133 (146)
201 3smz_A Protein raver-1, ribonu 97.0 0.00056 1.9E-08 62.4 5.1 36 295-330 183-219 (284)
202 3d9r_A Ketosteroid isomerase-l 96.8 0.015 5.1E-07 46.2 11.1 114 14-133 10-133 (135)
203 3h51_A Putative calcium/calmod 96.4 0.15 5.3E-06 42.1 15.2 118 11-135 16-142 (156)
204 3b7c_A Uncharacterized protein 96.2 0.14 4.8E-06 40.8 13.6 105 18-130 8-120 (122)
205 3gwr_A Putative calcium/calmod 95.8 0.078 2.7E-06 44.2 10.6 110 19-133 12-128 (144)
206 2gxf_A Hypothetical protein YY 95.7 0.046 1.6E-06 44.6 8.8 106 18-129 6-120 (142)
207 2pe8_A Splicing factor 45; RRM 95.7 0.0093 3.2E-07 47.6 4.3 36 295-330 7-47 (105)
208 2ux0_A Calcium-calmodulin depe 95.6 0.22 7.7E-06 40.2 12.4 114 17-133 15-137 (143)
209 2dit_A HIV TAT specific factor 95.4 0.011 3.8E-07 46.9 3.9 34 295-328 14-58 (112)
210 3f7s_A Uncharacterized NTF2-li 95.2 0.39 1.3E-05 38.6 12.6 114 14-132 7-127 (142)
211 2d9o_A DNAJ (HSP40) homolog, s 95.1 0.038 1.3E-06 43.8 5.9 34 296-329 10-50 (100)
212 2rcd_A Uncharacterized protein 94.9 0.53 1.8E-05 37.6 12.5 111 14-132 14-126 (129)
213 3rob_A Uncharacterized conserv 94.6 0.31 1.1E-05 40.4 10.7 110 12-130 14-134 (139)
214 3bb9_A Putative orphan protein 94.1 0.2 6.8E-06 41.1 8.3 109 15-129 30-146 (148)
215 2rfr_A Uncharacterized protein 94.0 0.35 1.2E-05 39.4 9.7 113 16-135 20-144 (155)
216 3duk_A NTF2-like protein of un 93.9 0.86 2.9E-05 36.9 11.6 108 17-132 14-123 (125)
217 3b8l_A Uncharacterized protein 93.8 0.5 1.7E-05 39.1 10.3 119 14-134 27-153 (163)
218 3mg1_A OCP, orange carotenoid 93.6 0.27 9.1E-06 46.8 9.0 114 11-130 188-306 (323)
219 1tp6_A Hypothetical protein PA 93.5 0.55 1.9E-05 38.1 9.9 107 17-129 12-125 (128)
220 3dm8_A Uncharacterized protein 93.3 0.77 2.6E-05 37.4 10.6 96 18-116 7-111 (143)
221 2owp_A Hypothetical protein BX 93.3 2.4 8.1E-05 34.5 13.5 114 14-133 11-126 (129)
222 3cnx_A Uncharacterized protein 93.1 1.1 3.7E-05 38.8 11.6 113 18-135 15-158 (170)
223 3er7_A Uncharacterized NTF2-li 93.0 0.048 1.7E-06 45.3 2.7 58 19-81 6-71 (131)
224 2chc_A Protein RV3472; hypothe 92.8 1.3 4.4E-05 36.8 11.5 114 15-134 14-133 (170)
225 1nww_A Limonene-1,2-epoxide hy 92.8 1.9 6.5E-05 34.6 12.2 51 17-71 24-75 (149)
226 3jum_A Phenazine biosynthesis 92.3 0.68 2.3E-05 40.8 9.3 83 16-100 42-128 (185)
227 3soy_A NTF2-like superfamily p 92.3 1.1 3.6E-05 37.1 10.1 115 14-131 10-134 (145)
228 3fka_A Uncharacterized NTF-2 l 92.2 1.1 3.7E-05 36.0 9.8 104 18-132 12-119 (120)
229 3a76_A Gamma-hexachlorocyclohe 92.1 1.2 4.3E-05 37.6 10.6 116 15-134 31-155 (176)
230 1jmt_A Splicing factor U2AF 35 91.4 0.021 7.3E-07 45.2 -1.4 30 300-329 19-60 (104)
231 2r4i_A Uncharacterized protein 91.3 2.6 8.8E-05 32.3 10.9 106 19-130 10-119 (123)
232 3blz_A NTF2-like protein of un 91.3 3.1 0.0001 33.1 11.6 111 16-134 13-126 (128)
233 3ue2_A Poly(U)-binding-splicin 91.1 0.19 6.6E-06 40.8 4.1 36 295-330 19-59 (118)
234 3dxo_A Uncharacterized snoal-l 90.9 1.1 3.9E-05 35.5 8.6 64 18-86 6-77 (121)
235 3f14_A Uncharacterized NTF2-li 90.5 0.66 2.2E-05 36.2 6.7 90 19-117 4-100 (112)
236 4h3u_A Hypothetical protein; s 90.5 2.8 9.4E-05 34.4 10.9 60 19-81 29-91 (158)
237 3h3h_A Uncharacterized snoal-l 90.2 0.35 1.2E-05 38.1 4.9 65 16-82 9-82 (122)
238 3v4m_A Splicing factor U2AF 65 90.2 0.18 6.2E-06 39.8 3.1 34 296-329 5-48 (105)
239 1s5a_A Hypothetical protein YE 89.7 3.1 0.00011 33.1 10.4 55 17-71 12-68 (150)
240 3en8_A Uncharacterized NTF-2 l 89.5 3.8 0.00013 32.8 10.7 63 17-82 7-70 (128)
241 3dmc_A NTF2-like protein; stru 89.5 5.6 0.00019 32.0 11.8 61 10-71 7-68 (134)
242 3i0y_A Putative polyketide cyc 88.9 4.5 0.00015 31.8 10.7 51 17-71 10-61 (140)
243 1z1s_A Hypothetical protein PA 88.9 4.2 0.00014 33.6 10.9 54 18-71 26-81 (163)
244 1ohp_A Steroid delta-isomerase 88.4 1.5 5.1E-05 33.3 7.2 52 17-71 7-59 (125)
245 3ff0_A Phenazine biosynthesis 87.9 3 0.0001 35.9 9.4 85 14-102 18-108 (163)
246 3f7x_A Putative polyketide cyc 87.7 7.3 0.00025 31.8 11.5 51 17-71 22-73 (151)
247 3ec9_A Uncharacterized NTF2-li 87.5 7.1 0.00024 30.8 11.1 65 18-82 15-83 (140)
248 3ebt_A Uncharacterized NTF2-li 87.4 5.2 0.00018 31.1 10.0 64 18-81 6-75 (132)
249 3k0z_A Putative polyketide cyc 87.3 9.9 0.00034 31.3 12.2 62 17-82 36-100 (159)
250 3ff2_A Uncharacterized cystati 87.3 2.9 0.0001 32.3 8.4 62 18-82 5-69 (117)
251 3fsd_A NTF2-like protein of un 87.3 5.1 0.00017 31.9 10.1 109 13-129 13-129 (134)
252 3hk4_A MLR7391 protein; NTF2-l 87.1 6.3 0.00022 32.2 10.7 100 18-121 23-127 (136)
253 2rgq_A Domain of unknown funct 86.6 11 0.00038 30.2 12.6 110 15-132 10-127 (144)
254 1sjw_A Nogalonic acid methyl e 86.1 7.5 0.00026 30.7 10.5 63 18-83 5-71 (144)
255 3gzb_A Putative snoal-like pol 85.6 1.7 5.7E-05 36.7 6.2 79 18-104 23-104 (154)
256 2gex_A SNOL; alpha+beta barrel 85.5 11 0.00037 30.4 11.3 62 17-83 6-70 (152)
257 3ctr_A Poly(A)-specific ribonu 84.8 0.71 2.4E-05 37.0 3.5 29 297-331 7-35 (101)
258 3ef8_A Putative scyalone dehyd 84.5 11 0.00037 30.6 10.9 113 17-133 13-133 (150)
259 3fh1_A Uncharacterized NTF2-li 84.0 1.5 5.1E-05 34.7 5.2 69 14-82 16-86 (129)
260 3g0k_A Putative membrane prote 83.8 11 0.00036 31.0 10.6 67 11-83 23-93 (148)
261 2bng_A MB2760; epoxide hydrola 82.9 15 0.00052 29.3 11.1 63 16-82 16-80 (149)
262 2a15_A Hypothetical protein RV 82.8 12 0.00041 29.3 10.3 55 17-71 9-68 (139)
263 1whv_A Poly(A)-specific ribonu 82.4 0.87 3E-05 36.4 3.1 29 297-331 17-45 (100)
264 2f99_A Aklanonic acid methyl e 82.1 18 0.0006 29.3 11.3 65 16-83 12-80 (153)
265 2gey_A ACLR protein; alpha+bet 82.1 19 0.00064 29.2 11.9 61 17-83 6-69 (158)
266 1tuh_A BAL32A, hypothetical pr 82.0 12 0.0004 30.3 10.1 68 15-82 29-100 (156)
267 2f86_B Hypothetical protein K1 80.4 11 0.00038 31.0 9.5 112 18-134 15-134 (143)
268 3ke7_A Putative ketosteroid is 79.9 12 0.00041 30.7 9.5 98 29-133 29-130 (134)
269 3g8z_A Protein of unknown func 78.8 13 0.00046 30.0 9.4 54 17-70 22-76 (148)
270 3f9s_A Putative polyketide cyc 77.8 24 0.00082 27.9 11.5 65 18-83 9-78 (146)
271 2dnr_A Synaptojanin-1; RRM dom 77.0 1.6 5.5E-05 34.3 3.0 34 296-329 7-48 (91)
272 3s6e_A RNA-binding protein 39; 76.5 1.2 4E-05 35.9 2.1 20 309-328 30-49 (114)
273 3ehc_A Snoal-like polyketide c 76.3 23 0.00077 27.4 9.8 58 18-83 6-66 (128)
274 3fgy_A Uncharacterized NTF2-li 75.3 5.7 0.00019 31.0 6.0 54 17-70 7-61 (135)
275 1oh0_A Steroid delta-isomerase 73.8 15 0.00052 28.1 8.1 52 16-70 8-60 (131)
276 3grd_A Uncharacterized NTF2-su 73.6 7.8 0.00027 30.3 6.4 82 18-102 7-92 (134)
277 3kkg_A Putative snoal-like pol 73.4 20 0.00068 28.5 9.0 63 17-83 11-79 (146)
278 3ejv_A Uncharacterized protein 71.1 47 0.0016 28.1 11.9 75 12-86 23-107 (179)
279 3f40_A Uncharacterized NTF2-li 70.4 8.6 0.00029 30.1 5.9 49 18-71 9-58 (114)
280 4f25_A Polyadenylate-binding p 65.6 1.3 4.4E-05 34.9 0.0 17 296-312 97-113 (115)
281 3mso_A Steroid delta-isomerase 64.7 4.8 0.00016 33.0 3.4 52 16-70 10-62 (143)
282 3f8h_A Putative polyketide cyc 64.2 50 0.0017 26.6 9.7 48 19-70 22-70 (150)
283 1uw4_A UPF3X; nonsense mediate 63.9 4.7 0.00016 31.4 3.0 27 297-323 2-28 (91)
284 3rga_A Epoxide hydrolase; NTF2 61.4 50 0.0017 30.0 10.1 56 13-71 136-192 (283)
285 1ufw_A Synaptojanin 2; RNP dom 59.6 3.2 0.00011 32.8 1.3 35 295-329 14-57 (95)
286 3rga_A Epoxide hydrolase; NTF2 58.4 22 0.00074 32.5 7.0 52 16-70 7-59 (283)
287 3g16_A Uncharacterized protein 56.6 9.3 0.00032 32.4 3.8 58 13-71 8-66 (156)
288 2dhx_A Poly (ADP-ribose) polym 54.1 11 0.00038 30.2 3.6 25 295-319 7-31 (104)
289 2k54_A Protein ATU0742; protei 53.3 71 0.0024 24.2 12.0 61 18-82 6-69 (123)
290 3pq1_A Poly(A) RNA polymerase; 48.0 6.8 0.00023 39.1 1.8 30 296-326 53-82 (464)
291 3cwz_B RAB6IP1, RAB6-interacti 46.2 27 0.00093 33.9 5.7 79 13-100 174-277 (384)
292 3dxb_A Thioredoxin N-terminall 44.9 11 0.00038 32.6 2.5 21 309-329 142-162 (222)
293 3f8x_A Putative delta-5-3-keto 40.7 25 0.00084 29.1 3.9 55 13-70 18-73 (148)
294 2l08_A Regulator of nonsense t 35.4 16 0.00055 28.8 1.8 26 295-320 8-33 (97)
295 3lqv_A PRE-mRNA branch site pr 27.6 8.4 0.00029 29.6 -1.1 21 302-322 89-109 (115)
296 1wey_A Calcipressin 1; structu 27.5 24 0.00081 28.2 1.5 29 297-325 6-39 (104)
297 4giw_A RUN and SH3 domain-cont 27.4 27 0.00092 30.5 2.1 57 12-73 115-184 (198)
298 3ub1_A ORF13-like protein; NTF 27.4 3.5E+02 0.012 24.6 11.2 32 14-45 154-186 (261)
299 4gb5_A Uncharacterized protein 27.3 2E+02 0.0069 22.8 7.4 68 18-85 14-85 (159)
300 2imj_A Hypothetical protein DU 26.3 61 0.0021 27.7 3.9 54 11-69 13-67 (166)
301 3fut_A Dimethyladenosine trans 23.0 59 0.002 29.6 3.6 32 296-328 110-141 (271)
302 3tqs_A Ribosomal RNA small sub 20.6 28 0.00097 31.3 0.9 31 299-329 99-129 (255)
303 1i4w_A Mitochondrial replicati 20.2 46 0.0016 31.7 2.3 22 298-319 144-165 (353)
304 3lyg_A NTF2-like protein of un 20.1 3.5E+02 0.012 21.9 10.4 50 20-72 7-61 (120)
No 1
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=100.00 E-value=1.9e-38 Score=272.52 Aligned_cols=127 Identities=39% Similarity=0.676 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcchhcccccCCCceeccCC--CCcc-cccccHHHHHHHHhcCCCccceEEEEEEEEEE
Q 037095 10 ALSPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQ--SGSM-TSVTTIKEINDMIVSLDYQNYNVQIFSADAQA 86 (334)
Q Consensus 10 ~~~a~~VG~~FV~qYY~~L~~~p~~L~~fY~~~S~l~~~g~--~g~~-~~~~G~~~I~~~i~sL~~~~~~~~I~tvD~Q~ 86 (334)
.|++++||++||+|||++|+++|+.|++||+++|+|+|.+. +|.+ ..++|+++|.++|++||+++|+++|.++|||+
T Consensus 6 ~p~~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~~~~~~~I~tvD~Qp 85 (140)
T 3q90_A 6 KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHA 85 (140)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEC----------CCCEEHHHHHHHHHHHTCCCSCEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHhhcccCceEEEEccCCCCceeecccCHHHHHHHHHhCCCccceEEEEeEEEEE
Confidence 57899999999999999999999999999999999999754 4554 37899999999999999999999999999999
Q ss_pred eCCCCEEEEEEEEEEeCCCCcceeEEEEEEEEeC---CeEEEEccEEEeecCC
Q 037095 87 SYDNGLTVLVTGCLIGKDNVRRKFTQSFFLAPQD---KGYFVLNDILRYVDEI 136 (334)
Q Consensus 87 s~~ggvlI~VtG~v~~~d~~~r~FsQtF~Lap~~---~~Y~V~NDiFR~vd~~ 136 (334)
++++||||+|+|.|+.++++.|+|+|+|+|+|++ ++|||+||||||+|+.
T Consensus 86 s~~~gilI~V~G~l~~~~~~~~~F~QtF~L~p~~~~~~~y~V~nDifR~~de~ 138 (140)
T 3q90_A 86 TLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEV 138 (140)
T ss_dssp CGGGCEEEEEEEEEECTTCCCEEEEEEEEEEECSSSTTCEEEEEEEEEEGGGC
T ss_pred eCCCCEEEEEEEEEecCCCCccEEEEEEEEeecCCCCCCEEEEEEEeEeehhh
Confidence 9999999999999999998899999999999996 7999999999999974
No 2
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=100.00 E-value=5.3e-37 Score=259.39 Aligned_cols=122 Identities=20% Similarity=0.338 Sum_probs=117.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCCCccceEEEEEEEEEEeCC
Q 037095 10 ALSPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNYNVQIFSADAQASYD 89 (334)
Q Consensus 10 ~~~a~~VG~~FV~qYY~~L~~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~~~~~~~~I~tvD~Q~s~~ 89 (334)
+|++++||++||++||++|+++|+.|++||+++|+|+|+|. .++|+++|.++|++||+++|+|+|.++|||++.+
T Consensus 4 ~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~d~qp~~~ 78 (127)
T 1gy6_A 4 KPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQ-----QFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPD 78 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHCSCSCEEEEEEEEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEECCc-----cccCHHHHHHHHHhCCCcceEEEEEEEEEEEeCC
Confidence 46899999999999999999999999999999999999986 8999999999999999988999999999999999
Q ss_pred CCEEEEEEEEEEeCCCCcceeEEEEEEEEeCCeEEEEccEEEeecCC
Q 037095 90 NGLTVLVTGCLIGKDNVRRKFTQSFFLAPQDKGYFVLNDILRYVDEI 136 (334)
Q Consensus 90 ggvlI~VtG~v~~~d~~~r~FsQtF~Lap~~~~Y~V~NDiFR~vd~~ 136 (334)
+||||+|+|.|+.++++.|+|+|+|+|+|++++|||+||||||+++.
T Consensus 79 ~~ili~V~G~~~~~~~~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~~ 125 (127)
T 1gy6_A 79 SCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHN 125 (127)
T ss_dssp SCEEEEEEEEEEETTSCCEEEEEEEEEEEETTEEEEEEEEEEECCCC
T ss_pred CcEEEEEEEEEEECCCCcceEeEEEEEEEeCCEEEEEEEEEEEEccc
Confidence 99999999999999889999999999999999999999999999864
No 3
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=100.00 E-value=6.8e-37 Score=259.48 Aligned_cols=121 Identities=29% Similarity=0.438 Sum_probs=115.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCCCccceEEEEEEEEEEeCC
Q 037095 10 ALSPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNYNVQIFSADAQASYD 89 (334)
Q Consensus 10 ~~~a~~VG~~FV~qYY~~L~~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~~~~~~~~I~tvD~Q~s~~ 89 (334)
+|++++||++||++||++|+++|+.|++||+++|+|+|+|. .++|+++|.++|++||+++|+|+|.++|||++++
T Consensus 8 ~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~ 82 (129)
T 1zo2_A 8 NPQFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWEDT-----QFQGQANIVNKFNSLNFQRVQFEITRVDCQPSPN 82 (129)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHHCCSCEEEEEEEEEEEECTB
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEECCc-----eeccHHHHHHHHHhCCCcceEEEEEEEEEEEeCC
Confidence 57899999999999999999999999999999999999986 8999999999999999998999999999999999
Q ss_pred CCEEEEEEEEEEeCCCCcceeEEEEEEEEeC-CeEEEEccEEEeecC
Q 037095 90 NGLTVLVTGCLIGKDNVRRKFTQSFFLAPQD-KGYFVLNDILRYVDE 135 (334)
Q Consensus 90 ggvlI~VtG~v~~~d~~~r~FsQtF~Lap~~-~~Y~V~NDiFR~vd~ 135 (334)
|||||+|+|.|+.++++.|+|+|+|+|+|++ ++|||+||||||+++
T Consensus 83 ~gilI~V~G~~~~~~~~~~~F~qtF~L~p~~~~~y~I~nD~fR~~~~ 129 (129)
T 1zo2_A 83 NGSIVFVTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFNDLFRLNLG 129 (129)
T ss_dssp SSEEEEEEEEEEETTCCCEEEEEEEEEEECSSSCEEEEEEEEEEC--
T ss_pred CcEEEEEEEEEEECCCCcceEEEEEEEEEcCCCcEEEEeEEEEEecC
Confidence 9999999999999998999999999999998 799999999999863
No 4
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=100.00 E-value=4.6e-37 Score=257.40 Aligned_cols=117 Identities=41% Similarity=0.664 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCcchhcccccCCCceec-cCCCCcccccccHHHHHHHHhcCCCccceEEEEEEEEEEeCCC
Q 037095 12 SPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSR-PDQSGSMTSVTTIKEINDMIVSLDYQNYNVQIFSADAQASYDN 90 (334)
Q Consensus 12 ~a~~VG~~FV~qYY~~L~~~p~~L~~fY~~~S~l~~-~g~~g~~~~~~G~~~I~~~i~sL~~~~~~~~I~tvD~Q~s~~g 90 (334)
++++||++||++||++|+++|+.|++||+++|.|+| +|. .++|+++|.++|++|||++|+|+|.++|||+++++
T Consensus 2 s~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~~~~~~~-----~~~G~~~I~~~l~~Lpf~~~~~~I~t~D~Qp~~~~ 76 (120)
T 3ujm_A 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGESK-----LVVGQREIHNRIQQLNFNDCHAKISQVDAQATLGN 76 (120)
T ss_dssp --CCHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTCC-----CEESHHHHHHHHHHHCCCSCEEEEEEEEEEEEGGG
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHhhhecccceEEEcCCc-----EecCHHHHHHHHHcCCCcceEEEEecccceEcCCC
Confidence 578999999999999999999999999999987665 454 79999999999999999999999999999999999
Q ss_pred CEEEEEEEEEEeCCCCcceeEEEEEEEEeC-CeEEEEccEEEee
Q 037095 91 GLTVLVTGCLIGKDNVRRKFTQSFFLAPQD-KGYFVLNDILRYV 133 (334)
Q Consensus 91 gvlI~VtG~v~~~d~~~r~FsQtF~Lap~~-~~Y~V~NDiFR~v 133 (334)
||||+|+|.|+.++++.|+|+|+|+|+|++ ++|||+||||||.
T Consensus 77 gili~V~G~l~~~~~~~r~F~QtF~L~p~~~~~y~V~nDifR~q 120 (120)
T 3ujm_A 77 GVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 120 (120)
T ss_dssp EEEEEEEEEEESTTCCCEEEEEEEEEEECSTTCEEEEEEEEEEC
T ss_pred CEEEEEEEEEEeCCCCCceEEEEEEEEEcCCCCEEEEEEEEecC
Confidence 999999999999998889999999999996 7999999999994
No 5
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=100.00 E-value=2.9e-36 Score=254.20 Aligned_cols=119 Identities=26% Similarity=0.460 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCCCccceEEEEEEEEEEeC-CC
Q 037095 12 SPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNYNVQIFSADAQASY-DN 90 (334)
Q Consensus 12 ~a~~VG~~FV~qYY~~L~~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~~~~~~~~I~tvD~Q~s~-~g 90 (334)
++++||+.||++||++|+++|+.|++||+++|+|+|+|. .++|+++|.++|.+||+++|+|+|.++|||+++ +|
T Consensus 4 ~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~~ 78 (125)
T 1gy7_A 4 DFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETS-----QLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYG 78 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTS
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCcEEEECCc-----EecCHHHHHHHHHhCCCcceEEEEEEEEEEEecCCC
Confidence 589999999999999999999999999999999999987 899999999999999999999999999999996 58
Q ss_pred CEEEEEEEEEEeCCC-CcceeEEEEEEEEeCCeEEEEccEEEeecC
Q 037095 91 GLTVLVTGCLIGKDN-VRRKFTQSFFLAPQDKGYFVLNDILRYVDE 135 (334)
Q Consensus 91 gvlI~VtG~v~~~d~-~~r~FsQtF~Lap~~~~Y~V~NDiFR~vd~ 135 (334)
||||+|+|.|+.+++ +.|+|+|+|+|+|++++|||+||||||+++
T Consensus 79 gili~V~G~~~~~~~~~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~ 124 (125)
T 1gy7_A 79 DVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124 (125)
T ss_dssp CEEEEEEEEEEETTCSSCEEEEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred eEEEEEEEEEEECCCCCCccEeEEEEEEEeCCEEEEEEEEEEEecC
Confidence 999999999999887 889999999999999999999999999974
No 6
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=100.00 E-value=2.6e-35 Score=256.55 Aligned_cols=128 Identities=20% Similarity=0.364 Sum_probs=115.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcchhcccccCCCceeccCCCCc----------ccccccHHHHHHHHhcC--CCccceE
Q 037095 10 ALSPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGS----------MTSVTTIKEINDMIVSL--DYQNYNV 77 (334)
Q Consensus 10 ~~~a~~VG~~FV~qYY~~L~~~p~~L~~fY~~~S~l~~~g~~g~----------~~~~~G~~~I~~~i~sL--~~~~~~~ 77 (334)
.+++++||++||++||++|+++|+.|++||+++|+|+|++..+. ...++|+++|.++|++| ||++|+|
T Consensus 8 ~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~h 87 (154)
T 2qiy_A 8 GVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKL 87 (154)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEccccccccccccccccceEeeCHHHHHHHHHhccCCCCceEE
Confidence 47899999999999999999999999999999999999843211 45889999999999999 9999999
Q ss_pred EEEEEEEEEeCC--CCEEEEEEEEEEeCCCCcceeEEEEEEEEeC--CeEEEEccEEEeecCCC
Q 037095 78 QIFSADAQASYD--NGLTVLVTGCLIGKDNVRRKFTQSFFLAPQD--KGYFVLNDILRYVDEID 137 (334)
Q Consensus 78 ~I~tvD~Q~s~~--ggvlI~VtG~v~~~d~~~r~FsQtF~Lap~~--~~Y~V~NDiFR~vd~~~ 137 (334)
+|.++|||++++ +||||+|+|.|+.++++.|+|+|||+|+|++ ++|||+||||||++++.
T Consensus 88 ~I~s~D~q~~~~~~~~ilI~V~G~~~~~~~~~r~F~qtFvL~p~~~~~~y~I~ND~fr~~~~~~ 151 (154)
T 2qiy_A 88 KLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSNGSTFDITNDIIRFISNSF 151 (154)
T ss_dssp EEEEEEEEEESGGGCEEEEEEEEEEEETTCCCEEEEEEEEEEECC---CEEEEEEEEEEECC--
T ss_pred EEEEEEEEEccCCCCEEEEEEEEEEEECCCCCceEEEEEEEEEeCCCCcEEEEEEEEEEEccee
Confidence 999999999987 9999999999999988999999999999997 48999999999999864
No 7
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-34 Score=253.34 Aligned_cols=116 Identities=24% Similarity=0.369 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCCCccceEEEEEEEEEEeC---
Q 037095 12 SPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNYNVQIFSADAQASY--- 88 (334)
Q Consensus 12 ~a~~VG~~FV~qYY~~L~~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~~~~~~~~I~tvD~Q~s~--- 88 (334)
.+.+||++||++||++|+++|+.|++||+++|+|+|+|. .+.|+++|.++|++||+ ++++|.++|||+++
T Consensus 32 ~a~~vg~~FV~qYY~~~d~~R~~L~~fY~d~S~ls~~g~-----~~~G~~~I~~~l~~Lp~--~~h~I~s~D~qp~~~~~ 104 (154)
T 3nv0_B 32 ELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGN-----PINGYDSICEFMKALPS--TQHDIQSLDAQRLPEGV 104 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCC--EEEEEEEEEEEECCTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHhcCCcEEEECCe-----ecccHHHHHHHHHhCCC--eEEEEEEEEEEEcCccc
Confidence 467899999999999999999999999999999999986 78999999999999996 59999999999998
Q ss_pred ----CCCEEEEEEEEEEeCCCCcceeEEEEEEEEeCCeEEEEccEEEeec
Q 037095 89 ----DNGLTVLVTGCLIGKDNVRRKFTQSFFLAPQDKGYFVLNDILRYVD 134 (334)
Q Consensus 89 ----~ggvlI~VtG~v~~~d~~~r~FsQtF~Lap~~~~Y~V~NDiFR~vd 134 (334)
++||||+|+|.|+.++++.|+|+|+|+|+|++++|||+||||||+|
T Consensus 105 ~~q~~~~ilI~V~G~l~~~~~~~r~F~QtFvL~p~~~~y~V~NDifR~vd 154 (154)
T 3nv0_B 105 TGDMSGGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFRYVD 154 (154)
T ss_dssp CGGGTTCEEEEEEEEEEETTSCCEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred cCCCCCeEEEEEEEEEEECCCCceeEEEEEEEEEeCCEEEEEeeEEEecC
Confidence 6799999999999998889999999999999999999999999986
No 8
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=100.00 E-value=2.1e-33 Score=240.93 Aligned_cols=118 Identities=20% Similarity=0.342 Sum_probs=111.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCCCccceEEEEEEEEEEeC--
Q 037095 11 LSPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNYNVQIFSADAQASY-- 88 (334)
Q Consensus 11 ~~a~~VG~~FV~qYY~~L~~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~~~~~~~~I~tvD~Q~s~-- 88 (334)
..+.+||++||++||++|+++|+.|++||+++|+|+|+|. .++|.++|.++|.+||++ +|+|.++|||+++
T Consensus 11 ~~a~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~--~h~i~s~d~q~~~~~ 83 (140)
T 1jkg_A 11 DQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGN-----AVSGQESLSEFFEMLPSS--EFQISVVDCQPVHDE 83 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCCE--EEEEEEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHhcCCCcEEEECCe-----eecCHHHHHHHHHhCCCc--eeEEEEEEEEEcCCc
Confidence 4578999999999999999999999999999999999986 799999999999999998 7999999999996
Q ss_pred ----CCCEEEEEEEEEEeCCCCcceeEEEEEEEEeC----CeEEEEccEEEeecC
Q 037095 89 ----DNGLTVLVTGCLIGKDNVRRKFTQSFFLAPQD----KGYFVLNDILRYVDE 135 (334)
Q Consensus 89 ----~ggvlI~VtG~v~~~d~~~r~FsQtF~Lap~~----~~Y~V~NDiFR~vd~ 135 (334)
++||||+|+|.|+.+++..|+|+|+|+|+|++ ++|||+||||||++.
