Query 037096
Match_columns 129
No_of_seqs 139 out of 774
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 2.3E-40 4.9E-45 241.4 16.8 124 1-128 1-125 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 1.8E-34 3.8E-39 208.7 17.3 121 4-128 1-122 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.7 1.7E-16 3.8E-21 109.8 14.5 112 5-127 2-113 (140)
4 PF10604 Polyketide_cyc2: Poly 99.6 5.6E-14 1.2E-18 97.2 16.6 107 4-125 2-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.5 4E-13 8.7E-18 94.5 13.4 108 7-128 2-117 (144)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.5 3.5E-12 7.5E-17 89.5 13.9 111 6-127 1-112 (142)
7 cd07819 SRPBCC_2 Ligand-bindin 99.4 1.9E-11 4.1E-16 84.8 15.5 111 4-127 2-114 (140)
8 cd08865 SRPBCC_10 Ligand-bindi 99.4 1.6E-11 3.4E-16 84.6 13.9 106 7-125 2-108 (140)
9 cd07813 COQ10p_like Coenzyme Q 99.4 1.1E-11 2.3E-16 87.2 12.0 110 6-128 1-110 (138)
10 cd08862 SRPBCC_Smu440-like Lig 99.3 2.6E-10 5.6E-15 79.0 15.0 106 5-125 2-107 (138)
11 cd07822 SRPBCC_4 Ligand-bindin 99.3 5.4E-10 1.2E-14 77.1 14.8 109 6-125 2-111 (141)
12 cd07812 SRPBCC START/RHO_alpha 99.3 3.5E-10 7.5E-15 75.7 13.3 110 7-127 2-112 (141)
13 cd07820 SRPBCC_3 Ligand-bindin 99.2 8.5E-10 1.8E-14 77.7 12.8 108 6-126 1-112 (137)
14 cd08860 TcmN_ARO-CYC_like N-te 99.2 2.1E-09 4.5E-14 77.6 14.1 110 5-127 2-114 (146)
15 cd07814 SRPBCC_CalC_Aha1-like 99.2 1.5E-09 3.3E-14 75.1 12.8 110 6-126 2-111 (139)
16 cd07818 SRPBCC_1 Ligand-bindin 99.2 3.2E-09 6.9E-14 75.1 14.4 111 4-126 2-117 (150)
17 cd07817 SRPBCC_8 Ligand-bindin 99.1 1.3E-09 2.7E-14 75.6 11.5 106 6-127 2-107 (139)
18 cd05018 CoxG Carbon monoxide d 99.1 2.5E-09 5.5E-14 74.4 12.6 111 5-127 2-114 (144)
19 cd07825 SRPBCC_7 Ligand-bindin 99.1 4.5E-09 9.8E-14 73.7 13.0 111 6-127 2-116 (144)
20 cd07824 SRPBCC_6 Ligand-bindin 99.0 2.1E-08 4.4E-13 71.4 14.5 107 6-126 3-112 (146)
21 PF03364 Polyketide_cyc: Polyk 98.9 4.3E-08 9.4E-13 67.7 12.2 100 12-125 1-103 (130)
22 cd07823 SRPBCC_5 Ligand-bindin 98.9 4.2E-08 9.1E-13 69.7 12.3 115 6-127 1-115 (146)
23 PRK10724 hypothetical protein; 98.9 5.3E-08 1.1E-12 71.4 12.8 110 5-127 16-125 (158)
24 COG3427 Carbon monoxide dehydr 98.6 1.1E-06 2.3E-11 64.0 11.3 110 5-124 2-111 (146)
25 PF06240 COXG: Carbon monoxide 98.5 7.7E-06 1.7E-10 58.2 12.6 107 9-127 2-110 (140)
26 COG5637 Predicted integral mem 98.4 3.1E-06 6.6E-11 63.7 9.8 109 3-128 69-179 (217)
27 cd08899 SRPBCC_CalC_Aha1-like_ 98.4 9.5E-06 2.1E-10 58.6 11.4 104 2-125 9-112 (157)
28 cd08898 SRPBCC_CalC_Aha1-like_ 98.2 3.8E-05 8.3E-10 53.5 10.3 106 5-122 2-111 (145)
29 cd08893 SRPBCC_CalC_Aha1-like_ 98.2 9.6E-05 2.1E-09 50.8 12.0 106 5-122 1-107 (136)
30 cd08900 SRPBCC_CalC_Aha1-like_ 98.1 0.0003 6.5E-09 49.6 13.4 109 6-123 2-114 (143)
31 cd08894 SRPBCC_CalC_Aha1-like_ 98.0 0.00025 5.4E-09 49.9 12.5 106 6-124 2-109 (139)
32 cd08896 SRPBCC_CalC_Aha1-like_ 98.0 0.00034 7.3E-09 49.6 13.3 110 6-123 2-115 (146)
33 cd08895 SRPBCC_CalC_Aha1-like_ 98.0 0.00039 8.4E-09 49.3 13.3 111 5-123 1-119 (146)
34 cd07826 SRPBCC_CalC_Aha1-like_ 98.0 0.00038 8.3E-09 49.3 12.9 109 6-124 2-112 (142)
35 cd08876 START_1 Uncharacterize 98.0 0.00074 1.6E-08 49.9 14.9 120 4-128 41-169 (195)
36 COG2867 Oligoketide cyclase/li 97.8 0.00027 5.9E-09 51.4 8.6 111 5-127 3-113 (146)
37 cd08897 SRPBCC_CalC_Aha1-like_ 97.7 0.00067 1.4E-08 47.3 10.4 100 5-120 1-104 (133)
38 cd08891 SRPBCC_CalC Ligand-bin 97.6 0.0033 7.2E-08 44.6 12.8 105 6-124 2-116 (149)
39 cd08901 SRPBCC_CalC_Aha1-like_ 97.6 0.0022 4.7E-08 45.0 11.6 98 6-122 2-99 (136)
40 cd08892 SRPBCC_Aha1 Putative h 97.4 0.0046 9.9E-08 42.9 10.6 99 6-124 2-100 (126)
41 PF08327 AHSA1: Activator of H 97.3 0.011 2.4E-07 39.8 11.6 95 13-121 1-95 (124)
42 COG3832 Uncharacterized conser 96.7 0.052 1.1E-06 39.0 11.0 32 3-36 7-38 (149)
43 PTZ00220 Activator of HSP-90 A 96.3 0.067 1.5E-06 37.6 9.3 91 12-122 1-93 (132)
44 cd08873 START_STARD14_15-like 95.8 0.71 1.5E-05 36.1 14.6 116 4-125 77-204 (235)
45 cd08874 START_STARD9-like C-te 95.6 0.75 1.6E-05 35.1 14.4 116 6-126 47-176 (205)
46 cd08863 SRPBCC_DUF1857 DUF1857 95.2 0.72 1.6E-05 33.4 11.2 74 6-90 2-82 (141)
47 cd00177 START Lipid-binding ST 95.1 0.79 1.7E-05 32.7 15.1 120 4-128 39-167 (193)
48 PF10698 DUF2505: Protein of u 94.8 0.89 1.9E-05 32.9 10.8 109 6-125 1-127 (159)
49 cd08905 START_STARD1-like Chol 94.4 1.6 3.5E-05 33.0 11.8 119 6-128 51-181 (209)
50 PF08982 DUF1857: Domain of un 93.6 0.79 1.7E-05 33.4 8.5 70 6-86 2-79 (149)
51 cd08914 START_STARD15-like Lip 92.0 4.9 0.00011 31.5 13.1 118 4-125 78-205 (236)
52 cd08906 START_STARD3-like Chol 91.7 4.6 9.9E-05 30.6 13.7 117 5-128 50-181 (209)
53 cd08869 START_RhoGAP C-termina 90.9 5.3 0.00012 29.8 14.4 116 6-128 46-170 (197)
54 cd08913 START_STARD14-like Lip 89.8 8.1 0.00018 30.2 14.1 113 5-123 82-207 (240)
55 cd08868 START_STARD1_3_like Ch 89.6 7.1 0.00015 29.1 13.9 119 6-128 50-180 (208)
56 cd08903 START_STARD5-like Lipi 89.3 7.8 0.00017 29.2 12.4 119 6-128 48-180 (208)
57 COG4276 Uncharacterized conser 87.8 8.6 0.00019 28.0 11.6 111 5-127 3-119 (153)
58 cd08871 START_STARD10-like Lip 84.3 15 0.00033 27.6 14.0 118 6-128 49-175 (222)
59 cd08877 START_2 Uncharacterize 83.9 16 0.00034 27.4 11.7 119 4-128 46-186 (215)
60 cd08911 START_STARD7-like Lipi 81.0 21 0.00046 26.8 13.7 118 5-127 46-178 (207)
61 cd08870 START_STARD2_7-like Li 80.6 21 0.00047 26.7 15.0 120 4-128 50-181 (209)
62 smart00234 START in StAR and p 77.3 25 0.00055 25.6 15.2 122 4-128 45-175 (206)
63 PF11485 DUF3211: Protein of u 70.9 4.7 0.0001 29.1 2.8 99 6-124 3-101 (136)
64 KOG3177 Oligoketide cyclase/li 65.3 51 0.0011 25.7 7.5 104 10-126 74-181 (227)
65 cd08908 START_STARD12-like C-t 63.1 65 0.0014 24.5 12.6 115 4-128 52-177 (204)
66 PF11687 DUF3284: Domain of un 56.7 63 0.0014 22.2 11.0 100 8-126 3-103 (120)
67 cd08910 START_STARD2-like Lipi 55.8 85 0.0018 23.5 11.0 116 5-128 50-179 (207)
68 KOG2445 Nuclear pore complex c 44.6 59 0.0013 26.9 5.1 17 108-124 304-320 (361)
69 PF01852 START: START domain; 38.0 1.5E+02 0.0033 21.3 14.8 118 4-128 46-175 (206)
70 cd00222 CollagenBindB Collagen 35.7 85 0.0019 23.6 4.6 72 12-93 3-74 (187)
71 COG0231 Efp Translation elonga 34.8 83 0.0018 22.3 4.2 34 51-93 48-81 (131)
72 cd08867 START_STARD4_5_6-like 33.6 2E+02 0.0042 21.2 14.4 118 6-128 48-180 (206)
73 PF08473 VGCC_alpha2: Neuronal 33.5 1E+02 0.0023 20.8 4.2 29 76-105 38-72 (94)
74 PF14275 DUF4362: Domain of un 32.9 1.6E+02 0.0034 20.0 5.1 16 49-64 28-44 (98)
75 KOG0301 Phospholipase A2-activ 31.7 1.9E+02 0.0041 26.4 6.6 77 3-89 146-228 (745)
76 PF07474 G2F: G2F domain; Int 30.4 1E+02 0.0022 23.4 4.2 35 56-93 93-127 (192)
77 PF15650 Tox-REase-9: Restrict 28.6 43 0.00094 22.4 1.7 29 51-89 25-53 (89)
78 PF10313 DUF2415: Uncharacteri 27.9 54 0.0012 18.9 1.8 11 52-62 1-11 (43)
79 cd00255 nidG2 Nidogen, G2 doma 24.8 1.7E+02 0.0036 22.9 4.6 74 12-93 44-126 (224)
80 PF11248 DUF3046: Protein of u 21.1 72 0.0016 19.9 1.6 18 11-28 41-58 (63)
81 PF02087 Nitrophorin: Nitropho 20.9 3.7E+02 0.0081 20.2 5.7 25 67-93 49-73 (178)
82 PF00028 Cadherin: Cadherin do 20.6 2.3E+02 0.0049 17.6 4.1 12 99-110 65-76 (93)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=2.3e-40 Score=241.36 Aligned_cols=124 Identities=33% Similarity=0.607 Sum_probs=117.3
Q ss_pred CccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCC-eEEEEEEcCCCceeEEEEeeeEeEEec
Q 037096 1 MGVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAG-SVEQINFAEGSEYKYAKHKHQIDEVDE 79 (129)
Q Consensus 1 m~~~~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~G-svr~~~~~~g~~~~~~kE~~rl~~iD~ 79 (129)
|++++++.|+++++||+|+|++|+ +.++++|+++|++|++++++||||++| |||.|+|.+|++.+++|| ||+.+|+
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~~-~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Ke--kve~~D~ 77 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAFK-SSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKE--KVEAIDE 77 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHHT-THHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEE--EEEEEET
T ss_pred CCcEEEEEEEEecCCHHHHHHHHh-cCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEE--EEEeecC
Confidence 999999999999999999999998 688899999999999999999999877 999999999999999999 9999999
Q ss_pred ccceEEEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecCC
Q 037096 80 KNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYRQ 128 (129)
Q Consensus 80 ~~~~~~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~~ 128 (129)
+|++++|++||||+|. .|++|..++++.|+++|+|+++|+++|+++++
