BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037096
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 78/124 (62%), Gaps = 2/124 (1%)
Query: 2 GVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAE 61
GV + E S I P R+FKA +LDA+N++P + PQ IK + + GG G++++I F E
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGE 60
Query: 62 GSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTI 121
GS+Y Y KHK ID +D++N Y +IEGDAL D+L K + A+ GG I K+T
Sbjct: 61 GSQYGYVKHK--IDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTS 118
Query: 122 NYHT 125
+YHT
Sbjct: 119 HYHT 122
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 78/124 (62%), Gaps = 2/124 (1%)
Query: 2 GVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAE 61
GV + E S I P R+FKA +LDA+N++P + PQ IK + + GG G++++I F E
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60
Query: 62 GSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTI 121
GS+Y Y KHK ID +D++N Y +IEGDAL D+L K + A+ GG I K+T
Sbjct: 61 GSQYGYVKHK--IDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTS 118
Query: 122 NYHT 125
+YHT
Sbjct: 119 HYHT 122
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 1 MGVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFA 60
MGV + E S I ++FKA +LDA+N++P + PQ +K + + GG G++++I F
Sbjct: 1 MGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFG 60
Query: 61 EGSEYKYAKHK-HQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKT 119
EGS Y Y KHK H ID+V N Y++IEGDAL +++ K + +A GG I KT
Sbjct: 61 EGSHYGYVKHKIHSIDKV---NHTYSYSLIEGDALSENIEKIDYETKLVSAPHGGTIIKT 117
Query: 120 TINYHT 125
T YHT
Sbjct: 118 TSKYHT 123
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 2 GVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAE 61
GV + E S I RMFKA ILD + ++P + PQ I S++ + GG G++++INF E
Sbjct: 1 GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60
Query: 62 GSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTI 121
G +KY K + +DEVD N Y++IEG + D+L K A DGGC+ K +
Sbjct: 61 GFPFKYVKDR--VDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISN 118
Query: 122 NYHT 125
YHT
Sbjct: 119 KYHT 122
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 2 GVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAE 61
GV + E S I R+FKA ILD + + P + PQ I S++ + GG G++++I+F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 62 GSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTI 121
G +KY K + +DEVD N Y++IEG + D+L K A GDGG I K +
Sbjct: 61 GLPFKYVKDR--VDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATGDGGSILKISN 118
Query: 122 NYHT 125
YHT
Sbjct: 119 KYHT 122
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 2 GVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAE 61
GV + E S I R+FKA ILD +N++P + PQ I S++ + GG G++++I+F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTI 121
G +KY K + +DEVD N Y++IEG + D+L K A DGG I K +
Sbjct: 61 GFPFKYVKDR--VDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISN 118
Query: 122 NYHT 125
YHT
Sbjct: 119 KYHT 122
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With 8-Anilinonaphthalene-1-Sulfonate
( Ans) And Deoxycholic Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Dimethylbenzylammonium Propane Sulfonate
Length = 159
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 2 GVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAE 61
GV + E S I R+FKA ILD +N+ P + PQ I S++ + GG G++++I+F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTI 121
G +KY K + +DEVD N Y++IEG + D+L K A DGG I K +
Sbjct: 61 GFPFKYVKDR--VDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISN 118
Query: 122 NYHT 125
YHT
Sbjct: 119 KYHT 122
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 2 GVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAE 61
GV + E S I R+FKA ILD +N+ P + PQ I S++ + GG G++++I+F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTI 121
G +KY K + +DEVD N Y++IEG + D+L K A DGG I K +
Sbjct: 61 GFPFKYVKDR--VDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISN 118