T Consensus 84 ~~~~~~~ilI~V~G~~~~~~~~~r~F~qtF~L~p~~~p~~~~~~I~nD~frl~~~ 138 (140)
T 1jkg_A 84 ATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDW 138 (140)
T ss_dssp TSTTCCEEEEEEEEEEEETTSCCEEEEEEEEEEEECCSSSCEEEEEEEEEEETTT
T ss_pred ccCCCCeEEEEEEEEEEECCCCceeeeEEEEEEecCCCCCCeEEEEeeEEEeecC
Confidence 58999999999999988899999999999974 789999999999986
No 9
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=99.89 E-value=7.9e-23 Score=190.84 Aligned_cols=124 Identities=20% Similarity=0.234 Sum_probs=107.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcC-cchhcccccCCCceeccCCC-C------c--------------------c-cccccHH
Q 037095 11 LSPQVVGNAFVEQYYCILHQN-PDVVHRFYQESSMVSRPDQS-G------S--------------------M-TSVTTIK 61 (334)
Q Consensus 11 ~~a~~VG~~FV~qYY~~L~~~-p~~L~~fY~~~S~l~~~g~~-g------~--------------------~-~~~~G~~ 61 (334)
..+..+|..||++||.+||++ |..|.++|+++|+|+|.... + . + ..++|.+
T Consensus 12 ~~~~~~~~~Fv~~Yy~~fD~~~R~~L~~lY~~~s~fS~~~~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~~ 91 (250)
T 1jkg_B 12 ENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRL 91 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEEEEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESHH
T ss_pred HHHHHHHHHHHHHHHHHHCcCcHHHHHHhhCcCcEEEEEeCCCCCCccccchhhhhhhccchhcccchhhhhhhhccCHH
Confidence 456799999999999999998 99999999999999987431 1 0 0 3678999
Q ss_pred HHHHHHhcCCCccceEEEE--EEEEEEeCCCCEEEEEEEEEEeCC----CCcceeEEEEEEEEe-CCeEEEEccEEEeec
Q 037095 62 EINDMIVSLDYQNYNVQIF--SADAQASYDNGLTVLVTGCLIGKD----NVRRKFTQSFFLAPQ-DKGYFVLNDILRYVD 134 (334)
Q Consensus 62 ~I~~~i~sL~~~~~~~~I~--tvD~Q~s~~ggvlI~VtG~v~~~d----~~~r~FsQtF~Lap~-~~~Y~V~NDiFR~vd 134 (334)
+|.++|.+||.+ +|.+. ++|||+..+++|+|+|+|.++..+ +..|.|+|||+|.|. +++|+|+||+||+.+
T Consensus 92 ~I~~~l~~LP~t--~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~l~l~~ 169 (250)
T 1jkg_B 92 NVVAFLNELPKT--QHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRN 169 (250)
T ss_dssp HHHHHHTTSCCE--EECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEEEE
T ss_pred HHHHHHHhCCCe--eEeccceEEeeeecCCCEEEEEEEEEEEECCCCCCCCceeeEEEEEEEECCCCcEEEEeeEEEEEC
Confidence 999999999955 88888 899999988899999999999866 568999999999996 468999999999997
Q ss_pred CC
Q 037095 135 EI 136 (334)
Q Consensus 135 ~~ 136 (334)
..
T Consensus 170 ~s 171 (250)
T 1jkg_B 170 AS 171 (250)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 10
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.88 E-value=1.2e-22 Score=186.60 Aligned_cols=125 Identities=14% Similarity=0.246 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcchhcccccCCCceeccCCCCc----------------------------------ccc
Q 037095 11 LSPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGS----------------------------------MTS 56 (334)
Q Consensus 11 ~~a~~VG~~FV~qYY~~L~~~p~~L~~fY~~~S~l~~~g~~g~----------------------------------~~~ 56 (334)
.....++..||++||+++|.+|..|..||+++|+|+|.+.... ...
T Consensus 8 ~~~~~~~~~Fv~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~l 87 (221)
T 1of5_A 8 DALGQSSTDFATNFLNLWDNNREQLLNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRL 87 (221)
T ss_dssp CTTCHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEEECCC--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHhhCcCcEEEEEecCCCCcccccccccccchhhhhhhccchhcccchhhhhhhh
Confidence 5578999999999999999999999999999999998753100 036
Q ss_pred cccHHHHHHHHhcCCCccceEEE------EEEEEEEeCC-CCEEEEEEEEEEeCCC------------------------
Q 037095 57 VTTIKEINDMIVSLDYQNYNVQI------FSADAQASYD-NGLTVLVTGCLIGKDN------------------------ 105 (334)
Q Consensus 57 ~~G~~~I~~~i~sL~~~~~~~~I------~tvD~Q~s~~-ggvlI~VtG~v~~~d~------------------------ 105 (334)
+.|.++|.++|.+||.+ +|.| .++|||+... +||+|+|+|.++..+.
T Consensus 88 ~~G~~~I~~~l~~LPkT--~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (221)
T 1of5_A 88 SIGQESINSIFKTLPKT--KHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGY 165 (221)
T ss_dssp CBHHHHHHHHHHHSCCE--EECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC--------------------------
T ss_pred ccCHHHHHHHHHhCCCe--eEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCcccccccccccccccccccccccc
Confidence 78999999999999955 8999 6999999965 7999999999987554
Q ss_pred --------CcceeEEEEEEEEeCCeEEEEccEEEeecCCC
Q 037095 106 --------VRRKFTQSFFLAPQDKGYFVLNDILRYVDEID 137 (334)
Q Consensus 106 --------~~r~FsQtF~Lap~~~~Y~V~NDiFR~vd~~~ 137 (334)
..|.|+|||+|.|.+++|+|+||+||+.....
T Consensus 166 ~~~~~~~~~~rsF~RTFvL~P~~~~~~I~nD~l~ir~~s~ 205 (221)
T 1of5_A 166 NSTSNNKLSKKSFDRTWVIVPMNNSVIIASDLLTVRAYST 205 (221)
T ss_dssp ---CCSCCEEEEEEEEEEEEEETTEEEEEEEEEEEEECCC
T ss_pred cccccccCCccceEEEEEEEecCCeEEEEeeEEEeecCCC
Confidence 46899999999999889999999999987543
No 11
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=99.85 E-value=1.4e-21 Score=179.18 Aligned_cols=124 Identities=18% Similarity=0.239 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcchhcccccCCCceeccCCCC---------------c----------------------
Q 037095 11 LSPQVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSG---------------S---------------------- 53 (334)
Q Consensus 11 ~~a~~VG~~FV~qYY~~L~~~p~~L~~fY~~~S~l~~~g~~g---------------~---------------------- 53 (334)
.....++..||++||+++|.+|..|..||+++|+|+|..... .
T Consensus 11 ~~~~~~~~~Fl~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~ 90 (219)
T 1q40_B 11 EDSRNLATNFIANYLKLWDANRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARM 90 (219)
T ss_dssp --CHHHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHhhccccEEEEEecCCCCccccccccccccccchhhhhhhccchhcccchhhhh
Confidence 457889999999999999999999999999999999874210 0
Q ss_pred ccccccHHHHHHHHhcCCCccceEEE------EEEEEEEeC-CCCEEEEEEEEEEeCCC---------------------
Q 037095 54 MTSVTTIKEINDMIVSLDYQNYNVQI------FSADAQASY-DNGLTVLVTGCLIGKDN--------------------- 105 (334)
Q Consensus 54 ~~~~~G~~~I~~~i~sL~~~~~~~~I------~tvD~Q~s~-~ggvlI~VtG~v~~~d~--------------------- 105 (334)
...+.|.++|.++|.+||.+ +|.| .++|||+.. .+||||+|+|.++..+.
T Consensus 91 ~~l~~G~~~I~~~l~~LPkT--~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~ 168 (219)
T 1q40_B 91 AKLSIGQEQIYKSFQQLPKT--RHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYH 168 (219)
T ss_dssp HTCEEHHHHHHHHHHTSCEE--ECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCSS
T ss_pred hhhccCHHHHHHHHHHCCCe--eEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCCccccccccccccccccccccc
Confidence 01577999999999999955 8999 699999663 57999999999986432
Q ss_pred ----------CcceeEEEEEEEEe-CCeEEEEccEEEeecCC
Q 037095 106 ----------VRRKFTQSFFLAPQ-DKGYFVLNDILRYVDEI 136 (334)
Q Consensus 106 ----------~~r~FsQtF~Lap~-~~~Y~V~NDiFR~vd~~ 136 (334)
..|.|+|||+|.|. +++|+|+||+||+....
T Consensus 169 ~~~~~~~~~~~~rsF~RtFvL~P~~~~~~~I~nD~l~ir~~~ 210 (219)
T 1q40_B 169 SGPKHKRIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRPYT 210 (219)
T ss_dssp SSSCCCCCCCCCEEEEEEEEEECC---CCEEEEEEEEEEECC
T ss_pred cccccccccCCccceEEEEEEEECCCCcEEEEeeEEEEecCC
Confidence 57999999999998 56899999999999754
No 12
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.75 E-value=1.1e-17 Score=152.00 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=102.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcC-----cchhccccc-CCCceec--cCC---------------------CC---------
Q 037095 11 LSPQVVGNAFVEQYYCILHQN-----PDVVHRFYQ-ESSMVSR--PDQ---------------------SG--------- 52 (334)
Q Consensus 11 ~~a~~VG~~FV~qYY~~L~~~-----p~~L~~fY~-~~S~l~~--~g~---------------------~g--------- 52 (334)
.....++..|+++||.++|.+ |..|..+|+ +.|+++. +-. ..
T Consensus 10 ~~~~~~v~~Fl~~yf~~yD~~d~~~~R~~Ll~~Y~~~~a~FSltv~~~~~p~~~~~~~~~~~~~~Y~~~SRNl~k~~~~~ 89 (205)
T 3nv0_A 10 DEVRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYRMYLRTSHNVLNQEYFA 89 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTHHHHGGGGGGGBCSSSCEEEEEEECCCCSSSCCCCSCHHHHHHHHHTCCCGGGCCTTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHhhCccCcEEEEEecCCCCcccccccccccchhhhhhhccccccccccH
Confidence 456789999999999999987 999999999 6887653 100 00
Q ss_pred --c-ccccccHHHHHHHHhcCCCccceEEEEE--EEEEEeCCCCEEEEEEEEEEeC---------CCCcceeEEEEEEEE
Q 037095 53 --S-MTSVTTIKEINDMIVSLDYQNYNVQIFS--ADAQASYDNGLTVLVTGCLIGK---------DNVRRKFTQSFFLAP 118 (334)
Q Consensus 53 --~-~~~~~G~~~I~~~i~sL~~~~~~~~I~t--vD~Q~s~~ggvlI~VtG~v~~~---------d~~~r~FsQtF~Lap 118 (334)
. ....+|.++|.++|.+||.+ +|.+.+ +|||+..+++++|+|+|.++.. +...|.|+|+|+|.|
T Consensus 90 ~~r~~~L~~G~~~I~~~L~~LP~T--~H~~~s~~vD~~p~~~~~l~i~V~G~f~e~~~~~~~~~~~~~~r~FsRtFiL~P 167 (205)
T 3nv0_A 90 ANRASRISHGAMDIVVALSRLPAT--IHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAP 167 (205)
T ss_dssp TSSCCSCEEHHHHHHHHHHHSCCE--EECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSCCSCSTTCEEEEEEEEEEE
T ss_pred HHHHHHHhhCHHHHHHHHHhCCCe--EEecCceEEEEEEeCCCeEEEEEEEEEEEcccccccccCCCCCceeEEEEEEEE
Confidence 0 02457999999999999966 899885 8999999899999999999975 346799999999999
Q ss_pred eC-CeEEEEccEEEeecCC
Q 037095 119 QD-KGYFVLNDILRYVDEI 136 (334)
Q Consensus 119 ~~-~~Y~V~NDiFR~vd~~ 136 (334)
.+ ++|+|+||+|.+....
T Consensus 168 ~~~g~~~I~ND~L~Ir~~s 186 (205)
T 3nv0_A 168 RGEGKVAIVSDQLFISSMS 186 (205)
T ss_dssp CSTTCEEEEEEEEEEECCC
T ss_pred CCCCcEEEEecEEEeeCCC
Confidence 86 6899999999987643
No 13
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=99.52 E-value=1.3e-14 Score=129.06 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcc-----hhc------ccc----cCCCceeccCCCCccccc------ccHHHHHHHHhc
Q 037095 11 LSPQVVGNAFVEQYYCILHQNPD-----VVH------RFY----QESSMVSRPDQSGSMTSV------TTIKEINDMIVS 69 (334)
Q Consensus 11 ~~a~~VG~~FV~qYY~~L~~~p~-----~L~------~fY----~~~S~l~~~g~~g~~~~~------~G~~~I~~~i~s 69 (334)
-+..+.+..|++.||..||+.|. .|. ++| .+.|.++|+|. .+ .|+++|.++|..
T Consensus 23 ~~~~r~aE~F~K~yyasLD~~r~~~~~~ql~~v~~f~~ly~~~l~~~a~liwNGn-----p~~~~~~~~gr~~fqk~w~~ 97 (201)
T 1q42_A 23 QDPTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIVNGQ-----PIIPSPQEDCKLQFQKKWLQ 97 (201)
T ss_dssp CCGGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEETTE-----ECCCCSSCCHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHhcccccccchhhccchhHHHHHhccccCCccEEEEcCc-----ccccccccccHHHHHHHHHh
Confidence 35678899999999999998886 777 788 78899999997 67 899999999999
Q ss_pred CCCccceEEEEEEEEEEeCC-CCEEEEEEEEEEeCCCCcceeEEEEEEEEe
Q 037095 70 LDYQNYNVQIFSADAQASYD-NGLTVLVTGCLIGKDNVRRKFTQSFFLAPQ 119 (334)
Q Consensus 70 L~~~~~~~~I~tvD~Q~s~~-ggvlI~VtG~v~~~d~~~r~FsQtF~Lap~ 119 (334)
||.+ .|.|.++|||++++ +.+||.|.|.|+++++.+++|.|+|.|..+
T Consensus 98 lP~S--qHqL~SlDahpIpGq~T~lI~asGkVrFDesgr~~fgQsf~Lta~ 146 (201)
T 1q42_A 98 TPLS--SHQLTSYDGHLIPGTGTFVVHFSAKVRFDQSGRNRLGESADLFQE 146 (201)
T ss_dssp SCCE--EEEEEEEEEEEETTTTEEEEEEEEEEEEBCSSCCTTSCCC-----
T ss_pred CCCc--ceeeeeeecceeCCCcEEEEEEeEEEEECCCCcCcCCCcEEEecc
Confidence 9976 99999999999974 679999999999999999999999999866
No 14
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.24 E-value=3.3e-11 Score=106.13 Aligned_cols=101 Identities=13% Similarity=0.062 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCc-----chhcccccCCCceeccCCCCcccccccHHHHHHHHh-cCCCccceEEEEEEEEE
Q 037095 12 SPQVVGNAFVEQYYCILHQNP-----DVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIV-SLDYQNYNVQIFSADAQ 85 (334)
Q Consensus 12 ~a~~VG~~FV~qYY~~L~~~p-----~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~-sL~~~~~~~~I~tvD~Q 85 (334)
.-.+.+..||++||..|+..+ ..|..|+...+.++++|. .+-+..+..+.|. .++.+ +|+|.++|||
T Consensus 14 ~~~~aae~FVk~~y~aLd~~r~~~l~~~lssF~p~~~~Ii~NG~-----p~a~p~~fqeiw~~Q~p~T--~hel~S~D~H 86 (184)
T 1of5_B 14 NQAQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNCRIIFNAT-----PFAQATVFLQMWQNQVVQT--QHALTGVDYH 86 (184)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-CCEEETTE-----EESCHHHHHHHHHHHSCCC--EEEEEEEEEE
T ss_pred cchhHHHHHHHHHHHHhcccccchhhhhhhhcCCCCceEEECCe-----EcCCHHHHHHHHHhcCCCc--eEEEEeEEEE
Confidence 345789999999999999988 889999888889999997 7778889989898 88866 9999999999
Q ss_pred EeC-CCCEEEEEEEEEEeCCCCcceeEEEEEEEEe
Q 037095 86 ASY-DNGLTVLVTGCLIGKDNVRRKFTQSFFLAPQ 119 (334)
Q Consensus 86 ~s~-~ggvlI~VtG~v~~~d~~~r~FsQtF~Lap~ 119 (334)
-+. .|+|+|+|+|.|++++..+-+|.|+|+|.|.
T Consensus 87 VIngsgsivv~VsgkVRFdEsgrd~fgEtfvLvpn 121 (184)
T 1of5_B 87 AIPGSGTLICNVNCKVRFDESGRDKMGQDATVPIQ 121 (184)
T ss_dssp EETTTTEEEEEEEEEEECC----------------
T ss_pred EECCCCeEEEEEEEEEEECCCCCCCCCCeEEECCC
Confidence 886 4689999999999987655699999999987
No 15
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.62 E-value=2.2e-08 Score=78.01 Aligned_cols=39 Identities=28% Similarity=0.419 Sum_probs=34.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEeee
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQVRS 332 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~vRs 332 (334)
...++|||+||||++|+++|+++|++||.|....|..+|
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~s 47 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 47 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCC
Confidence 357899999999999999999999999999998876554
No 16
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.59 E-value=4e-08 Score=78.08 Aligned_cols=37 Identities=27% Similarity=0.515 Sum_probs=33.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
-+|++|||+|||+++|+++|+++|++||.|....|..
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~ 53 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR 53 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeee
Confidence 4688999999999999999999999999999887753
No 17
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=9.2e-08 Score=77.87 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=32.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
...+||||||||++|+++|+++|++||.|+...|.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~ 49 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML 49 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 56899999999999999999999999999998764
No 18
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.43 E-value=2.3e-07 Score=70.80 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=34.0
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 293 AAKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 293 e~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
+....+|||+|||+++|+++|+++|++||.|....|..
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 45 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM 45 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEee
Confidence 34678999999999999999999999999999887753
No 19
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.40 E-value=2.1e-07 Score=75.38 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=32.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 296 GHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 296 ~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
..+|||||||+++|+++|+++|++||.|....|..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~ 39 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 39 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEee
Confidence 46899999999999999999999999999988754
No 20
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.40 E-value=1.5e-07 Score=72.16 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=33.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEee
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQVR 331 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~vR 331 (334)
...+|||+|||+++|+++|+++|++||.|....|.-+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 40 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP 40 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC
Confidence 4689999999999999999999999999998776543
No 21
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=3.5e-07 Score=75.96 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=32.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
..+.+|||||||+++|+++|+++|++||.|+...|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~ 64 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML 64 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe
Confidence 357899999999999999999999999999988763
No 22
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.38 E-value=1.4e-07 Score=77.58 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=34.5
Q ss_pred CCcceEEEeCCCCC-CCHHHHHHHhhcCCceeeceEEeeec
Q 037095 294 AKGHSIFVGNLPDS-ATVDQLKLIFEQFGPVKPDGIQVRSQ 333 (334)
Q Consensus 294 ~~~~~iyV~nLp~~-~t~~~l~~~F~~fG~v~~~~i~vRs~ 333 (334)
..+.+||||||||+ +|+++|+++|++||.|....| +|++
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~~~k 62 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-MRMK 62 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-ETTT
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-ecCC
Confidence 35789999999998 999999999999999999887 4553
No 23
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.37 E-value=2e-07 Score=75.26 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=32.2
Q ss_pred CcceEEEeCCCC-CCCHHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPD-SATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~-~~t~~~l~~~F~~fG~v~~~~i 328 (334)
.+.+|||+|||+ ++|+++|+++|++||.|....|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i 48 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI 48 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE
Confidence 578999999999 9999999999999999999876
No 24
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.35 E-value=8.1e-07 Score=71.58 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=33.2
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 293 AAKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 293 e~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
..+.++|||+|||+++|+++|+++|++||.|....|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~ 73 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVF 73 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 3467899999999999999999999999999987664
No 25
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.35 E-value=4e-07 Score=73.49 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=31.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
.+..|||||||+++|+++|+++|++||.|++..|
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i 53 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVV 53 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE
Confidence 4678999999999999999999999999998766
No 26
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=4.5e-07 Score=72.75 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=31.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
..+.+|||+|||+++|+++|+++|++||.|....|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i 47 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM 47 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 35689999999999999999999999999997754
No 27
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.34 E-value=3.9e-07 Score=73.07 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=32.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~ 44 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 44 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEE
Confidence 456899999999999999999999999999987764
No 28
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.32 E-value=6.5e-07 Score=72.09 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=31.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
...+|||+|||+++|+++|+++|++||.|....|
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i 47 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMM 47 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE
Confidence 4679999999999999999999999999998654
No 29
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.29 E-value=6.9e-07 Score=68.99 Aligned_cols=35 Identities=31% Similarity=0.572 Sum_probs=31.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
....+|||+|||+++|+++|+++|++||.|....|
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~ 42 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDI 42 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 35789999999999999999999999999987665
No 30
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.29 E-value=6.1e-07 Score=67.48 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=31.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 296 GHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 296 ~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
+++|||+|||+++++++|+++|++||.|....|.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~ 34 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVM 34 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE
Confidence 4689999999999999999999999999987774
No 31
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.28 E-value=1e-06 Score=69.37 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=32.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~ 48 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII 48 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 467899999999999999999999999999987664
No 32
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.28 E-value=6.2e-07 Score=71.10 Aligned_cols=36 Identities=14% Similarity=0.315 Sum_probs=30.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||||||+++|+++|+++|++||.|.-..|.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~ 42 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIR 42 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEE
Confidence 356689999999999999999999999976544444
No 33
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.28 E-value=9.7e-07 Score=69.56 Aligned_cols=37 Identities=19% Similarity=0.427 Sum_probs=33.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
...++|||+|||+++|+++|+++|++||.|....|..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 49 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLR 49 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 3578999999999999999999999999999877653
No 34
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=1.1e-06 Score=66.57 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=32.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~ 45 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV 45 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE
Confidence 356899999999999999999999999999876653
No 35
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.27 E-value=7.6e-07 Score=71.10 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=32.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
..++|||+|||+++|+++|+++|++||.|....|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~ 48 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVY 48 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEe
Confidence 46899999999999999999999999999987764
No 36
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.26 E-value=7e-07 Score=67.78 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=32.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
+.++|||+|||+++|+++|+++|++||.|....|..
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~ 38 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPV 38 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe
Confidence 467999999999999999999999999998776643
No 37
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.26 E-value=3.7e-07 Score=71.14 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=30.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCC-ceeeceEE
Q 037095 297 HSIFVGNLPDSATVDQLKLIFEQFG-PVKPDGIQ 329 (334)
Q Consensus 297 ~~iyV~nLp~~~t~~~l~~~F~~fG-~v~~~~i~ 329 (334)
..|||+|||+++|+++|+++|++|| .|+..+|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~ 35 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLM 35 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEE
Confidence 5799999999999999999999999 78887763
No 38
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=6.1e-07 Score=69.61 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=32.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEee
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQVR 331 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~vR 331 (334)
..++|||+|||+++|+++|+++|++||.|...+..++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~ 50 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNT 50 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeec
Confidence 4689999999999999999999999999998753333
No 39
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=8.8e-07 Score=69.69 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=33.7
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 293 AAKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 293 e~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
+....+|||+|||+++|+++|+++|++||.|....|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 49 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMIT 49 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEe
Confidence 34678999999999999999999999999999877653
No 40
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.25 E-value=1.4e-06 Score=68.51 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=33.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
....+|||+|||+++|+++|+++|++||.|....|..
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 49 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 49 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEe
Confidence 3568999999999999999999999999999877654
No 41
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=1.1e-06 Score=68.54 Aligned_cols=36 Identities=31% Similarity=0.560 Sum_probs=32.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 43 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMI 43 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 356899999999999999999999999999987764
No 42
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=9.6e-07 Score=69.47 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=33.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
.+..+|||+|||+++|+++|+++|++||.|....|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 49 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM 49 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc
Confidence 4678999999999999999999999999999877654
No 43
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.25 E-value=6.8e-07 Score=71.80 Aligned_cols=37 Identities=32% Similarity=0.498 Sum_probs=31.1
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 293 AAKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 293 e~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
..++.+|||+|||+++|+++|+++|++||.|....|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~ 58 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVM 58 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEE
Confidence 3467899999999999999999999999999987664
No 44
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=7.1e-07 Score=68.65 Aligned_cols=35 Identities=31% Similarity=0.522 Sum_probs=32.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
....+|||+|||+++|+++|+++|++||.|....|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~ 41 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDV 41 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEE
Confidence 35789999999999999999999999999988765
No 45
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.25 E-value=8.8e-07 Score=68.94 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=32.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
+..+|||+|||+++|+++|+++|++||.|....|..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 39 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISK 39 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 468999999999999999999999999999887754
No 46
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.25 E-value=1.2e-06 Score=72.42 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=30.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeec
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPD 326 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~ 326 (334)
....+|||||||+++|+++|+++|++||.|...
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~ 53 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSS 53 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccee
Confidence 356799999999999999999999999999773
No 47
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.24 E-value=1e-06 Score=69.53 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=32.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 48 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLP 48 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEe
Confidence 457899999999999999999999999999987764
No 48
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.24 E-value=1e-06 Score=69.12 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=32.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
.+++|||+|||+++|+++|+++|++||.|....|.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~ 60 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY 60 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe
Confidence 46899999999999999999999999999887664
No 49
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=1e-06 Score=69.92 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=29.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceee
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKP 325 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~ 325 (334)
...++|||+||||++|+++|+++|++||.|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~ 44 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN 44 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcce
Confidence 45789999999999999999999999999975
No 50
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.23 E-value=1.1e-06 Score=71.09 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=32.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
...+|||+|||+++|+++|+++|++||.|....|..
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~ 40 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILL 40 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEE
Confidence 467999999999999999999999999999987753
No 51
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.23 E-value=1.4e-06 Score=66.95 Aligned_cols=36 Identities=36% Similarity=0.378 Sum_probs=32.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
..++|||+|||+++|+++|+++|++||.|....|..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~ 42 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM 42 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc
Confidence 568999999999999999999999999999877653
No 52
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=1.8e-06 Score=69.48 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=33.2
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 293 AAKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 293 e~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
+...++|||+|||+++|+++|+++|++||.|....|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 50 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVI 50 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEE
Confidence 3467899999999999999999999999999987764
No 53
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=1.2e-06 Score=68.85 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=32.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~ 46 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIP 46 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 357899999999999999999999999999887664
No 54
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.22 E-value=5.8e-07 Score=68.50 Aligned_cols=36 Identities=33% Similarity=0.472 Sum_probs=32.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
+..+|||+|||+++|+++|+++|++||.|....|..
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 40 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILC 40 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe
Confidence 467999999999999999999999999999877653
No 55
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.22 E-value=1e-06 Score=70.61 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=32.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~ 62 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII 62 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEEC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEE
Confidence 467899999999999999999999999999876653
No 56
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.22 E-value=1e-06 Score=69.99 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=32.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~ 48 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVV 48 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 357899999999999999999999999999877664
No 57
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.22 E-value=1.1e-06 Score=66.73 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=32.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
..++|||+|||+++|+++|+++|++||.|....|..
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 40 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVK 40 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEe
Confidence 467999999999999999999999999998877643
No 58
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.22 E-value=1.2e-06 Score=70.36 Aligned_cols=37 Identities=24% Similarity=0.461 Sum_probs=33.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
....+|||+|||+++|+++|+++|++||.|....|..
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 59 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFI 59 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 3578999999999999999999999999999877654
No 59
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.22 E-value=7.9e-07 Score=70.19 Aligned_cols=36 Identities=25% Similarity=0.533 Sum_probs=32.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 46 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 46 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE
Confidence 357899999999999999999999999999987664
No 60
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.21 E-value=8.9e-07 Score=69.12 Aligned_cols=35 Identities=29% Similarity=0.531 Sum_probs=31.6
Q ss_pred CCcceEEEeCCCC-CCCHHHHHHHhhcCCceeeceE
Q 037095 294 AKGHSIFVGNLPD-SATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 294 ~~~~~iyV~nLp~-~~t~~~l~~~F~~fG~v~~~~i 328 (334)
....+|||+|||+ ++|+++|+++|++||.|....|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i 43 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI 43 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE
Confidence 3578999999999 9999999999999999998665
No 61
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.21 E-value=1.2e-06 Score=66.20 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=32.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
...+|||+|||+++++++|+++|++||.|....|.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~ 40 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIP 40 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEE
Confidence 56899999999999999999999999999887664
No 62
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.21 E-value=8.8e-07 Score=67.16 Aligned_cols=36 Identities=11% Similarity=0.279 Sum_probs=32.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
.+.+|||+|||+++++++|+++|++||.|....|..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~ 39 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAIL 39 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 468999999999999999999999999999877653
No 63
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=2.2e-06 Score=66.99 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=33.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
....+|||+|||+++|+++|+++|++||.|....|..
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 51 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVT 51 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEE
Confidence 3568999999999999999999999999998877653
No 64
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.21 E-value=1.5e-06 Score=69.62 Aligned_cols=36 Identities=25% Similarity=0.538 Sum_probs=33.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
.+.++|||+|||+++|+++|+++|++||.|....|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 48 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVV 48 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 467899999999999999999999999999987774
No 65
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=1.4e-06 Score=66.92 Aligned_cols=35 Identities=37% Similarity=0.613 Sum_probs=32.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
...+|||+|||+++|+++|+++|++||.|....|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~ 41 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII 41 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE
Confidence 56899999999999999999999999999987664
No 66
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.21 E-value=1.2e-06 Score=70.52 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=33.2
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 293 AAKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 293 e~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
+....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 64 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL 64 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 3467899999999999999999999999999887664
No 67
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=1.1e-06 Score=69.26 Aligned_cols=37 Identities=32% Similarity=0.368 Sum_probs=33.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
.+..+|||+|||+++|+++|+++|++||.|....|..
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~ 50 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMK 50 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee
Confidence 4678999999999999999999999999999877643
No 68
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.21 E-value=1.2e-06 Score=67.68 Aligned_cols=37 Identities=30% Similarity=0.410 Sum_probs=32.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
....+|||+|||+++++++|+++|++||.|....|..
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~ 50 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICK 50 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEE
Confidence 3568999999999999999999999999999876643
No 69
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=1.5e-06 Score=66.92 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=33.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
....+|||+|||+++|+++|+++|++||.|....|..