T Consensus 78 ~~~~~~y~viEGd~l~-~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~ 125 (151)
T PF00407_consen 78 ENKTITYTVIEGDVLG-DYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGE 125 (151)
T ss_dssp TTTEEEEEEEEETTGT-TTEEEEEEEEEEEETTSCEEEEEEEEEEESST
T ss_pred CCcEEEEEEEeccccc-cEEEEEEEEEecCCCCCceEEEEEEEEEecCC
Confidence 9999999999999986 79999999999999998999999999999986
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=1.8e-34 Score=208.71 Aligned_cols=121 Identities=36% Similarity=0.629 Sum_probs=110.2
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcccc-ccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccc
Q 037096 4 SSSAQELKSAIAPLRMFKALILDANN-ILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNL 82 (129)
Q Consensus 4 ~~~~~ei~i~a~a~~vw~~~~~d~~~-l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~ 82 (129)
++++.|++|+||||++|++++ ||.+ +.+.|+| .|++|++++|+|++||||.|+|.+|++..++|| ||+++|+++|
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~-~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE--~l~~~D~~~~ 76 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFV-LDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKE--RIDAVDEENK 76 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHh-cChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEE--EEEEEccccc
Confidence 378999999999999999998 9985 4455666 799999999999999999999999887778999 9999999999
Q ss_pred eEEEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecCC
Q 037096 83 MCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYRQ 128 (129)
Q Consensus 83 ~~~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~~ 128 (129)
+++|+++||+++.++|++|+++++|.|.++++|+++|+++|++.++
T Consensus 77 ~~~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 77 TYKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGD 122 (148)
T ss_pred EEEEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCC
Confidence 9999999999875579999999999999888999999999999875
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.74 E-value=1.7e-16 Score=109.75 Aligned_cols=112 Identities=15% Similarity=0.286 Sum_probs=96.9
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceE
Q 037096 5 SSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMC 84 (129)
Q Consensus 5 ~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~ 84 (129)
.++.+++|++|++++|+++. |+.++ |+|+|. +.++++++++.++|+++.+.+..|. .+++ ++..+|+.++.+
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~-d~~~~-~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g~---~~~~--~i~~~~~~~~~i 73 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLS-DFGGL-HKWHPA-VASCELEGGGPGVGAVRTVTLKDGG---TVRE--RLLALDDAERRY 73 (140)
T ss_pred cEEEEEEECCCHHHHHHHHh-CcCch-hhhccC-cceEEeecCCCCCCeEEEEEeCCCC---EEEE--EehhcCccCCEE
Confidence 47889999999999999998 99986 899996 7899987775468999999998763 5788 999999988899
Q ss_pred EEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecC
Q 037096 85 KYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYR 127 (129)
Q Consensus 85 ~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~ 127 (129)
.|++++|+. ++.++..++++.|.++|+|.++|+..|++.+
T Consensus 74 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~ 113 (140)
T cd07821 74 SYRIVEGPL---PVKNYVATIRVTPEGDGGTRVTWTAEFDPPE 113 (140)
T ss_pred EEEecCCCC---CcccceEEEEEEECCCCccEEEEEEEEecCC
Confidence 999998742 4678889999999888789999999999875
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.63 E-value=5.6e-14 Score=97.16 Aligned_cols=107 Identities=20% Similarity=0.351 Sum_probs=87.5
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccce
Q 037096 4 SSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLM 83 (129)
Q Consensus 4 ~~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~ 83 (129)
.+++.++.|++||+++|+.+. |+.++ |+|+|. +.++++.+++ ++|..+.++...-. .+.+ ++..+|++++.
T Consensus 2 ~~~~~~~~v~a~~e~V~~~l~-d~~~~-~~w~~~-~~~~~~~~~~-~~~~~~~~~~~g~~---~~~~--~i~~~~~~~~~ 72 (139)
T PF10604_consen 2 FKVEVSIEVPAPPEAVWDLLS-DPENW-PRWWPG-VKSVELLSGG-GPGTERTVRVAGRG---TVRE--EITEYDPEPRR 72 (139)
T ss_dssp EEEEEEEEESS-HHHHHHHHT-TTTGG-GGTSTT-EEEEEEEEEC-STEEEEEEEECSCS---EEEE--EEEEEETTTTE
T ss_pred EEEEEEEEECCCHHHHHHHHh-Chhhh-hhhhhc-eEEEEEcccc-ccceeEEEEecccc---ceeE--EEEEecCCCcE
Confidence 389999999999999999998 99986 899996 8899977633 45666777754322 5888 99999988999
Q ss_pred EEEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEe
Q 037096 84 CKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHT 125 (129)
Q Consensus 84 ~~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~ 125 (129)
+.|++. . .++..+..++++.|.++| |.++|+.+|+.
T Consensus 73 ~~~~~~---~--~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~ 108 (139)
T PF10604_consen 73 ITWRFV---P--SGFTNGTGRWRFEPVGDG-TRVTWTVEFEP 108 (139)
T ss_dssp EEEEEE---S--SSSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred EEEEEE---e--cceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence 999996 1 256788999999998865 99999999996
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.53 E-value=4e-13 Score=94.49 Aligned_cols=108 Identities=16% Similarity=0.231 Sum_probs=82.0
Q ss_pred EEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCe-------EEEEEEcCCCceeEEEEeeeEeEEec
Q 037096 7 AQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGS-------VEQINFAEGSEYKYAKHKHQIDEVDE 79 (129)
Q Consensus 7 ~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gs-------vr~~~~~~g~~~~~~kE~~rl~~iD~ 79 (129)
+.++.|++||+++|+++. |+.++ |+|+|. +++++++++.+ .+. .+.+...-. ..+.. ++.+.++
T Consensus 2 ~~~~~i~a~~~~Vw~~l~-D~~~~-~~w~p~-v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~---~~v~~--~~~~~~~ 72 (144)
T cd08866 2 VARVRVPAPPETVWAVLT-DYDNL-AEFIPN-LAESRLLERNG-NRVVLEQTGKQGILFFKFE---ARVVL--ELREREE 72 (144)
T ss_pred eEEEEECCCHHHHHHHHh-ChhhH-HhhCcC-ceEEEEEEcCC-CEEEEEEeeeEEEEeeeee---EEEEE--EEEEecC
Confidence 568999999999999998 99996 999997 88999887643 121 111111001 13445 6666776
Q ss_pred ccceEEEEEEecCCCccCeeEEEEEEEEEEcCC-CccEEEEEEEEEecCC
Q 037096 80 KNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGD-GGCICKTTINYHTYRQ 128 (129)
Q Consensus 80 ~~~~~~y~iieg~~l~~~~~~~~~~~~v~p~~~-g~s~v~W~~~y~~~~~ 128 (129)
.++.+.|++++|+ +..|..++++.|.++ |+|.++|.++|++.+.
T Consensus 73 ~~~~i~~~~~~g~-----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~ 117 (144)
T cd08866 73 FPRELDFEMVEGD-----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF 117 (144)
T ss_pred CCceEEEEEcCCc-----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC
Confidence 6889999998775 468899999999987 6899999999998754
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.47 E-value=3.5e-12 Score=89.51 Aligned_cols=111 Identities=18% Similarity=0.238 Sum_probs=82.9
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEc-CCCceeEEEEeeeEeEEecccceE
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFA-EGSEYKYAKHKHQIDEVDEKNLMC 84 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~-~g~~~~~~kE~~rl~~iD~~~~~~ 84 (129)
++.+++|++||+++|+++. |+.++ |+|+|. .+++.++++++...++.+... .|....+ + ....+|++.+.+
T Consensus 1 ~~~s~~i~ap~~~V~~~l~-D~~~~-p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~--~~~~~~~~~~~i 72 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLA-DAERW-PEFLPT--VHVERLELDGGVERLRMWATAFDGSVHTW--T--SRRVLDPEGRRI 72 (142)
T ss_pred CeEEEEEcCCHHHHHHHHH-hHHhh-hccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEEEE--E--EEEEEcCCCCEE
Confidence 3679999999999999998 99996 899996 455545543322246656665 3332222 3 445678888899
Q ss_pred EEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecC
Q 037096 85 KYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYR 127 (129)
Q Consensus 85 ~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~ 127 (129)
.|..+++.. .+..+..+++|.|.++++|.|+|+.+|+..+
T Consensus 73 ~~~~~~~~~---~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~ 112 (142)
T cd08861 73 VFRQEEPPP---PVASMSGEWRFEPLGGGGTRVTLRHDFTLGI 112 (142)
T ss_pred EEEEeeCCC---ChhhheeEEEEEECCCCcEEEEEEEEEEECC
Confidence 999987543 3678888999999887789999999999875
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.43 E-value=1.9e-11 Score=84.80 Aligned_cols=111 Identities=18% Similarity=0.263 Sum_probs=80.9
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCeEEEEEEcCCCc-eeEEEEeeeEeEEeccc
Q 037096 4 SSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDA-GGAGSVEQINFAEGSE-YKYAKHKHQIDEVDEKN 81 (129)
Q Consensus 4 ~~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGd-g~~Gsvr~~~~~~g~~-~~~~kE~~rl~~iD~~~ 81 (129)
.+++.++.|+|||+++|+++. |+.++ |+|+|. +.+++.++++ ++.+....+++..++- ..+.. +++ .++ .