Query: 122 NYHT 125
YHT
Sbjct: 119 KYHT 122
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 2 GVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAE 61
GV + E S I R+FKA ILD +N+ P + PQ I S++ + GG G++++I+F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 62 GSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTI 121
G +KY K + +DEVD N Y++IEG + D+L K A DGG I K +
Sbjct: 61 GLPFKYVKDR--VDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISN 118
Query: 122 NYHT 125
YHT
Sbjct: 119 KYHT 122
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 95.5 bits (236), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 2 GVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAE 61
GV + E S I R+FKA ILD +N+ P + PQ I S++ + GG G++++I+F E
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTI 121
G +KY K + +DEVD N Y++IEG + D+L K A DGG I K +
Sbjct: 61 GLPFKYVKDR--VDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISN 118
Query: 122 NYHT 125
YHT
Sbjct: 119 KYHT 122
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 2 GVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAE 61
GV + E S I R+FKA ILD +N+ P + PQ I S++ + GG G++++I+F E
Sbjct: 1 GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62 GSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTI 121
G +KY K + +DEVD N Y++IEG + D+L K A +GG I K
Sbjct: 61 GFPFKYVKDR--VDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINN 118
Query: 122 NYHT 125
YHT
Sbjct: 119 KYHT 122
>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
pdb|3IE5|B Chain B, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
Length = 165
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 1 MGVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFA 60
M + +E +S IAP R+FKAL+L+ + +L P KS + + GG G+V +I F
Sbjct: 7 MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66
Query: 61 EGSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTT 120
+G Y HK DE+D N CKY + EGD L D++ K + EA G GG K T
Sbjct: 67 DGHPLTYMLHK--FDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVG-GGSKGKIT 123
Query: 121 INYH 124
+ YH
Sbjct: 124 VTYH 127
>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4
Length = 157
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 2 GVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAE 61
GV + E+ S +AP ++KAL+ DA+N++P L F KS++ V GG G++++I F E
Sbjct: 1 GVFTFEDEINSPVAPATLYKALVTDADNVIPKALDSF-KSVENVEGNGGPGTIKKITFLE 59
Query: 62 GSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTI 121
E K+ HK I+ +DE NL Y+++ G AL D+ K S A +GG K T+
Sbjct: 60 DGETKFVLHK--IESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGPNGGSAGKLTV 117
Query: 122 NYHT 125
Y T
Sbjct: 118 KYET 121
>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With
Diphenylurea
Length = 158
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 1 MGVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFA 60
MGV + E S IAP +++KAL+ DA+ I+P + + I+S++ V GG G+++++ F
Sbjct: 1 MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAV-ETIQSVEIVEGNGGPGTIKKLTFI 59
Query: 61 EGSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTT 120
EG E KY HK I+ +DE NL Y+++ G L D++ K + +GG I K T
Sbjct: 60 EGGESKYVLHK--IEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVT 117
Query: 121 INYHT 125
I T
Sbjct: 118 IKIET 122
>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
pdb|1XDF|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
Length = 157
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 2 GVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAE 61
GV + E S IAP R++KAL+ DA+ I+P + + I+S++ V GG G+++++ E
Sbjct: 1 GVFTFEDESTSTIAPARLYKALVKDADAIIPKAV-EAIQSIETVEGNGGPGTIKKLTLIE 59
Query: 62 GSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTI 121
G E KY HK I+ VDE NL Y+++ G L D++ K + +GG I K TI
Sbjct: 60 GGETKYVLHK--IEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTI 117
Query: 122 NYHT 125
T
Sbjct: 118 KIET 121
>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