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~ 49 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY 49 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEE
Confidence 3578999999999999999999999999999877643
No 70
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.20 E-value=7.5e-07 Score=66.04 Aligned_cols=33 Identities=33% Similarity=0.475 Sum_probs=30.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 297 HSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 297 ~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
++|||+|||+++|+++|+++|++||.|....|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~ 33 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVM 33 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe
Confidence 479999999999999999999999999877664
No 71
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.20 E-value=9.7e-07 Score=69.32 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=32.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
...++|||+|||+++|+++|+++|++||.|....|..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 43 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIIT 43 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEE
Confidence 3568999999999999999999999999998877643
No 72
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=9e-07 Score=69.20 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=32.3
Q ss_pred CcceEEEeCCCCCCCHHHHH----HHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLK----LIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~----~~F~~fG~v~~~~i~ 329 (334)
++++|||+|||+++++++|+ ++|++||.|....|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~ 46 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELS 46 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEE
Confidence 57899999999999999999 999999999987764
No 73
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.20 E-value=1.2e-06 Score=68.36 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=31.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
+..+|||+|||+++|+++|+++|++||.|....|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 41 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYP 41 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEE
Confidence 57899999999999999999999999999876653
No 74
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=1.5e-06 Score=68.39 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=32.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 48 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMP 48 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 356899999999999999999999999999887664
No 75
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.19 E-value=8e-07 Score=68.58 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=29.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCC--ceeeceEEe
Q 037095 297 HSIFVGNLPDSATVDQLKLIFEQFG--PVKPDGIQV 330 (334)
Q Consensus 297 ~~iyV~nLp~~~t~~~l~~~F~~fG--~v~~~~i~v 330 (334)
++|||+|||+++|+++|+++|++|| .|....|..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~ 37 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFE 37 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEe
Confidence 5799999999999999999999999 888777654
No 76
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.19 E-value=2e-06 Score=69.03 Aligned_cols=37 Identities=32% Similarity=0.474 Sum_probs=33.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
...++|||+|||+++|+++|+++|++||.|....|..
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 60 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM 60 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 4578999999999999999999999999999877753
No 77
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=1.5e-06 Score=69.63 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=32.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
.+..+|||+|||+++|+++|+++|++||.|....|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 58 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRII 58 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEE
Confidence 356899999999999999999999999999987764
No 78
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.19 E-value=7.9e-07 Score=70.51 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=32.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
.+.+||||||++.+|+++|+++|.+||+|+...+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~ 40 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY 40 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc
Confidence 35789999999999999999999999999998874
No 79
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=1.9e-06 Score=68.91 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=33.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
....+|||+|||+++|+++|+++|++||.|....|..
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~ 49 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILE 49 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 3578999999999999999999999999999877653
No 80
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.18 E-value=9.6e-07 Score=71.25 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=30.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
..++|||+|||+++|+++|+++|++||.|....|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 42 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL 42 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 4679999999999999999999999999987654
No 81
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=1.7e-06 Score=67.19 Aligned_cols=32 Identities=34% Similarity=0.512 Sum_probs=29.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeec
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPD 326 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~ 326 (334)
...+|||+|||+++|+++|+++|++||.|...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v 38 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV 38 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE
Confidence 45799999999999999999999999999963
No 82
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.18 E-value=1.7e-06 Score=67.66 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=29.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceee
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKP 325 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~ 325 (334)
..++|||+|||+++|+++|+++|++||.|..
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 42 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKT 42 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEee
Confidence 4689999999999999999999999999998
No 83
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=1.7e-06 Score=68.89 Aligned_cols=35 Identities=23% Similarity=0.562 Sum_probs=32.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
....+|||+|||+++|+++|+++|++||.|....|
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i 54 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL 54 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 35689999999999999999999999999998766
No 84
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.17 E-value=6.7e-07 Score=73.06 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=31.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCC-ceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFG-PVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG-~v~~~~i~ 329 (334)
.+++|||+||||++|+++|+++|++|| .|....|.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~ 62 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVN 62 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEE
Confidence 468999999999999999999999999 89887664
No 85
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.17 E-value=9.7e-07 Score=65.34 Aligned_cols=32 Identities=44% Similarity=0.666 Sum_probs=29.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 298 SIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 298 ~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
+|||+|||+++|+++|+++|++||.|....|.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 32 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLM 32 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 59999999999999999999999999877654
No 86
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=1.4e-06 Score=67.43 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=31.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeec-eEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPD-GIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~-~i~ 329 (334)
.+.+|||+|||+++|+++|+++|++||.|... .|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~ 39 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIM 39 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE
Confidence 46899999999999999999999999999887 653
No 87
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=1.4e-06 Score=68.48 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=32.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
.+..+|||+|||+++|+++|+++|++||.|....|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~ 48 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA 48 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEe
Confidence 457899999999999999999999999999987764
No 88
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=1.6e-06 Score=67.63 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=31.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCcee-eceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVK-PDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~-~~~i~ 329 (334)
...+|||+|||+++|+++|+++|++||.|. ...|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~ 43 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKII 43 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEe
Confidence 578999999999999999999999999998 76664
No 89
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.16 E-value=1.6e-06 Score=68.36 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=31.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
...+|||+|||+++|+++|+++|++||.|....|
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~ 43 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK 43 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 4679999999999999999999999999998665
No 90
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.15 E-value=1.7e-06 Score=67.98 Aligned_cols=34 Identities=29% Similarity=0.536 Sum_probs=31.4
Q ss_pred CcceEEEeCCCC-CCCHHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPD-SATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~-~~t~~~l~~~F~~fG~v~~~~i 328 (334)
.+.+|||+|||+ ++++++|+++|++||.|....|
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i 55 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI 55 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE
Confidence 568999999999 9999999999999999998665
No 91
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=1.7e-06 Score=67.84 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=31.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
...+|||+|||+++|+++|+++|++||.|....|.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~ 45 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIP 45 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEE
Confidence 56899999999999999999999999999886653
No 92
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=1.6e-06 Score=68.43 Aligned_cols=35 Identities=23% Similarity=0.466 Sum_probs=32.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
++.+|||+|||+++|+++|+++|++||.|....|.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~ 56 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLN 56 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEE
Confidence 56899999999999999999999999999987764
No 93
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=2.2e-06 Score=66.17 Aligned_cols=35 Identities=31% Similarity=0.460 Sum_probs=32.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
...+|||+|||+++|+++|+++|++||.|....|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~ 38 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLM 38 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEe
Confidence 46799999999999999999999999999987664
No 94
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.15 E-value=1.2e-06 Score=66.08 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=30.5
Q ss_pred cceEEEeCCCCCC------CHHHHHHHhhcCCceeeceEE
Q 037095 296 GHSIFVGNLPDSA------TVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 296 ~~~iyV~nLp~~~------t~~~l~~~F~~fG~v~~~~i~ 329 (334)
+.+|||+|||+++ |+++|+++|++||.|....|.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~ 40 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP 40 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec
Confidence 3689999999999 789999999999999987654
No 95
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.15 E-value=1.7e-06 Score=72.92 Aligned_cols=38 Identities=32% Similarity=0.291 Sum_probs=33.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEeee
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQVRS 332 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~vRs 332 (334)
....|||+||+|.+|+++|+++|++||.|....|.-|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~ 64 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN 64 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC
Confidence 35789999999999999999999999999998776544
No 96
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=2e-06 Score=70.34 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=32.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
+.++|||+||||++|+++|+++|++||.|....+..
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~ 59 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIA 59 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 568999999999999999999999999998755544
No 97
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=2.4e-06 Score=67.15 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=33.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhc-CCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQ-FGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~-fG~v~~~~i~v 330 (334)
...++|||+|||+++|+++|+++|++ ||.|....|..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~ 44 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVL 44 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEE
Confidence 35689999999999999999999999 99998877643
No 98
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.13 E-value=2.2e-06 Score=66.64 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=32.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEee
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQVR 331 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~vR 331 (334)
..++|||+|||+++|+++|+++|++||.|....+..+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~ 50 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY 50 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEE
Confidence 4578999999999999999999999999987766543
No 99
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=1.6e-06 Score=72.02 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=28.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCcee
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVK 324 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~ 324 (334)
.+.++|||+||||++|+++|+++|++||.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~ 51 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPIT 51 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCcc
Confidence 3578999999999999999999999999873
No 100
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.13 E-value=7.6e-06 Score=67.65 Aligned_cols=36 Identities=25% Similarity=0.504 Sum_probs=33.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~ 75 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIV 75 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 457899999999999999999999999999987765
No 101
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=2.5e-06 Score=65.72 Aligned_cols=35 Identities=34% Similarity=0.488 Sum_probs=32.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
...+|||+|||+++++++|+++|++||.|....|.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~ 49 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIM 49 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 56899999999999999999999999999987664
No 102
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.13 E-value=2.2e-06 Score=69.66 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=32.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~ 40 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLI 40 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 357899999999999999999999999999886664
No 103
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=2e-06 Score=67.37 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=32.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
+..+|||+|||+++|+++|+++|++||.|....|.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~ 45 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVV 45 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 56899999999999999999999999999887664
No 104
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.13 E-value=1.2e-06 Score=69.84 Aligned_cols=35 Identities=17% Similarity=0.062 Sum_probs=30.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCc---eeeceE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGP---VKPDGI 328 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~---v~~~~i 328 (334)
.++++|||+||||++|+++|+++|++||. |....|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i 46 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF 46 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEE
Confidence 46789999999999999999999999998 665554
No 105
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.13 E-value=8.6e-07 Score=70.03 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=32.9
Q ss_pred CCcceEEEeCCCC------CCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPD------SATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~------~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
..+.+|||+|||+ ++++++|+++|++||.|....|..
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~ 46 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPI 46 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCE
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEE
Confidence 3467899999999 999999999999999999877643
No 106
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.13 E-value=2.3e-06 Score=67.59 Aligned_cols=35 Identities=23% Similarity=0.495 Sum_probs=32.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
.+.+|||+|||+++|+++|+++|++||.|....|.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 62 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVH 62 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 56899999999999999999999999999877765
No 107
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.12 E-value=2.4e-06 Score=68.33 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=33.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
.+.++|||+|||+++|+++|+++|++||.|....|..
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~ 59 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 59 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE
Confidence 4578999999999999999999999999999877653
No 108
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.12 E-value=2e-06 Score=66.88 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=31.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 296 GHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 296 ~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
..+|||+|||+++++++|+++|++||.|....|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~ 35 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMM 35 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 4689999999999999999999999999987664
No 109
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.12 E-value=3.2e-06 Score=66.05 Aligned_cols=35 Identities=31% Similarity=0.613 Sum_probs=31.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
...+|||+|||+++|+++|+++|++||.|....|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~ 48 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH 48 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe
Confidence 56799999999999999999999999999876553
No 110
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=3e-06 Score=66.06 Aligned_cols=33 Identities=33% Similarity=0.574 Sum_probs=29.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
...+|||+|||+++|+++|+++|++||.|. ..|
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~ 50 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRL 50 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEE
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEE
Confidence 467999999999999999999999999996 443
No 111
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.12 E-value=1.3e-06 Score=69.98 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=32.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEee
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQVR 331 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~vR 331 (334)
...+|||+|||+++|+++|+++|++||.|....+.++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~ 60 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFR 60 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEE
Confidence 5689999999999999999999999999976655554
No 112
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.12 E-value=2.4e-06 Score=68.44 Aligned_cols=35 Identities=23% Similarity=0.544 Sum_probs=32.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
.+.+|||+|||+++|+++|+++|++||.|....|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~ 41 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG 41 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe
Confidence 46799999999999999999999999999987664
No 113
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.11 E-value=2.4e-06 Score=67.96 Aligned_cols=36 Identities=22% Similarity=0.455 Sum_probs=32.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
.++.+|||+|||+++|+++|+++|++||.|....|.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 59 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLN 59 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 457899999999999999999999999999877663
No 114
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.11 E-value=2.3e-06 Score=66.59 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=31.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
...+|||+|||+++|+++|+++|++||.|....|
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~ 49 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH 49 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 4579999999999999999999999999987654
No 115
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.11 E-value=2e-06 Score=69.33 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=30.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCce-eeceE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPV-KPDGI 328 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v-~~~~i 328 (334)
.+..+|||+|||+++|+++|+++|++||.| ....|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i 48 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHV 48 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEE
Confidence 356899999999999999999999999999 55544
No 116
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.11 E-value=1e-06 Score=65.15 Aligned_cols=32 Identities=28% Similarity=0.542 Sum_probs=29.3
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 298 SIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 298 ~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
+|||+|||+++|+++|+++|++||.|....|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~ 32 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELP 32 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 59999999999999999999999999876654
No 117
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.11 E-value=1.2e-06 Score=70.45 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=33.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
....+|||+|||+++|+++|+++|++||.|....|..
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 61 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMR 61 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE
Confidence 3568999999999999999999999999998877643
No 118
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.11 E-value=2.7e-06 Score=67.83 Aligned_cols=34 Identities=24% Similarity=0.515 Sum_probs=31.2
Q ss_pred CcceEEEeCCCCC-CCHHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDS-ATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~-~t~~~l~~~F~~fG~v~~~~i 328 (334)
...+|||+|||++ +|+++|+++|++||.|....|
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i 60 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV 60 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE
Confidence 4689999999999 999999999999999987665
No 119
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.10 E-value=1.2e-06 Score=71.00 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=30.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
.+++|||+|||+++|+++|+++|++||.|....|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i 48 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV 48 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 4689999999999999999999999999998766
No 120
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.10 E-value=2.7e-06 Score=69.28 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=31.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCc---eeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGP---VKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~---v~~~~i~ 329 (334)
.+.++|||+||||++|+++|+++|++||. |....|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~ 53 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFI 53 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEE
Confidence 35789999999999999999999999999 6766654
No 121
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=1.8e-06 Score=69.64 Aligned_cols=30 Identities=33% Similarity=0.730 Sum_probs=28.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCcee
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVK 324 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~ 324 (334)
...+|||+|||+++|+++|+++|++||.|.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~ 36 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV 36 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE
Confidence 468999999999999999999999999998
No 122
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.09 E-value=2.4e-06 Score=68.25 Aligned_cols=33 Identities=39% Similarity=0.548 Sum_probs=30.2
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhcCCceee
Q 037095 293 AAKGHSIFVGNLPDSATVDQLKLIFEQFGPVKP 325 (334)
Q Consensus 293 e~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~ 325 (334)
+....+|||+|||+++|+++|+++|++||.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 44 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKM 44 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCB
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeE
Confidence 346789999999999999999999999999984
No 123
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.09 E-value=1.5e-06 Score=68.23 Aligned_cols=35 Identities=46% Similarity=0.638 Sum_probs=32.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
...+|||+|||+++++++|+++|++||.|....|.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~ 41 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLV 41 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEE
Confidence 46899999999999999999999999999887764
No 124
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.09 E-value=2.2e-06 Score=66.09 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=31.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
..++|||+|||+++|+++|+++|++||.|....|..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~ 49 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK 49 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 357999999999999999999999999998776654
No 125
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.09 E-value=1.8e-06 Score=67.66 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=30.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 297 HSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 297 ~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
++|||+|||+++|+++|+++|++||.|....|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~ 33 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIA 33 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe
Confidence 489999999999999999999999999876654
No 126
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.09 E-value=2.9e-06 Score=69.04 Aligned_cols=36 Identities=22% Similarity=0.454 Sum_probs=32.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
.++.+|||+|||+++|+++|+++|++||.|....|.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 55 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLN 55 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 357899999999999999999999999999877664
No 127
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.08 E-value=2.6e-06 Score=73.20 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=30.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCC--ceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFG--PVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG--~v~~~~i~ 329 (334)
+..+|||||||+++|+++|+++|++|| .|....|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~ 90 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFA 90 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEE
Confidence 568999999999999999999999999 88877764
No 128
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.08 E-value=2.8e-06 Score=67.55 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=31.8
Q ss_pred CcceEEEeCCCCCC------CHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSA------TVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~------t~~~l~~~F~~fG~v~~~~i~ 329 (334)
.+.+|||+|||+++ |+++|+++|++||.|....|.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~ 54 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP 54 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee
Confidence 46799999999999 789999999999999987765
No 129
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.07 E-value=2.8e-06 Score=67.62 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=32.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
...++|||+|||+++|+++|+++|++||.|....|.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~ 58 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF 58 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe
Confidence 457899999999999999999999999999987654
No 130
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.06 E-value=3.3e-06 Score=66.08 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=28.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCcee
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVK 324 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~ 324 (334)
....+|||+|||+++|+++|+++|++||.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~ 43 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK 43 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE
Confidence 4578999999999999999999999999984
No 131
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.05 E-value=8.8e-07 Score=69.43 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=29.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceee
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKP 325 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~ 325 (334)
..++|||+|||+++|+++|+++|++||.|..
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~ 46 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND 46 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce
Confidence 4689999999999999999999999999887
No 132
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.05 E-value=6.4e-06 Score=64.31 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=30.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcC--CceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQF--GPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~f--G~v~~~~i 328 (334)
...+|||+|||+++|+++|+++|++| |.|....+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~ 49 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK 49 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 46799999999999999999999999 88886554
No 133
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.05 E-value=2.9e-06 Score=65.46 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=29.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCc-eeece
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGP-VKPDG 327 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~-v~~~~ 327 (334)
..++|||+|||+++|+++|+++|++||. |....
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~ 40 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQV 40 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEE
Confidence 4679999999999999999999999999 55443
No 134
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.05 E-value=3.9e-06 Score=66.15 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=30.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
..++|||+|||+++|+++|+++|++|| |....|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~ 47 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLP 47 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEe
Confidence 468999999999999999999999999 9877664
No 135
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.04 E-value=3.7e-06 Score=70.19 Aligned_cols=35 Identities=23% Similarity=0.061 Sum_probs=31.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 296 GHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 296 ~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
...|||+||+|.+|+++|+++|++||.|+...|.-
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~ 59 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK 59 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 45789999999999999999999999999988743
No 136
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.04 E-value=2.2e-06 Score=69.64 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=33.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
.+..+|||+|||+++|+++|+++|++||.|....|..
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 70 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILC 70 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 3578999999999999999999999999999877654
No 137
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.04 E-value=3.6e-06 Score=68.51 Aligned_cols=37 Identities=22% Similarity=0.461 Sum_probs=33.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
..+++|||+|||+++++++|+++|++||.|....|..
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~ 69 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY 69 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE
Confidence 3578999999999999999999999999998877643
No 138
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.04 E-value=3.2e-06 Score=71.37 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=31.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCc---eeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGP---VKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~---v~~~~i~ 329 (334)
.++++|||+||||++|+++|+++|++||. |....|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~ 80 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFI 80 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEE
Confidence 35789999999999999999999999999 6666654
No 139
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.03 E-value=3e-06 Score=67.43 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=28.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
..++|||+||||++|+++|+++|++||.+ ...|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i 46 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHI 46 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEE
Confidence 56899999999999999999999999954 4444
No 140
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.03 E-value=7.6e-06 Score=67.28 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=32.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~ 96 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIP 96 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEe
Confidence 357899999999999999999999999999986653
No 141
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.03 E-value=3.9e-06 Score=64.99 Aligned_cols=34 Identities=32% Similarity=0.598 Sum_probs=31.0
Q ss_pred CcceEEEeCCCCCCCHHHHH----HHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLK----LIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~----~~F~~fG~v~~~~i 328 (334)
.+.+|||+|||+++++++|+ ++|++||.|....|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i 44 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILV 44 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEE
Confidence 56899999999999999999 99999999987654
No 142
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.00 E-value=3.6e-06 Score=70.81 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=33.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
....+|||+|||+++|+++|+++|++||.|....|..
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~ 107 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVAR 107 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEee
Confidence 3568999999999999999999999999999877643
No 143
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=3.1e-06 Score=67.08 Aligned_cols=35 Identities=11% Similarity=0.193 Sum_probs=31.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCc-eeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGP-VKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~-v~~~~i~ 329 (334)
+.++|||+|||+++|+++|+++|++||. |....|.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~ 42 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVY 42 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEE
Confidence 4679999999999999999999999998 9887664
No 144
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.00 E-value=1.8e-06 Score=67.94 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=30.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
..++|||+|||+++|+++|+++|++|| |....|.
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~ 51 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLP 51 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEE
Confidence 578999999999999999999999999 9887764
No 145
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.00 E-value=3.6e-06 Score=73.70 Aligned_cols=37 Identities=32% Similarity=0.291 Sum_probs=33.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEee
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQVR 331 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~vR 331 (334)
...+|||+||+|++|+++|+++|++||.|+...|.-|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k 81 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK 81 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC
Confidence 3578999999999999999999999999999887544
No 146
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.99 E-value=7.3e-06 Score=64.42 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=30.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
..++|||+|||+++|+++|+++|++|| |....|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~ 47 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLV 47 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEe
Confidence 568999999999999999999999998 8887664
No 147
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.98 E-value=5e-06 Score=68.97 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=32.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~ 79 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIV 79 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 357899999999999999999999999999987764
No 148
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.98 E-value=1.4e-06 Score=66.73 Aligned_cols=33 Identities=45% Similarity=0.599 Sum_probs=30.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 297 HSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 297 ~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
.+|||+|||+++++++|+++|++||.|....|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~ 34 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLI 34 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 579999999999999999999999999887664
No 149
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.96 E-value=8.5e-06 Score=68.90 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=32.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
...+|||+|||+++|+++|+++|++||.|....|..
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 73 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGL 73 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 568999999999999999999999999999877643
No 150
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.95 E-value=9.8e-06 Score=62.14 Aligned_cols=36 Identities=11% Similarity=0.060 Sum_probs=31.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
....+|||+|||+++|+++|+++|++| .|....|..
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~ 43 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVR 43 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEE
Confidence 357899999999999999999999999 888776643
No 151
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.94 E-value=6e-06 Score=69.64 Aligned_cols=35 Identities=31% Similarity=0.375 Sum_probs=32.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
...+|||+|||+++|+++|+++|++||.|....|.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~ 103 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIP 103 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe
Confidence 46899999999999999999999999999887764
No 152
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.94 E-value=4.7e-06 Score=64.49 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=29.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeec
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPD 326 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~ 326 (334)
....+|||+|||+++|+++|+++|++||.|+..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~ 46 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV 46 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe
Confidence 357899999999999999999999999998644
No 153
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.94 E-value=2.9e-06 Score=68.06 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=31.7
Q ss_pred CcceEEEeCCCCCCCHHHHH---HHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLK---LIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~---~~F~~fG~v~~~~i 328 (334)
...+|||+|||+++++++|+ ++|++||.|....|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i 50 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVI 50 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEE
Confidence 45799999999999999999 99999999998877
No 154
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.94 E-value=4.6e-06 Score=69.65 Aligned_cols=36 Identities=31% Similarity=0.364 Sum_probs=32.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~ 80 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIP 80 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 357899999999999999999999999999877664
No 155
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.93 E-value=7.4e-06 Score=74.54 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=31.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCC--ceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFG--PVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG--~v~~~~i~v 330 (334)
..++|||+|||+++|+++|+++|++|| .|+...|..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~ 104 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFE 104 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEe
Confidence 578999999999999999999999999 899887754
No 156
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.91 E-value=7.8e-06 Score=70.07 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=32.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
.+.+|||+|||+++|+++|+++|++||.|....|..
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~ 106 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNL 106 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEe
Confidence 468999999999999999999999999999877653
No 157
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.90 E-value=4.8e-06 Score=70.62 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=28.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
....+|||+||||++|+++|+++|++|| |....|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i 77 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI 77 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE
Confidence 3568999999999999999999999999 654444
No 158
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.89 E-value=7.8e-06 Score=62.65 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=30.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
..++|||+|||+++++++|+++|++| .|....|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i 36 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV 36 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE
Confidence 35789999999999999999999999 9988777
No 159
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.87 E-value=6.1e-06 Score=66.97 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=30.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
++++|||+||||++|+++|+++|++| .|....|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~ 48 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLL 48 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEE
Confidence 46899999999999999999999999 78766654
No 160
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.87 E-value=1.6e-05 Score=66.44 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=26.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCcee
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVK 324 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~ 324 (334)
...+|||+||||++|+++|+++|++| .|.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~ 69 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIV 69 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-Cce
Confidence 56789999999999999999999999 565
No 161
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.86 E-value=7.4e-06 Score=68.28 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=29.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeec
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPD 326 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~ 326 (334)
..++|||+|||+++|+++|+++|++||.|...
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~ 75 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSE 75 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccc
Confidence 46799999999999999999999999999875
No 162
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.85 E-value=9.5e-06 Score=61.37 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=29.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcC----C-------ceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQF----G-------PVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~f----G-------~v~~~~i 328 (334)
...+|||+|||+++|+++|+++|++| | .|....|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~ 49 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI 49 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe
Confidence 46799999999999999999999999 8 7776544
No 163
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.85 E-value=1.2e-05 Score=66.91 Aligned_cols=34 Identities=9% Similarity=0.196 Sum_probs=29.4
Q ss_pred CcceEEEeCCCCCCCHHHHH----HHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLK----LIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~----~~F~~fG~v~~~~i 328 (334)
.+.+|||||||+++++++|+ ++|++||.|....|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i 65 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV 65 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEe
Confidence 46799999999999999976 69999999987543
No 164
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.06 E-value=2.2e-06 Score=69.01 Aligned_cols=33 Identities=27% Similarity=0.524 Sum_probs=30.4
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhcCCceee
Q 037095 293 AAKGHSIFVGNLPDSATVDQLKLIFEQFGPVKP 325 (334)
Q Consensus 293 e~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~ 325 (334)
+.+..+|||+|||+++|+++|+++|++||.|..
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 36 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKT 36 (116)
Confidence 345789999999999999999999999999987
No 165
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=7.4e-06 Score=67.52 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=29.9
Q ss_pred CcceEEE--eCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFV--GNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV--~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
...+||| |||+|++|+++|+++|++||.|....|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i 59 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM 59 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 3578999 669999999999999999999987543
No 166
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.77 E-value=1.5e-05 Score=69.77 Aligned_cols=35 Identities=23% Similarity=0.498 Sum_probs=32.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
.+++|||+|||+++++++|+++|++||.|....|.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~ 121 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVD 121 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 57899999999999999999999999999877664
No 167
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.76 E-value=1.7e-05 Score=69.16 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=32.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~ 61 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMS 61 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEe
Confidence 357899999999999999999999999999987764
No 168
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.75 E-value=2e-05 Score=69.80 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=32.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
...+|||+|||+++|+++|+++|++||.|...+|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 46899999999999999999999999999987764
No 169
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.72 E-value=2.7e-05 Score=65.25 Aligned_cols=35 Identities=20% Similarity=0.571 Sum_probs=32.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
...+|||+|||+++|+++|+++|++||.|....|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~ 128 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRIL 128 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEE
Confidence 46789999999999999999999999999987774
No 170
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.70 E-value=3.2e-05 Score=66.32 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=32.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
...+|||+|||+++|+++|+++|++||.|....|.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~ 137 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIM 137 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe
Confidence 34799999999999999999999999999987775
No 171
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.70 E-value=0.00011 Score=67.17 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=32.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
....+|||+|||+++|+++|+++|++||.|....|.
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 457899999999999999999999999999988765
No 172
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.65 E-value=5.5e-05 Score=62.65 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=32.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
...+|||+|||+++|+++|+++|++||.|....|..
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~ 121 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW 121 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEE
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEe
Confidence 467999999999999999999999999999877653
No 173
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.63 E-value=4.3e-05 Score=67.69 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=32.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 296 GHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 296 ~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
..+|||+|||+++|+++|+++|++||.|....|..
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~ 137 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 137 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeec
Confidence 46899999999999999999999999999888753
No 174
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.61 E-value=4.7e-05 Score=63.88 Aligned_cols=35 Identities=34% Similarity=0.679 Sum_probs=32.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 296 GHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 296 ~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
..+|||+|||+++|+++|+++|++||.|....|..
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~ 128 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVK 128 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEe
Confidence 67999999999999999999999999998877643
No 175
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.60 E-value=7.3e-05 Score=58.06 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=29.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
...+|||+|| ++|+++|+++|++||.|....|
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i 45 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM 45 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe
Confidence 5689999995 9999999999999999988776
No 176
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.60 E-value=3.9e-05 Score=68.73 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=31.8
Q ss_pred CcceEEEeCCCC-CCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPD-SATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~-~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
.+.+|||+|||+ ++|+++|+++|++||.|....|.
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~ 68 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL 68 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEE
Confidence 568999999999 99999999999999999876654
No 177
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.58 E-value=4.9e-05 Score=59.29 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=27.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCcee
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVK 324 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~ 324 (334)
...+|||+|||+++|+++|+++|++|+.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~ 43 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSVRAR 43 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCSEEE
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCeEEE
Confidence 568999999999999999999999997654
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.58 E-value=2.9e-05 Score=64.83 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=31.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 296 GHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 296 ~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
..+|||+|||+++|+++|+++|++||.|....|..
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~ 121 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLML 121 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEE
Confidence 56899999999999999999999999998877643
No 179
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.57 E-value=6.3e-05 Score=65.44 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=32.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
...+|||+|||+++|+++|+++|++||.|....|..
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~ 159 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLAR 159 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEE
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEe
Confidence 467999999999999999999999999999887753
No 180
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.57 E-value=3e-05 Score=69.14 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=27.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCcee
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVK 324 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~ 324 (334)
.+.+|||+|||+++|+++|+++|++||.|.