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~-D~~~~-~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~-~ 73 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLA-DVEAY-PEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYAL---EYT-WDG-A 73 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHh-Chhhh-hhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEE---EEE-EcC-C
Confidence 478999999999999999998 99996 999996 8899986653 3333344455543321 11111 222 223 6
Q ss_pred ceEEEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecC
Q 037096 82 LMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYR 127 (129)
Q Consensus 82 ~~~~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~ 127 (129)
+.++|+..+|. ...++..++++.|.++ +|.++|+.+|+..+
T Consensus 74 ~~i~~~~~~~~----~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 74 GSVSWTLVEGE----GNRSQEGSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred CcEEEEEeccc----ceeEEEEEEEEEECCC-CEEEEEEEEEEecC
Confidence 78999998875 3567889999999876 69999999999754
No 8
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.41 E-value=1.6e-11 Score=84.58 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=82.0
Q ss_pred EEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceEE
Q 037096 7 AQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDA-GGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCK 85 (129)
Q Consensus 7 ~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGd-g~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~~ 85 (129)
+.++.|++|+++||+.+. |+.++ |+|.|. +.+++...++ .++|+...+....++....+++ ++...| .++.+.
T Consensus 2 ~~~~~i~ap~~~Vw~~l~-d~~~~-~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~--~v~~~~-p~~~~~ 75 (140)
T cd08865 2 EESIVIERPVEEVFAYLA-DFENA-PEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTY--EITEYE-PGRRVV 75 (140)
T ss_pred ceEEEEcCCHHHHHHHHH-Cccch-hhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEE--EEEEec-CCcEEE
Confidence 578999999999999998 99986 999997 6788876543 3689988887654432234678 888887 457888
Q ss_pred EEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEe
Q 037096 86 YAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHT 125 (129)
Q Consensus 86 y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~ 125 (129)
|...++. + .+..++++.|.++ +|.++|+.+|+.
T Consensus 76 ~~~~~~~-~-----~~~~~~~~~~~~~-~t~v~~~~~~~~ 108 (140)
T cd08865 76 FRGSSGP-F-----PYEDTYTFEPVGG-GTRVRYTAELEP 108 (140)
T ss_pred EEecCCC-c-----ceEEEEEEEEcCC-ceEEEEEEEEcc
Confidence 9886542 2 3578899999765 699999999986
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.39 E-value=1.1e-11 Score=87.16 Aligned_cols=110 Identities=10% Similarity=0.170 Sum_probs=84.1
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceEE
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCK 85 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~~ 85 (129)
++.+++|++|++.+|+++. |..++ |+|+|. +.+++++++++ .+....++..-.+....... ++. ++. ++++.
T Consensus 1 ~~~s~~i~ap~~~v~~~i~-D~~~~-~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~--~~~-~~~-~~~i~ 72 (138)
T cd07813 1 YSKSRLVPYSAEQMFDLVA-DVERY-PEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTS--RVT-LVP-PESIE 72 (138)
T ss_pred CeEEEEcCCCHHHHHHHHH-HHHhh-hhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEE--EEE-ecC-CCEEE
Confidence 3678999999999999998 99996 999997 89999988765 34444455553332122233 443 665 66889
Q ss_pred EEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecCC
Q 037096 86 YAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYRQ 128 (129)
Q Consensus 86 y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~~ 128 (129)
++.++|. ++.+..++++.|.++|+|.++|.+.|++.+.
T Consensus 73 ~~~~~g~-----~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~ 110 (138)
T cd07813 73 AELVDGP-----FKHLEGEWRFKPLGENACKVEFDLEFEFKSR 110 (138)
T ss_pred EEecCCC-----hhhceeEEEEEECCCCCEEEEEEEEEEECCH
Confidence 9988873 5678899999999888999999999998753
No 10
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.31 E-value=2.6e-10 Score=79.03 Aligned_cols=106 Identities=17% Similarity=0.182 Sum_probs=79.4
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceE
Q 037096 5 SSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMC 84 (129)
Q Consensus 5 ~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~ 84 (129)
+++.++.|+||+++||+++. |+.++ |+|+|+ +.++++..+..++|+...++...+. .+.. +|.++++. +.+
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~-d~~~~-~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~~---~~~~--~i~~~~p~-~~~ 72 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLT-DVENW-PAWTPS-VETVRLEGPPPAVGSSFKMKPPGLV---RSTF--TVTELRPG-HSF 72 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hhhhc-ccccCc-ceEEEEecCCCCCCcEEEEecCCCC---ceEE--EEEEecCC-CEE
Confidence 57899999999999999998 99986 999996 7899976543267876666654332 3556 77778855 457
Q ss_pred EEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEe
Q 037096 85 KYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHT 125 (129)
Q Consensus 85 ~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~ 125 (129)
.++... + ...+..+++++|.++++|.++|+.+|..
T Consensus 73 ~~~~~~-~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~ 107 (138)
T cd08862 73 TWTGPA-P-----GISAVHRHEFEAKPDGGVRVTTSESLSG 107 (138)
T ss_pred EEEecC-C-----CEEEEEEEEEEEcCCCcEEEEEEEEeec
Confidence 887532 2 2344578899998767899999998875
No 11
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.27 E-value=5.4e-10 Score=77.10 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=80.2
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCC-ceeEEEEeeeEeEEecccceE
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGS-EYKYAKHKHQIDEVDEKNLMC 84 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~-~~~~~kE~~rl~~iD~~~~~~ 84 (129)
++.++.|++|+++||+++. |+.++ |+|+|. +..++... .++|+...+.+..++ ......+ ++.++|+ ++++
T Consensus 2 v~~~~~i~ap~~~Vw~~~~-d~~~~-~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~--~v~~~~p-~~~~ 73 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLT-DFPSY-PEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKP--RVTEVEP-PRRL 73 (141)
T ss_pred eEEEEEecCCHHHHHHHHh-ccccc-cccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEE--EEEEEcC-CCEe
Confidence 5789999999999999998 99986 999985 55555321 467777777765432 2234667 7888887 4678
Q ss_pred EEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEe
Q 037096 85 KYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHT 125 (129)
Q Consensus 85 ~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~ 125 (129)
.|+...++.. ......++.+.|.++++|.++|+..|..
T Consensus 74 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~T~~~~~~~~~g 111 (141)
T cd07822 74 AWRGGLPFPG---LLDGEHSFELEPLGDGGTRFVHRETFSG 111 (141)
T ss_pred EEEecCCCCc---EeeEEEEEEEEEcCCCcEEEEEeeEEEE
Confidence 8998766532 2345678899998667899999887754
No 12
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.27 E-value=3.5e-10 Score=75.68 Aligned_cols=110 Identities=18% Similarity=0.258 Sum_probs=84.5
Q ss_pred EEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceEE
Q 037096 7 AQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDA-GGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCK 85 (129)
Q Consensus 7 ~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGd-g~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~~ 85 (129)
+.++.|++|++++|+++. |+.++ ++|.|. +.+++..++. ...|....+.+..+. ...... ++..+++ +..++
T Consensus 2 ~~~~~i~a~~~~v~~~l~-d~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~v~~~~~-~~~~~ 74 (141)
T cd07812 2 EASIEIPAPPEAVWDLLS-DPERW-PEWSPG-LERVEVLGGGEGGVGARFVGGRKGGR-RLTLTS--EVTEVDP-PRPGR 74 (141)
T ss_pred cEEEEeCCCHHHHHHHHh-Chhhh-hhhCcc-cceEEEcCCCCccceeEEEEEecCCc-cccceE--EEEEecC-CCceE
Confidence 568999999999999998 99986 899997 7888877654 367777766665222 123566 7777777 67889
Q ss_pred EEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecC
Q 037096 86 YAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYR 127 (129)
Q Consensus 86 y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~ 127 (129)
|+...++.. ..+..++++.+.++++|.++|+.+|...+
T Consensus 75 ~~~~~~~~~----~~~~~~~~~~~~~~~~t~v~~~~~~~~~~ 112 (141)
T cd07812 75 FRVTGGGGG----VDGTGEWRLEPEGDGGTRVTYTVEYDPPG 112 (141)
T ss_pred EEEecCCCC----cceeEEEEEEECCCCcEEEEEEEEEecCC
Confidence 998876642 46778999999876579999999998754
No 13
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.19 E-value=8.5e-10 Score=77.75 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=81.6
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-C--CCCeEEEEEEcCCC-ceeEEEEeeeEeEEeccc
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDA-G--GAGSVEQINFAEGS-EYKYAKHKHQIDEVDEKN 81 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGd-g--~~Gsvr~~~~~~g~-~~~~~kE~~rl~~iD~~~ 81 (129)
++.+++|++|+++||+.+. |..++ |+|+|+ +.++++++.+ | .+|+.-.+.+...+ +..+ +- ++..+++ +
T Consensus 1 ~~~s~~I~ap~e~V~~~~~-d~~~~-~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w-~~--~it~~~p-~ 73 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHS-RPDNL-ERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRW-TT--EITEVEP-P 73 (137)
T ss_pred CeEEEEcCCCHHHHHHHHc-CcchH-HhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEE-EE--EEEEEcC-C
Confidence 4678999999999999998 99986 999997 6788887433 2 56888888877554 3333 33 5555554 5
Q ss_pred ceEEEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEec
Q 037096 82 LMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTY 126 (129)
Q Consensus 82 ~~~~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~ 126 (129)
+.+.+..+.|. +.++..+..+.|.++ +|.++++++|+.-
T Consensus 74 ~~f~~~~~~G~-----~~~w~h~~~f~~~~~-gT~vt~~v~~~~p 112 (137)
T cd07820 74 RRFVDEQVSGP-----FRSWRHTHRFEAIGG-GTLMTDRVEYRLP 112 (137)
T ss_pred CeEEEEeccCC-----chhCEEEEEEEECCC-ceEEEEEEEEeCC
Confidence 56888877664 456777888888765 6999999999974
No 14
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.17 E-value=2.1e-09 Score=77.64 Aligned_cols=110 Identities=8% Similarity=0.129 Sum_probs=80.7
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCC-CCCeEEEEEEcCCC-ceeEEEEeeeEeEEecccc
Q 037096 5 SSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAG-GAGSVEQINFAEGS-EYKYAKHKHQIDEVDEKNL 82 (129)
Q Consensus 5 ~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg-~~Gsvr~~~~~~g~-~~~~~kE~~rl~~iD~~~~ 82 (129)
..+.+|+|++||+++|+++. |..+. |.|+|. +.++++++.++ +.|+--.+.+..++ ...+..| + ..|...+
T Consensus 2 ~~~~si~i~a~~~~v~~lva-Dv~~~-P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~--~--~~~~~~~ 74 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTN-DIATW-PDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSE--R--TLDPVNR 74 (146)
T ss_pred cceeEEEEcCCHHHHHHHHH-hhhhh-hhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEE--E--EecCCCc
Confidence 46789999999999999998 99997 999996 78999887654 55543222332233 2234344 2 4788888
Q ss_pred eEEEE-EEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecC
Q 037096 83 MCKYA-MIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYR 127 (129)
Q Consensus 83 ~~~y~-iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~ 127 (129)
++.++ ..+| ++.....+.+|+|.++| |.+++..+|+-.+
T Consensus 75 ~i~~~~~~~~-----p~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~ 114 (146)
T cd08860 75 TVRARRVETG-----PFAYMNIRWEYTEVPEG-TRMRWVQDFEMKP 114 (146)
T ss_pred EEEEEEecCC-----CcceeeeeEEEEECCCC-EEEEEEEEEEECC
Confidence 88874 2221 37788899999998665 9999999999764
No 15
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.16 E-value=1.5e-09 Score=75.06 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=77.3
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceEE
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCK 85 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~~ 85 (129)
++.+++|+||+++||+++. |+.++ |+|.|. +..++.....| |+.+......++....+.. ++..+|+. +.+.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~-d~~~~-~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~--~i~~~~~~-~~i~ 73 (139)
T cd07814 2 ITIEREFDAPPELVWRALT-DPELL-AQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSG--EVLEVEPP-RRLV 73 (139)
T ss_pred eEEEEEecCCHHHHHHHcC-CHHHH-HhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccE--EEEEEcCC-CeEE
Confidence 6789999999999999998 99986 999996 22222211222 6666555443322234566 88888865 6789
Q ss_pred EEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEec
Q 037096 86 YAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTY 126 (129)
Q Consensus 86 y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~ 126 (129)
|+...++. + ..-....++++.|.+ ++|.++|+.+|...