pdb|1IFV|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
Length = 155
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 2 GVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAE 61
GV + E SA+A ++FKAL D+++I+P ++ Q I+S++ V GG G+V++I +
Sbjct: 1 GVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQ-IQSVEIVEGNGGPGTVKKITASH 59
Query: 62 GSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTI 121
G Y HK ID +DE + Y+++ G L +SL K S + DGG I K +
Sbjct: 60 GGHTSYVLHK--IDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKV 117
Query: 122 NYHT 125
+HT
Sbjct: 118 KFHT 121
>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
(Mtn13) In Complex With Trans-Zeatin
Length = 168
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 1 MGVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFA 60
MGV +S E S+++ ++++ ++ D N I P LP+FI+ + + GG G+++++ F
Sbjct: 6 MGVITSESEYVSSLSAEKLYRGIVEDGNIIYPKALPRFIEKAETLEGDGGPGTIKKLTFV 65
Query: 61 EGSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALID-SLSKQLMRSNFEAAGDGGCICKT 119
+ K ID VD +N Y++ EG AL D L K + + GCI K+
Sbjct: 66 G----DFGSTKQHIDMVDRENCAYTYSVYEGIALSDQPLEKIVFEFKLVPTPEEGCIVKS 121
Query: 120 TINYHT 125
T Y+T
Sbjct: 122 TTKYYT 127
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 2 GVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAE 61
G+ + E S +AP +++KAL D++ I+P ++ + I+S++ V GG G++++I
Sbjct: 1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIH 59
Query: 62 GSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTI 121
+ HK +D +DE NL Y++I G+ L +SL K S DGG I K +
Sbjct: 60 DGHTSFVLHK--LDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINV 117
Query: 122 NYHT 125
+HT
Sbjct: 118 KFHT 121
>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16
pdb|1TW0|B Chain B, Native Crystal Structure Of Spe16
pdb|1TXC|A Chain A, Complex Crystal Structure Of Spe16 With Ans
pdb|1TXC|B Chain B, Complex Crystal Structure Of Spe16 With Ans
Length = 157
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 9 ELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYA 68
E S++AP +++KAL D++ I + I+S++ V GG G++++I EG + +
Sbjct: 8 ETSSSVAPAKLYKALTKDSDTIAQKIDGP-IQSIELVEGNGGVGTIKKITANEGDKTSFV 66
Query: 69 KHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHT 125
K +D +DE NL Y+++ G L +SL K + A GG I K T+ +HT
Sbjct: 67 LQK--VDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHT 121
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 1 MGVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFA 60
MGV + EL S+++ ++F+ ++D + +LP P KS++ D GG G+++ I
Sbjct: 1 MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEIKGD-GGPGTLKIITLP 59
Query: 61 EGSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTT 120
+G +ID V+++ L Y++I+GD L+ + DGG ICKTT
Sbjct: 60 DGG--PITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTT 117
Query: 121 INYHT 125
+HT
Sbjct: 118 AIFHT 122
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 1 MGVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFA 60
MG S + E+ S+++ ++F ++LD + ++P KS++ D GGAG+V I
Sbjct: 1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEVKGD-GGAGTVRIITLP 59
Query: 61 EGSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDAL---IDSLSKQLMRSNFEAAGDGGCIC 117
EGS + D V+++ L +I+GD L I+S+ ++ DGG I
Sbjct: 60 EGS--PITTMTVRTDAVNKEALSYDSTVIDGDILLGFIESIETHMV---VVPTADGGSIT 114
Query: 118 KTTINYHT 125
KTT +HT
Sbjct: 115 KTTAIFHT 122
>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|3C0V|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
Length = 155
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 19 MFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVD 78
++ L D ++P +LP +K + + GG G++ NF E + + +I E D
Sbjct: 18 LWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFL--PEVSPSYQREEITEFD 75
Query: 79 EKNLMCKYAMIEGDALIDSLS 99
E + +IEG L LS
Sbjct: 76 ESSHEIGLQVIEGGYLSQGLS 96
>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From
Medicago Truncatula In Complex With Gibberellic Acid
(Ga3)
Length = 156