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~ 151 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKR 151 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcc
Confidence 357899999999999999999999999993
No 181
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.57 E-value=4e-05 Score=70.07 Aligned_cols=34 Identities=35% Similarity=0.598 Sum_probs=31.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
..++|||+|||+++|+++|+++|++||.|....|
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i 54 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI 54 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 5689999999999999999999999999987655
No 182
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=97.56 E-value=0.00052 Score=57.25 Aligned_cols=110 Identities=13% Similarity=0.103 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcC---CCccceEEEEEEEEEEeCCC
Q 037095 15 VVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL---DYQNYNVQIFSADAQASYDN 90 (334)
Q Consensus 15 ~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL---~~~~~~~~I~tvD~Q~s~~g 90 (334)
.--.+++..|+..++ .+.+.|..+|.++..+...|. ...|.++|.+.+..+ .+.+..+.+...+.....++
T Consensus 19 ~~i~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~~~g~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 93 (143)
T 4i4k_A 19 AAVAALPARIVAAWADHDADRFADVFAEDGTMILPGL-----FRKGRENIRTHMAAAFAGPYKGTRVIGSPIDARLLGDG 93 (143)
T ss_dssp HHHHTHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhhcCceEEeCCC-----eecCHHHHHHHHHHHHhhcCCCCeEEeeeEEEEEcCCC
Confidence 345678999999999 577899999999998876653 678999999988753 23444555555555544444
Q ss_pred CEEEEEEEEEEeCCC----CcceeEEEEEEEEeCCeEEEEccE
Q 037095 91 GLTVLVTGCLIGKDN----VRRKFTQSFFLAPQDKGYFVLNDI 129 (334)
Q Consensus 91 gvlI~VtG~v~~~d~----~~r~FsQtF~Lap~~~~Y~V~NDi 129 (334)
..++...|.+...+. ..+.+.+|+++...+++|.|...-
T Consensus 94 ~A~v~~~~~~~~~g~~~~~~~~~~~~T~v~~r~~g~WrI~~~h 136 (143)
T 4i4k_A 94 IALLITEGGILAPGETEASGDGAVRASWLAVEQDGQWRLAAYQ 136 (143)
T ss_dssp EEEEEEEEEEECTTCSSCCGGGEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeccceecCCCCCCCcccceEEEEEEEEECCcEEEEEec
Confidence 444445555554443 236788999999999999998753
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.56 E-value=3.9e-05 Score=70.55 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=31.6
Q ss_pred cCCcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 293 AAKGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 293 e~~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
+....+|||+|||+++|+++|+++|++||.|....|.-
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 75 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVAD 75 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 34678999999999999999999999999999877653
No 184
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.56 E-value=6.9e-05 Score=60.06 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=25.1
Q ss_pred eEEEeCCCCCCCHHH----HHHHhhcCC-ceeec
Q 037095 298 SIFVGNLPDSATVDQ----LKLIFEQFG-PVKPD 326 (334)
Q Consensus 298 ~iyV~nLp~~~t~~~----l~~~F~~fG-~v~~~ 326 (334)
.|||+|||+++++++ |+++|++|| .|.+.
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V 44 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI 44 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE
Confidence 499999999999998 558999995 88753
No 185
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.56 E-value=6.2e-05 Score=64.60 Aligned_cols=36 Identities=33% Similarity=0.661 Sum_probs=32.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
...+|||+|||+++|+++|+++|++||.|....|..
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~ 148 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVK 148 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEee
Confidence 468999999999999999999999999998877643
No 186
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.54 E-value=7.8e-05 Score=61.79 Aligned_cols=36 Identities=28% Similarity=0.599 Sum_probs=32.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
...+|||+|||+++|+++|+++|++||.|....|..
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~ 122 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILV 122 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEe
Confidence 457899999999999999999999999999877643
No 187
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.54 E-value=0.00011 Score=61.27 Aligned_cols=35 Identities=37% Similarity=0.652 Sum_probs=31.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
...+|||+|||+++|+++|+++|++||.|....|.
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~ 122 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNIL 122 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEE
Confidence 45799999999999999999999999999987664
No 188
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.52 E-value=6.4e-05 Score=74.75 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=32.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
...+|||+|||+++|+++|+++|++||.|....|..
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~ 136 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY 136 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeec
Confidence 467999999999999999999999999999887753
No 189
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.35 E-value=9.3e-05 Score=68.37 Aligned_cols=35 Identities=14% Similarity=0.463 Sum_probs=32.0
Q ss_pred CcceEEEeCCCCCC---------CHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDSA---------TVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~---------t~~~l~~~F~~fG~v~~~~i~ 329 (334)
...+||||||++++ ++++|+++|++||.|....|.
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~ 176 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV 176 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE
Confidence 56899999999998 799999999999999988764
No 190
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.32 E-value=0.00016 Score=64.65 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=32.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCC-ceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFG-PVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG-~v~~~~i~v 330 (334)
.+.+|||+|||+++|+++|+++|++|| .|....|.-
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 467999999999999999999999999 998877643
No 191
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.32 E-value=0.00014 Score=60.57 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=33.0
Q ss_pred CCcceEEEeCCCCC-CCHHHHHHHhhcCCceeeceEE
Q 037095 294 AKGHSIFVGNLPDS-ATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 294 ~~~~~iyV~nLp~~-~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
..|.-|||+||+++ ++.++|+++|++||.|+..-++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~ 52 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFV 52 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECC
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEe
Confidence 46899999999999 9999999999999999987663
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.32 E-value=0.00018 Score=65.61 Aligned_cols=36 Identities=33% Similarity=0.526 Sum_probs=32.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
.+.+|||+|||+++|+++|+++|++||.|....|..
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~ 130 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVV 130 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeee
Confidence 357999999999999999999999999999887754
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.31 E-value=0.00013 Score=61.60 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=29.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeec
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPD 326 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~ 326 (334)
...+|||+|||+++|+++|+++|++||.|+..
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV 129 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe
Confidence 46799999999999999999999999999754
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.29 E-value=0.00017 Score=62.26 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=31.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCC-ceeeceEE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFG-PVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG-~v~~~~i~ 329 (334)
.+.+|||+|||+++|+++|+++|++|| .|....|.
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~ 154 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 154 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE
Confidence 367999999999999999999999999 99877663
No 195
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.22 E-value=0.00025 Score=64.85 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=31.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEe
Q 037095 296 GHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 296 ~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
..+|||+|||+++|+++|+++|++||.|....|..
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~ 129 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVY 129 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEe
Confidence 46999999999999999999999999999887743
No 196
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=97.19 E-value=0.0025 Score=54.19 Aligned_cols=116 Identities=11% Similarity=-0.012 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHh-cCcchhcccccCCCceec-cCCCCcccccccHHHHHHHHhcC---CCccceEEEEEEEEEEeC
Q 037095 14 QVVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSR-PDQSGSMTSVTTIKEINDMIVSL---DYQNYNVQIFSADAQASY 88 (334)
Q Consensus 14 ~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~-~g~~g~~~~~~G~~~I~~~i~sL---~~~~~~~~I~tvD~Q~s~ 88 (334)
..--..++..|+..++ .+.+.+..+|.+++.+.. .|. .+.|.++|.+.+..+ .+....+.+...+.....
T Consensus 15 ~~aI~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~~~~g~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 89 (172)
T 3cu3_A 15 ESAIRAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGT-----HLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVN 89 (172)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCC-----EEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHhhcCCCeEEEeCCCC-----eEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEeC
Confidence 3445678999999998 578899999999998874 443 688999999988764 233334444433433333
Q ss_pred CCCEEEEEEEEEEeCCC----CcceeEEEEEEEEeCCeEEEEccEEEeec
Q 037095 89 DNGLTVLVTGCLIGKDN----VRRKFTQSFFLAPQDKGYFVLNDILRYVD 134 (334)
Q Consensus 89 ~ggvlI~VtG~v~~~d~----~~r~FsQtF~Lap~~~~Y~V~NDiFR~vd 134 (334)
++..++...+.+...+. ..+.+..+++|...+++|.|.......++
T Consensus 90 ~d~A~v~~~~~~~~~g~~~~~~~~~~~~t~v~~r~dG~WrI~~~~~s~~~ 139 (172)
T 3cu3_A 90 SQLALMLVVIRVILPGQTETSASRDSLPLYVVTKGDEGWQIEGLLNTRKL 139 (172)
T ss_dssp TTEEEEEEEEEEECTTCSSBCGGGCBCCEEEEEEETTEEEEEEEECCBCC
T ss_pred CCEEEEEEEEEEEeCCCCCcCCccceEEEEEEEEeCCeEEEEEEEcCccc
Confidence 34444555555665443 23556778888888999999988766554
No 197
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.19 E-value=0.00026 Score=57.92 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=28.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
.+.+|||+|| ++|+++|+++|++||.|....|
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i 69 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM 69 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE
Confidence 5789999995 7999999999999999988766
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.11 E-value=0.00025 Score=65.03 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=31.9
Q ss_pred CcceEEEeCCCCC-CCHHHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDS-ATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~-~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
.+.+|||+|||++ +|+++|+++|++||.|....|.
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~ 244 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIP 244 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECC
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEE
Confidence 5689999999999 9999999999999999986653
No 199
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=97.09 E-value=0.0071 Score=47.61 Aligned_cols=114 Identities=16% Similarity=0.097 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC-CccceEEEEEEEEEEeCC
Q 037095 12 SPQVVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD-YQNYNVQIFSADAQASYD 89 (334)
Q Consensus 12 ~a~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~-~~~~~~~I~tvD~Q~s~~ 89 (334)
+....-.+.+..|+..++ .+.+.|..+|.++..+..++. ..+.|.++|.+.+..+- .....+.+.........
T Consensus 3 ~~~~~I~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~v~~~g- 77 (129)
T 3hx8_A 3 SAKEAIEAANADFVKAYNSKDAAGVASKYMDDAAAFPPDM----ARVDGRQNIQKLWQGAMDMGISELKLTTLDVQESG- 77 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTS----CCEESHHHHHHHHHHHHHTTCEEEEEEEEEEEEET-
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCCCC----CcccCHHHHHHHHHHHHhCCCceEEEEEEEEEcCC-
Confidence 345566788999999999 577899999999998865432 15789999999887542 11135666666655333
Q ss_pred CCEEEEEEEEEEe----CCCCcc--eeEEEEEEEEe-CCeEEEEccEEEe
Q 037095 90 NGLTVLVTGCLIG----KDNVRR--KFTQSFFLAPQ-DKGYFVLNDILRY 132 (334)
Q Consensus 90 ggvlI~VtG~v~~----~d~~~r--~FsQtF~Lap~-~~~Y~V~NDiFR~ 132 (334)
+..+ +.|.+.. .++... ...-+.++... +++|.|..|+|.-
T Consensus 78 d~A~--~~~~~~~~~~~~~G~~~~~~g~~~~v~~r~~dG~W~i~~~~~~~ 125 (129)
T 3hx8_A 78 DFAF--ESGSFSLKAPGKDSKLVDAAGKYVVVWRKGQDGGWKLYRDIWNS 125 (129)
T ss_dssp TEEE--EEEEEEEEEECTTSCEEEEEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CEEE--EEEEEEEEeeCCCCCeeeeeEEEEEEEEECCCCcEEEEEeeccc
Confidence 3222 3333322 233222 23445666677 7899999998853
No 200
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=97.08 E-value=0.0098 Score=49.84 Aligned_cols=115 Identities=9% Similarity=0.071 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHh-cCcchhcccccCCCcee-ccCCCCcccccccHHHHHHHHhcC---CCccceEEEEEEEEEEeCCCC
Q 037095 17 GNAFVEQYYCILH-QNPDVVHRFYQESSMVS-RPDQSGSMTSVTTIKEINDMIVSL---DYQNYNVQIFSADAQASYDNG 91 (334)
Q Consensus 17 G~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~-~~g~~g~~~~~~G~~~I~~~i~sL---~~~~~~~~I~tvD~Q~s~~gg 91 (334)
-.+++..|...++ .+.+.|..+|.++..+. ..|. ...|.++|.+.+..+ .+....+.+...+.....++.
T Consensus 8 I~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~~~~G~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~ 82 (146)
T 3gzr_A 8 IQALIQAYFTAWNTNAPERFAEIFWPDGSWVNVVGM-----HWRGRDQIVFAHTAFLKTIFKDCKQELVTIEARTIAPGS 82 (146)
T ss_dssp HHHHHHHHHHHHHTTCGGGSGGGEEEEEEEECTTCC-----EEESHHHHHHHHHHHHHTTTTTCCEEEEEEEEEEEETTE
T ss_pred HHHHHHHHHHHHHcCCHHHHHhhccCCeEEEcCCCC-----eeeCHHHHHHHHHHHhhcccCCCEEEEeEEEEEEcCCCE
Confidence 3678999999998 57899999999999876 5664 688999999887643 233334444444444333444
Q ss_pred EEEEEEEEEE---eCCCC---cceeEEEEEEEEeCCeEEEEccEEEeecCC
Q 037095 92 LTVLVTGCLI---GKDNV---RRKFTQSFFLAPQDKGYFVLNDILRYVDEI 136 (334)
Q Consensus 92 vlI~VtG~v~---~~d~~---~r~FsQtF~Lap~~~~Y~V~NDiFR~vd~~ 136 (334)
.++.+...+. ..++. ...+.++++|...+++|.|..+.-..++..
T Consensus 83 A~v~~~~~l~g~~~~~G~~~~~~~~~~t~v~vr~dg~WrI~a~h~s~v~p~ 133 (146)
T 3gzr_A 83 ALAVVTLIQDAYVTPDGRQMPRAHDRLTLLAVEREGVWRFIHGHNTIVNPD 133 (146)
T ss_dssp EEEEEEEEECCEECTTCCEECCEEEEEEEEEEEETTEEEEEEEEEEECCTT
T ss_pred EEEEEEEEecceeCCCCCcCCccCcEEEEEEEEECCEEEEEEEecccCcCC
Confidence 4444443342 12322 246789999999999999999988877643
No 201
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.02 E-value=0.00056 Score=62.44 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=32.1
Q ss_pred CcceEEEeCCCCC-CCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPDS-ATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~~-~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
.+.+|||+|||++ +|+++|+++|++||.|....|..
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~ 219 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLAC 219 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEE
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEE
Confidence 5679999999999 59999999999999999887654
No 202
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=96.77 E-value=0.015 Score=46.18 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC--C-ccceEEEEEEEEEEeCC
Q 037095 14 QVVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD--Y-QNYNVQIFSADAQASYD 89 (334)
Q Consensus 14 ~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~--~-~~~~~~I~tvD~Q~s~~ 89 (334)
..--.+++..||..|+ .+.+.+..+|.++..+...+.. ...|.++|.+.+..+- + ..+.++|..+... .+
T Consensus 10 ~~~i~~~~~~~~~a~~~~D~~~~~~l~a~D~v~~~~~~~----~~~G~~ai~~~~~~~~~~~~~~~~~~~~~i~~~--~g 83 (135)
T 3d9r_A 10 LAVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRP----AAVGKDELAEVYLSVFETVGFDMAYEIKEVVQT--SA 83 (135)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTSC----CEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEE--ET
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCCC----cccCHHHHHHHHHHHHhhcCCceeEEEEEEEEe--cC
Confidence 3445788999999999 5678999999999988765531 4579999999888652 1 1223334433321 23
Q ss_pred CCEEEEE--EEEEEeC-CCCc--ceeEEEEEEEEe-CCeEEEEccEEEee
Q 037095 90 NGLTVLV--TGCLIGK-DNVR--RKFTQSFFLAPQ-DKGYFVLNDILRYV 133 (334)
Q Consensus 90 ggvlI~V--tG~v~~~-d~~~--r~FsQtF~Lap~-~~~Y~V~NDiFR~v 133 (334)
+..++.. .|.++.. ++.. ..+.-+++|... +++|.|..+.|..+
T Consensus 84 d~a~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~dG~W~i~~~~~s~~ 133 (135)
T 3d9r_A 84 DWAFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKI 133 (135)
T ss_dssp TEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred CEEEEEEEEEEEEecCCCCCceeecccEEEEEEecCCCcEEEEEEeeccc
Confidence 3333332 2333322 2322 235567788887 88999999999865
No 203
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=96.37 E-value=0.15 Score=42.15 Aligned_cols=118 Identities=12% Similarity=0.140 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC--CccceEEEEEEEEEEe
Q 037095 11 LSPQVVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD--YQNYNVQIFSADAQAS 87 (334)
Q Consensus 11 ~~a~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~--~~~~~~~I~tvD~Q~s 87 (334)
...+.--...+.+|+..|+ .+.+.|..+|.++..+..... | ....|.++|.+.+..+- +....+.+..+. -
T Consensus 16 ~~d~~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~~~~~-~--~~~~G~~~i~~~~~~~~~~~~~~~i~~~~i~--~- 89 (156)
T 3h51_A 16 DGEAREVAALFDTWNAALATGNPHKVADLYAPDGVLLPTVS-N--EVRASREQIENYFEMFLTKKPKGVINYRTVR--L- 89 (156)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEECSSC-S--SCBCSHHHHHHHHHHHGGGCCEEEEEEEEEE--E-
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCC-C--ccccCHHHHHHHHHHHHhhCCCCcccceEEE--E-
Confidence 3344555777888999988 678899999999987653211 1 15789999998887642 111233333332 2
Q ss_pred CCCCEEEEEEEEEEe----CCCC--cceeEEEEEEEEeCCeEEEEccEEEeecC
Q 037095 88 YDNGLTVLVTGCLIG----KDNV--RRKFTQSFFLAPQDKGYFVLNDILRYVDE 135 (334)
Q Consensus 88 ~~ggvlI~VtG~v~~----~d~~--~r~FsQtF~Lap~~~~Y~V~NDiFR~vd~ 135 (334)
.++. +.++.|.+.+ .++. ......++++...+++|.|..+.+..+..
T Consensus 90 ~~gd-~A~~~~~~~~~~~~~~G~~~~~~~r~t~v~~r~dG~WkIv~~H~S~~p~ 142 (156)
T 3h51_A 90 LDDD-SAVDAGVYTFTLTDKNGKKSDVQARYTFVYEKRDGKWLIINHHSSAMPE 142 (156)
T ss_dssp CSSS-EEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECSC
T ss_pred ecCC-eEEEEEEEEEEEEcCCCCeEEEEeEEEEEEEEECCEEEEEEEeecCCCc
Confidence 2222 3344555432 1232 23345677777888999999999887754
No 204
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16
Probab=96.22 E-value=0.14 Score=40.76 Aligned_cols=105 Identities=9% Similarity=-0.022 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHh-cCcchhcccc--cCCCceeccCCCCcccccccHHHHHHHHhc-CC--CccceEEEEEEEEEEeCCCC
Q 037095 18 NAFVEQYYCILH-QNPDVVHRFY--QESSMVSRPDQSGSMTSVTTIKEINDMIVS-LD--YQNYNVQIFSADAQASYDNG 91 (334)
Q Consensus 18 ~~FV~qYY~~L~-~~p~~L~~fY--~~~S~l~~~g~~g~~~~~~G~~~I~~~i~s-L~--~~~~~~~I~tvD~Q~s~~gg 91 (334)
.+-++.||..++ .+.+.+..+| .++..+...+. ...|.++|.+.+.. ++ +.....++...+.+...++
T Consensus 8 ~~~~~~~~~A~~~~D~~~~~~~y~~~~d~~~~~~~~-----~~~G~~~i~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~- 81 (122)
T 3b7c_A 8 VQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGK-----FRNGWDETLAAYKKNYPDKESLGELKFTIKEIKMLSNY- 81 (122)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSC-----EEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEEEETT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhcCCCCEEEECCCc-----cccCHHHHHHHHHHhcCChhhcCeeEEEEEEEEEcCCC-
Confidence 446777788777 6788999999 55555444432 57899999997664 22 2223455555565544223
Q ss_pred EEEEEEEEEEe--CCCCcceeEEEEEEEEeCCeEEEEccEE
Q 037095 92 LTVLVTGCLIG--KDNVRRKFTQSFFLAPQDKGYFVLNDIL 130 (334)
Q Consensus 92 vlI~VtG~v~~--~d~~~r~FsQtF~Lap~~~~Y~V~NDiF 130 (334)
+ .+|.|.+.+ .+... ...-|++|...+++|.|..+-.
T Consensus 82 ~-a~v~~~~~~~~~~~~~-~~r~T~v~~k~~g~W~Iv~~H~ 120 (122)
T 3b7c_A 82 A-AMVVGRWDLKRLKDTP-TGVFTLLVEKIDDRWVITMDHS 120 (122)
T ss_dssp E-EEEEEEEEEECSSCCC-EEEEEEEEEEETTEEEEEEEEE
T ss_pred E-EEEEEEEEEEccCCCC-CcEEEEEEEEeCCCEEEEEEec
Confidence 3 333444443 32222 2346888899999999988753
No 205
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=95.80 E-value=0.078 Score=44.24 Aligned_cols=110 Identities=9% Similarity=0.107 Sum_probs=71.0
Q ss_pred HHHHHHHHHHh-cCcchhcccccCCCc--eeccCCCCcccccccHHHHHHHHhcCCCccc-eEEEEEEEEEEeCC-CCEE
Q 037095 19 AFVEQYYCILH-QNPDVVHRFYQESSM--VSRPDQSGSMTSVTTIKEINDMIVSLDYQNY-NVQIFSADAQASYD-NGLT 93 (334)
Q Consensus 19 ~FV~qYY~~L~-~~p~~L~~fY~~~S~--l~~~g~~g~~~~~~G~~~I~~~i~sL~~~~~-~~~I~tvD~Q~s~~-ggvl 93 (334)
+-.+.||..|. .+.+.|..+|.++.. +..++. . ...|.++|.+.+..+ |... ...|...|.+-..+ +..+
T Consensus 12 ~~~~af~~A~~~gD~da~~al~a~d~~v~~v~p~g--~--~l~G~~ai~~~w~~~-f~~~~~~~i~~~~v~v~~~gd~A~ 86 (144)
T 3gwr_A 12 AAEDAFYAAFEARSLDDMMAVWARDDHVACIHPLA--A--PLNGRAAVAAGWRSM-FGAAGRFRLQVKAVHEIRQADHVI 86 (144)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHBCSSSCCEEECTTC--C--CEESHHHHHHHHHHH-HHHHCCEEEEEEEEEEEECSSEEE
T ss_pred HHHHHHHHHHHcCCHHHHHhhccCCCCEEEECCCC--C--CcccHHHHHHHHHHH-HcCCCcEEEEEEEEEEEecCCEEE
Confidence 34677888888 678999999998853 344543 1 578999999987654 1111 34444444443332 3344
Q ss_pred EEEEEEEEeCC--CCcceeEEEEEEEEeCCeEEEEccEEEee
Q 037095 94 VLVTGCLIGKD--NVRRKFTQSFFLAPQDKGYFVLNDILRYV 133 (334)
Q Consensus 94 I~VtG~v~~~d--~~~r~FsQtF~Lap~~~~Y~V~NDiFR~v 133 (334)
+.+...+...+ .....+.-|+++...+++|.|+..--...
T Consensus 87 v~~~e~~~~~~~~g~~~~~r~T~V~~r~~g~WrivhhH~S~~ 128 (144)
T 3gwr_A 87 RIVDEFLTIGDETAPRPAILATNVYRREADGWRMVLHHASPL 128 (144)
T ss_dssp EEEEEEEEETTCSSCCCCEEEEEEEEECSSSEEEEEEEEEEC
T ss_pred EEEEEEEEecCCCCceeeEEEEEEEEEECCEEEEEEEecCCC
Confidence 55555666532 22245777888888888999998877665
No 206
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=95.74 E-value=0.046 Score=44.63 Aligned_cols=106 Identities=10% Similarity=0.150 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHh-cCcchhcccccCCCceec-cCCCCcccccccHHHHHHHHhcCCC---ccceEEEEEEEEEEeCCCCE
Q 037095 18 NAFVEQYYCILH-QNPDVVHRFYQESSMVSR-PDQSGSMTSVTTIKEINDMIVSLDY---QNYNVQIFSADAQASYDNGL 92 (334)
Q Consensus 18 ~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~-~g~~g~~~~~~G~~~I~~~i~sL~~---~~~~~~I~tvD~Q~s~~ggv 92 (334)
.+.+..||..++ .+.+.|..+|.+++.+.. +|. ...|.++|.+.+..+-- ....+++..+...... +..
T Consensus 6 ~~l~~~~~~A~~~~D~d~~~~lfa~Dav~~~~~g~-----~~~G~~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~g-d~A 79 (142)
T 2gxf_A 6 KDIISACDLAIQNEDFDTLMNYYSEDAVLVVKPGM-----IARGKEEIKKAFITIANYFNHHIVPTQGKMILLEAG-DTV 79 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHTTSEEEEEEEECSSSC-----EEEHHHHHHHHHHHTTSCCCSSCCCEEEEEEEEEET-TEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCEEEEcCCCC-----cccCHHHHHHHHHHHHHhhCCCceEEEEEEEEEEcC-CEE
Confidence 467889999998 578899999999998854 443 68899999999886431 2234445555554433 333
Q ss_pred EEEEEEEEEe-CCCCc--ceeEEEEEEEEe-CCeEEEEccE
Q 037095 93 TVLVTGCLIG-KDNVR--RKFTQSFFLAPQ-DKGYFVLNDI 129 (334)
Q Consensus 93 lI~VtG~v~~-~d~~~--r~FsQtF~Lap~-~~~Y~V~NDi 129 (334)
++.....+.. .++.+ ....-++++..+ +++|.|.-|.
T Consensus 80 ~~~~~~~~~~~~~G~~~~~~g~~t~v~~r~~dG~Wri~~d~ 120 (142)
T 2gxf_A 80 LVLSQTLLDSDKKDSEYAMERRATYVFKKNAQGEWLCVIDN 120 (142)
T ss_dssp EEEEEEECCC---------EEEEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEEEEEECCCCCeEeeeEEEEEEEEECCCCCEEEEEEC
Confidence 3333333332 11222 223347777775 5678886664
No 207
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=95.71 E-value=0.0093 Score=47.57 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=29.5
Q ss_pred CcceEEEeCCCC-----CCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPD-----SATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~-----~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
.+..|+|+||.. +.++++|+++|++||.|....|..
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~ 47 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFE 47 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEec
Confidence 457899999973 348999999999999999988753
No 208
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=95.57 E-value=0.22 Score=40.19 Aligned_cols=114 Identities=8% Similarity=0.010 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcC-C--CccceEEEEEEEEEEeCCCCE
Q 037095 17 GNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL-D--YQNYNVQIFSADAQASYDNGL 92 (334)
Q Consensus 17 G~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL-~--~~~~~~~I~tvD~Q~s~~ggv 92 (334)
-.++.+.||..+. .+.+.+..+|.++..+...+..|. .+.|.++|...+..+ . ....++++.....+...+..+
T Consensus 15 I~~l~~~~~~A~~~~D~~~~~~l~a~d~~~~~~~~~g~--~~~G~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~gd~aa 92 (143)
T 2ux0_A 15 IIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGN--LVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHVIGEDAA 92 (143)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTC--EEEHHHHHHHHHHHTTTTCCSCEEEEEEEEEEEECSTTEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCcEEEeccCCCc--EEEcHHHHHHHHHhhhhcCCCceeEEEeCCEEEEecCcEE
Confidence 4567788888877 688999999999876654332222 568999999888764 2 223455666665665544433
Q ss_pred EEEEEEEEE--eCC-CC--cceeEEEEEEEEeCCeEEEEccEEEee
Q 037095 93 TVLVTGCLI--GKD-NV--RRKFTQSFFLAPQDKGYFVLNDILRYV 133 (334)
Q Consensus 93 lI~VtG~v~--~~d-~~--~r~FsQtF~Lap~~~~Y~V~NDiFR~v 133 (334)
++. .+.+. .++ +. ...+--|+++...+++|.|..+-....
T Consensus 93 v~~-~~~~~~~~~~~g~~~~~~~r~T~v~~k~~g~Wkivh~H~S~~ 137 (143)
T 2ux0_A 93 CIA-YIRLTQYIDGQGRPRTSQSEETRVWHRRDGKWLNVHYHCSGA 137 (143)
T ss_dssp EEE-EEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred EEE-EeEeeeeecCCCCeeeeeEEEEEEEEEECCEEEEEEEeeCCC
Confidence 332 22222 122 22 334567788888899999998877654
No 209
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.43 E-value=0.011 Score=46.95 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=27.7
Q ss_pred CcceEEEeCCCCCCC-----------HHHHHHHhhcCCceeeceE
Q 037095 295 KGHSIFVGNLPDSAT-----------VDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t-----------~~~l~~~F~~fG~v~~~~i 328 (334)
....|+|+||..... +++|+++|++||.|....|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i 58 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL 58 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE
Confidence 467899999954433 6899999999999998744
No 210
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=95.18 E-value=0.39 Score=38.64 Aligned_cols=114 Identities=6% Similarity=-0.071 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhc----CCCccceEEEEEEEEEEeC
Q 037095 14 QVVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVS----LDYQNYNVQIFSADAQASY 88 (334)
Q Consensus 14 ~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~s----L~~~~~~~~I~tvD~Q~s~ 88 (334)
++--.+++++||..++ .+.+.|..+|.++..+...+.. ....|.++|.+.+.. ++ ...++++..+..+...
T Consensus 7 ~~~I~~l~~~~~~A~~~~D~~~~~~l~a~D~v~~~~~~~---~~~~G~~air~~~~~~~~~~~-~~~~~~~~~~~v~~~g 82 (142)
T 3f7s_A 7 ESEIRQLIERWMQAVRDRDIPGIIAPYADDIVAFDAIQA---LQFKGKSAYTAHWEMCMGMCT-GPMVFELAQLTVHAAG 82 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECSSSS---SCEESHHHHHHHHHHHHHTCC-SCEEEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCCC---ccccCHHHHHHHHHHHHHhCC-CceEEEEeeeEEEEcC
Confidence 3445678899999987 5778999999998766443321 134699999887643 22 2356777776665443
Q ss_pred CCCEEEEEEEEEEeC--CCCcceeEEEEEEEEeCCeEEEEccEEEe
Q 037095 89 DNGLTVLVTGCLIGK--DNVRRKFTQSFFLAPQDKGYFVLNDILRY 132 (334)
Q Consensus 89 ~ggvlI~VtG~v~~~--d~~~r~FsQtF~Lap~~~~Y~V~NDiFR~ 132 (334)
+ ..++.....+... ++.....--|+++...+++|.|..+-..+
T Consensus 83 d-~A~~~~~~~~~~~~~~g~~~~~r~T~v~~r~~g~W~ivh~H~S~ 127 (142)
T 3f7s_A 83 D-LALAHWLNRCGPGDDESQCGFMRATVGYRRQGGQWQVIHEHWSA 127 (142)
T ss_dssp T-EEEEEEEEEEEESSCGGGCEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred C-EEEEEEEEEEeeecCCCcceeeEEEEEEEEeCCEEEEEEEeecc
Confidence 3 2222222233322 22333455678888889999999887765
No 211
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.07 E-value=0.038 Score=43.83 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=28.7
Q ss_pred cceEEEeCCC-------CCCCHHHHHHHhhcCCceeeceEE
Q 037095 296 GHSIFVGNLP-------DSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 296 ~~~iyV~nLp-------~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
..+|-|+... .++|+++|+++|++||.|....|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~ 50 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS 50 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc
Confidence 5678887766 468999999999999999998775
No 212
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=94.89 E-value=0.53 Score=37.59 Aligned_cols=111 Identities=12% Similarity=0.088 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHh-cCCCccceEEEEEEEEEEeCCCC
Q 037095 14 QVVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIV-SLDYQNYNVQIFSADAQASYDNG 91 (334)
Q Consensus 14 ~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~-sL~~~~~~~~I~tvD~Q~s~~gg 91 (334)
.+|-..| ..|...|+ .+.+.|..+|.++..+.+.+. |. ...|.++|.+ +. .++.......+..+......++.