T Consensus 74 ~~~~~~~~-~-~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~ 111 (139)
T cd07814 74 FTWAFSDE-T-PGPETTVTVTLEETG-GGTRLTLTHSGFPE 111 (139)
T ss_pred EEecccCC-C-CCCceEEEEEEEECC-CCEEEEEEEEccCh
Confidence 99887653 1 133567788899987 56999999998764
No 16
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.15 E-value=3.2e-09 Score=75.10 Aligned_cols=111 Identities=16% Similarity=0.129 Sum_probs=79.5
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceee---EEEE--cCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEe
Q 037096 4 SSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKS---LDRV--LDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVD 78 (129)
Q Consensus 4 ~~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s---~e~~--eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD 78 (129)
.+++.++.|++|+++||+++. |+.++ |+|.|.. .. +... +++.++|+...++...+.. .... ++..++
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~-D~~~~-~~W~p~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~--~~~~--~v~~~~ 74 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVN-DLKNW-PEWSPWE-KLDPDMKRTYSGPDSGVGASYSWEGNDKVG--EGEM--EITESV 74 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHh-CcccC-cccCchh-hcCcceEEEecCCCCCCCeEEEEecCCccc--ceEE--EEEecC
Confidence 368899999999999999998 99986 9999953 33 2221 2334789887777654211 2334 666665
Q ss_pred cccceEEEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEec
Q 037096 79 EKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTY 126 (129)
Q Consensus 79 ~~~~~~~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~ 126 (129)
+ ++.+.|++..++.+. .....++.+.|.+ ++|.++|+.+|+..
T Consensus 75 p-~~~i~~~~~~~~~~~---~~~~~~~~~~~~~-~gT~v~~~~~~~~~ 117 (150)
T cd07818 75 P-NERIEYELRFIKPFE---ATNDVEFTLEPVG-GGTKVTWGMSGELP 117 (150)
T ss_pred C-CcEEEEEEEecCCcc---ccceEEEEEEEcC-CceEEEEEEEecCC
Confidence 4 667899988654321 3667899999984 57999999999854
No 17
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.14 E-value=1.3e-09 Score=75.64 Aligned_cols=106 Identities=17% Similarity=0.194 Sum_probs=75.8
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceEE
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCK 85 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~~ 85 (129)
++.+++|++|+++||+++. |+.++ |+|.|. +.+++++.+. +.-..+.+..|... .... ++..+++ ++.+.
T Consensus 2 v~~~i~I~ap~e~V~~~~~-D~~~~-~~w~~~-~~~~~~~~~~---~~~~~~~~~~g~~~-~~~~--~v~~~~~-~~~i~ 71 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWR-DFENL-PRFMSH-VESVEQLDDT---RSHWKAKGPAGLSV-EWDA--EITEQVP-NERIA 71 (139)
T ss_pred eeEEEEeCCCHHHHHHHHh-Chhhh-HHHhhh-hcEEEEcCCC---ceEEEEecCCCCcE-EEEE--EEeccCC-CCEEE
Confidence 6789999999999999998 99986 999996 7899876542 22233334334333 3344 5554444 55689
Q ss_pred EEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecC
Q 037096 86 YAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYR 127 (129)
Q Consensus 86 y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~ 127 (129)
|....|. + .+..++.+.|.++++|.+++++.|++.+
T Consensus 72 ~~~~~~~-----~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~ 107 (139)
T cd07817 72 WRSVEGA-----D-PNAGSVRFRPAPGRGTRVTLTIEYEPPG 107 (139)
T ss_pred EEECCCC-----C-CcceEEEEEECCCCCeEEEEEEEEECCc
Confidence 9876543 2 4557888999776789999999999764
No 18
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.13 E-value=2.5e-09 Score=74.38 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=74.7
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEE--EEeeeEeEEecccc
Q 037096 5 SSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYA--KHKHQIDEVDEKNL 82 (129)
Q Consensus 5 ~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~--kE~~rl~~iD~~~~ 82 (129)
.++.++.+++||+++|+++. |+.++ |+|+|. +.+++.++++. ......+.+ +...... .- ++..+|+. +
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~-D~~~~-~~w~p~-~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~-~ 72 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALN-DPEVL-ARCIPG-CESLEKIGPNE-YEATVKLKV--GPVKGTFKGKV--ELSDLDPP-E 72 (144)
T ss_pred eeeeEEEecCCHHHHHHHhc-CHHHH-Hhhccc-hhhccccCCCe-EEEEEEEEE--ccEEEEEEEEE--EEEecCCC-c
Confidence 47889999999999999998 99986 899997 67888665432 111112222 2111112 33 55544543 5
Q ss_pred eEEEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecC
Q 037096 83 MCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYR 127 (129)
Q Consensus 83 ~~~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~ 127 (129)
.+.++....+.. ....+..++++.|. +++|.++|+++|+..+
T Consensus 73 ~~~~~~~~~~~~--~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g 114 (144)
T cd05018 73 SYTITGEGKGGA--GFVKGTARVTLEPD-GGGTRLTYTADAQVGG 114 (144)
T ss_pred EEEEEEEEcCCC--ceEEEEEEEEEEec-CCcEEEEEEEEEEEcc
Confidence 667776543321 35688999999998 5679999999999654
No 19
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.10 E-value=4.5e-09 Score=73.73 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=76.2
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC--CCCCeEEEEEEcC-CCceeEEEEeeeEeEEecccc
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDA--GGAGSVEQINFAE-GSEYKYAKHKHQIDEVDEKNL 82 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGd--g~~Gsvr~~~~~~-g~~~~~~kE~~rl~~iD~~~~ 82 (129)
++.++.|+|||++||+++. |+.++ |+|.|.... .....++ -++|+...+.... |++. .+.. ++..+++.+
T Consensus 2 i~~~~~i~ap~e~Vw~~l~-d~~~~-~~W~~~~~~-~~~~~~~~~~~~G~~~~~~~~~~g~~~-~~~~--~v~~~~p~~- 74 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLA-DPRRH-PEIDGSGTV-REAIDGPRILAVGDVFRMAMRLDGGPY-RITN--HVVAFEENR- 74 (144)
T ss_pred eEEEEEEeCCHHHHHHHHh-Ccccc-ceeCCCCcc-ccccCCCccCCCCCEEEEEEEcCCCce-EEEE--EEEEECCCC-
Confidence 5789999999999999998 99986 999985322 2222333 3788887776653 3433 3455 677777654
Q ss_pred eEEEEEE-ecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecC
Q 037096 83 MCKYAMI-EGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYR 127 (129)
Q Consensus 83 ~~~y~ii-eg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~ 127 (129)
.++|+.. .+.. ......++.+.|.++|+|.++++..|...+
T Consensus 75 ~l~~~~~~~~~~----~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~ 116 (144)
T cd07825 75 LIAWRPGPAGQE----PGGHRWRWELEPIGPGRTRVTETYDWSAVT 116 (144)
T ss_pred EEEEEccCCCCC----CCceeEEEEEEECCCCcEEEEEEEeccCCh
Confidence 5889853 2221 223456788889877789999998887553
No 20
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.04 E-value=2.1e-08 Score=71.36 Aligned_cols=107 Identities=15% Similarity=0.251 Sum_probs=74.5
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEc-C-CCCCCeEEEEEEcCCCce-eEEEEeeeEeEEecccc
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVL-D-AGGAGSVEQINFAEGSEY-KYAKHKHQIDEVDEKNL 82 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~e-G-dg~~Gsvr~~~~~~g~~~-~~~kE~~rl~~iD~~~~ 82 (129)
++.+..|++||++||+++. |+.++ |+|.|. +.+++.++ | +.++|+.-+.+.....+. ....- ++..+ +..+
T Consensus 3 ~~~~~~i~ap~e~Vw~~~t-D~~~~-~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~v~~~-~p~~ 76 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLV-DAESW-PDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFEL--RVTRI-EPLS 76 (146)
T ss_pred ceEEEEecCCHHHHHHHHh-Chhhc-chhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEE--EEEee-cCCc
Confidence 5678899999999999998 99986 999996 78998877 3 337787655443322111 12233 44444 4566
Q ss_pred eEEEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEec
Q 037096 83 MCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTY 126 (129)
Q Consensus 83 ~~~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~ 126 (129)
.+.|+. +|+. . ...++++.|.++ +|.++++.+++..