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 26 DANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEG-SEYKYAKHKHQIDEVDEKNLMC 84
D ++P +LP +K + + GG G+ NF G + Y + I E DE +
Sbjct: 25 DITLVVPKVLPNIVKDVQVIEGDGGVGTKLIFNFLPGIAPVNY--QREVITEYDELSHTI 82
Query: 85 KYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINY 123
++EG L LS F A + + I+Y
Sbjct: 83 GLQVVEGGYLNQGLSYYKTTFQFSAISENKTLVNVKISY 121
>pdb|3PZD|A Chain A, Structure Of The Myosin X Myth4-FermDCC COMPLEX
Length = 511
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 26/151 (17%)
Query: 1 MGVSSSAQELKSAIAPLRMFKALILDANNILP---NLLPQFIKSLDRVLDAGGAGSV--E 55
+ + +S Q+L+S P+ + + ++ +++ P L Q IK ++V G G++
Sbjct: 70 IKIFNSLQQLESMSDPIPIIQGILQTGHDLRPLRDELYCQLIKQTNKVPHPGSVGNLYSW 129
Query: 56 QINFAEGSEY-------KYAK-HKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNF 107
QI + KY K H +I E + M KYA+ ++L + ++ + S
Sbjct: 130 QILTCLSCTFLPSRGILKYLKFHLKRIREQFPGSEMEKYALFTYESLKKTKCREFVPSRD 189
Query: 108 EAAG-------------DGGCICKTTINYHT 125
E GG CK TIN HT
Sbjct: 190 EIEALIHRQEMTSTVYCHGGGSCKITINSHT 220
>pdb|3AU4|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette Bound
To Its Specific Cargo, Dcc
pdb|3AU5|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette
pdb|3AU5|B Chain B, Structure Of The Human Myosin-X Myth4-Ferm Cassette
Length = 555
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 26/151 (17%)
Query: 1 MGVSSSAQELKSAIAPLRMFKALILDANNILP---NLLPQFIKSLDRVLDAGGAGSV--E 55
+ + +S Q+L+S P+ + + ++ +++ P L Q IK ++V G G++
Sbjct: 87 IKIFNSLQQLESMSDPIPIIQGILQTGHDLRPLRDELYCQLIKQTNKVPHPGSVGNLYSW 146
Query: 56 QINFAEGSEY-------KYAK-HKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQLMRSNF 107
QI + KY K H +I E M KYA+ ++L + ++ + S
Sbjct: 147 QILTCLSCTFLPSRGILKYLKFHLKRIREQFPGTEMEKYALFTYESLKKTKCREFVPSRD 206
Query: 108 EAAG-------------DGGCICKTTINYHT 125
E GG CK TIN HT
Sbjct: 207 EIEALIHRQEMTSTVYCHGGGSCKITINSHT 237
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 3 VSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSL 42
VS + Q +KSA+A + M + IL +N + +LLP F+ L
Sbjct: 325 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 364
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 3 VSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSL 42
VS + Q +KSA+A + M + IL +N + +LLP F+ L
Sbjct: 327 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 366
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 3 VSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSL 42
VS + Q +KSA+A + M + IL +N + +LLP F+ L
Sbjct: 334 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 373
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 3 VSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSL 42
VS + Q +KSA+A + M + IL +N + +LLP F+ L
Sbjct: 333 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 372
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 3 VSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSL 42
VS + Q +KSA+A + M + IL +N + +LLP F+ L
Sbjct: 334 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 373
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 3 VSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSL 42
VS + Q +KSA+A + M + IL +N + +LLP F+ L
Sbjct: 333 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 372
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 3 VSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSL 42
VS + Q +KSA+A + + IL +N + +LLP F+ L
Sbjct: 327 VSDANQHVKSALASVIXGLSPILGKDNTIEHLLPLFLAQL 366
>pdb|2JU5|A Chain A, Dsbh Oxidoreductase
Length = 154
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 64 EYKYAKHKHQIDEVDEKN--LMCKYAMIEGDAL--IDSLSKQLMRSNFEAAGDGGCICKT 119
E + + HQ +E +KN L +Y + L ID+ KQL R FE G + K
Sbjct: 88 EVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFIDAEGKQLARMGFEPGGGAAYVSKV 147
>pdb|3N6O|A Chain A, Crystal Structure Of The Gef And P4m Domain Of DrraSIDM
FROM Legionella Pneumophila
pdb|3N6O|B Chain B, Crystal Structure Of The Gef And P4m Domain Of DrraSIDM