T Consensus 14 ~ei~~~~-~~y~~A~~~~D~~~l~~lf~~d~~~~~~~~-~~--~~~G~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ 88 (129)
T 2rcd_A 14 ADVTAAF-YRYEKALTGNDVAVLDELFWHDEKTVRYGA-GE--NLYGIEEIRA-FRLARPSAGLDRALRNTVITTYGHDM 88 (129)
T ss_dssp HHHHHHH-HHHHHHHHTTCHHHHHHHBCCSTTCEEEET-TE--EEESHHHHHH-HHHHSCCTTCCCEEEEEEEEEBTTSE
T ss_pred HHHHHHH-HHHHHHHhcCCHHHHHHhccCCCCEEEECC-CC--ccCCHHHHHH-HHHhcCCCCCceEEEEEEEEEecCcE
Confidence 3444444 44556665 778899999999875543321 21 5679999999 55 44422234444444444433332
Q ss_pred EEEEEEEEEEeCCCCcceeEEEEEEEEeCCeEEEEccEEEe
Q 037095 92 LTVLVTGCLIGKDNVRRKFTQSFFLAPQDKGYFVLNDILRY 132 (334)
Q Consensus 92 vlI~VtG~v~~~d~~~r~FsQtF~Lap~~~~Y~V~NDiFR~ 132 (334)
.+ +...+...+. ...+.+|+++...+++|.|...-...
T Consensus 89 A~--~~~~~~~~~~-~~~g~~t~v~~r~~~gWrIv~~H~S~ 126 (129)
T 2rcd_A 89 AV--ASTEFTRTGS-TKIGRQMQTWVKMPEGWRIVAAHVSL 126 (129)
T ss_dssp EE--EEEEEECSSC-CSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EE--EEEEEEEcCC-CCceeEEEEEEECCCcEEEEEEecCC
Confidence 32 3344444322 23456788888899999999876553
No 213
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=94.62 E-value=0.31 Score=40.36 Aligned_cols=110 Identities=7% Similarity=-0.032 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCCCccc--eEEEEEEEEEEeC
Q 037095 12 SPQVVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNY--NVQIFSADAQASY 88 (334)
Q Consensus 12 ~a~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~~~~~--~~~I~tvD~Q~s~ 88 (334)
.-+...++.++.|+..++ .+.+.|..+|.++..+...|. ...|+++|...+...- ..+ .......+++...
T Consensus 14 ~de~aI~~l~~~~~~A~~~gD~~~l~al~a~D~v~~~~g~-----~~~Gr~ai~a~~~~~~-~~~~~~~~~~~~~i~v~G 87 (139)
T 3rob_A 14 ADELAIRTVQYRWLEATRKFDRQVLSSLMTDDVVFLTPGR-----LPFGKEEFLAACEQND-QRVIIEASATFEEIVIVE 87 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTS-----CCBCHHHHHHHHHHHH-HHEEEEEEEEEEEEEEET
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHccCcEEEECCCC-----CccCHHHHHHHHHHHH-HhcCCCCceEEEEEEEcC
Confidence 346678899999999988 688999999999999877664 3349999988765421 111 2222223333333
Q ss_pred CCCEEEEEEEEEE----eC-CCCcc--eeEEEEEEEE-eCCeEEEEccEE
Q 037095 89 DNGLTVLVTGCLI----GK-DNVRR--KFTQSFFLAP-QDKGYFVLNDIL 130 (334)
Q Consensus 89 ~ggvlI~VtG~v~----~~-d~~~r--~FsQtF~Lap-~~~~Y~V~NDiF 130 (334)
+ +-++.|... .. ++... ...-.++|.+ .+++|.|..|.-
T Consensus 88 D---~A~~~~~~~~~~t~~~~g~~~~~~g~~~~v~rK~~dG~W~i~~d~~ 134 (139)
T 3rob_A 88 P---MAYTRTHLHIKVTPRSGGAVRELAGHAMSIFRRSMFGEWQLARDAN 134 (139)
T ss_dssp T---EEEEEEEEEEEEEETTSCCCEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred C---eEEEEEEEEEEEecCCCCceeEeeccEEEEEEECCCCcEEEEEEhh
Confidence 2 233344333 22 33333 3336678888 466799998864
No 214
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=94.10 E-value=0.2 Score=41.09 Aligned_cols=109 Identities=8% Similarity=0.083 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHH-HHhcC-C-CccceEEEEEEEEEEeCCC
Q 037095 15 VVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEIND-MIVSL-D-YQNYNVQIFSADAQASYDN 90 (334)
Q Consensus 15 ~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~-~i~sL-~-~~~~~~~I~tvD~Q~s~~g 90 (334)
.--...++.||..|. .+.+.|..+|.++..+...+. ...|.++|.+ .+... . +....+++..+...... +
T Consensus 30 ~~i~~~~~~~~~A~~~~D~~~l~~l~a~Da~~~~~~g-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~g-d 103 (148)
T 3bb9_A 30 SAAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEGGK-----VERSLTEYANHHMLADMAYLKGLTITPKEHQITITG-D 103 (148)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETTE-----EECSHHHHHHTHHHHHHHHHHTEEEEEEEEEEEEET-T
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhhCCCeEEEeCCC-----ccCCHHHHHHHhHHHHHHhccCceEEeeeEEEEEcC-C
Confidence 345677889999888 688999999999987654443 2779999988 44321 1 12345666665555433 3
Q ss_pred CEEEEEEEEEEeCC-C--CcceeEEEEEE-EEeCCeEEEEccE
Q 037095 91 GLTVLVTGCLIGKD-N--VRRKFTQSFFL-APQDKGYFVLNDI 129 (334)
Q Consensus 91 gvlI~VtG~v~~~d-~--~~r~FsQtF~L-ap~~~~Y~V~NDi 129 (334)
..++.....+.... + ....+.-|++| ...+++|.|...-
T Consensus 104 ~A~~~~~~~~~~~~~G~~~~~~~r~T~v~~~k~~g~WkIvh~H 146 (148)
T 3bb9_A 104 IAISTSISHAQGEYKGKSIDSMTMETLVLIKQADGRWKITHVH 146 (148)
T ss_dssp EEEEEEEEEEEECCC--CEEEEEEEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEEEEEEeeeeCCcccccceEEEEEEeEEcCCcEEEEEEE
Confidence 33333333333321 1 12356678888 8888899998653
No 215
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=94.05 E-value=0.35 Score=39.39 Aligned_cols=113 Identities=7% Similarity=0.036 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCccccc-ccHHHHHHHHhcCC-----CccceEEEEEEEEEEeC
Q 037095 16 VGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSV-TTIKEINDMIVSLD-----YQNYNVQIFSADAQASY 88 (334)
Q Consensus 16 VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~-~G~~~I~~~i~sL~-----~~~~~~~I~tvD~Q~s~ 88 (334)
--..|+..|...++ .+.+.+..+|.+++.+.+.+. .. .|.++|.+.+..+. +..+.|.+..+......
T Consensus 20 ~I~~l~~~y~~a~D~~d~~~~~~lf~~Da~~~~~~g-----~~~~G~~~i~~~~~~~~~~~~~~~~~~h~~~~~~i~~~g 94 (155)
T 2rfr_A 20 EIRELIARYGPLADSGDAEALSELWVEDGEYAVVGF-----ATAKGRAAIAALIDGQTHRALMADGCAHFLGPATVTVEG 94 (155)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTS-----CCEESHHHHHHHHHSHHHHHHHHHCEEEEECCCEEEEET
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhcCCceEEEcCCC-----ccccCHHHHHHHHHhccccccCCCceeEeCCCeEEEEeC
Confidence 45678999999999 467899999999998877652 34 89999999888652 12346666654443322
Q ss_pred CCCEEEEEEEEEE--eCCCCccee---EEEEEEEEeCCeEEEEccEEEeecC
Q 037095 89 DNGLTVLVTGCLI--GKDNVRRKF---TQSFFLAPQDKGYFVLNDILRYVDE 135 (334)
Q Consensus 89 ~ggvlI~VtG~v~--~~d~~~r~F---sQtF~Lap~~~~Y~V~NDiFR~vd~ 135 (334)
+...+.....+. ..++ ...+ ...+.|...+++|.|..=.++++..
T Consensus 95 -d~A~~~~~~~~~~~~~~~-~~~~~~g~y~d~~~r~~g~Wri~~r~~~~~~~ 144 (155)
T 2rfr_A 95 -DTATARCHSVVFRCVSGT-FGSHRVSANRWTFRRTPAGWRAVRRENALLDG 144 (155)
T ss_dssp -TEEEEEEEEEEEEEETTE-EEEEEEEEEEEEEEEETTEEEEEEEEEEESSS
T ss_pred -CEEEEEEEEEEEEEcCCC-ceEEEeeeeEEEEEECCCEEEEEEEEEEecCC
Confidence 322222222111 1221 1111 2346777888899999987777643
No 216
>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0
Probab=93.85 E-value=0.86 Score=36.87 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhc-CCCccceEEEEEEEEEEeCCCCEEE
Q 037095 17 GNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVS-LDYQNYNVQIFSADAQASYDNGLTV 94 (334)
Q Consensus 17 G~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~s-L~~~~~~~~I~tvD~Q~s~~ggvlI 94 (334)
-.+-++.|+.-++ .+.+.|.+.|++++.+...+. |......+.++..+.+.+ -|.....++|.+++.. ++.-++
T Consensus 14 I~~~l~~y~~g~~~~D~~~l~~~f~pda~~~~~~~-G~~l~~~~~~e~~~~v~~~~p~~~~~~~I~~I~i~---gd~A~a 89 (125)
T 3duk_A 14 ITEVLNVYMNAAESGTGEEMSAAFHKDATIFGYVG-DKLAFNGPIKDLYDWHNSNGPAKNVQSRITNIDIV---GTVAHA 89 (125)
T ss_dssp HHHHHHHHHHHHHHCCHHHHGGGEEEEEEEEEEET-TEEEEEEETHHHHHHHHHHCCCTTCEEEEEEEEEE---TTEEEE
T ss_pred HHHHHHHHHHHHHhcCHHHHHHhCCCCcEEEEEcC-CCEEeeCCHHHHHHHHhccCCCCcccceEEEEEEE---CCEEEE
Confidence 3456899999998 577899999999998854222 330111234554455543 3444567888887764 233333
Q ss_pred EEEEEEEeCCCCcceeEEEEEEEEeCCeEEEEccEEEe
Q 037095 95 LVTGCLIGKDNVRRKFTQSFFLAPQDKGYFVLNDILRY 132 (334)
Q Consensus 95 ~VtG~v~~~d~~~r~FsQtF~Lap~~~~Y~V~NDiFR~ 132 (334)
-|. +. .-....|+-.|.|...+++|-|.|=+|++
T Consensus 90 ~v~--~~--~~~~~~f~D~l~L~k~dg~WkIv~K~~~~ 123 (125)
T 3duk_A 90 RVE--AE--NWTNFKFSDLFLLLKLDGKWTIVNKVFHL 123 (125)
T ss_dssp EEE--EE--CSSSCCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEE--EE--EcCCCeEEEEEEEEEeCCEEEEEEEEEEe
Confidence 321 11 11235899999999999999999999975
No 217
>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=93.78 E-value=0.5 Score=39.13 Aligned_cols=119 Identities=10% Similarity=0.078 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHhc--CcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcC--CCccceEEEEEEEEEEeCC
Q 037095 14 QVVGNAFVEQYYCILHQ--NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL--DYQNYNVQIFSADAQASYD 89 (334)
Q Consensus 14 ~~VG~~FV~qYY~~L~~--~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL--~~~~~~~~I~tvD~Q~s~~ 89 (334)
..--.+|+..|+..|+. +.+.+..+|.+++.+.+.+. | ...+.|.++|.+.+... ++..+.+.+..+......+
T Consensus 27 ~~~I~~l~~~y~~alD~~~D~d~~~~lfteDa~~~~~~~-g-~~~~~G~~~i~~~~~~~~~~~~~~~h~~~~~~I~~~~g 104 (163)
T 3b8l_A 27 RLAIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVFDLSGI-G-LTPQVGHAGIREFFTNVFANMSHHAHYLTNFAVTGYEG 104 (163)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHTTEEEEEEEECGGG-T-CCCEEHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHCcCCCHHHHHhhcCCCEEEEecCC-C-CCCccCHHHHHHHHHHhhccCCceEEEecCEEEEEeCC
Confidence 44567899999999997 66799999999998876432 1 12477999999888753 2333456666555542223
Q ss_pred CCEEEEEEEEE-Ee-CCCCcc--eeEEEEEEEEeCCeEEEEccEEEeec
Q 037095 90 NGLTVLVTGCL-IG-KDNVRR--KFTQSFFLAPQDKGYFVLNDILRYVD 134 (334)
Q Consensus 90 ggvlI~VtG~v-~~-~d~~~r--~FsQtF~Lap~~~~Y~V~NDiFR~vd 134 (334)
+...+.....+ .. .++... .-.-++.|...+++|.|..-.+++.-
T Consensus 105 d~A~~~~~~~~~~~~~~g~~~~~~g~y~d~~~r~dg~WrI~~r~~~~~~ 153 (163)
T 3b8l_A 105 DTASMRAYVIGMGVGKDGRAVTVNGRYFFEVRRTEKGWKATRYTMDFLM 153 (163)
T ss_dssp SEEEEEEEEEEEEEETTSCEEEEEEEEEEEEEEETTEEEEEEEEEEESS
T ss_pred CEEEEEEEEEEEEEcCCCCeEEEEEEEEEEEEEeCCEEEEEEEEEEEEe
Confidence 32322222221 11 222221 22345667778889999998887754
No 218
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=93.57 E-value=0.27 Score=46.80 Aligned_cols=114 Identities=22% Similarity=0.252 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHHHHh-cCcchhcccccCCCceecc-CCCCcccccccHHHHHHHHhcCCCccceEEEEEEEEEEeC
Q 037095 11 LSPQVVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRP-DQSGSMTSVTTIKEINDMIVSLDYQNYNVQIFSADAQASY 88 (334)
Q Consensus 11 ~~a~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~-g~~g~~~~~~G~~~I~~~i~sL~~~~~~~~I~tvD~Q~s~ 88 (334)
.....|-+.=|.+|+..|+ .+-+.+..+|.++..|.=+ +. .+.|+++|..++..- ..+.+.+...--+.+.-
T Consensus 188 ~~i~gi~~~tVl~Y~e~lNa~Df~a~aaLFA~Dg~LepPf~~-----PIvGreAI~~y~~~e-aq~~~l~P~~g~~ep~e 261 (323)
T 3mg1_A 188 VSIEGVTNATVLNYMDNLNANDFDTLIELFTSDGALQPPFQR-----PIVGKENVLRFFREE-CQNLKLIPERGVTEPAE 261 (323)
T ss_dssp CCBBTBCCHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTSC-----CEESHHHHHHHHHHH-CTTCEEEEEEEEEEECG
T ss_pred cCccCcchHHHHHHHHHhcccCHHHHHHHccCCCeeCCCCCC-----CccCHHHHHHHHHHH-hccCEEeeccCcccccc
Confidence 3445566888999999999 5779999999999988754 22 688999999998853 23468888888888888
Q ss_pred CCCEEEEEEEEEEeCC---CCcceeEEEEEEEEeCCeEEEEccEE
Q 037095 89 DNGLTVLVTGCLIGKD---NVRRKFTQSFFLAPQDKGYFVLNDIL 130 (334)
Q Consensus 89 ~ggvlI~VtG~v~~~d---~~~r~FsQtF~Lap~~~~Y~V~NDiF 130 (334)
+|+.-+.|+|.++..= +....-.=.|.|-++++-|+|.=|.+
T Consensus 262 ~g~~qi~vtGkVqTpwfGv~v~mnVaW~F~lN~~gkI~~v~i~LL 306 (323)
T 3mg1_A 262 DGFTQIKVTGKVQTPWFGGNVGMNIAWRFLLNPEGKIFFVAIDLL 306 (323)
T ss_dssp GGCEEEEEEEEEECTTTGGGCCEEEEEEEEECTTSCEEEEEEEEB
T ss_pred CCCceEEEEEEEEcccCCccccccceeEEEECCCCcEEEEEehhh
Confidence 8899999999998642 34456778899999988899876654
No 219
>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12
Probab=93.48 E-value=0.55 Score=38.14 Aligned_cols=107 Identities=11% Similarity=0.110 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhc--CcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC--CccceEEEEEEEEEEeCCCCE
Q 037095 17 GNAFVEQYYCILHQ--NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD--YQNYNVQIFSADAQASYDNGL 92 (334)
Q Consensus 17 G~~FV~qYY~~L~~--~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~--~~~~~~~I~tvD~Q~s~~ggv 92 (334)
...|++.++.-... +-+.|...|.++..|..++. ...|.+++.+.+..+- +.+.+++|..+......++++
T Consensus 12 ~~~~ie~W~~~~~~~~dl~~l~a~~a~d~~mv~p~G-----~~~g~~~~~~~~~~~~g~~pgl~i~i~~l~~~~~~~d~~ 86 (128)
T 1tp6_A 12 AHVAIRDWLAGDSRADALDALMARFAEDFSMVTPHG-----VVLDKTALGELFRSKGGTRPGLRIEIDGESLLASGVDGA 86 (128)
T ss_dssp HHHHHHHHHHTCCCTTHHHHHHTTEEEEEEEECTTS-----CEEEHHHHHHHHHHHTTCSTTCEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHcCCCcHhHHHHHHHhcCCCEEEECCCC-----eECCHHHHHHHHHHhhCCCCCeEEEEEEEEEEeecCCEE
Confidence 45667777775544 45689999999998876543 4789999999988652 345678887777766666777
Q ss_pred EEEEEEEEEeCCCCcceeEEEEEEEEe-CC--eEEEEccE
Q 037095 93 TVLVTGCLIGKDNVRRKFTQSFFLAPQ-DK--GYFVLNDI 129 (334)
Q Consensus 93 lI~VtG~v~~~d~~~r~FsQtF~Lap~-~~--~Y~V~NDi 129 (334)
++.-.+.=..++....+++ |.+|..+ ++ .|.++-+.
T Consensus 87 vv~y~~~~~~~~~~~~rrs-T~v~~~~~~g~~~W~~lHET 125 (128)
T 1tp6_A 87 TLAYREIQSDAAGRSERLS-TVVLHRDDEGRLYWRHLQET 125 (128)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEEEECTTCCEEEEEEEEE
T ss_pred EEEEEEEeccCCceeEEEE-EEEEEeCCCCCEEEEEEEEE
Confidence 7765543333343445677 8888655 44 48877665
No 220
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=93.33 E-value=0.77 Score=37.36 Aligned_cols=96 Identities=7% Similarity=-0.041 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHh-cCcchhcccccCCCceeccCCCC---cccccccHHHHHHHHhcCC--CccceEEEEEEEEEEeCCCC
Q 037095 18 NAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSG---SMTSVTTIKEINDMIVSLD--YQNYNVQIFSADAQASYDNG 91 (334)
Q Consensus 18 ~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g---~~~~~~G~~~I~~~i~sL~--~~~~~~~I~tvD~Q~s~~gg 91 (334)
..|++.||..|+ .+.+.|..+|+++..+..+|... ......|+++|.+.+..+. +..+++++..+-+ .++.
T Consensus 7 ~~~v~~~~~a~~~gD~~~l~~l~a~Dv~~~~~g~~~~~p~~g~~~G~~av~~~~~~~~~~~~~~~~~~~~~~~---~gd~ 83 (143)
T 3dm8_A 7 WRFSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIADSVRIYRYHRESVML---GIDS 83 (143)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEESCTTTCTTCEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEE---CSSE
T ss_pred HHHHHHHHHHHHCCCHHHHHHhcCCCeEEEecCCCCcCCCCccccCHHHHHHHHHHHHHhcCcceEEEEEEEE---cCCe
Confidence 689999999999 56789999999998776665421 1125789999999988764 2234455554432 2344
Q ss_pred EEEEEEEEEEeC-CCCc--ceeEEEEEE
Q 037095 92 LTVLVTGCLIGK-DNVR--RKFTQSFFL 116 (334)
Q Consensus 92 vlI~VtG~v~~~-d~~~--r~FsQtF~L 116 (334)
+.+.+.+..... .+.+ ..|+..|-+
T Consensus 84 v~v~~~~~~~~~~tG~~~~~~~~~~~~v 111 (143)
T 3dm8_A 84 AASMVRYSLTAAGTNRPISVRMALFTQF 111 (143)
T ss_dssp EEEEEEEEEEETTTCCEEEEEEEEEEEE
T ss_pred EEEEEEEEEEEeCCCCEEEEEEEEEEEE
Confidence 443433333322 2222 356666665
No 221
>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18
Probab=93.29 E-value=2.4 Score=34.49 Aligned_cols=114 Identities=11% Similarity=0.009 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHhcCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCCCccceEEEEEEEEEEeCCCCEE
Q 037095 14 QVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNYNVQIFSADAQASYDNGLT 93 (334)
Q Consensus 14 ~~VG~~FV~qYY~~L~~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~~~~~~~~I~tvD~Q~s~~ggvl 93 (334)
.+|-..|.+.|--+...+.+.|..+|.++..+.+.+. | ....|.++|..+...+.-....+.+.....+...++..+
T Consensus 11 ~eI~~~~~~y~~Al~~~D~~~L~~lf~~d~~~v~~~~-g--~~l~G~~~I~a~r~~~~~~~~~~~~~~~~i~~~g~d~A~ 87 (129)
T 2owp_A 11 AQVQAAFVEYERALVENDIEAMNALFWHTPETVRYGI-A--EVQHGGEAIRAWRERCEPVPKSRKLHRTVVTTFGTDFAT 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEECS-S--CEEESHHHHHHHHHHSCCCCTTCEEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhhccCCCcEEEeCC-C--CccCCHHHHHHHHHhcCCCCCceeecccEEEEecCCEEE
Confidence 4565555554444445788999999999986433222 2 167899999997666542222444544444433323333
Q ss_pred EEEEEEEEeCCCCcceeEEEEEEEEeC--CeEEEEccEEEee
Q 037095 94 VLVTGCLIGKDNVRRKFTQSFFLAPQD--KGYFVLNDILRYV 133 (334)
Q Consensus 94 I~VtG~v~~~d~~~r~FsQtF~Lap~~--~~Y~V~NDiFR~v 133 (334)
+. ..+...+.. ..+-||.+....+ +||.|...-...+
T Consensus 88 ~~--~~~~~~~~~-~~gr~t~vw~r~~~~~gWrIv~~H~S~~ 126 (129)
T 2owp_A 88 VS--TEFTSDATP-LLGRQMQTWARLSPADGWKIVAAHVSLI 126 (129)
T ss_dssp EE--EEEEETTEE-EEEEEEEEEEECSTTTCEEEEEEEEEEE
T ss_pred EE--EEEEECCCC-cceEEEEEEEECCCCCCEEEEEeeecCC
Confidence 32 233333322 2344455555666 7999987766555
No 222
>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17
Probab=93.11 E-value=1.1 Score=38.81 Aligned_cols=113 Identities=6% Similarity=0.054 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHh-cCcchhcccccCCC-----------------ceeccCCCCcccccccHHHHHHHHhcC--CCccceE
Q 037095 18 NAFVEQYYCILH-QNPDVVHRFYQESS-----------------MVSRPDQSGSMTSVTTIKEINDMIVSL--DYQNYNV 77 (334)
Q Consensus 18 ~~FV~qYY~~L~-~~p~~L~~fY~~~S-----------------~l~~~g~~g~~~~~~G~~~I~~~i~sL--~~~~~~~ 77 (334)
.+....||..|. .+.+.|..+|.++. .+.++|. ....|.++|.+.+..+ .....++
T Consensus 15 ~~~~~~~~~A~~~gD~~~l~alwa~d~~~~~~~~~~~~~~~~~v~~v~Pg~----~~l~G~~~I~~~~~~~f~~~~~~~~ 90 (170)
T 3cnx_A 15 GLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGW----PVLSGRGEVLRSYALIMANTEYIQF 90 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTTC----CEEEHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhcCCcccccccccccccccccEEEEcCCC----ccccCHHHHHHHHHHHHccCCeeEE
Confidence 456778888888 67889999999874 3345543 1688999999877643 1111355
Q ss_pred EEEEEEEEEeCCCCEEEEEEEEEEeCC---------CCc--ceeEEEEEEEEeCCeEEEEccEEEeecC
Q 037095 78 QIFSADAQASYDNGLTVLVTGCLIGKD---------NVR--RKFTQSFFLAPQDKGYFVLNDILRYVDE 135 (334)
Q Consensus 78 ~I~tvD~Q~s~~ggvlI~VtG~v~~~d---------~~~--r~FsQtF~Lap~~~~Y~V~NDiFR~vd~ 135 (334)
++..+....+. +..++.+...+...+ .+. +++.-|+++...+++|.|...-...+..
T Consensus 91 ~~~dv~v~~~g-D~A~v~~~~~~~~~~~~~~g~~~~g~~~~~~~raT~Vfrr~~ggWriv~hH~Sp~~~ 158 (170)
T 3cnx_A 91 FLTDVHVSVTG-DTALVTCTENILSGGPPPDDSDELGPLVGQLVVATNVFRRTPDGWKLWSHHASPVLA 158 (170)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEEEEC---------CCCEEEEEEEEEEEECCTTCCEEEEEEEEECCC
T ss_pred EEEEEEEEEeC-CEEEEEEEEEEeccCCccccccccCccccceEEEEEEEEEECCEEEEEEEecCCCCC
Confidence 55555544333 334444555555321 111 2355788888888899999988876654
No 223
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=93.03 E-value=0.048 Score=45.28 Aligned_cols=58 Identities=9% Similarity=0.147 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhc------CcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcC--CCccceEEEEE
Q 037095 19 AFVEQYYCILHQ------NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL--DYQNYNVQIFS 81 (334)
Q Consensus 19 ~FV~qYY~~L~~------~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL--~~~~~~~~I~t 81 (334)
.=|++||..++. +.+.|..||.+++++..++. ...|+++|.+++..+ .+..+++.+..
T Consensus 6 ~~v~ry~~~~d~~~~d~~d~~~l~~Lfa~Dav~~~~~~-----~~~G~~ai~~F~~~~~~a~~~~~~~~~~ 71 (131)
T 3er7_A 6 TTLDRYFDLFDASRTDEKAFDDLISLFSDEITFVLNGQ-----EQHGIDAWKQFVRMVFTANQDIKHMYAG 71 (131)
T ss_dssp CHHHHHHHHHHHTTTCHHHHHHHHHTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHHEEEEEEEECC
T ss_pred HHHHHHHHHHhhccCCccCHHHHHHHhCCCeEecCCCC-----CcCChHHHHHHHHHHHhhCcCceEEEEE
Confidence 348999999983 25789999999999933332 578999999999865 23344555544
No 224
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25
Probab=92.81 E-value=1.3 Score=36.79 Aligned_cols=114 Identities=10% Similarity=-0.057 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCCC-ccceEEEEEEEEEEeCCCCE
Q 037095 15 VVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDY-QNYNVQIFSADAQASYDNGL 92 (334)
Q Consensus 15 ~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~~-~~~~~~I~tvD~Q~s~~ggv 92 (334)
.--..++..|+..++ .+.+.+..+|.+++.+.+.+. ...|.++|.+.+...-. ..+.|.|..+...... +..
T Consensus 14 ~~I~~l~~~y~~a~D~~D~~~~~~lf~~Da~~~~~g~-----~~~G~~~i~~~~~~~~~~~~~~h~~~~~~i~~~g-d~A 87 (170)
T 2chc_A 14 LRIQALCARYCLTINTQDGEGWAGCFTEDGAFEFDGW-----VIRGRPALREYADAHARVVRGRHLTTDLLYEVDG-DVA 87 (170)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHTTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHHCCCCEEEEEEEEEEET-TEE
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHhcccCcEEEEeCCC-----CcCCHHHHHHHHHHhhcccceEEecCCeEEEEeC-CEE
Confidence 345689999999999 467899999999998877653 57899999988876411 1336666655544332 322
Q ss_pred EEEEEE--EEEeCCCCcc--eeEEEEEEEEeCCeEEEEccEEEeec
Q 037095 93 TVLVTG--CLIGKDNVRR--KFTQSFFLAPQDKGYFVLNDILRYVD 134 (334)
Q Consensus 93 lI~VtG--~v~~~d~~~r--~FsQtF~Lap~~~~Y~V~NDiFR~vd 134 (334)
.+.... .+...++... .-.-+..|...+++|.|..-.+.+.-
T Consensus 88 ~~~~~~~~~~~~~~g~~~~~~g~y~d~~~r~dg~Wri~~r~~~~~~ 133 (170)
T 2chc_A 88 TGRSASVVTLATAAGYKILGSGEYQDRLIKQDGQWRIAYRRLRNDR 133 (170)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred EEEEEEEEEEEcCCCCEEEEEEEEEEEEEEECCEEEEEEEEEEEec
Confidence 222211 1122232211 12234556677889999998887653
No 225
>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*
Probab=92.78 E-value=1.9 Score=34.61 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhc-CcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC
Q 037095 17 GNAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD 71 (334)
Q Consensus 17 G~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~ 71 (334)
-.+.|+.||..++. +.+.|..+|.++..+...+. ..+.|.++|.+.+..+.