T Consensus 77 ~~~~~~-~g~~-----~-~~~~~~~~~~~~-gt~vt~~~~~~~~ 112 (146)
T cd07824 77 LLEVRA-SGDL-----E-GVGRWTLAPDGS-GTVVRYDWEVRTT 112 (146)
T ss_pred EEEEEE-EEee-----e-EEEEEEEEEcCC-CEEEEEEEEEEcC
Confidence 788885 6653 1 257888899654 6999999999864
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.92 E-value=4.3e-08 Score=67.69 Aligned_cols=100 Identities=19% Similarity=0.361 Sum_probs=70.6
Q ss_pred ecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCC-ceeEEEEeeeEeEEecccceEEEEEEe
Q 037096 12 SAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGS-EYKYAKHKHQIDEVDEKNLMCKYAMIE 90 (129)
Q Consensus 12 i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~-~~~~~kE~~rl~~iD~~~~~~~y~iie 90 (129)
|+|||++||+++. |+.++ |.|+|. ++++++++.++. +..-.+....++ +..+ .. ++... ...+ +.+..++
T Consensus 1 V~ap~~~V~~~i~-D~e~~-~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~-~~--~~~~~-~~~~-~~~~~~~ 71 (130)
T PF03364_consen 1 VNAPPEEVWSVIT-DYENY-PRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSW-TS--RVTED-PPER-IRFEQIS 71 (130)
T ss_dssp ESS-HHHHHHHHT-TGGGH-HHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEE-EE--EEEEE-CTTT-EEEESSE
T ss_pred CCCCHHHHHHHHH-HHHHH-HHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEE-EE--EEEEE-Eeee-eeeeecC
Confidence 6899999999998 99986 999996 889999888654 433356665443 3334 44 54433 3333 6777766
Q ss_pred cCCCccCeeEEEEEEEEEEcCC--CccEEEEEEEEEe
Q 037096 91 GDALIDSLSKQLMRSNFEAAGD--GGCICKTTINYHT 125 (129)
Q Consensus 91 g~~l~~~~~~~~~~~~v~p~~~--g~s~v~W~~~y~~ 125 (129)
|+ ++.+..+.++.|.++ |+|.++++.+|+.
T Consensus 72 g~-----~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~ 103 (130)
T PF03364_consen 72 GP-----FKSFEGSWRFEPLGGNEGGTRTRVTYDYEV 103 (130)
T ss_dssp TT-----EEEEEEEEEEEEETTECCEEEEEEEEEEEE
T ss_pred CC-----chhcEEEEEEEECCCCcCCCEEEEEEEEEE
Confidence 64 789999999999875 3566777777665
No 22
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.92 E-value=4.2e-08 Score=69.74 Aligned_cols=115 Identities=14% Similarity=0.114 Sum_probs=70.3
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceEE
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCK 85 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~~ 85 (129)
++.++++++||+++|+++. |+.++ +.|.|+ +++++.. |++.. .-.+++.-+.-....+=.-++..+++..+++.
T Consensus 1 ~~~~~~v~a~pe~vw~~l~-D~~~~-~~~~pg-~~~~~~~-~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (146)
T cd07823 1 LENEFTVPAPPDRVWALLL-DIERV-APCLPG-ASLTEVE-GDDEY--KGTVKVKLGPISASFKGTARLLEDDEAARRAV 74 (146)
T ss_pred CCceEEecCCHHHHHHHhc-CHHHH-HhcCCC-ceecccc-CCCeE--EEEEEEEEccEEEEEEEEEEEEeccCCCcEEE
Confidence 3578999999999999998 99986 899997 7888754 32221 12233332221111221014455555678887
Q ss_pred EEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecC
Q 037096 86 YAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYR 127 (129)
Q Consensus 86 y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~ 127 (129)
++.-..+.-...--....++++.| .+++|.++|+++++-.|
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g 115 (146)
T cd07823 75 LEATGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTG 115 (146)
T ss_pred EEEEEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEee
Confidence 775421111001114667888888 44679999999987543
No 23
>PRK10724 hypothetical protein; Provisional
Probab=98.91 E-value=5.3e-08 Score=71.42 Aligned_cols=110 Identities=10% Similarity=0.190 Sum_probs=81.8
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceE
Q 037096 5 SSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMC 84 (129)
Q Consensus 5 ~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~ 84 (129)
.+..++.+++||+++|+++. |..+. |+|+|. .+++++++-++. +.+..++.+-++-...... +.. +++. +++
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~-Dve~y-p~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~s--rv~-~~~~-~~I 87 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVN-DVQSY-PQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTT--RNQ-LTSN-QSI 87 (158)
T ss_pred eEEEEEEecCCHHHHHHHHH-HHHHH-HHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEE--EEE-ecCC-CEE
Confidence 68889999999999999998 99986 999996 678887765432 2344455543432233334 443 3443 479
Q ss_pred EEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecC
Q 037096 85 KYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYR 127 (129)
Q Consensus 85 ~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~ 127 (129)
.+.+++|+ ++++...++|.|.++++|.|+..++|+..+
T Consensus 88 ~~~~~~Gp-----F~~l~g~W~f~p~~~~~t~V~~~l~fef~s 125 (158)
T PRK10724 88 LMQLVDGP-----FKKLIGGWKFTPLSQEACRIEFHLDFEFTN 125 (158)
T ss_pred EEEecCCC-----hhhccceEEEEECCCCCEEEEEEEEEEEch
Confidence 99999874 578889999999887789999999998654
No 24
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.61 E-value=1.1e-06 Score=64.01 Aligned_cols=110 Identities=14% Similarity=0.184 Sum_probs=77.3
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceE
Q 037096 5 SSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMC 84 (129)
Q Consensus 5 ~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~ 84 (129)
.++-+..|++|++++|+.+. |+..+ ...+|+ ++|++ .+||.-. -.+.+.-|.-...++=+-++..+|+..+++
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~-dpe~~-a~ciPG-~qs~e-~~g~e~~---~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~ 74 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLN-DPEQV-AACIPG-VQSVE-TNGDEYT---AKVKLKIGPLKGTFSGRVRFVNVDEPPRSI 74 (146)
T ss_pred cccceEEecCCHHHHHHHhc-CHHHH-HhhcCC-cceee-ecCCeEE---EEEEEeecceeEEEEEEEEEccccCCCcEE
Confidence 36778999999999999998 99986 589998 89999 5676311 122222221011222222677788999998
Q ss_pred EEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEE
Q 037096 85 KYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYH 124 (129)
Q Consensus 85 ~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~ 124 (129)
+...-.|.. . ..-..++.++++|.+++ |++.|.+.-+
T Consensus 75 ~i~g~G~~~-~-g~~~~~~~v~l~~~g~g-t~v~w~~~~~ 111 (146)
T COG3427 75 TINGSGGGA-A-GFADGTVDVQLEPSGEG-TRVNWFADAN 111 (146)
T ss_pred EEEeecccc-c-ceeeeeeEEEEEEcCCC-cEEEEEEEcc
Confidence 887754332 2 56788889999998877 9999998754
No 25
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.47 E-value=7.7e-06 Score=58.22 Aligned_cols=107 Identities=15% Similarity=0.224 Sum_probs=66.2
Q ss_pred EEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCC-ceeE-EEEeeeEeEEecccceEEE
Q 037096 9 ELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGS-EYKY-AKHKHQIDEVDEKNLMCKY 86 (129)
Q Consensus 9 ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~-~~~~-~kE~~rl~~iD~~~~~~~y 86 (129)
+.+|++|++++|++|. |..++ -+.+|+ +++++.+. +.-.+. ++..-|. +.++ .+= ++..+|+.++.. .
T Consensus 2 s~~v~a~~~~vw~~l~-D~~~l-~~ciPG-~~~~e~~~-~~~~~~---~~v~vG~i~~~~~g~~--~~~~~~~~~~~~-~ 71 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLS-DPENL-ARCIPG-VESIEKVG-DEYKGK---VKVKVGPIKGTFDGEV--RITEIDPPESYT-L 71 (140)
T ss_dssp EEEECS-HHHHHHHHT--HHHH-HHHSTT-EEEEEEEC-TEEEEE---EEEESCCCEEEEEEEE--EEEEEETTTEEE-E
T ss_pred cEEecCCHHHHHHHhc-CHHHH-HhhCCC-cEEeeecC-cEEEEE---EEEEeccEEEEEEEEE--EEEEcCCCcceE-e
Confidence 6789999999999998 99987 589998 79998765 421111 2222221 1111 222 566777777763 3
Q ss_pred EEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecC
Q 037096 87 AMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYR 127 (129)
Q Consensus 87 ~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~ 127 (129)
++-..+.. .-.+..+.+++...++++|.+.|+++++--|
T Consensus 72 ~~~g~g~~--~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G 110 (140)
T PF06240_consen 72 EFEGRGRG--GGSSASANITLSLEDDGGTRVTWSADVEVGG 110 (140)
T ss_dssp EEEEEECT--CCEEEEEEEEEEECCCTCEEEEEEEEEEEEC
T ss_pred eeeccCCc--cceEEEEEEEEEcCCCCCcEEEEEEEEEEcc
Confidence 33222222 2346667777777666569999999998543
No 26
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.42 E-value=3.1e-06 Score=63.68 Aligned_cols=109 Identities=15% Similarity=0.154 Sum_probs=84.4
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEc--CCCceeEEEEeeeEeEEecc
Q 037096 3 VSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFA--EGSEYKYAKHKHQIDEVDEK 80 (129)
Q Consensus 3 ~~~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~--~g~~~~~~kE~~rl~~iD~~ 80 (129)
....+.+++|+.|++++|..++ |+.++ |.|+- ++.|+++.+..- -.|+.. .|..+++-.| |. -|..