FROM Legionella Pneumophila
Length = 311
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 40 KSLDRVLDAGGAGSVEQINFAEGSEYKYA------KHKHQIDEVDEKNLMCKYAMIEGDA 93
++L+ VL + G N +E YKYA +H++ + KN+ KY + GDA
Sbjct: 177 ETLESVLSSKGE------NLSEYLSYKYATKDEGREHRYTASTENFKNVKEKYQQMRGDA 230
Query: 94 L 94
L
Sbjct: 231 L 231
>pdb|3CWB|J Chain J, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|W Chain W, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|J Chain J, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|W Chain W, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|J Chain J, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|W Chain W, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|J Chain J, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|W Chain W, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|J Chain J, Chicken Cytochrome Bc1 Complex With Zn++ And An
Iodinated Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|W Chain W, Chicken Cytochrome Bc1 Complex With Zn++ And An
Iodinated Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|J Chain J, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|W Chain W, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|J Chain J, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|W Chain W, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|J Chain J, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|W Chain W, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|J Chain J, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|W Chain W, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|J Chain J, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|W Chain W, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|J Chain J, Cytochrome Bc1 Complex From Chicken With Famoxadone
Bound
pdb|3L74|W Chain W, Cytochrome Bc1 Complex From Chicken With Famoxadone
Bound
pdb|3L75|J Chain J, Cytochrome Bc1 Complex From Chicken With Fenamidone
Bound
pdb|3L75|W Chain W, Cytochrome Bc1 Complex From Chicken With Fenamidone
Bound
pdb|3TGU|J Chain J, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed
Moa Inhibitor Bound
pdb|3TGU|W Chain W, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed
Moa Inhibitor Bound
Length = 61
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 42 LDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDE 76
+R D G E +N EG +K+ KHK++ E
Sbjct: 28 FERAFDQGADAIFEHLN--EGKLWKHIKHKYEASE 60
>pdb|3PK0|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE
SDR FROM Mycobacterium Smegmatis
pdb|3PK0|B Chain B, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE
SDR FROM Mycobacterium Smegmatis
pdb|3PK0|C Chain C, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE
SDR FROM Mycobacterium Smegmatis
pdb|3PK0|D Chain D, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE
SDR FROM Mycobacterium Smegmatis
Length = 262
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 50 GAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDALIDSLSKQL 102
GA Q+ F + + A HK ++ + N+M + + G+ I S+++ +
Sbjct: 162 GATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENGEEYIASMARSI 214
>pdb|1EJJ|A Chain A, Crystal Structural Analysis Of Phosphoglycerate Mutase
Cocrystallized With 3-Phosphoglycerate
pdb|1EQJ|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Bacillus
Stearothermophilus Complexed With 2-Phosphoglycerate
pdb|1O98|A Chain A, 1.4a Crystal Structure Of Phosphoglycerate Mutase From
Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 26.2 bits (56), Expect = 5.8, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 18 RMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQIN 58
R++ LD ++ P PQ+IK L + G G + ++
Sbjct: 143 RVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLS 183
>pdb|1O99|A Chain A, Crystal Structure Of The S62a Mutant Of Phosphoglycerate
Mutase From Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 26.2 bits (56), Expect = 5.8, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 18 RMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQIN 58