T Consensus 24 ~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~~~~----~~~~G~~~i~~~~~~~~ 75 (149)
T 1nww_A 24 DEKIVLEFMDALTSNDAAKLIEYFAEDTMYQNMPL----PPAYGRDAVEQTLAGLF 75 (149)
T ss_dssp HHHHHHHHHHHGGGCCHHHHHTTBCSSCEEEETTS----CCEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHhCCCEEEEcCCC----CCccCHHHHHHHHHHHH
Confidence 46788999999885 66899999999998877653 15789999999988763
No 226
>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*
Probab=92.30 E-value=0.68 Score=40.81 Aligned_cols=83 Identities=14% Similarity=0.048 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhcCcchhcccccCCCceeccCC-CCcccccccHHHHHHHHhcCC--CccceEEEEEEEEEEeCCC-C
Q 037095 16 VGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQ-SGSMTSVTTIKEINDMIVSLD--YQNYNVQIFSADAQASYDN-G 91 (334)
Q Consensus 16 VG~~FV~qYY~~L~~~p~~L~~fY~~~S~l~~~g~-~g~~~~~~G~~~I~~~i~sL~--~~~~~~~I~tvD~Q~s~~g-g 91 (334)
--++=|++|+..+..+++.+..||.++..+.++.. .|....+.|+++|.+.+..+. +. ..++..+....+.++ .
T Consensus 42 ~nr~vV~~yl~~~~~D~~~~~eLfAeDav~e~P~~~~G~P~r~~GReai~~~~~~~~~~~~--d~~~~~~~v~~taDpd~ 119 (185)
T 3jum_A 42 HNRKIVEQYMHTRGEARLKRHLLFTEDGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFP--DWVWTDIQIFETQDPNW 119 (185)
T ss_dssp HHHHHHHHHHHCCGGGGGGGGGGEEEEEEEEESCCTTSSCEEEESHHHHHHHHHHHHHHST--TCEEEEEEEECCSSTTE
T ss_pred HHHHHHHHHHHHhccCHHHHHHhCCCCEEEEecCCCCCCCccccCHHHHHHHHHHHHhhCC--CCeeeEEEEEEecCCCE
Confidence 34566899999999999999999999999887532 355667899999999987653 22 234555555555444 3
Q ss_pred EEEEEEEEE
Q 037095 92 LTVLVTGCL 100 (334)
Q Consensus 92 vlI~VtG~v 100 (334)
+++-..|.-
T Consensus 120 VvvE~~~~G 128 (185)
T 3jum_A 120 FWVECRGEG 128 (185)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 555555543
No 227
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=92.30 E-value=1.1 Score=37.10 Aligned_cols=115 Identities=10% Similarity=0.100 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHhcCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC----CccceEEEEEEE-EEEeC
Q 037095 14 QVVGNAFVEQYYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD----YQNYNVQIFSAD-AQASY 88 (334)
Q Consensus 14 ~~VG~~FV~qYY~~L~~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~----~~~~~~~I~tvD-~Q~s~ 88 (334)
.+|-..|-+.|--+...+.+.|-.+|.++..+++.+..| ...|.++|.+.+.+-. +....+.+..+. .+...
T Consensus 10 ~ei~~~~~~~~~Al~~~D~~~l~~l~~~~~~~~~i~~~g---~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~v~g 86 (145)
T 3soy_A 10 QEITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPRG---HERGWSQIAENFYGTTMGKTFSKRTLKLDAPPAIHVYG 86 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHTTTBCCSSSCEEEETTE---EEESHHHHHHHCCCCCCCCTEEEEEEEESSCCEEEEET
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHhCCCCeEEEcCCC---cccCHHHHHHHHHHhhhhccccccceEEeeeeEEEEcC
Confidence 455555544444444578899999998875444433222 3689999998886422 221233344444 23333
Q ss_pred CCCEEE---EEEEEEEeCCCC-cceeEEEEEEEEeC-CeEEEEccEEE
Q 037095 89 DNGLTV---LVTGCLIGKDNV-RRKFTQSFFLAPQD-KGYFVLNDILR 131 (334)
Q Consensus 89 ~ggvlI---~VtG~v~~~d~~-~r~FsQtF~Lap~~-~~Y~V~NDiFR 131 (334)
+-.+.+ .+.|.+..++.. ...+-.|+++...+ ++|.|+.+-..
T Consensus 87 d~A~v~~~~~~~~~~~~~G~~~~~~~r~T~V~~r~~~ggWkIvh~H~S 134 (145)
T 3soy_A 87 NAAVAEFDWHFTAVRRDNGQTQHTTGRESQVWAKIPNTGWRIVHVHYS 134 (145)
T ss_dssp TEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred CEEEEEEEEEEEEEEcCCCCeeeeEEEEEEEEEEcCCCCEEEEEEecC
Confidence 322221 122322212221 22456777777744 89999987654
No 228
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=92.25 E-value=1.1 Score=36.03 Aligned_cols=104 Identities=12% Similarity=0.101 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCCC---ccceEEEEEEEEEEeCCCCEE
Q 037095 18 NAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDY---QNYNVQIFSADAQASYDNGLT 93 (334)
Q Consensus 18 ~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~~---~~~~~~I~tvD~Q~s~~ggvl 93 (334)
.+-|+.|+.-++ .+.+.|.+-|++++.|...+. |.. ...+.++-.+ +..-|. .....+|.++|.. ++.-+
T Consensus 12 ~~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~~-g~~-~~~~~~~~~~-v~~~p~~~~~~~~~~i~~I~i~---gd~A~ 85 (120)
T 3fka_A 12 TALVETYVMAMTRGDRPALERIFFGKASEVGHYE-GEL-LWNSRDAFIA-MCEDAADAETDPFWAISSVSVQ---GDIAM 85 (120)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEET-TEE-EEEEHHHHHH-HHHHHCCSSCCCCEEEEEEEEE---TTEEE
T ss_pred HHHHHHHHHHHHhcCHHHHHhhCCCCeEEEEecC-CcE-EEcCHHHHHh-hcCCccCCCCCceEEEEEEEEE---CCEEE
Confidence 344899999999 577899999999998754322 221 1223344444 432222 1235667777764 23333
Q ss_pred EEEEEEEEeCCCCcceeEEEEEEEEeCCeEEEEccEEEe
Q 037095 94 VLVTGCLIGKDNVRRKFTQSFFLAPQDKGYFVLNDILRY 132 (334)
Q Consensus 94 I~VtG~v~~~d~~~r~FsQtF~Lap~~~~Y~V~NDiFR~ 132 (334)
+.|. +.. ..+.|+..|.|...+++|-|.|=+|++
T Consensus 86 a~v~--~~~---~~~~f~D~~~L~k~dg~WkIv~K~~~~ 119 (120)
T 3fka_A 86 LHVE--NDW---AGMRFDDFLTVLLHEGSWRIVSKVYRI 119 (120)
T ss_dssp EEEE--EEE---TTEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEE--EEc---CCCceEEEEEEEEeCCEEEEEEEEEEc
Confidence 4343 222 246899999999999999999999987
No 229
>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}
Probab=92.13 E-value=1.2 Score=37.61 Aligned_cols=116 Identities=5% Similarity=-0.114 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhc-CcchhcccccCCCceeccCCCCcccccccHHHHHHHH-hcC--CCccceEEEEEEEEEEeCCC
Q 037095 15 VVGNAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMI-VSL--DYQNYNVQIFSADAQASYDN 90 (334)
Q Consensus 15 ~VG~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i-~sL--~~~~~~~~I~tvD~Q~s~~g 90 (334)
.--.+|+..|...|+. +.+.+..+|.+++.+.+.+. | .+.|.++|.+.+ ... ++..++|.|..+.......+
T Consensus 31 ~~I~~ll~ry~~alD~~d~d~~~~lfteDa~~~~~~~-g---~~~G~~~i~~~~~~~~~~~~~~t~H~i~n~~I~~~g~d 106 (176)
T 3a76_A 31 AAIQDLYSDKLIAVDKRQEGRLASIWWDDAEWTIEGI-G---TYKGPEGALDLANNVLWPMFHECIHYGTNLRLEFVSAD 106 (176)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETTT-E---EEEHHHHHHHHHHHTHHHHEEEEEEEEEEEEEEESSSS
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHhhccCCeEEEcCCC-c---cccCHHHHHHHHHHhhhcccCceEEecCCeEEEEcCCC
Confidence 3456899999999994 56799999999998866542 1 478999999988 542 34445777766555433213
Q ss_pred CEEEEEEEEEE--eCC-CCcce--eEEEEEEEEeCCeEEEEccEEEeec
Q 037095 91 GLTVLVTGCLI--GKD-NVRRK--FTQSFFLAPQDKGYFVLNDILRYVD 134 (334)
Q Consensus 91 gvlI~VtG~v~--~~d-~~~r~--FsQtF~Lap~~~~Y~V~NDiFR~vd 134 (334)
...+.....+. ... ..... -.-+..|...+++|.|..-.+.+.-
T Consensus 107 ~A~~~~~~~~~~~~~~~~~~~~~~gry~d~l~r~dg~WrI~~r~~~~~~ 155 (176)
T 3a76_A 107 KVNGIGDVLLLGNLVEGNQSILIAAVFTDEYERRDGVWKFSKRNACTNY 155 (176)
T ss_dssp EEEEEEEEEEEEEETGGGEEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred eEEEEEEEEEEEEecCCCceEEEEEEEEEEEEEECCEEEEEEEEEEEEe
Confidence 33332111221 121 11111 1223456677889999998777643
No 230
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=91.40 E-value=0.021 Score=45.22 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=24.8
Q ss_pred EEeCCCCCCCHHHHHHHh------------hcCCceeeceEE
Q 037095 300 FVGNLPDSATVDQLKLIF------------EQFGPVKPDGIQ 329 (334)
Q Consensus 300 yV~nLp~~~t~~~l~~~F------------~~fG~v~~~~i~ 329 (334)
++.||||++++++|++.| ++||.|....|.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~ 60 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVC 60 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 378899999999888777 999999998774
No 231
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=91.33 E-value=2.6 Score=32.32 Aligned_cols=106 Identities=8% Similarity=-0.020 Sum_probs=62.6
Q ss_pred HHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCCCccceEEEEEEEEEEeCCCCEEEEEE
Q 037095 19 AFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNYNVQIFSADAQASYDNGLTVLVT 97 (334)
Q Consensus 19 ~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~~~~~~~~I~tvD~Q~s~~ggvlI~Vt 97 (334)
+..+.|+..+. .+.+.|..++.++-.+...+ | ...|.+++.+.+.+-.......++..+..+...++.+++. .
T Consensus 10 ~l~~~~~~A~~~~D~~~l~~l~~~d~~~~~~~--G---~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~g~~a~~~~-~ 83 (123)
T 2r4i_A 10 DCEKKLLTAIQNNDVESLEVLLHDDLLFIIPS--G---ETVTKETDIAAYSSGKIALRAVVPSDYIIRIIHDTVVVSV-N 83 (123)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEEEEEECTT--S---CEECHHHHHHHHHTTCEEEEEEEEEEEEEEEETTEEEEEE-E
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCcCeEEECCC--C---CCccHHHHHHHHhcCCeEEEEEeecccEEEEECCEEEEEE-E
Confidence 44566776655 68899999999975554443 3 2457777667666543222356666777776655444443 2
Q ss_pred EEEE--eCCCC-cceeEEEEEEEEeCCeEEEEccEE
Q 037095 98 GCLI--GKDNV-RRKFTQSFFLAPQDKGYFVLNDIL 130 (334)
Q Consensus 98 G~v~--~~d~~-~r~FsQtF~Lap~~~~Y~V~NDiF 130 (334)
..+. .++.. ...+-+|.+....+++|.|...-.
T Consensus 84 ~~~~~~~~g~~~~~~~r~t~vw~r~~g~W~iv~~h~ 119 (123)
T 2r4i_A 84 IEIKGEYMEHTLDNTFRYLRVWKLFDGNWKVIAGSC 119 (123)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECCcceeEEEEEEEEEEEeCCeEEEEEEEE
Confidence 3332 23322 223444566677888999876543
No 232
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=91.31 E-value=3.1 Score=33.13 Aligned_cols=111 Identities=12% Similarity=0.075 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcC--CCccceEEEEEEEEEEeCCCCE
Q 037095 16 VGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL--DYQNYNVQIFSADAQASYDNGL 92 (334)
Q Consensus 16 VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL--~~~~~~~~I~tvD~Q~s~~ggv 92 (334)
--.+-+..|...++ .+.+.|...|++++.+......|.. ...+.++..+.+..- +.....+.|..++.. . +.-
T Consensus 13 aI~~~~~~y~~a~~~~D~~~l~~~f~~da~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~i~--g-d~A 88 (128)
T 3blz_A 13 AIVEVLSKYNEGGKKADSTIMRPAFSSQATIFGVDVDNKL-TGGPIQGLFDVIDNVFHPSPEAKAAIARIDIV--G-TAA 88 (128)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHGGGEEEEEEEEEECTTSCE-EEEETHHHHHHHHHTCCCCTTCEEEEEEEEEE--T-TEE
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEEeCCCcE-EecCHHHHHHHHHhcCCCCccccCeEEEEEEE--C-CEE
Confidence 44567899999999 5778999999999987542211221 122345555555443 333346667665543 2 333
Q ss_pred EEEEEEEEEeCCCCcceeEEEEEEEEeCCeEEEEccEEEeec
Q 037095 93 TVLVTGCLIGKDNVRRKFTQSFFLAPQDKGYFVLNDILRYVD 134 (334)
Q Consensus 93 lI~VtG~v~~~d~~~r~FsQtF~Lap~~~~Y~V~NDiFR~vd 134 (334)
++.+... ... ..+|...|.|...+++|.|.+-+|+...
T Consensus 89 ~a~~~~~-~~~---~~~~~d~~~l~k~dg~WkI~~~~~~~~~ 126 (128)
T 3blz_A 89 SARIDTD-DIS---GFRFTDFFNLLKVEGKWTVVSKIYHTHP 126 (128)
T ss_dssp EEEEEEE-EET---TEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred EEEEEEE-EcC---CCceEEeEEEEEECCEEEEEEEEEEecc
Confidence 3333321 121 3468899999999999999999998754
No 233
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=91.08 E-value=0.19 Score=40.79 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=28.4
Q ss_pred CcceEEEeCCCC-----CCCHHHHHHHhhcCCceeeceEEe
Q 037095 295 KGHSIFVGNLPD-----SATVDQLKLIFEQFGPVKPDGIQV 330 (334)
Q Consensus 295 ~~~~iyV~nLp~-----~~t~~~l~~~F~~fG~v~~~~i~v 330 (334)
.+..|+++|+-- +--++||+++|++||.|....|..
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~ 59 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQ 59 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEee
Confidence 356899999842 234799999999999999887754
No 234
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19
Probab=90.94 E-value=1.1 Score=35.49 Aligned_cols=64 Identities=14% Similarity=0.251 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcC-c----chhcccccCCCceeccCCCCcccccccHHHHHHHHhcC--CCccceEEEE-EEEEEE
Q 037095 18 NAFVEQYYCILHQN-P----DVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL--DYQNYNVQIF-SADAQA 86 (334)
Q Consensus 18 ~~FV~qYY~~L~~~-p----~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL--~~~~~~~~I~-tvD~Q~ 86 (334)
+.++++|+..++.. + +.|..+|.++..+.-+.. .+.|.++|...|..+ .+.++++.+. .++.+.
T Consensus 6 ~~~v~ry~~aw~~~d~~~~~~~l~~l~a~D~~~~dP~~-----~~~G~~ai~~~~~~~~~~~~~~~f~~~~~~~~~~ 77 (121)
T 3dxo_A 6 LTIAQTYLAAWNEEDNERRRHLVGQAWAENTRYVDPLM-----QGEGQQGIAAMIEAARQKFPGYRFVLAGTPDGHG 77 (121)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHEEEEEEEECSSC-----EEEHHHHHHHHHHHHHHHSTTCEEEEEEEEEEET
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEEECCCC-----CcCCHHHHHHHHHHHHHHCCCcEEEEccCcceeC
Confidence 56788888888752 2 479999999999987754 589999999988754 2457788887 667663
No 235
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=90.53 E-value=0.66 Score=36.22 Aligned_cols=90 Identities=6% Similarity=-0.027 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhc-CcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC--CccceEEEEEEEEEEeCCCCEEEE
Q 037095 19 AFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD--YQNYNVQIFSADAQASYDNGLTVL 95 (334)
Q Consensus 19 ~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~--~~~~~~~I~tvD~Q~s~~ggvlI~ 95 (334)
+.|+.||..|+. +.+.+..++.++......|. ....|++++.+.+..+. +....++|..+=++ ++ .|.
T Consensus 4 ~~v~~~~~a~~~gD~~~~~~~ladDv~w~~~g~----~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~i~~---Gd--~Vv 74 (112)
T 3f14_A 4 TTHYSIAQHFSSGDFPAVYACFNDIIEWNIIGN----QVVKGKADVIDFCNKMLPEMKGAVLTNDNVIQN---EN--QIV 74 (112)
T ss_dssp HHHHHHHHHHHTTCGGGTGGGEEEEEEEEETTT----EEEESHHHHHHHHHHHHHHHHTSEEEEEEEEEC---SS--EEE
T ss_pred HHHHHHHHHHHcCCHHHHHHhcCCceEEEEcCC----ccEecHHHHHHHHHHHHhhcCCcEEEEEEEEEe---CC--EEE
Confidence 579999999994 56889999998866555554 25789999998887663 21245666653322 23 455
Q ss_pred EEEEEEe--CCC--CcceeEEEEEEE
Q 037095 96 VTGCLIG--KDN--VRRKFTQSFFLA 117 (334)
Q Consensus 96 VtG~v~~--~d~--~~r~FsQtF~La 117 (334)
|.|.+.. .++ ....|+..|-+.
T Consensus 75 v~~~~~~~~~~g~~~~~~~~~vf~~~ 100 (112)
T 3f14_A 75 IEGKCRYFDAEGKEAFVSYCDIYRFE 100 (112)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCEEEEEEEEEEEEe
Confidence 6666553 222 234677777774
No 236
>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}
Probab=90.52 E-value=2.8 Score=34.42 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=43.9
Q ss_pred HHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC--CccceEEEEE
Q 037095 19 AFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD--YQNYNVQIFS 81 (334)
Q Consensus 19 ~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~--~~~~~~~I~t 81 (334)
+.|+.||..++ .+.+.|..||.++..+.-... | ..+.|+++|.+.+..+. +.+++++|..
T Consensus 29 eiv~~y~~A~n~~D~d~~~~l~a~D~v~~d~~~-g--~~~~Greai~~~~~~~~~~~~d~~~~v~~ 91 (158)
T 4h3u_A 29 EIVTAWAAAWTGTNPNALGTLFAADGTYVDHAI-G--ATMTGREQISGWKARTDAMIENVHVTITK 91 (158)
T ss_dssp HHHHHHHHHHHSSCHHHHHTTEEEEEEEEETTT-T--EEEESHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCHHHHHHHhcccceEeccCC-C--ceEecchhhhhhhhhhhccCCccceeEeE
Confidence 46889999998 578999999999998764432 1 25789999999988763 3344444443
No 237
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=90.22 E-value=0.35 Score=38.11 Aligned_cols=65 Identities=8% Similarity=0.187 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHh-cCcchhcccccCCCceecc------CCCCcccccccHHHHHHHHhcC--CCccceEEEEEE
Q 037095 16 VGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRP------DQSGSMTSVTTIKEINDMIVSL--DYQNYNVQIFSA 82 (334)
Q Consensus 16 VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~------g~~g~~~~~~G~~~I~~~i~sL--~~~~~~~~I~tv 82 (334)
-.+.+++.||..++ .+.+.|..+|.++..+..+ |..+ ..+.|+++|.+.+..+ .+.++++++..+
T Consensus 9 ~~~~~~~~~~~a~n~~D~~~l~~l~a~D~v~~~p~~~~~~g~~~--~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~ 82 (122)
T 3h3h_A 9 FAQQFSREWIDAWNAHDLDAILSHYADGFEMSSPMIVQIAGEPS--GRLRGKEQVGAYWREALRMIPDLHFEWIAT 82 (122)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECHHHHHHHC-CC--CEEEHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred HHHHHHHHHHHHHhccCHHHHHHhcCCCEEEECCCcccccCCCC--CcEEcHHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 35789999999998 5778999999999988754 1000 1688999999988764 133456666544
No 238
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=90.18 E-value=0.18 Score=39.85 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=26.2
Q ss_pred cceEEEeCC--CCCC--------CHHHHHHHhhcCCceeeceEE
Q 037095 296 GHSIFVGNL--PDSA--------TVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 296 ~~~iyV~nL--p~~~--------t~~~l~~~F~~fG~v~~~~i~ 329 (334)
+..|.++|+ |... .+++|+++|++||.|....|.
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~ 48 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIP 48 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECC
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEe
Confidence 456788887 3333 457999999999999988764
No 239
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10
Probab=89.70 E-value=3.1 Score=33.11 Aligned_cols=55 Identities=13% Similarity=0.214 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHh-cCcchhcccccCCCceeccCC-CCcccccccHHHHHHHHhcCC
Q 037095 17 GNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQ-SGSMTSVTTIKEINDMIVSLD 71 (334)
Q Consensus 17 G~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~-~g~~~~~~G~~~I~~~i~sL~ 71 (334)
-...|+.||..++ .+.+.|..+|.++..+..+.. .|....+.|.++|.+.+..+.
T Consensus 12 ~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~~~g~~~~~~G~~~i~~~~~~~~ 68 (150)
T 1s5a_A 12 ACETLRKFMAYMLEKDMKSWTELWDENAVFEFPYAPEGSPKRIEGKAAIYDYIKDYP 68 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCTTSCSEEESHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhCCCCEEEEeecCCCCCCccccCHHHHHHHHHHhh
Confidence 4678899999987 467899999999998877521 233335789999999988763
No 240
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=89.52 E-value=3.8 Score=32.80 Aligned_cols=63 Identities=6% Similarity=0.061 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCCCccceEEEEEE
Q 037095 17 GNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNYNVQIFSA 82 (334)
Q Consensus 17 G~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~~~~~~~~I~tv 82 (334)
-++-|+.||..|. .+.+.|..||.++..+.++.. ...+.|+++|.+++..++-....++|..+
T Consensus 7 ~~~~v~~~~~a~~~~D~~~l~~llaeD~v~~~P~~---~~~~~Gr~~~~~~~~~~~~~~~~~~i~~~ 70 (128)
T 3en8_A 7 IREALNAHWQASAAGDFDAEHDIYDDDAICDYPQS---GERILGRMNLQALRSHHPGKPAGFEVRRI 70 (128)
T ss_dssp HHHHHHHHHHHHHHTCHHHHTTTEEEEEEEEETTT---TEEEESHHHHHHHHHHTTCSCSEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECCCC---CCEEECHHHHHHHHHHCCCCCcceEEEEE
Confidence 4677999999988 567899999999999988753 12578999999988887743222555443
No 241
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=89.50 E-value=5.6 Score=32.02 Aligned_cols=61 Identities=8% Similarity=-0.104 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC
Q 037095 10 ALSPQVVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD 71 (334)
Q Consensus 10 ~~~a~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~ 71 (334)
.....++.++.++.||..+. .+.+.|..++.++..+.++|. +......|+++|.+.|..+.
T Consensus 7 ~~~~~~~~~~~~~~f~~A~~~gD~~~l~~lla~D~v~~~pg~-~~~g~~~G~~~v~~~~~~~~ 68 (134)
T 3dmc_A 7 SDNTLKVAHQGFEFFTQGLATGEWQKFLDMLTEDFTFWFPMG-EFHGLNVGKERAKEFFTYVS 68 (134)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSCCHHHHTTEEEEEEEEESSG-GGBEEEESHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHcCCCEEEEecCC-CCCccchhHHHHHHHHHHHH
Confidence 45567889999999999987 677899999999999988875 33346889999988877653
No 242
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=88.94 E-value=4.5 Score=31.80 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC
Q 037095 17 GNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD 71 (334)
Q Consensus 17 G~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~ 71 (334)
..+.|+.||..++ .+.+.|..+|+++..+..++. ....|.++|..++..++
T Consensus 10 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~p~~----~~~~G~~~~~~~~~~~~ 61 (140)
T 3i0y_A 10 ATGLVQAYYEAFNRGDWDAMLAFLAEDVAHDLNQG----PREIGRAAFASFLQRMN 61 (140)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECTTS----CEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHcCCcEEEEcCCC----CceEcHHHHHHHHHHHh
Confidence 3578999999997 577899999999987655431 26889999999988875
No 243
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10
Probab=88.86 E-value=4.2 Score=33.60 Aligned_cols=54 Identities=9% Similarity=0.098 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhc-CcchhcccccCCCceeccCC-CCcccccccHHHHHHHHhcCC
Q 037095 18 NAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQ-SGSMTSVTTIKEINDMIVSLD 71 (334)
Q Consensus 18 ~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~-~g~~~~~~G~~~I~~~i~sL~ 71 (334)
.+.|++||..|+. +.+.|..+|.++..+..++. .|....+.|+++|.+.+..+.
T Consensus 26 ~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~~~g~~~~~~G~~ai~~~~~~~~ 81 (163)
T 1z1s_A 26 KEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLFP 81 (163)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEECSSCCTTSCCEEESHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCEEEECcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 4568889999885 66899999999999887643 233335789999999998764
No 244
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A
Probab=88.43 E-value=1.5 Score=33.29 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC
Q 037095 17 GNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD 71 (334)
Q Consensus 17 G~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~ 71 (334)
-...++.||..++ .+.+.|..+|.++..+..+.. + ..+.|.++|.+.+..+-
T Consensus 7 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~-~--~~~~G~~~i~~~~~~~~ 59 (125)
T 1ohp_A 7 MTAVVQRYVAALNAGDLDGIVALFADDATVENPVG-S--EPRSGTAAIREFYANSL 59 (125)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHTTEEEEEEEESSTT-S--CCEESHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCCCeEEECCCC-C--CCccCHHHHHHHHHHhc
Confidence 4678999999988 467899999999998876532 1 26889999999998764
No 245
>3ff0_A Phenazine biosynthesis protein PHZB 2; cystatin-like fold, antibiotic biosynthesis, virulence, STRU genomics; 1.90A {Pseudomonas aeruginosa}
Probab=87.89 E-value=3 Score=35.91 Aligned_cols=85 Identities=13% Similarity=0.077 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHhcCcchhcccccCCCc---eeccCCCCcccccccHHHHHHHHhcCC--CccceEEEEEEEEEEeC
Q 037095 14 QVVGNAFVEQYYCILHQNPDVVHRFYQESSM---VSRPDQSGSMTSVTTIKEINDMIVSLD--YQNYNVQIFSADAQASY 88 (334)
Q Consensus 14 ~~VG~~FV~qYY~~L~~~p~~L~~fY~~~S~---l~~~g~~g~~~~~~G~~~I~~~i~sL~--~~~~~~~I~tvD~Q~s~ 88 (334)
.+--++-|++|+..+..+++.++.||.++.. +.- ..|....+.|+++|.+++..+. +. ..++..+....+.
T Consensus 18 r~~Nr~vV~~~l~~~~~D~~~~~~LfAeD~v~~~~e~--~~G~P~~~~Gre~l~~~~~~~~~~~~--~~~~~~~~i~~t~ 93 (163)
T 3ff0_A 18 RRKNRETVVKYMNTKGQDRLRRHELFVEDGCGGLWTT--DTGSPIVIRGKDKLAEHAVWSLKCFP--DWEWYNIKVFETD 93 (163)
T ss_dssp HHHHHHHHHHHHTCCGGGGGGGGGGEEEEEEEEESSC--SSSSCEEEESHHHHHHHHHHHHHHST--TCEEEEEEEEEBS
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCcccceeeEE--CCCCCcceecHHHHHHHHHHHHhhCC--CceeeeEEEEEcC
Confidence 3445778999999898999999999999988 542 2255667899999999887643 22 2345556666665
Q ss_pred CC-CEEEEEEEEEEe
Q 037095 89 DN-GLTVLVTGCLIG 102 (334)
Q Consensus 89 ~g-gvlI~VtG~v~~ 102 (334)
++ .+++-..|.-+.
T Consensus 94 Dpd~vvvE~~~~g~i 108 (163)
T 3ff0_A 94 DPNHFWVECDGHGKI 108 (163)
T ss_dssp STTEEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEEE
Confidence 54 455555554443
No 246
>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}
Probab=87.67 E-value=7.3 Score=31.83 Aligned_cols=51 Identities=10% Similarity=0.224 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC
Q 037095 17 GNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD 71 (334)
Q Consensus 17 G~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~ 71 (334)
.++.|+.||..++ .+.+.|..+|.++..+..+. | ....|.++|.+.+..+.
T Consensus 22 ~~~lv~~~~~a~~~~D~~~l~~l~a~D~v~~~p~--g--~~~~G~e~i~~~~~~~~ 73 (151)
T 3f7x_A 22 ATELVNAYYAAFNAGDMPAFLALLSEDVIHDINQ--G--ERQMGKARFAAFMEKMN 73 (151)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECTT--S--CEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECCC--C--CCcCCHHHHHHHHHHHH
Confidence 4678999999988 56789999999999875432 2 26889999999988764
No 247
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=87.51 E-value=7.1 Score=30.83 Aligned_cols=65 Identities=11% Similarity=0.134 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHH-HHHhcCC--CccceEEEEEE
Q 037095 18 NAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEIN-DMIVSLD--YQNYNVQIFSA 82 (334)
Q Consensus 18 ~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~-~~i~sL~--~~~~~~~I~tv 82 (334)
.+.|+.||..|. .+.+.|..+|+++..+..++.........|.++|. ..+..|. +..+++++..+
T Consensus 15 ~~~v~~~~~a~~~gD~~~~~~l~a~D~~~~~~~~~p~~g~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~ 83 (140)
T 3ec9_A 15 YQIVADHYAASDRHDPAAMMADIAPAIEWTEMAGFPCAGTYRSADEIVRNVFRRLGEEWDGYTFKLDAL 83 (140)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECTTSTTCEEECSHHHHHHHTHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHhcCCCeEEEEcCCCccceEEcCHHHHHHHHHHHHHhhCCcceeEEEEE
Confidence 466888999887 46789999999999877664211113578999995 5666552 22334444443
No 248
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=87.40 E-value=5.2 Score=31.07 Aligned_cols=64 Identities=14% Similarity=0.067 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhc-CcchhcccccCCCceeccCC---CCcccccccHHHHHHHHhcCC--CccceEEEEE
Q 037095 18 NAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQ---SGSMTSVTTIKEINDMIVSLD--YQNYNVQIFS 81 (334)
Q Consensus 18 ~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~---~g~~~~~~G~~~I~~~i~sL~--~~~~~~~I~t 81 (334)
.+-|++||..+.. +.+.+..+|+++..+..++. .+......|.++|.+.+..+. +.+.+++|..