T Consensus 69 ~i~v~~~V~I~kPae~vy~~W~-dLe~l-P~~Mk-hl~SVkVlddkr-----SrW~~~ap~g~~v~Wea~---it-~d~~ 136 (217)
T COG5637 69 PIEVEVQVTIDKPAEQVYAYWR-DLENL-PLWMK-HLDSVKVLDDKR-----SRWKANAPLGLEVEWEAE---IT-KDIP 136 (217)
T ss_pred ceEEEEEEEeCChHHHHHHHHH-hhhhh-hHHHH-hhceeeccCCCc-----cceeEcCCCCceEEEeeh---hh-ccCC
Confidence 3567899999999999999999 99996 99996 599999876642 246655 3445566444 43 6889
Q ss_pred cceEEEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecCC
Q 037096 81 NLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYRQ 128 (129)
Q Consensus 81 ~~~~~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~~ 128 (129)
+..|.|.-++|.-+++. ..++|.+..+..|+|+.++.|-+-|+
T Consensus 137 ~e~I~W~Sl~Ga~v~Ns-----G~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 137 GERIQWESLPGARVENS-----GAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred CcEEeeecCCCCcCCCC-----ccEEeeeCCCCceEEEEEEEecCCcc
Confidence 99999999999655432 46788888777789999999987554
No 27
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.38 E-value=9.5e-06 Score=58.60 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=68.1
Q ss_pred ccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEeccc
Q 037096 2 GVSSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKN 81 (129)
Q Consensus 2 ~~~~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~ 81 (129)
|..++..++.|++|+++||+++. |+.++ ++|.|.. ..+-.+|....+.+...+. ....- ++.++|+.
T Consensus 9 ~~~~i~~~~~i~Ap~e~Vw~alt-dp~~~-~~W~~~~-------~~~~~~G~~~~~~~~~~~~-~~~~~--~v~e~~p~- 75 (157)
T cd08899 9 GGATLRFERLLPAPIEDVWAALT-DPERL-ARWFAPG-------TGDLRVGGRVEFVMDDEEG-PNATG--TILACEPP- 75 (157)
T ss_pred CCeEEEEEEecCCCHHHHHHHHc-CHHHH-HhhcCCC-------CCCcccCceEEEEecCCCC-Cccce--EEEEEcCC-
Confidence 34578999999999999999998 99975 8999842 1233456555566544211 12344 67666665
Q ss_pred ceEEEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEe
Q 037096 82 LMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHT 125 (129)
Q Consensus 82 ~~~~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~ 125 (129)
+.+.|+...++ . ....+++|.+.+ ++|.++.+.++.+
T Consensus 76 ~~l~~~~~~~~-~-----~~~~~~~l~~~~-~gT~v~~~~~~~~ 112 (157)
T cd08899 76 RLLAFTWGEGG-G-----ESEVRFELAPEG-DGTRLTLTHRLLD 112 (157)
T ss_pred cEEEEEecCCC-C-----CceEEEEEEEcC-CCEEEEEEEeccC
Confidence 56677765433 1 224577777765 5688887776654
No 28
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.17 E-value=3.8e-05 Score=53.46 Aligned_cols=106 Identities=15% Similarity=0.162 Sum_probs=62.1
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceE
Q 037096 5 SSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMC 84 (129)
Q Consensus 5 ~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~ 84 (129)
.++.+++|+||+++||+++. |+..+ ++|.|... .....|.+..| .+.+..... ....= ++..+++ ++.+
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~t-d~~~~-~~W~~~~~--~~~~~~~~~~g---~~~~~~~~~-~~~~~--~i~~~~p-~~~l 70 (145)
T cd08898 2 RIERTILIDAPRERVWRALT-DPEHF-GQWFGVKL--GPFVVGEGATG---EITYPGYEH-GVFPV--TVVEVDP-PRRF 70 (145)
T ss_pred eeEEEEEecCCHHHHHHHhc-Chhhh-hhcccccC--CCcccCCccee---EEecCCCCc-cceEE--EEEEeCC-CcEE
Confidence 47889999999999999998 99875 89998642 22212222222 344433210 11223 5555554 4555
Q ss_pred EEEEEecC---CCc-cCeeEEEEEEEEEEcCCCccEEEEEEE
Q 037096 85 KYAMIEGD---ALI-DSLSKQLMRSNFEAAGDGGCICKTTIN 122 (129)
Q Consensus 85 ~y~iieg~---~l~-~~~~~~~~~~~v~p~~~g~s~v~W~~~ 122 (129)
.|+..... ... ..-.....++++.+.+ ++|.++++-.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~ 111 (145)
T cd08898 71 SFRWHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTES 111 (145)
T ss_pred EEEecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEc
Confidence 67754222 000 0112345788888876 4689998865
No 29
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.15 E-value=9.6e-05 Score=50.77 Aligned_cols=106 Identities=12% Similarity=-0.030 Sum_probs=62.3
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceE
Q 037096 5 SSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMC 84 (129)
Q Consensus 5 ~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~ 84 (129)
+++.++.|+|||++||+++. |...+ +.|.+... .+++-.+|.--.+....... ..+.= ++.+++ .++.+
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~t-d~~~~-~~W~~~~~-----~~~~~~~G~~~~~~~~~~~~-~~~~~--~v~~~~-~~~~l 69 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALT-DPEFT-RQYWGGTT-----VESDWKVGSAFEYRRGDDGT-VDVEG--EVLESD-PPRRL 69 (136)
T ss_pred CeEEEEEecCCHHHHHHHHc-Cchhh-hheecccc-----cccCCcCCCeEEEEeCCCcc-cccce--EEEEec-CCCeE
Confidence 47889999999999999998 99875 89998622 12333455533344433111 11222 555565 55556
Q ss_pred EEEEEecCCCc-cCeeEEEEEEEEEEcCCCccEEEEEEE
Q 037096 85 KYAMIEGDALI-DSLSKQLMRSNFEAAGDGGCICKTTIN 122 (129)
Q Consensus 85 ~y~iieg~~l~-~~~~~~~~~~~v~p~~~g~s~v~W~~~ 122 (129)
.|+...++..+ ..-.....++.+.|.++ +|.++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~ 107 (136)
T cd08893 70 VHTWRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHD 107 (136)
T ss_pred EEEEecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEec
Confidence 67654332210 01234566777888654 576665544
No 30
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.07 E-value=0.0003 Score=49.62 Aligned_cols=109 Identities=18% Similarity=0.097 Sum_probs=61.6
Q ss_pred EEEEEEecCCHHHHHHHhhhcccccccccccc-ceeeEEEEcCCCCCCeEEEEEEc-CCCceeEEEEeeeEeEEecccce
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQ-FIKSLDRVLDAGGAGSVEQINFA-EGSEYKYAKHKHQIDEVDEKNLM 83 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~-~v~s~e~~eGdg~~Gsvr~~~~~-~g~~~~~~kE~~rl~~iD~~~~~ 83 (129)
+..+..++||+++||+++. |...+ .+|+.+ .--.+...+.|-.+|..-.+.+. .++..-...= ++.++|+.++
T Consensus 2 ~~i~r~~~ap~e~Vw~a~t-dp~~l-~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g--~~~~~~p~~~- 76 (143)
T cd08900 2 FTLERTYPAPPERVFAAWS-DPAAR-ARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEA--RYHDIVPDER- 76 (143)
T ss_pred EEEEEEeCCCHHHHHHHhc-CHHHH-HhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeE--EEEEecCCce-
Confidence 5677889999999999998 88864 789854 11122222333334444333332 3332112222 5666765443
Q ss_pred EEEEE--EecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEE
Q 037096 84 CKYAM--IEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINY 123 (129)
Q Consensus 84 ~~y~i--ieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y 123 (129)
+.|+- -.++.. ...-..++.+.|.+ ++|.++.+-.+
T Consensus 77 l~~t~~~~~~~~~---~~~s~v~~~l~~~~-~gT~l~~~~~~ 114 (143)
T cd08900 77 IVYTYTMHIGGTL---LSASLATVEFAPEG-GGTRLTLTEQG 114 (143)
T ss_pred EEEEEeeccCCcc---ccceEEEEEEEECC-CCEEEEEEEEE
Confidence 44553 222221 11234788888875 56888877654
No 31
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.04 E-value=0.00025 Score=49.85 Aligned_cols=106 Identities=10% Similarity=-0.002 Sum_probs=61.9
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccc-cceeeEEEEcCCCCCCeEEEEEE-cCCCceeEEEEeeeEeEEecccce
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLP-QFIKSLDRVLDAGGAGSVEQINF-AEGSEYKYAKHKHQIDEVDEKNLM 83 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P-~~v~s~e~~eGdg~~Gsvr~~~~-~~g~~~~~~kE~~rl~~iD~~~~~ 83 (129)
+..+..|+||+++||+++. |...+ .+|.+ ..+.... .+.|..+|..-.+.+ .+++..-...= ++.++++. ++
T Consensus 2 l~~~r~i~ap~e~Vw~a~t-~p~~l-~~W~~p~~~~~~~-~~~d~~~GG~~~~~~~~~~g~~~~~~g--~v~e~~p~-~~ 75 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWT-DPEHL-AQWWGPEGFTNTT-HEFDLRPGGRWRFVMHGPDGTDYPNRI--VFLEIEPP-ER 75 (139)
T ss_pred EEEEEEeCCCHHHHHHHhC-CHHHH-hhccCcCCCcceE-EEEEecCCCEEEEEEECCCCCEecceE--EEEEEcCC-CE
Confidence 5678999999999999998 88765 78874 2222111 222333343333333 33332111122 56667654 45
Q ss_pred EEEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEE
Q 037096 84 CKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYH 124 (129)
Q Consensus 84 ~~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~ 124 (129)
+.|+.-.++ . ....++++.|.+ ++|.++.+..|.