R++ LD ++ P PQ+IK L + G G + ++
Sbjct: 143 RVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLS 183
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 35 LPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCK 85
P + S+ V+D G AGS E N + S + YA H+H I + N K
Sbjct: 52 WPSTLLSVQNVIDCGNAGSCEGGN--DLSVWDYA-HQHGIPDETCNNYQAK 99
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 35 LPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCK 85
P + S+ V+D G AGS E N + S + YA H+H I + N K
Sbjct: 87 WPSTLLSVQNVIDCGNAGSCEGGN--DLSVWDYA-HQHGIPDETCNNYQAK 134
>pdb|3MEW|A Chain A, Crystal Structure Of Novel Tudor Domain-Containing
Protein Sgf29
Length = 159
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 55 EQINFAEGSEYKYAKHKHQIDEVDEK 80
EQ AE Y +A +K+++D++DE+
Sbjct: 45 EQWILAEVVSYSHATNKYEVDDIDEE 70
>pdb|3ME9|A Chain A, Crystal Structure Of Sgf29 In Complex With H3k4me3
Peptide
pdb|3ME9|B Chain B, Crystal Structure Of Sgf29 In Complex With H3k4me3
Peptide
pdb|3MET|A Chain A, Crystal Structure Of Sgf29 In Complex With H3k4me2
pdb|3MET|B Chain B, Crystal Structure Of Sgf29 In Complex With H3k4me2
pdb|3MEU|A Chain A, Crystal Structure Of Sgf29 In Complex With H3r2me2sk4me3
pdb|3MEU|B Chain B, Crystal Structure Of Sgf29 In Complex With H3r2me2sk4me3
pdb|3MEV|A Chain A, Crystal Structure Of Sgf29 In Complex With R2ak4me3
pdb|3MEV|B Chain B, Crystal Structure Of Sgf29 In Complex With R2ak4me3
Length = 180
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 55 EQINFAEGSEYKYAKHKHQIDEVDEK 80
EQ AE Y +A +K+++D++DE+
Sbjct: 60 EQWILAEVVSYSHATNKYEVDDIDEE 85
>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
pdb|4D93|B Chain B, Crystal Structure Of Tep1s
pdb|4D93|C Chain C, Crystal Structure Of Tep1s
Length = 1323
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 32 PNLLPQFIKSLDRVLDA-GGAGSVEQINFAEGS---EYKYA---KHKHQIDE 76
PNLL IK+LD +L G G + F +Y YA K +H ID+
Sbjct: 818 PNLLTMVIKNLDNLLAVPTGCGEQNMVKFVPNILVLDYLYATGSKEQHLIDK 869
>pdb|4FEY|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
With Bound Adp From Francisella Tularensis Subsp.
Tularensis Schu S4
Length = 395
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 23 LILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSE 64
+ILD ++ + +KS + +L G G E NFAEG++
Sbjct: 290 MILDIGPESQKIIAELLKSANTILWNGPVGVFEFDNFAEGTK 331
>pdb|3MEA|A Chain A, Crystal Structure Of The Sgf29 In Complex With H3k4me3
Length = 180
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 55 EQINFAEGSEYKYAKHKHQIDEVDEK 80
EQ AE Y +A +K+++D++DE+
Sbjct: 62 EQWILAEVVSYSHATNKYEVDDIDEE 87
>pdb|3L0M|A Chain A, Crystal Structure Of Rab1-Activation Domain And P4m Domain
Of SidmDRRA FROM LEGIONELLA
pdb|3L0M|B Chain B, Crystal Structure Of Rab1-Activation Domain And P4m Domain
Of SidmDRRA FROM LEGIONELLA
Length = 336
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
Query: 40 KSLDRVLDAGGAGSVEQINFAEGSEYKYA------KHKHQIDEVDEKNLMCKYAMIEGDA 93
++L+ VL + G N +E YKYA +H++ + KN+ KY GDA
Sbjct: 202 ETLESVLSSKGE------NLSEYLSYKYATKDEGREHRYTASTENFKNVKEKYQQXRGDA 255
Query: 94 L 94
L
Sbjct: 256 L 256
>pdb|4B4T|T Chain T, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 274
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 44 RVLDAGGAGSVEQINFAEGSEY------KYAKHKHQIDEVDEK 80
R+L+ G S++ NF Y Y + H++ E D+K
Sbjct: 60 RILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKK 102
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 23 LILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDE 79
LILD N L N LP + + +D G GS+ I F G + K + I +V E
Sbjct: 374 LILDYVNQLCNRLPSPMG--ESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGE 428
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,752,880
Number of Sequences: 62578
Number of extensions: 139023
Number of successful extensions: 347
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 53
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)