T Consensus 6 ~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~~~~~~p~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 75 (132)
T 3ebt_A 6 MQTVRESYEAFHRRDLPGVLAALAPDVRWTHPDGMSPYGLGGTKHGHDEVIAFIRHVPTHIAEMRLAPDE 75 (132)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECGGGGGGTCCEEEEHHHHHHHHHHHGGGTEEEEEEEEEE
T ss_pred HHHHHHHHHHHhccCHHHHHHhcCCCEEEEeCCCCCCcccCCcCcCHHHHHHHHHHHHhhCCceEEEEeE
Confidence 4568888988884 67899999999988766531 000136789999999988774 2234444443
No 249
>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}
Probab=87.28 E-value=9.9 Score=31.30 Aligned_cols=62 Identities=8% Similarity=0.081 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhc-CcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcC--CCccceEEEEEE
Q 037095 17 GNAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL--DYQNYNVQIFSA 82 (334)
Q Consensus 17 G~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL--~~~~~~~~I~tv 82 (334)
-.+.|+.||..++. +.+.|..||+++..+..+.. | ...|.++|.+.+..+ .|.+++++|..+
T Consensus 36 n~~~v~~~~~a~~~~d~~~l~~~~a~D~v~~~p~~-g---~~~G~e~~~~~~~~~~~~~pd~~~~i~~~ 100 (159)
T 3k0z_A 36 MVHAAQRFYAFWDTGKEELIPQTVTENFFDHTLPK-G---RPQGTEGLKFAAQNFRKIVPNIHCEIEDL 100 (159)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHEEEEEEESSCCT-T---CCSSHHHHHHHHHHHHTTCCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHcCCCeEEecCCC-C---CCCCHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 46789999999984 67899999999987765532 2 467999998887755 244566666544
No 250
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=87.28 E-value=2.9 Score=32.29 Aligned_cols=62 Identities=5% Similarity=-0.015 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhc-CcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC--CccceEEEEEE
Q 037095 18 NAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD--YQNYNVQIFSA 82 (334)
Q Consensus 18 ~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~--~~~~~~~I~tv 82 (334)
.+.|+.||..|+. +.+.+..||.++.....+.. .....|+++|.+.+..+- +.+.+++|..+
T Consensus 5 ~~~v~~~~~a~n~~D~~~~~~~~a~D~v~h~~~~---~~~~~G~~~~~~~~~~~~~~~p~~~~~i~~~ 69 (117)
T 3ff2_A 5 LETAKAMIAAYNAQDVDTYVSYMTDDACEANYRG---DVVREGKEGTRSGLAAAFARWPQNHAEIKDA 69 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTS---CEEECHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHHHHHHcccCHHHHHHhcCCcEEEEeCCC---CccccCHHHHHHHHHHHHhhCCCceEEEEEE
Confidence 4679999999984 67799999998876544321 125789999998877541 22346666544
No 251
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=87.28 E-value=5.1 Score=31.93 Aligned_cols=109 Identities=7% Similarity=0.018 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCCCccceEEEEEEEEEEeCCCC
Q 037095 13 PQVVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQNYNVQIFSADAQASYDNG 91 (334)
Q Consensus 13 a~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~~~~~~~~I~tvD~Q~s~~gg 91 (334)
.++| .+..++|+..+. .+.+.|..+|.++-.+.+.+ |. ..+.++..+.+.+-...-...++.....+...++.
T Consensus 13 ~~~I-~~l~~~~~~A~~~~D~~~l~~L~~~d~~~v~~~--G~---~~~~~~~l~~~~~g~~~~~~~~~~~~~v~~~g~d~ 86 (134)
T 3fsd_A 13 ADDI-AFYEERLRAAMLTGDLKGLETLLADDLAFVDHT--GC---VKTKQTHLEPYRAGLLKLSRLDLSDAVVRAAGEDG 86 (134)
T ss_dssp -CCH-HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECTT--SC---EECHHHHHHHHHTTCEEEEEEEEEEEEEEESSTTE
T ss_pred HHHH-HHHHHHHHHHHHhCCHHHHHhhcCCCEEEECCC--Cc---CccHHHHHHHHHcCCceEEEEEEeccEEEEeCCCE
Confidence 3444 444566666554 78999999999987666543 22 33455544555542211124556666666655544
Q ss_pred EEEEEEEEEEe----CCCCc-ceeEEEEEEEEeCCe--EEEEccE
Q 037095 92 LTVLVTGCLIG----KDNVR-RKFTQSFFLAPQDKG--YFVLNDI 129 (334)
Q Consensus 92 vlI~VtG~v~~----~d~~~-r~FsQtF~Lap~~~~--Y~V~NDi 129 (334)
.++ +|.+.. ++... ..+-+|-+....+++ |-|+..-
T Consensus 87 Avv--~~~~~~~~~~~g~~~~~~~~~t~vw~k~~g~~gWriv~~h 129 (134)
T 3fsd_A 87 RVV--VVRAVTAGVYDGEAFTETLRFTRIWRRTQGPAGWKLVAGH 129 (134)
T ss_dssp EEE--EEEEEEEEEETTEEEEEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred EEE--EEEEEEEEEeCCcEEEEEEEEEEEEEECCCCccceEeEeE
Confidence 333 444433 22221 233344444566666 9887643
No 252
>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}
Probab=87.09 E-value=6.3 Score=32.23 Aligned_cols=100 Identities=5% Similarity=0.002 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCc--chhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC--CccceEEEEEEEEEEeCCCCEE
Q 037095 18 NAFVEQYYCILHQNP--DVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD--YQNYNVQIFSADAQASYDNGLT 93 (334)
Q Consensus 18 ~~FV~qYY~~L~~~p--~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~--~~~~~~~I~tvD~Q~s~~ggvl 93 (334)
++-++.||..+.+.. +.|..||.++..+.-+...+ +....|+++|.+++..+. +..+.++|.. +...++.+.
T Consensus 23 kevv~r~~e~~~~gd~~~~l~~lya~D~v~~dp~~~~-~~~~~G~eai~~~~~~~~~~~~~~~~~i~~---~~v~gd~v~ 98 (136)
T 3hk4_A 23 AEIAKDFTELLKQGDNAGAAEKYNADDIASYEAMEGP-MAVSHGKEALRQKSQWWQENHEVHGGSVEG---PYVNGDQFA 98 (136)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHEEEEEEEECSSCST-TSEEESHHHHHHHHHHHHHTEEEEEEEEEE---EEEETTEEE
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHCCCCEEEEcCCCCC-ccccCCHHHHHHHHHHHHhcCCeeeeeecc---eEEcCCEEE
Confidence 345677777877654 46899999999988764311 225789999999887653 2222233322 222245455
Q ss_pred EEEEEEEEeC-CCCcceeEEEEEEEEeCC
Q 037095 94 VLVTGCLIGK-DNVRRKFTQSFFLAPQDK 121 (334)
Q Consensus 94 I~VtG~v~~~-d~~~r~FsQtF~Lap~~~ 121 (334)
+.-+...+.. ++.+..+...-++.-.++
T Consensus 99 v~~~~~gth~~tG~~i~~~~i~v~rv~DG 127 (136)
T 3hk4_A 99 LRFKFDVTPKATGERVTMDEVGLYTVKNG 127 (136)
T ss_dssp EEEEEEEEETTTCCCEEEEEEEEEEEETT
T ss_pred EEEEEEEEECCCCcEEEEEEEEEEEEECC
Confidence 5444444544 344556666666655443
No 253
>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25
Probab=86.57 E-value=11 Score=30.20 Aligned_cols=110 Identities=6% Similarity=0.014 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHhc-CcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcC---CCccceEEEEEEEEEEeCCC
Q 037095 15 VVGNAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL---DYQNYNVQIFSADAQASYDN 90 (334)
Q Consensus 15 ~VG~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL---~~~~~~~~I~tvD~Q~s~~g 90 (334)
.--..|+..|...|+. +.+.+..+|.+++.+...+ | ...|.++|.+.+... ....+.|.|..+-.... ++
T Consensus 10 ~~I~~l~~rya~~lD~~d~~~~~~lft~Da~~~~~~--g---~~~g~~~i~~~~~~~~~~~~~~t~H~i~n~~i~~~-~d 83 (144)
T 2rgq_A 10 LEIMELAARFEMSLDKEDVENYLATFASDGALQGFW--G---IAKGKEELRQGFYAMLDTFARGKRHCSSNAIIQGN-YD 83 (144)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETT--E---EEESHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEC-SS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHhhccCcEEEEcCC--C---CCCCHHHHHHHHHHHHhhCCCCcEEecCCeEEEEe-CC
Confidence 4457899999999994 6679999999999876652 2 247999998887642 11235777877666332 22
Q ss_pred CEEEEEEEEEE--eCCCCccee--EEEEEEEEeCCeEEEEccEEEe
Q 037095 91 GLTVLVTGCLI--GKDNVRRKF--TQSFFLAPQDKGYFVLNDILRY 132 (334)
Q Consensus 91 gvlI~VtG~v~--~~d~~~r~F--sQtF~Lap~~~~Y~V~NDiFR~ 132 (334)
...+.+.+. ........+ .-...|...+++|.|..-.+.+
T Consensus 84 --~a~~~~~~~~~~~~~~~~~~~g~y~d~~~r~dg~Wri~~r~~~~ 127 (144)
T 2rgq_A 84 --EATMESYLTVVNREDLNRAGSAFVKDQVRKINGKWYLILRQIEV 127 (144)
T ss_dssp --EEEEEEEEEEEESSSSCEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred --EEEEEEEEEEEEecCCeEEEEEEEEEEEEEECCEEEEEEEEEEe
Confidence 233333332 111111111 1234566777889988866643
No 254
>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, LYAS structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=86.13 E-value=7.5 Score=30.69 Aligned_cols=63 Identities=8% Similarity=0.116 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC--Cc-cceEEEEEEE
Q 037095 18 NAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD--YQ-NYNVQIFSAD 83 (334)
Q Consensus 18 ~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~--~~-~~~~~I~tvD 83 (334)
.+.|++||..++ .+.+.+..+|+++..+..++.. ....|.++|.+.+..+- +. +++++|..+-
T Consensus 5 ~~~v~~~~~a~~~~d~~~~~~~~a~d~~~~~~~~~---~~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~~ 71 (144)
T 1sjw_A 5 TEIVRRMVSAFNTGRTDDVDEYIHPDYLNPATLEH---GIHTGPKAFAQLVGWVRATFSEEARLEEVRIE 71 (144)
T ss_dssp HHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGGGG---TCCSHHHHHHHHHHHHHHHHCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHHcCcCeEEccCCCC---CCCCCHHHHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 568899999887 4678999999998766554321 01379999988877652 33 5567766543
No 255
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=85.58 E-value=1.7 Score=36.68 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhc-CcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCCC--ccceEEEEEEEEEEeCCCCEEE
Q 037095 18 NAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDY--QNYNVQIFSADAQASYDNGLTV 94 (334)
Q Consensus 18 ~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~~--~~~~~~I~tvD~Q~s~~ggvlI 94 (334)
.+|.-.|-..|.. +...|.+||+.+|.+.-... | ...+|...|.++|.+.-. -...+.|+. .++.|-||
T Consensus 23 qqlA~~Yi~AlT~hDy~~L~~FynrdsVf~D~ta-~--~~YtG~r~Ii~Fl~RaH~gvLey~fnieH-----mfnsGsLV 94 (154)
T 3gzb_A 23 QQLAVKYMDALTEHDYKTLITFYNRDSIFFDKTA-N--RKYTGGRFIIDFLERAHQGVLEYDFNIEH-----MYNAGSLV 94 (154)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTCCTTCEEEETTT-T--EEEESHHHHHHHHHHHTTTCCCCEEEEEE-----EEEETTEE
T ss_pred HHHHHHHHHHHhccCHHHHHHHhCccceeeeecc-C--cceeCcHHHHHHHHHHhhhheeeccChhh-----hccCCcEE
Confidence 3556678888875 89999999999999875432 1 278999999999986431 122333433 34555667
Q ss_pred EEEEEEEeCC
Q 037095 95 LVTGCLIGKD 104 (334)
Q Consensus 95 ~VtG~v~~~d 104 (334)
+..|....++
T Consensus 95 VmiGnY~~kG 104 (154)
T 3gzb_A 95 VMIGNYHFKG 104 (154)
T ss_dssp EEEEEEEEEE
T ss_pred EEEcceeecC
Confidence 7788865543
No 256
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=85.54 E-value=11 Score=30.38 Aligned_cols=62 Identities=6% Similarity=0.048 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhc-CcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC--CccceEEEEEEE
Q 037095 17 GNAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD--YQNYNVQIFSAD 83 (334)
Q Consensus 17 G~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~--~~~~~~~I~tvD 83 (334)
..+.|++||..++. +.+.+..+|.++..+..+.. ...|.++|.+.+..+- +.+.+++|..+-
T Consensus 6 ~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~~~~-----~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~ 70 (152)
T 2gex_A 6 NKERCLEMVAAWNRWDVSGVVAHWAPDVVHYDDED-----KPVSAEEVVRRMNSAVEAFPDLRLDVRSIV 70 (152)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTS-----CEECHHHHHHHHHHHHHHCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCCCeEEeCCCC-----CCCCHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 45778999998874 56799999999987765421 5779999988877542 335577776543
No 257
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=84.84 E-value=0.71 Score=37.02 Aligned_cols=29 Identities=31% Similarity=0.615 Sum_probs=24.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEee
Q 037095 297 HSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQVR 331 (334)
Q Consensus 297 ~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~vR 331 (334)
+-+++ +.|-...-.||..+|+.|| ||.||
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-----gv~I~ 35 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-----NIQIS 35 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-----EEEEE
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-----CEEEE
Confidence 34666 9999999999999999998 67665
No 258
>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28
Probab=84.50 E-value=11 Score=30.64 Aligned_cols=113 Identities=10% Similarity=-0.012 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhc-CcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcC--CCccceEEEEEEEEEEeCCCCEE
Q 037095 17 GNAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL--DYQNYNVQIFSADAQASYDNGLT 93 (334)
Q Consensus 17 G~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL--~~~~~~~~I~tvD~Q~s~~ggvl 93 (334)
-..++..|...++. +.+.+..+|.++..+.+.+. ....|.++|.+.+..+ ++..++|.|..+......++...
T Consensus 13 I~~l~~ry~~~~D~~d~~~~~~lFt~D~~~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~H~~~n~~I~~~gdd~A~ 88 (150)
T 3ef8_A 13 IERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPN----FGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDFVSETEAN 88 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEETT----EEEESHHHHHHHTTTHHHHEEEEEEEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHhcCCCHHHHHhhccCceEEEccCC----CCCCCHHHHHHHHHHhhcccCceEEecCCEEEEEcCCCEEE
Confidence 46789999999994 67899999999998766432 1467999999988765 23345677776655443333222
Q ss_pred EEEEEEE--EeCCCCccee---EEEEEEEEeCCeEEEEccEEEee
Q 037095 94 VLVTGCL--IGKDNVRRKF---TQSFFLAPQDKGYFVLNDILRYV 133 (334)
Q Consensus 94 I~VtG~v--~~~d~~~r~F---sQtF~Lap~~~~Y~V~NDiFR~v 133 (334)
+...-.+ ...++....+ .....|...+++|.|..=.++.-
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~gry~d~~~r~dg~Wri~~r~~~~d 133 (150)
T 3ef8_A 89 VRSVVLAIHRYTKERPDGILYGQYFDTVVKVDGQWKFKRRELRTT 133 (150)
T ss_dssp EEEEEEEEEEESSSSCCEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEEEEccCCCCeEEEEEEEEEEEEEECCEEEEEEEEEEec
Confidence 2222111 1122111111 12334556678899888777543
No 259
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=83.99 E-value=1.5 Score=34.71 Aligned_cols=69 Identities=3% Similarity=0.090 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC-CccceEEEEEE
Q 037095 14 QVVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD-YQNYNVQIFSA 82 (334)
Q Consensus 14 ~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~-~~~~~~~I~tv 82 (334)
.+-..+.|+.||..++ .+.+.|..+|.++..+..++.......+.|.++|...+..+. +.+++++|..+
T Consensus 16 ~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~p~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~i~~~ 86 (129)
T 3fh1_A 16 SEQTAEIMRRFNDVFQLHDPAALPELIAEECVIENTVPAPDGARHAGRQACVQLWSAIATQPGTRFDLEET 86 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEECSCSTTTCCEEESHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHhcCCCEEEECCCCCCCCCcccCHHHHHHHHHHHhcCCCceEEEeEE
Confidence 3456788999999988 577899999999998887641111125689999998887521 23445665443
No 260
>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans}
Probab=83.82 E-value=11 Score=31.00 Aligned_cols=67 Identities=9% Similarity=0.169 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHH-HHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC--CccceEEEEEEE
Q 037095 11 LSPQVVGNAFVEQYYC-ILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD--YQNYNVQIFSAD 83 (334)
Q Consensus 11 ~~a~~VG~~FV~qYY~-~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~--~~~~~~~I~tvD 83 (334)
....+--++.|+.||. .++ .+.+.|..||.++.....++ ...|.+++.+.+..|- +.+.+++|..+=
T Consensus 23 ~~~~~~nk~lV~~f~~~a~~~~D~~~~~~~~a~D~v~h~P~------~~~G~e~~~~~~~~~~~~~pd~~~~i~~ii 93 (148)
T 3g0k_A 23 TAEEQANHDLVIEMYNKVLIAMDSSAVDRYIAPGYVQHSSL------AEPSVEALKGFLDRVRAESPDARQTIHRSF 93 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTTCGGGGGGTEEEEEEECCSS------SCSSHHHHHHHHHHHHHHCCSCEEEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHhcCCHHHHHHhcCcCeEEcCCC------CCCCHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 3455667889999999 676 56789999999885544333 2478988888777552 334566665443
No 261
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=82.89 E-value=15 Score=29.32 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhc-CcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCCCc-cceEEEEEE
Q 037095 16 VGNAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLDYQ-NYNVQIFSA 82 (334)
Q Consensus 16 VG~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~~~-~~~~~I~tv 82 (334)
-..+.|+.||..++. +.+.|..+|.++..+...+. ..+.|.++|.+.+..+.-. .++++|..+
T Consensus 16 ~~~~~v~~f~~a~~~gD~~~l~~l~a~D~v~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~~i~~~ 80 (149)
T 2bng_A 16 EAIRAVEAFLNALQNEDFDTVDAALGDDLVYENVGF----SRIRGGRRTATLLRRMQGRVGFEVKIHRI 80 (149)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETTT----EEEECHHHHHHHHHTTTTTCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEeCCC----CCccCHHHHHHHHHHHHhhcCcEEEEEEE
Confidence 346788999999884 66899999999987764442 2578999999999987522 334444433
No 262
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=82.81 E-value=12 Score=29.33 Aligned_cols=55 Identities=2% Similarity=0.009 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhc-CcchhcccccCCCceeccCCC----CcccccccHHHHHHHHhcCC
Q 037095 17 GNAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQS----GSMTSVTTIKEINDMIVSLD 71 (334)
Q Consensus 17 G~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~~----g~~~~~~G~~~I~~~i~sL~ 71 (334)
....++.||..++. +.+.|..+|.++..+..+... +....+.|+++|.+.+..+-
T Consensus 9 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~v~~~p~~~~~~~~~g~~~~G~~ai~~~~~~~~ 68 (139)
T 2a15_A 9 ALIASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHI 68 (139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEESSSSSBTTBTTSSCEESHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcCCCEEEECCCCCCccCCCCceeecHHHHHHHHHHhc
Confidence 35678999999984 678999999999988654220 00112789999999998763
No 263
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=82.43 E-value=0.87 Score=36.42 Aligned_cols=29 Identities=31% Similarity=0.615 Sum_probs=24.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCceeeceEEee
Q 037095 297 HSIFVGNLPDSATVDQLKLIFEQFGPVKPDGIQVR 331 (334)
Q Consensus 297 ~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~vR 331 (334)
+-+++ +.|-...-.||+++|+.|| ||.||
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fg-----gv~I~ 45 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFG-----NIQIS 45 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTC-----SCCCE
T ss_pred eEEEE-eCChhhhhHHHHHHhhccC-----CEEEE
Confidence 45666 9999999999999999998 55554
No 264
>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*
Probab=82.15 E-value=18 Score=29.29 Aligned_cols=65 Identities=9% Similarity=0.011 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC--Cc-cceEEEEEEE
Q 037095 16 VGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD--YQ-NYNVQIFSAD 83 (334)
Q Consensus 16 VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~--~~-~~~~~I~tvD 83 (334)
-..+.|+.||..++ .+.+.|..||.++..+..++. +. ...|.++|.+.+..+- +. +++++|..+-
T Consensus 12 ~~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~p~~-~~--~~~G~~~~~~~~~~~~~~~p~d~~~~i~~~~ 80 (153)
T 2f99_A 12 EQIAAVRRMVEAYNTGKTDDVADYIHPEYMNPGTLE-FT--SLRGPELFAINVAWVKKTFSEEARLEEVGIE 80 (153)
T ss_dssp HHHHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGTT-TC--CCCHHHHHHHHHHHHHHHHCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHhcCCCeEEecCCC-CC--CCCCHHHHHHHHHHHHHHCCCCcEEEEEEEE
Confidence 34677899999887 467899999999877655543 11 2479999988877652 33 5567766543
No 265
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=82.07 E-value=19 Score=29.21 Aligned_cols=61 Identities=5% Similarity=0.084 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhc-CcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC--CccceEEEEEEE
Q 037095 17 GNAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD--YQNYNVQIFSAD 83 (334)
Q Consensus 17 G~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~--~~~~~~~I~tvD 83 (334)
..+.|+.||..++. +.+.+..+|.++..+..++ ...|.++|.+.+..+- +.+++++|..+-
T Consensus 6 ~~~~v~~~~~a~~~~D~~~~~~~~a~D~v~~~p~------~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~ 69 (158)
T 2gey_A 6 RKALCLEMVAAWNRWDLSGIIKHWSPDIVHYSED------NEVSSADMVKLMEGGLKAFPDLQLEVKSIM 69 (158)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHTTEEEEEEEEETT------EEECHHHHHHHHHHHHHHSTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCCeEEeCCC------CCCCHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 46788999998884 6789999999998776643 4689999988877542 335677776543
No 266
>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11
Probab=81.96 E-value=12 Score=30.32 Aligned_cols=68 Identities=9% Similarity=0.126 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhc-CcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC--C-ccceEEEEEE
Q 037095 15 VVGNAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD--Y-QNYNVQIFSA 82 (334)
Q Consensus 15 ~VG~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~--~-~~~~~~I~tv 82 (334)
.-..+.|++||..++. +.+.|..+|.++..+..++.......+.|.++|.+.+..+. + ...+++|..+
T Consensus 29 ~~~~~~v~~~~~a~~~gD~~~l~~l~a~D~~~~~~~~~~~~g~~~G~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (156)
T 1tuh_A 29 EQNAETVRRGYAAFNSGDMKTLTELFDENASWHTPGRSRIAGDHKGREAIFAQFGRYGGETGGTFKAVLLHV 100 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHHHHHTTTTCCEEEEEEE
T ss_pred chHHHHHHHHHHHHhCCCHHHHHHhcCCCEEEEccCCCCccceEcCHHHHHHHHHHHHhhcCCceEEEEEEE
Confidence 3457789999999884 67899999999987776653111124689999988887652 1 1345555543
No 267
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=80.43 E-value=11 Score=31.04 Aligned_cols=112 Identities=7% Similarity=0.010 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHh-cCcchhcccccCCCce-ec--cCCCCcccccccHHHHHHHHhcCCCccceEEEEEEEEEEeCCCCEE
Q 037095 18 NAFVEQYYCILH-QNPDVVHRFYQESSMV-SR--PDQSGSMTSVTTIKEINDMIVSLDYQNYNVQIFSADAQASYDNGLT 93 (334)
Q Consensus 18 ~~FV~qYY~~L~-~~p~~L~~fY~~~S~l-~~--~g~~g~~~~~~G~~~I~~~i~sL~~~~~~~~I~tvD~Q~s~~ggvl 93 (334)
..++++|...+. .+-+.+.++|+++-++ .+ .|. .+.|++.+...+.....+...+++.....+...++..+
T Consensus 15 ~~~~~~~~~Ai~~gD~~~~~~l~~~dv~~Fd~~~~g~-----~~~g~~~~r~~f~~~~~~~~~~~~~~~~V~~~g~d~Av 89 (143)
T 2f86_B 15 VRVTQTLLDAISCKDFETYTRLCDTSMTCFEPEALGN-----LIEGIEFHRFYFDGNRKNQVHTTMLNPNVHIIGEDAAC 89 (143)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTC-----CEETTHHHHTTSSSCSCCSCEEEEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCCCEEEEccCcCCc-----cccCHHHHHHHHhcccCCcceeEEEcceEEEeCCCEEE
Confidence 467888888877 6788999999987655 33 233 57799888755433222345677777777766534333
Q ss_pred EE---EEEEEEeCCC-CcceeEEEEEEEEeCCeEEEEccEEEeec
Q 037095 94 VL---VTGCLIGKDN-VRRKFTQSFFLAPQDKGYFVLNDILRYVD 134 (334)
Q Consensus 94 I~---VtG~v~~~d~-~~r~FsQtF~Lap~~~~Y~V~NDiFR~vd 134 (334)
+. .++....++. ....+--|.++...+++|.|...-...+.