T Consensus 76 l~~t~~~~~----~--~~~v~~~~~~~~-~gT~ltl~~~~~ 109 (139)
T cd08894 76 IVYDHGSGP----P--RFRLTVTFEEQG-GKTRLTWRQVFP 109 (139)
T ss_pred EEEEeccCC----C--cEEEEEEEEECC-CCEEEEEEEEcC
Confidence 567763321 1 234788888875 678888887664
No 32
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.04 E-value=0.00034 Score=49.58 Aligned_cols=110 Identities=10% Similarity=-0.026 Sum_probs=60.0
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEE-cCCCceeEEEEeeeEeEEecccceE
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINF-AEGSEYKYAKHKHQIDEVDEKNLMC 84 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~-~~g~~~~~~kE~~rl~~iD~~~~~~ 84 (129)
+..+..|+||+++||+++. |...+ .+|.+..=-.+...+.|-.+|..-.+.+ .+++..-...= ++.++|+.++ +
T Consensus 2 l~i~r~i~a~~e~Vw~a~t-~pe~~-~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g--~v~~i~p~~~-l 76 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWT-EPELL-KQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEEFPNPG--CFLEVVPGER-L 76 (146)
T ss_pred eEEEEEeCCCHHHHHHHcC-CHHHH-hccCCCCCccceEEEEEeecCcEEEEEEECCCCCEecceE--EEEEEeCCCE-E
Confidence 5678899999999999998 88765 7887642001111122223333333433 23332112233 6667776543 3
Q ss_pred EEE--EEec-CCCccCeeEEEEEEEEEEcCCCccEEEEEEEE
Q 037096 85 KYA--MIEG-DALIDSLSKQLMRSNFEAAGDGGCICKTTINY 123 (129)
Q Consensus 85 ~y~--iieg-~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y 123 (129)
.|+ +.++ ++-..+ .-..+++++|.+ ++|.++.+..+
T Consensus 77 ~~t~~~~~~~~~~~~~--~~~v~~~~~~~~-~gT~Ltl~~~~ 115 (146)
T cd08896 77 VFTDALTPGWRPAEKP--FMTAIITFEDEG-GGTRYTARARH 115 (146)
T ss_pred EEEEeecCCcCCCCCC--cEEEEEEEEecC-CcEEEEEEEEe
Confidence 454 3332 111111 135678888865 56888876554
No 33
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.03 E-value=0.00039 Score=49.27 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=62.3
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEE--EEcC------CCceeEEEEeeeEeE
Q 037096 5 SSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQI--NFAE------GSEYKYAKHKHQIDE 76 (129)
Q Consensus 5 ~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~--~~~~------g~~~~~~kE~~rl~~ 76 (129)
++..+..|+||+++||+++. |...+ .+|.+..=-.+...+.+-.+|-.-.+ ++.+ .+......= ++.+
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~t-d~~~~-~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g--~v~~ 76 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFL-DPDAL-AKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGG--RFLE 76 (146)
T ss_pred CEEEEEEECCCHHHHHHHHc-CHHHH-hhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEE--EEEE
Confidence 46778899999999999998 98875 79886321112112223223333233 3333 122112233 5667
Q ss_pred EecccceEEEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEE
Q 037096 77 VDEKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINY 123 (129)
Q Consensus 77 iD~~~~~~~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y 123 (129)
+++.+ ++.|+..-.+... + .....++.+.+.+ ++|.++++...
T Consensus 77 v~p~~-~i~~~~~~~~~~~-~-~~~~v~~~~~~~~-~~T~lt~~~~~ 119 (146)
T cd08895 77 LVPNE-RIVYTDVFDDPSL-S-GEMTMTWTLSPVS-GGTDVTIVQSG 119 (146)
T ss_pred EcCCC-EEEEEEEecCCCC-C-ceEEEEEEEEecC-CCEEEEEEEeC
Confidence 76655 4456542122111 1 2346788888875 56888887754
No 34
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.00 E-value=0.00038 Score=49.29 Aligned_cols=109 Identities=14% Similarity=0.015 Sum_probs=64.3
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEc-CCCceeEEEEeeeEeEEeccc-ce
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFA-EGSEYKYAKHKHQIDEVDEKN-LM 83 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~-~g~~~~~~kE~~rl~~iD~~~-~~ 83 (129)
++.+..++|||++||+++- |...+ .+|.+..--.+...+.|-.+|..-.+.+. +++....+.= ++.++|+.+ ..
T Consensus 2 l~i~r~~~ap~e~Vw~a~T-dpe~l-~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g--~~~ei~p~~~l~ 77 (142)
T cd07826 2 IVITREFDAPRELVFRAHT-DPELV-KRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHG--VYHEVTPPERIV 77 (142)
T ss_pred EEEEEEECCCHHHHHHHhC-CHHHH-hhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceE--EEEEEcCCCEEE
Confidence 6778899999999999998 88865 78886542223333444445554444443 2332112223 556676543 34
Q ss_pred EEEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEE
Q 037096 84 CKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYH 124 (129)
Q Consensus 84 ~~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~ 124 (129)
+++.. ++... .....++++.+.+ |+|.++.+..|.
T Consensus 78 ~t~~~-~~~~~----~~s~v~~~l~~~~-~gT~l~l~~~~~ 112 (142)
T cd07826 78 QTEEF-EGLPD----GVALETVTFTELG-GRTRLTATSRYP 112 (142)
T ss_pred EEeEe-cCCCC----CceEEEEEEEECC-CCEEEEEEEEeC
Confidence 44443 33221 2345688888875 678888876663
No 35
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.00 E-value=0.00074 Score=49.90 Aligned_cols=120 Identities=9% Similarity=0.006 Sum_probs=74.3
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCc---eeEEEEeeeEeEEecc
Q 037096 4 SSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSE---YKYAKHKHQIDEVDEK 80 (129)
Q Consensus 4 ~~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~---~~~~kE~~rl~~iD~~ 80 (129)
..+..+..+++||+++|+++. |.... |+|.|. +.++++++-.+.--.+-...+....+ ..++-. +-...+.+
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~-d~e~~-~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~--~~~~~~~~ 115 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLR-DTESY-PQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLR--STTEQDAD 115 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHh-hhHhH-HHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEE--EEEEEcCC
Confidence 467788899999999999988 99975 999995 88999888654212233333332221 122222 11122222
Q ss_pred cceEEEEEEecCC-Cc--c---CeeEEEEEEEEEEcCCCccEEEEEEEEEecCC
Q 037096 81 NLMCKYAMIEGDA-LI--D---SLSKQLMRSNFEAAGDGGCICKTTINYHTYRQ 128 (129)
Q Consensus 81 ~~~~~y~iieg~~-l~--~---~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~~ 128 (129)
+..+...+..++. .+ . ....+...+.++|.++++|.++....+++.+.
T Consensus 116 ~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~ 169 (195)
T cd08876 116 DGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS 169 (195)
T ss_pred CCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC
Confidence 3333333333321 11 0 14566677888998888899999999888764
No 36
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=97.76 E-value=0.00027 Score=51.36 Aligned_cols=111 Identities=9% Similarity=0.142 Sum_probs=80.3
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceE
Q 037096 5 SSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMC 84 (129)
Q Consensus 5 ~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~ 84 (129)
.++.+.-+.-+|+++|+++. |-... |..+|- -.+..+.+.++ ..-+-.++.+-.+=..+..- |.. .++..++|
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~-dV~~Y-P~FlP~-C~~s~v~~~~~-~~l~A~l~V~~k~i~e~F~T--rv~-~~~~~~~I 75 (146)
T COG2867 3 QIERTALVPYSASQMFDLVN-DVESY-PEFLPW-CSASRVLERNE-RELIAELDVGFKGIRETFTT--RVT-LKPTARSI 75 (146)
T ss_pred eeEeeeeccCCHHHHHHHHH-HHHhC-chhccc-cccceEeccCc-ceeEEEEEEEhhheeeeeee--eee-ecCchhhh
Confidence 57788889999999999988 99986 999994 77888777764 22444455543431122233 433 44555577
Q ss_pred EEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecC
Q 037096 85 KYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYR 127 (129)
Q Consensus 85 ~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~ 127 (129)
.-++++|+ ++....++++.|-++++|.|+..++|+-.+
T Consensus 76 ~~~l~~GP-----Fk~L~~~W~F~pl~~~~ckV~f~ldfeF~s 113 (146)
T COG2867 76 DMKLIDGP-----FKYLKGGWQFTPLSEDACKVEFFLDFEFKS 113 (146)
T ss_pred hhhhhcCC-----hhhhcCceEEEECCCCceEEEEEEEeeehh
Confidence 77777765 566778999999877899999999999764
No 37
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.75 E-value=0.00067 Score=47.31 Aligned_cols=100 Identities=13% Similarity=0.125 Sum_probs=58.2
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceee--EEEEcCCCCCCeEEEEEEc-CCCce-eEEEEeeeEeEEecc
Q 037096 5 SSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKS--LDRVLDAGGAGSVEQINFA-EGSEY-KYAKHKHQIDEVDEK 80 (129)
Q Consensus 5 ~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s--~e~~eGdg~~Gsvr~~~~~-~g~~~-~~~kE~~rl~~iD~~ 80 (129)
|++.++.++||+++||+++. |...+ .+|++.. .. +...+.|-.+|..-.+.+. .++.. ..+.= ++.++++
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~t-d~e~~-~~W~~~~-~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g--~~~ei~p- 74 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWT-TPEHI-TKWNFAS-DDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEG--TYTEVEP- 74 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhC-CHHHH-hhCCCCC-CCcccceeeecCCcCCEEEEEEEcCCCCcccccce--EEEEECC-
Confidence 47889999999999999998 88864 8996431 11 1112234345544344332 22211 11222 4555554
Q ss_pred cceEEEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEE
Q 037096 81 NLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTT 120 (129)
Q Consensus 81 ~~~~~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~ 120 (129)
++++.|+..++ ...++.++|.+ ++|.++-+
T Consensus 75 ~~~l~~~~~~~---------~~v~~~l~~~~-~gT~l~l~ 104 (133)
T cd08897 75 HKLIEYTMEDG---------REVEVEFTEEG-DGTKVVET 104 (133)
T ss_pred CCEEEEEcCCC---------CEEEEEEEECC-CCEEEEEE
Confidence 45567875321 24688888875 56877654
No 38
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.64 E-value=0.0033 Score=44.59 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=58.1
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccce-------eeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEe
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFI-------KSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVD 78 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v-------~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD 78 (129)
+..++.|+||+++||+++. | . +.+|.+..- ..+++ |-.+|..-... ..++.. +..= ++.++|
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t-~-~--l~~W~~p~~~~~~~~~~~~~~---d~~~GG~~~~~-~~~g~~-~~~g--~v~~v~ 70 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFT-E-G--FGAWWPPEYHFVFSPGAEVVF---EPRAGGRWYEI-GEDGTE-CEWG--TVLAWE 70 (149)
T ss_pred eEEEEEecCCHHHHHHHHH-h-c--hhhccCCCcccccCCCccEEE---cccCCcEEEEe-cCCCcE-eceE--EEEEEc
Confidence 5789999999999999998 7 2 467865421 23332 11232222222 223321 2223 566677
Q ss_pred cccceEEEEEE-ec--CCCccCeeEEEEEEEEEEcCCCccEEEEEEEEE
Q 037096 79 EKNLMCKYAMI-EG--DALIDSLSKQLMRSNFEAAGDGGCICKTTINYH 124 (129)
Q Consensus 79 ~~~~~~~y~ii-eg--~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~ 124 (129)
+.++ +.|+-. .. +....+. -..++.++|.++++|.++.+-.+.