T Consensus 90 ~~y~~~~~~~~~~G~~~~~~~r~T~V~~k~~g~WkivH~H~S~~~ 134 (143)
T 2f86_B 90 VAYVKLTQFLDRNGEAHTRQSQESRVWSKKQGRWVCVHVHRSTQP 134 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEC--
T ss_pred EEEEeeeeeccCCCCeeeEEEEEEEEEEEeCCcEEEEEEeECCCC
Confidence 33 2222222232 23457788888899999999887766543
No 268
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=79.85 E-value=12 Score=30.70 Aligned_cols=98 Identities=9% Similarity=0.125 Sum_probs=66.5
Q ss_pred hcCcchhcccccCCCceecc-CCCCcccccccHHHHHHHHhcCCC-ccceEEEEEEEEEEeCCCCEEEEEEEEEEe-CCC
Q 037095 29 HQNPDVVHRFYQESSMVSRP-DQSGSMTSVTTIKEINDMIVSLDY-QNYNVQIFSADAQASYDNGLTVLVTGCLIG-KDN 105 (334)
Q Consensus 29 ~~~p~~L~~fY~~~S~l~~~-g~~g~~~~~~G~~~I~~~i~sL~~-~~~~~~I~tvD~Q~s~~ggvlI~VtG~v~~-~d~ 105 (334)
..+.+.+..+|+++.++--+ +. ..+.|.++|..++..+.- ..++++|.....|-..+-+++- ..+.. .++
T Consensus 29 ~gD~~~~~~lyapDvt~fDp~~~----~~~~G~~a~r~yf~~~~~~~~~~~ei~~p~V~v~gD~A~~~---y~l~~~~~~ 101 (134)
T 3ke7_A 29 STDPMAFVELSDTDVIYFDPSLE----TKIEGLEQLRTYYKGMQLPPADHFDMIRPVVQVAQNIAVLT---FNLDSYLSD 101 (134)
T ss_dssp CSCTTHHHHHEEEEEEEECTTCS----SCEESHHHHHHHHHHHCCCCCSEEEEEEEEEEEETTEEEEE---EEEEEEETT
T ss_pred CCCHHHHHHhcCCCEEEEcCCCc----cccCCHHHHHHHHHhcccCCcceEEEeCCeEEEeCceEEEE---EEEEEeeCC
Confidence 36889999999988765322 22 157899999999987542 2367888887777754444432 11211 122
Q ss_pred CcceeEEEEEEEEe-CCeEEEEccEEEee
Q 037095 106 VRRKFTQSFFLAPQ-DKGYFVLNDILRYV 133 (334)
Q Consensus 106 ~~r~FsQtF~Lap~-~~~Y~V~NDiFR~v 133 (334)
.....-.|+++... +++|.|...-..++
T Consensus 102 ~~~~~r~T~V~~r~~dG~W~ivH~H~S~~ 130 (134)
T 3ke7_A 102 KVIKWNCTEVYRRNPDNQWKIIQTHWSYV 130 (134)
T ss_dssp EEEEEEEEEEEEECTTSBEEEEEEEEEES
T ss_pred CcEEEEEEEEEEEcCCCcEEEEEEeeccc
Confidence 24567789999999 88999998877765
No 269
>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}
Probab=78.76 E-value=13 Score=29.96 Aligned_cols=54 Identities=6% Similarity=0.117 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcC
Q 037095 17 GNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL 70 (334)
Q Consensus 17 G~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL 70 (334)
-.+.|+.||..+. .+.+.|..+|.++..+..++.........|.++|.+.+..+
T Consensus 22 n~~~v~~~~~a~~~gD~~~l~~l~a~D~v~~~p~~~~~~g~~~G~~~v~~~~~~~ 76 (148)
T 3g8z_A 22 TIDIAKSYITAIQTGDHATLGSIISPDVIWHQPGNHQFSGTHRGMAVVGPMLGKM 76 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEcCCCCCCCceEcCHHHHHHHHHHH
Confidence 4567888888887 46789999999999888776421122468999999887754
No 270
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}
Probab=77.81 E-value=24 Score=27.88 Aligned_cols=65 Identities=8% Similarity=0.128 Sum_probs=44.2
Q ss_pred HHHHHHHHH-HHh-cCcchhcccccCCCc-eeccCCCCcccccccHHHHHHHHhcCC--CccceEEEEEEE
Q 037095 18 NAFVEQYYC-ILH-QNPDVVHRFYQESSM-VSRPDQSGSMTSVTTIKEINDMIVSLD--YQNYNVQIFSAD 83 (334)
Q Consensus 18 ~~FV~qYY~-~L~-~~p~~L~~fY~~~S~-l~~~g~~g~~~~~~G~~~I~~~i~sL~--~~~~~~~I~tvD 83 (334)
++.|++||. .++ .+.+.+..||.++.. ...++. .......|.++|.+.+..+- |.+++++|..+-
T Consensus 9 ~~~v~~~~~~~~~~~d~~~~~~~~a~d~~~~~~p~~-~~~g~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~ 78 (146)
T 3f9s_A 9 KEILTQFTREVWSEGNIEASDKYIAPKYTVLHDPGD-PWEGRELDVAGYKERVKTLRAAFPDQCFDIQGLF 78 (146)
T ss_dssp HHHHHHHHHHHTTTCCGGGHHHHEEEEEEEEECTTC-TTTTCEECHHHHHHHHHHHHHHSTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCCeeeccCCCC-CCCCCcCCHHHHHHHHHHHHhhCCCcEEEEEEEE
Confidence 567888996 665 577899999999988 444431 01124679999988877552 445677776553
No 271
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.98 E-value=1.6 Score=34.27 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=26.9
Q ss_pred cceEEEeCCC----CCCCH----HHHHHHhhcCCceeeceEE
Q 037095 296 GHSIFVGNLP----DSATV----DQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 296 ~~~iyV~nLp----~~~t~----~~l~~~F~~fG~v~~~~i~ 329 (334)
+.+|+|.-++ .+.-+ .+|.+.|++||.|...+|+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~ 48 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFV 48 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEe
Confidence 4588888877 34444 7899999999999988875
No 272
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=76.52 E-value=1.2 Score=35.88 Aligned_cols=20 Identities=15% Similarity=-0.006 Sum_probs=16.8
Q ss_pred CHHHHHHHhhcCCceeeceE
Q 037095 309 TVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 309 t~~~l~~~F~~fG~v~~~~i 328 (334)
-++||+++|++||.|....|
T Consensus 30 l~edl~~~f~kfG~V~~v~i 49 (114)
T 3s6e_A 30 IKDDVIEECNKHGGVIHIYV 49 (114)
T ss_dssp HHHHHHHHHTTTTCCSEEEE
T ss_pred HHHHHHHHHhccCCEEEEEE
Confidence 35689999999999987655
No 273
>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}
Probab=76.26 E-value=23 Score=27.42 Aligned_cols=58 Identities=17% Similarity=0.116 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcC--CCccceEEEEEEE
Q 037095 18 NAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL--DYQNYNVQIFSAD 83 (334)
Q Consensus 18 ~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL--~~~~~~~~I~tvD 83 (334)
++.|+.||..++ .+.+.|..||+++..+ .| ...|.+++.+.+..+ .+.+++++|..+-
T Consensus 6 ~~~v~~~~~~~~~~d~~~~~~~~a~d~~~--~~------~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~ 66 (128)
T 3ehc_A 6 NDIYLAYLDSLNHQAFDELGTFVDDNVEH--NG------RPFGLSGYRDMLVKDFADIPDLRFEAEILV 66 (128)
T ss_dssp HHHHHHHHHHHHTTCGGGGGGTEEEEEEE--TT------BCCHHHHHHHHHHHHHHHCTTCCCCEEEEE
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCcceEe--CC------CCCCHHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 567899999888 4668999999998755 23 357888888777654 1335566665543
No 274
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0
Probab=75.29 E-value=5.7 Score=31.04 Aligned_cols=54 Identities=6% Similarity=0.054 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhc-CcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcC
Q 037095 17 GNAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL 70 (334)
Q Consensus 17 G~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL 70 (334)
-.+.|+.||..+.. +.+.|..+|.++..+..++.........|.++|.+.+..+
T Consensus 7 ~~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~p~~~p~~g~~~G~~~i~~~~~~~ 61 (135)
T 3fgy_A 7 NVQIVKDFFAAMGRGDKKGLLAVSAEDIEWIIPGEWPLAGTHRGHAALAALLQKA 61 (135)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEECSSSTTCEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCeEEEEcCCCccceEEeCHHHHHHHHHHH
Confidence 35678899998884 6789999999998887765211123568999998888766
No 275
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=73.82 E-value=15 Score=28.07 Aligned_cols=52 Identities=10% Similarity=0.206 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhc-CcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcC
Q 037095 16 VGNAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL 70 (334)
Q Consensus 16 VG~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL 70 (334)
--...++.||..++. +.+.|..+|.++..+..++. + ..+.|.++|.+.+..+
T Consensus 8 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~-~--~~~~G~~~i~~~~~~~ 60 (131)
T 1oh0_A 8 EVQGLMARYIELVDVGDIEAIVQMYADDATVEDPFG-Q--PPIHGREQIAAFYRQG 60 (131)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEESSTT-S--CCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCCEEEEcCCC-C--CCcccHHHHHHHHHHH
Confidence 346789999999985 67899999999998877632 1 2688999999988866
No 276
>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0
Probab=73.57 E-value=7.8 Score=30.25 Aligned_cols=82 Identities=10% Similarity=0.130 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhc-CcchhcccccCCCceeccCCCCcccccccHHHHHH-HHhcCC--CccceEEEEEEEEEEeCCCCEE
Q 037095 18 NAFVEQYYCILHQ-NPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEIND-MIVSLD--YQNYNVQIFSADAQASYDNGLT 93 (334)
Q Consensus 18 ~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~-~i~sL~--~~~~~~~I~tvD~Q~s~~ggvl 93 (334)
.+.|+.||..|.. +.+.|..+|+++..+..++..-......|.++|.+ .+..|. +.++++++..+ +...+|. .
T Consensus 7 ~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~~p~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gd-~ 83 (134)
T 3grd_A 7 LEIIRSTYEGSASSNAKHLAEALSEKVEWTEAEGFPYGGTYIGVEAIMENVFSRLGSEWNDYKASVNMY--HEVSGKD-V 83 (134)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHEEEEEEEEECTTSTTCEEEESHHHHHHHTHHHHHHHEEEEEEEEEEE--EEBTTSS-E
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCCCeEEEecCCcccCcEEeCHHHHHHHHHHHHHhhccccccchhhe--eeecCCC-E
Confidence 4568888888774 56899999999998776642111135789999974 555542 23334444433 2233333 3
Q ss_pred EEEEEEEEe
Q 037095 94 VLVTGCLIG 102 (334)
Q Consensus 94 I~VtG~v~~ 102 (334)
|.|.|.+..
T Consensus 84 v~v~~~~~~ 92 (134)
T 3grd_A 84 IIAEGMYSG 92 (134)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEee
Confidence 445555543
No 277
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}
Probab=73.37 E-value=20 Score=28.45 Aligned_cols=63 Identities=11% Similarity=0.003 Sum_probs=45.1
Q ss_pred HHHHHHHHHH-HHhc-C--cchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC--CccceEEEEEEE
Q 037095 17 GNAFVEQYYC-ILHQ-N--PDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD--YQNYNVQIFSAD 83 (334)
Q Consensus 17 G~~FV~qYY~-~L~~-~--p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~--~~~~~~~I~tvD 83 (334)
-++.|+.||. .++. + .+.|..||+++..+..+.. ....|.++|.+.+..+- |.+++++|..+=
T Consensus 11 n~~~v~~~~~~~~~~~d~~~~~~~~~~a~d~~~~~~~~----~~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~ 79 (146)
T 3kkg_A 11 NVETVLRLFDEGWGAQDGWRDVWRETMTPGFRSIFHSN----QAVEGIEQAIAFNAVLFEGFPRLEVVVENVT 79 (146)
T ss_dssp HHHHHHGGGTTTSTTSTTHHHHHHHHEEEEEEEEETTS----CCEESHHHHHHHHHHHHHHSTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHcCCCeEEecCCC----CCCCCHHHHHHHHHHHHHhCCCceeEEEEEE
Confidence 4678999999 7764 5 6799999999987774432 25789999888777542 345677776543
No 278
>3ejv_A Uncharacterized protein with cystatin-like fold; structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.40A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.28
Probab=71.09 E-value=47 Score=28.06 Aligned_cols=75 Identities=9% Similarity=0.077 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHHHh-cCcchhcccccCCCceecc---C-CCCcccccccHHHHHHHHhcCC-----CccceEEEEE
Q 037095 12 SPQVVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRP---D-QSGSMTSVTTIKEINDMIVSLD-----YQNYNVQIFS 81 (334)
Q Consensus 12 ~a~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~---g-~~g~~~~~~G~~~I~~~i~sL~-----~~~~~~~I~t 81 (334)
....--..++..|...++ .+.+.+..+|.++..+.+. | ..|....+.|.++|.+.+...- +..+.|.+..
T Consensus 23 ~d~~~I~~l~~~y~~~~D~~d~d~~~~lFt~D~~~~~~~~~Gg~~g~~~~~~Gr~aI~~~~~~~~~~~~~~~~t~H~~~n 102 (179)
T 3ejv_A 23 ADETIILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGASRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNVVNA 102 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEEEECGGGCCEEEEEEESHHHHHHHHHHSSCCCCTTEEEEEEEEE
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHhhcCCceEEEEeccCCCcCCCcceecCHHHHHHHHHHhhcccccccceEEEcCC
Confidence 334455778999999999 5678999999999987654 2 1223346889999999987542 3345677766
Q ss_pred EEEEE
Q 037095 82 ADAQA 86 (334)
Q Consensus 82 vD~Q~ 86 (334)
.....
T Consensus 103 ~~I~v 107 (179)
T 3ejv_A 103 PIIVI 107 (179)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 55543
No 279
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=70.44 E-value=8.6 Score=30.10 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC
Q 037095 18 NAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD 71 (334)
Q Consensus 18 ~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~ 71 (334)
+..|+.||..++ .+.+.|..++.++..+..++. ...|.+++...+..+-
T Consensus 9 ~~~v~~f~~A~~~gD~~~l~~lla~Dvv~~~~~g-----~~~G~~~v~~~~~~~~ 58 (114)
T 3f40_A 9 RDLVLEFIHALNTENFPAAKKRLNENFTFNGPMG-----HREGSERYMNDMEKMK 58 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEEETTE-----EEESHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCCC-----cccCHHHHHHHHHHHH
Confidence 456777888888 567899999999988776653 5789999999988764
No 280
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=65.65 E-value=1.3 Score=34.88 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=0.0
Q ss_pred cceEEEeCCCCCCCHHH
Q 037095 296 GHSIFVGNLPDSATVDQ 312 (334)
Q Consensus 296 ~~~iyV~nLp~~~t~~~ 312 (334)
..+|||+|||.++|++.
T Consensus 97 ~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 97 FTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -----------------
T ss_pred CCceEeCCCCCCccccc
Confidence 45799999999999874
No 281
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=64.66 E-value=4.8 Score=33.00 Aligned_cols=52 Identities=6% Similarity=0.144 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcC
Q 037095 16 VGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL 70 (334)
Q Consensus 16 VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL 70 (334)
....+++.||..+. .+.+.|..+|.++..+.-+-. ...+.|.++|...|..+
T Consensus 10 ~~~~~~~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~---~~~~~G~~~v~~~~~~~ 62 (143)
T 3mso_A 10 NAAATLAEWHGLIARRDLSGLPRLLHPDAVFRSPMA---HKPYAGAPVVSMILNTV 62 (143)
T ss_dssp HHHHHHHHHHHHHHTTCCTTGGGGEEEEEEEECSSC---SSCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC---CCCccCHHHHHHHHHHH
Confidence 45778999999988 567899999999999886531 12688999999998865
No 282
>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP}
Probab=64.17 E-value=50 Score=26.65 Aligned_cols=48 Identities=6% Similarity=0.099 Sum_probs=37.0
Q ss_pred HHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcC
Q 037095 19 AFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL 70 (334)
Q Consensus 19 ~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL 70 (334)
+.|+.||..++ .+.+.|..+|.++........ ....|.++|.+.+..+
T Consensus 22 ~~v~~~~~a~n~~D~~~l~~l~a~D~v~~~~~~----~~~~G~e~i~~~~~~~ 70 (150)
T 3f8h_A 22 DTIARYFDAFNAGDTDGMLACLSEDVAHHVNEG----NIRVGKEKFAAFCAHM 70 (150)
T ss_dssp CHHHHHHHHHHHTCHHHHHTTEEEEEEEEEETT----EEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHcCCCeEEeCCCC----cceeCHHHHHHHHHHH
Confidence 46889999998 577899999999998433221 1578999999988855
No 283
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=63.94 E-value=4.7 Score=31.42 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=24.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCce
Q 037095 297 HSIFVGNLPDSATVDQLKLIFEQFGPV 323 (334)
Q Consensus 297 ~~iyV~nLp~~~t~~~l~~~F~~fG~v 323 (334)
++|-||+||.+.|++++.+..+.++.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~ 28 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEH 28 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccc
Confidence 478899999999999999999988754
No 284
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=61.39 E-value=50 Score=30.02 Aligned_cols=56 Identities=7% Similarity=0.042 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC
Q 037095 13 PQVVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD 71 (334)
Q Consensus 13 a~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~ 71 (334)
..+-.++.|+.||..|+ .+.+.|..+|.++..+..+-. .....|+++|.+.+..+-
T Consensus 136 ~~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~---~~~~~G~~ai~~~~~~~~ 192 (283)
T 3rga_A 136 DEERRKELAREHCLRINDGDVDGLLKLYSPRIRFEDPVG---SWTRTGLEALRAHATMAV 192 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEESSTT---SCEEESHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCCC---CCcccCHHHHHHHHHHhh
Confidence 45567889999999998 578899999999999887631 125789999999998763
No 285
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.58 E-value=3.2 Score=32.83 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=27.1
Q ss_pred CcceEEEeCCCCC-----CCH----HHHHHHhhcCCceeeceEE
Q 037095 295 KGHSIFVGNLPDS-----ATV----DQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 295 ~~~~iyV~nLp~~-----~t~----~~l~~~F~~fG~v~~~~i~ 329 (334)
...+|+|.-++.+ .-+ .+|.+.|++||.|...+|+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v 57 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRIN 57 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 3568999999754 323 5699999999999988764
No 286
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=58.41 E-value=22 Score=32.50 Aligned_cols=52 Identities=10% Similarity=0.125 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcC
Q 037095 16 VGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL 70 (334)
Q Consensus 16 VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL 70 (334)
-.+++|+.||..++ .+.+.|..+|.++..+..+-. .....|+++|...|..+
T Consensus 7 ~~~~~v~~~~~~~~~~D~~~l~~l~a~Dav~~~P~~---~~~~~Gr~ai~~~~~~~ 59 (283)
T 3rga_A 7 VRKEVALEYCRRVNAGELEGVLQLFAPDARLVDPLG---TEPVVGRAALAARLAPA 59 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECSSS---SCCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC---CCCcCcHHHHHHHHHHH
Confidence 35678999999998 578899999999999887621 12578999999999865
No 287
>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}
Probab=56.61 E-value=9.3 Score=32.43 Aligned_cols=58 Identities=7% Similarity=0.011 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC
Q 037095 13 PQVVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD 71 (334)
Q Consensus 13 a~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~ 71 (334)
..+.-.+.|++||..++ .+.+.|..|+.++..+..+... -.....|+++|.+.+..+.
T Consensus 8 s~~~~~~~v~ry~~A~n~gD~d~l~~l~aeD~v~~~p~~~-p~~~~~Greai~~~f~~~~ 66 (156)
T 3g16_A 8 SRAAMEKVIRTYYDGCNEADEAKMIACFVPEAVHYFPAGM-YGGAFRGAAQIAHRWRTAV 66 (156)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECBTTS-TTSCEESHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEecCCCC-CCCCccCHHHHHHHHHHHH
Confidence 35678899999999998 4678999999999988765410 0125779999999998653
No 288
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.06 E-value=11 Score=30.23 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=23.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhc
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQ 319 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~ 319 (334)
-+++|.|.|||-++.++.|+-.|++
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn 31 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFEN 31 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHC
T ss_pred CccEEEEECCCCCCChhHheEEEeC
Confidence 3689999999999999999999987
No 289
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=53.30 E-value=71 Score=24.17 Aligned_cols=61 Identities=8% Similarity=0.077 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhc-CcchhcccccCCCceec-cCCCCcccccccHHHHHHHHhcC-CCccceEEEEEE
Q 037095 18 NAFVEQYYCILHQ-NPDVVHRFYQESSMVSR-PDQSGSMTSVTTIKEINDMIVSL-DYQNYNVQIFSA 82 (334)
Q Consensus 18 ~~FV~qYY~~L~~-~p~~L~~fY~~~S~l~~-~g~~g~~~~~~G~~~I~~~i~sL-~~~~~~~~I~tv 82 (334)
...|+.||..++. +.+.+..+|.++..+.. +|. ....|.++|.+.+..+ ...+.++++..+
T Consensus 6 ~~~v~~~~~a~n~~D~~~~~~~~a~D~~~~~~~g~----~~~~G~~ai~~~~~~~~~~~~~~~~~~~~ 69 (123)
T 2k54_A 6 ELPVQKQLEAYNARDIDAFMAWWADDCQYYAFPAT----LLAGNAAEIRVRHIERFKEPDLYGELLTR 69 (123)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTEEEEEEEEETTTE----EEEESHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCHHHHHhhcCCceEEEcCCCC----cccCCHHHHHHHHHHHcCCCCcEEEEEEE
Confidence 5678999999984 66899999999987654 331 1467999999988754 212344554443
No 290
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=48.01 E-value=6.8 Score=39.15 Aligned_cols=30 Identities=17% Similarity=0.511 Sum_probs=24.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCceeec
Q 037095 296 GHSIFVGNLPDSATVDQLKLIFEQFGPVKPD 326 (334)
Q Consensus 296 ~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~ 326 (334)
-.||||. .|...++.+|.+.|++||+|.+.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~ 82 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNH 82 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCE
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceE
Confidence 4799997 79999999999999999999864
No 291
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus}
Probab=46.22 E-value=27 Score=33.95 Aligned_cols=79 Identities=11% Similarity=0.162 Sum_probs=49.7
Q ss_pred HHHHHHHHHHH---------HHHHHhcCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcCC------------
Q 037095 13 PQVVGNAFVEQ---------YYCILHQNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSLD------------ 71 (334)
Q Consensus 13 a~~VG~~FV~q---------YY~~L~~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL~------------ 71 (334)
.-.-|++|++. |...|-.+++.+.+||.+.+.|...+. ...|...|..|+
T Consensus 174 ~~GrgRAWiRlaLne~~L~~yL~~ll~~~~~l~~~Y~~~A~L~~~Ee---------~~~il~~L~gLn~vDf~~f~~~~T 244 (384)
T 3cwz_B 174 DVGKARAWVRLSMEKKLLSRHLKQLLSDHELTKKLYKRYAFLRCDDE---------KEQFLYHLLSFNAVDYFCFTNVFT 244 (384)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTCHHHHHHHBCTTSTTTCHHH---------HHHHHHHHGGGGSSCCCTTTTTCT
T ss_pred CCcchhHHHHHHHhcchHHHHHHHHHhCchhhhhhcccchhhcCcch---------hhhhhhhcccccccchhhcccccc
Confidence 34568889774 999999999999999999998874432 334444444432
Q ss_pred CccceEEEEEEEEEEe----CCCCEEEEEEEEE
Q 037095 72 YQNYNVQIFSADAQAS----YDNGLTVLVTGCL 100 (334)
Q Consensus 72 ~~~~~~~I~tvD~Q~s----~~ggvlI~VtG~v 100 (334)
.+.+.+.|.-...--. .+..|.|.+.|.-
T Consensus 245 tt~~~Y~V~V~TG~~~gaAGT~anV~I~L~G~~ 277 (384)
T 3cwz_B 245 TILIPYHILIVPSKKLGGSMFTANPWICISGEL 277 (384)
T ss_dssp TSEEEEEEEEEECCCCCSCCCCSCEEEEEEESS
T ss_pred ccceeEEEEEEeCCCCCCCCCCCcEEEEEEeCC
Confidence 1223444443332222 2345889998863
No 292
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=44.86 E-value=11 Score=32.58 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=18.6
Q ss_pred CHHHHHHHhhcCCceeeceEE
Q 037095 309 TVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 309 t~~~l~~~F~~fG~v~~~~i~ 329 (334)
.+++|+++|++||.|....|.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~ 162 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIY 162 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHHHccCCeEEEEEe
Confidence 568999999999999998874
No 293
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}
Probab=40.72 E-value=25 Score=29.14 Aligned_cols=55 Identities=9% Similarity=0.171 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhcC
Q 037095 13 PQVVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL 70 (334)
Q Consensus 13 a~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL 70 (334)
.......+++.|+..+. .+.+.|..+|.++..+.-+-. ...+.|.+.|...|..+
T Consensus 18 ~~~~~~~~l~~f~~a~~~gD~~aL~~LlA~Dvv~~~P~~---~~~~~G~~av~~~~~~~ 73 (148)
T 3f8x_A 18 PNAAVQSGLQEWHRIIAEADWERLPDLLAEDVVFSNPST---FDPYHGKGPLMVILPAV 73 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTCGGGSGGGEEEEEEEECSSC---SSCEESHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHhCCCEEEECCCC---CCCcCCHHHHHHHHHHH
Confidence 34677889999999988 467899999999998876532 12678999999998765
No 294
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=35.42 E-value=16 Score=28.83 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=21.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcC
Q 037095 295 KGHSIFVGNLPDSATVDQLKLIFEQF 320 (334)
Q Consensus 295 ~~~~iyV~nLp~~~t~~~l~~~F~~f 320 (334)
.+.+|-||+||.+.|++++.+.++.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~ 33 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPL 33 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCc
Confidence 35689999999999999988776654
No 295
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=27.64 E-value=8.4 Score=29.60 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.2
Q ss_pred eCCCCCCCHHHHHHHhhcCCc
Q 037095 302 GNLPDSATVDQLKLIFEQFGP 322 (334)
Q Consensus 302 ~nLp~~~t~~~l~~~F~~fG~ 322 (334)
++++...++++|+++|++||-
T Consensus 89 ~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 89 QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhHhHHHHHHHHHHhCC
Confidence 677888899999999999985
No 296
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.50 E-value=24 Score=28.24 Aligned_cols=29 Identities=7% Similarity=0.198 Sum_probs=22.8
Q ss_pred ceEEEeCCCCCC-CH----HHHHHHhhcCCceee
Q 037095 297 HSIFVGNLPDSA-TV----DQLKLIFEQFGPVKP 325 (334)
Q Consensus 297 ~~iyV~nLp~~~-t~----~~l~~~F~~fG~v~~ 325 (334)
.+|+|.||+.++ .. +.++++|.+|+++..
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~t 39 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTT 39 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcc
Confidence 589999998765 32 577999999997653
No 297
>4giw_A RUN and SH3 domain-containing protein 1; NGF-TRKA signaling pathway, NF-KB pathway, signaling protein; 2.00A {Homo sapiens}
Probab=27.38 E-value=27 Score=30.48 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=38.1
Q ss_pred CHHHHHHHHHH---------HHHHHHhcCcchhcccccCCCceec-cCCCCcccccccHHHHHHH---HhcCCCc
Q 037095 12 SPQVVGNAFVE---------QYYCILHQNPDVVHRFYQESSMVSR-PDQSGSMTSVTTIKEINDM---IVSLDYQ 73 (334)
Q Consensus 12 ~a~~VG~~FV~---------qYY~~L~~~p~~L~~fY~~~S~l~~-~g~~g~~~~~~G~~~I~~~---i~sL~~~ 73 (334)
+...=+++||. .|...|..+++.|.+||.+.|.|.. .+. .-.+.+.|... |..++|.
T Consensus 115 t~~gr~RA~ir~aLn~~~L~~~l~~l~~~~~~l~~~Y~~~a~lr~s~~~-----~~~l~~~l~~~L~~L~~l~F~ 184 (198)
T 4giw_A 115 SSRSRFHAFILGLLNTKQLELWFSSLQEDAGLLSLMYMPTGFFSLARGG-----CPSLSTELLLLLQPLSVLTFH 184 (198)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHHHHBCTTSHHHHTSSB-----TTBHHHHHHHHHGGGGGSCCB
T ss_pred CcchHHHHHHHHHHHHCHHHHHHHHHHhChHHHHHHcCCchHhhccccc-----ChHHHHhhhccccccccccee
Confidence 34445566664 5899999999999999999998853 221 12345555554 5566664
No 298
>3ub1_A ORF13-like protein; NTF2-like, transport protein; HET: MSE; 1.80A {Clostridium perfringens}
Probab=27.37 E-value=3.5e+02 Score=24.55 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHh-cCcchhcccccCCCce
Q 037095 14 QVVGNAFVEQYYCILH-QNPDVVHRFYQESSMV 45 (334)
Q Consensus 14 ~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l 45 (334)
..=...|+..||..+- .+...|..|..+.+.+
T Consensus 154 ~~~i~~FL~tFFk~Y~sa~~~eL~yy~~~~~~l 186 (261)
T 3ub1_A 154 TKKITDSVSQFFKAYYEQNQTQIDYFLVDGADI 186 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHTTBCTTCCC
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHhcCCCcc
Confidence 3456799999999997 4667777777676654
No 299
>4gb5_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, snoal-like domain, unknown function; HET: PGE; 1.55A {Kribbella flavida}
Probab=27.32 E-value=2e+02 Score=22.77 Aligned_cols=68 Identities=7% Similarity=0.067 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCc-chh-cccccCCCceeccCCCCcccccccHHHHHHHHhcC--CCccceEEEEEEEEE
Q 037095 18 NAFVEQYYCILHQNP-DVV-HRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVSL--DYQNYNVQIFSADAQ 85 (334)
Q Consensus 18 ~~FV~qYY~~L~~~p-~~L-~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~sL--~~~~~~~~I~tvD~Q 85 (334)
...+..|-..+|... +.| ..||.+++.+.+.+..|......|.++|...+... ++..++|-|......
T Consensus 14 ~~L~~rY~~~~D~~d~~~l~~~~ft~Da~~d~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~t~H~~~n~~I~ 85 (159)
T 4gb5_A 14 IELFGRYADIADLKEFTDLPRRVHTDPLTIDFESVTGMPPMTVPLSDYGAALRASFGAFSATHHAITGHVVT 85 (159)
T ss_dssp HHHHHHHHHHHHTTCCSSHHHHHEEEEEEEECHHHHCCCCEEECHHHHHHHHHHHHTTCSEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHhhCcCCEEEEecCCCCCcccccHHHHHHHHHHHhccCCceEEEecCCceEE
Confidence 456889999999654 555 57999999876542212223567889988877642 233446766655444
No 300
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=26.27 E-value=61 Score=27.72 Aligned_cols=54 Identities=7% Similarity=-0.020 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHHHHhc
Q 037095 11 LSPQVVGNAFVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEINDMIVS 69 (334)
Q Consensus 11 ~~a~~VG~~FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~~i~s 69 (334)
|--.+-|..=|+-=-..-+ .+|+.|..-|..+|.-.-.+. .++|.++|..+|..
T Consensus 13 PFt~EtA~~KVr~AEDaWNsrdP~rValAYT~Ds~WRNR~e-----F~~GR~eI~~FLtr 67 (166)
T 2imj_A 13 PFTRESAIEKIRLAEDGWNSRDPERVSLAYTLDTQWRNRAE-----FAHNREEAKAFLTR 67 (166)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCHHHHHTTEEEEEEEEETTE-----EECSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhcccChHHHhhccCCCCceecccc-----ccCcHHHHHHHHHH
Confidence 3334445555665556655 689999999999987654444 78999999999875
No 301
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=23.04 E-value=59 Score=29.55 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=26.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCceeeceE
Q 037095 296 GHSIFVGNLPDSATVDQLKLIFEQFGPVKPDGI 328 (334)
Q Consensus 296 ~~~iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i 328 (334)
...+.|+||||+++..-|..++.. +.+...-+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 356899999999999999999987 66665444
No 302
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=20.61 E-value=28 Score=31.33 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=25.3
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCceeeceEE
Q 037095 299 IFVGNLPDSATVDQLKLIFEQFGPVKPDGIQ 329 (334)
Q Consensus 299 iyV~nLp~~~t~~~l~~~F~~fG~v~~~~i~ 329 (334)
.-|+||||+++..-|..++...+.+...-+-
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 3899999999999999999877776655443
No 303
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=20.19 E-value=46 Score=31.73 Aligned_cols=22 Identities=9% Similarity=0.064 Sum_probs=19.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhc
Q 037095 298 SIFVGNLPDSATVDQLKLIFEQ 319 (334)
Q Consensus 298 ~iyV~nLp~~~t~~~l~~~F~~ 319 (334)
-..|+||||+++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988888874
No 304
>3lyg_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE GOL; 1.61A {Colwellia psychrerythraea}
Probab=20.15 E-value=3.5e+02 Score=21.93 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=37.9
Q ss_pred HHHHHHHHHh-cCcchhcccccCCCceeccCCCCcccccccHHHHHH----HHhcCCC
Q 037095 20 FVEQYYCILH-QNPDVVHRFYQESSMVSRPDQSGSMTSVTTIKEIND----MIVSLDY 72 (334)
Q Consensus 20 FV~qYY~~L~-~~p~~L~~fY~~~S~l~~~g~~g~~~~~~G~~~I~~----~i~sL~~ 72 (334)
-|+.-.+.|. .+=+.|...|.+++.|.|+++.| ...|+++|.. .+..||-
T Consensus 7 iVqrlW~al~AgD~D~l~adyaeDaV~i~P~sa~---vl~GR~~~r~a~~~L~~~lP~ 61 (120)
T 3lyg_A 7 IVQRGWEALGAGDFDTLVTDYVEKMIFIMPGQAD---VLKGRQAFRSALDNLGEILPP 61 (120)
T ss_dssp HHHHHHHHHHHTCHHHHGGGEEEEEEEECSSTTC---EEESHHHHHHHHTTHHHHSCT
T ss_pred HHHHHHHHHhcCCHHHHHHhcccCeEEEccCccc---eeecHHHHHHHHHHHHhhCCC
Confidence 3556666666 45679999999999999997632 5789999999 5556663
Done!