T Consensus 71 p~~~-l~~tw~~~~~~~~~~~~~--t~vt~~l~~~~~~gT~ltl~~~~~ 116 (149)
T cd08891 71 PPSR-LVFTWQINADWRPDPDKA--SEVEVRFEAVGAEGTRVELEHRGF 116 (149)
T ss_pred CCCE-EEEEeccCCCcCcCCCCc--eEEEEEEEECCCCCeEEEEEEecc
Confidence 6543 345533 11 1111112 257888899764678888776654
No 39
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.63 E-value=0.0022 Score=44.98 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=59.3
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceEE
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCK 85 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~~ 85 (129)
+..++.|+||+++||+++. |...+ .+|.+. -.+.++.. |..-.+.|...++. +.= ++.++++ .+.+.
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t-~p~~l-~~W~~~-~~~~~~~~-----Gg~~~~~~~~~~~~--~~g--~~~~~~p-~~~l~ 68 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFV-DPEIT-TKFWFT-GSSGRLEE-----GKTVTWDWEMYGAS--VPV--NVLEIEP-NKRIV 68 (136)
T ss_pred eeEEEEecCCHHHHHHHhc-CHHHh-cccccc-CCCccccC-----CCEEEEEEEccCCc--eEE--EEEEEcC-CCEEE
Confidence 4678999999999999998 88765 787543 23444433 33334666543321 112 4455644 45566
Q ss_pred EEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEE
Q 037096 86 YAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTIN 122 (129)
Q Consensus 86 y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~ 122 (129)
|+.-.++ +.+ ..++++.+.++|+|.++-+-.
T Consensus 69 ~~w~~~~----~~s--~v~~~l~~~~~ggT~ltl~~~ 99 (136)
T cd08901 69 IEWGDPG----EPT--TVEWTFEELDDGRTFVTITES 99 (136)
T ss_pred EEecCCC----CCE--EEEEEEEECCCCcEEEEEEEC
Confidence 7753221 222 367888887656788776644
No 40
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.39 E-value=0.0046 Score=42.90 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=56.9
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceEE
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCK 85 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~~ 85 (129)
++.+..|+||+++||+|+. |...+ .+|+.. ..+.+...| |. +.+.+|. +.= ++.++++. +.+.
T Consensus 2 i~~~r~i~ap~e~Vw~A~T-~~e~l-~~W~~~-~~~~d~~~G----G~---~~~~~g~----~~g--~~~~i~p~-~~l~ 64 (126)
T cd08892 2 ISLTETFQVPAEELYEALT-DEERV-QAFTRS-PAKVDAKVG----GK---FSLFGGN----ITG--EFVELVPG-KKIV 64 (126)
T ss_pred eEEEEEECCCHHHHHHHHC-CHHHH-HhhcCC-CceecCCCC----CE---EEEeCCc----eEE--EEEEEcCC-CEEE
Confidence 6788999999999999998 87765 788854 344544333 23 3333432 222 45556643 3344
Q ss_pred EEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEE
Q 037096 86 YAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYH 124 (129)
Q Consensus 86 y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~ 124 (129)
|+---.+ .+.. ..-..++.+.+. +++|.++.+-...
T Consensus 65 ~~w~~~~-~~~~-~~s~v~~~l~~~-~~gT~ltl~~~g~ 100 (126)
T cd08892 65 QKWRFKS-WPEG-HYSTVTLTFTEK-DDETELKLTQTGV 100 (126)
T ss_pred EEEEcCC-CCCC-CcEEEEEEEEEC-CCCEEEEEEEECC
Confidence 4432111 1111 123467888886 4568777665443
No 41
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.31 E-value=0.011 Score=39.78 Aligned_cols=95 Identities=16% Similarity=0.128 Sum_probs=52.8
Q ss_pred cCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceEEEEEEecC
Q 037096 13 AIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCKYAMIEGD 92 (129)
Q Consensus 13 ~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~~y~iieg~ 92 (129)
+||+++||+++. |...+ .+|.+......+. .+|..-.+. .+++......= ++.++++.++ +.|+.--++
T Consensus 1 ~ap~e~Vw~a~t-~~~~~-~~W~~~~~~~~~~-----~~Gg~~~~~-~~~g~~~~~~~--~v~~~~p~~~-i~~~~~~~~ 69 (124)
T PF08327_consen 1 DAPPERVWEALT-DPEGL-AQWFTTSEAEMDF-----RPGGSFRFM-DPDGGEFGFDG--TVLEVEPPER-IVFTWRMPD 69 (124)
T ss_dssp SSSHHHHHHHHH-SHHHH-HHHSEEEEEEEEC-----STTEEEEEE-ETTSEEEEEEE--EEEEEETTTE-EEEEEEEET
T ss_pred CcCHHHHHHHHC-CHhHH-hhccCCCcceeee-----ecCCEEEEE-ecCCCCceeeE--EEEEEeCCEE-EEEEEEccC
Confidence 689999999998 88865 6883222233332 334433331 23333222222 4666766554 667643233
Q ss_pred CCccCeeEEEEEEEEEEcCCCccEEEEEE
Q 037096 93 ALIDSLSKQLMRSNFEAAGDGGCICKTTI 121 (129)
Q Consensus 93 ~l~~~~~~~~~~~~v~p~~~g~s~v~W~~ 121 (129)
.. .-..-..++.|.+ .+++|.++-+.
T Consensus 70 ~~--~~~~~~v~~~~~~-~~~~T~l~~~~ 95 (124)
T PF08327_consen 70 DP--DGPESRVTFEFEE-EGGGTRLTLTH 95 (124)
T ss_dssp SS--SCEEEEEEEEEEE-ETTEEEEEEEE
T ss_pred CC--CCCceEEEEEEEE-cCCcEEEEEEE
Confidence 21 1234567888888 55667776554
No 42
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.052 Score=38.99 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=27.7
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhccccccccccc
Q 037096 3 VSSSAQELKSAIAPLRMFKALILDANNILPNLLP 36 (129)
Q Consensus 3 ~~~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P 36 (129)
..++..+..|++|+++||+++. |... +++|+.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~T-dpe~-l~~W~~ 38 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALT-DPEL-LARWFM 38 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhc-CHHH-HHhhcC
Confidence 3578899999999999999998 8875 589987
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=96.29 E-value=0.067 Score=37.56 Aligned_cols=91 Identities=20% Similarity=0.319 Sum_probs=49.6
Q ss_pred ecCCHHHHHHHhhhccccccccc-cccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEeccc-ceEEEEEE
Q 037096 12 SAIAPLRMFKALILDANNILPNL-LPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKN-LMCKYAMI 89 (129)
Q Consensus 12 i~a~a~~vw~~~~~d~~~l~p~~-~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~-~~~~y~ii 89 (129)
++|||++||+|+- |...+ .+| .+. ...++.. +|.. +.+..+. +.= ++.++|+.+ ..++|+.-
T Consensus 1 f~ap~e~Vw~A~T-dp~~l-~~w~~~~-~~~~d~~-----~GG~--f~~~~~~----~~G--~~~ev~pp~rlv~tw~~~ 64 (132)
T PTZ00220 1 FYVPPEVLYNAFL-DAYTL-TRLSLGS-PAEMDAK-----VGGK--FSLFNGS----VEG--EFTELEKPKKIVQKWRFR 64 (132)
T ss_pred CCCCHHHHHHHHc-CHHHH-HHHhcCC-CccccCC-----cCCE--EEEecCc----eEE--EEEEEcCCCEEEEEEecC
Confidence 4799999999998 87754 677 432 2233332 2322 2233332 122 344455544 34445542
Q ss_pred ecCCCccCeeEEEEEEEEEEcCCCccEEEEEEE
Q 037096 90 EGDALIDSLSKQLMRSNFEAAGDGGCICKTTIN 122 (129)
Q Consensus 90 eg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~ 122 (129)
+.+. ...+ ..++.++|.++|+|.++-+..
T Consensus 65 ~~~~--~~~s--~vt~~~~~~~~g~T~lt~~~~ 93 (132)
T PTZ00220 65 DWEE--DVYS--KVTIEFRAVEEDHTELKLTQT 93 (132)
T ss_pred CCCC--CCce--EEEEEEEeCCCCcEEEEEEEe
Confidence 2111 1122 478888987666788877655
No 44
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=95.76 E-value=0.71 Score=36.09 Aligned_cols=116 Identities=11% Similarity=0.053 Sum_probs=71.3
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCC-CCCeEEEEEEcC---CCceeEEEEeeeEeE--E
Q 037096 4 SSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAG-GAGSVEQINFAE---GSEYKYAKHKHQIDE--V 77 (129)
Q Consensus 4 ~~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg-~~Gsvr~~~~~~---g~~~~~~kE~~rl~~--i 77 (129)
..+..+..+++|++++|+++. |... .++|.+. ..++++++--+ ..+ +-.+.++. -.+...+-. +-.. .
T Consensus 77 l~fk~e~~vd~s~~~v~dlL~-D~~~-R~~WD~~-~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~--~s~~~~~ 150 (235)
T cd08873 77 LSFCVELKVQTCASDAFDLLS-DPFK-RPEWDPH-GRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLL--VSRRKPA 150 (235)
T ss_pred eEEEEEEEecCCHHHHHHHHh-Ccch-hhhhhhc-ccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEE--EEEEecc
Confidence 357788889999999999998 9886 5999985 78999887422 233 33333332 222223333 2221 2
Q ss_pred eccc-ceEEEEEEecCCCc-----cCeeEEEEEEEEEEcCCCccEEEEEEEEEe
Q 037096 78 DEKN-LMCKYAMIEGDALI-----DSLSKQLMRSNFEAAGDGGCICKTTINYHT 125 (129)
Q Consensus 78 D~~~-~~~~y~iieg~~l~-----~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~ 125 (129)
+..+ ..+..+-+.=+.+| -....+.+-+.+.|.++++|.++.....+|
T Consensus 151 ~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dP 204 (235)
T cd08873 151 TDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNP 204 (235)
T ss_pred CCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCC
Confidence 3322 33344334412111 135677888999998888898887776554
No 45
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=95.57 E-value=0.75 Score=35.06 Aligned_cols=116 Identities=7% Similarity=-0.124 Sum_probs=72.4
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEc-C--C--CceeEEEEeeeEeEEecc
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFA-E--G--SEYKYAKHKHQIDEVDEK 80 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~-~--g--~~~~~~kE~~rl~~iD~~ 80 (129)
+-.+.++++|++++|+++. |..+ .++|.+ .++++++++--+.--.+-.+.+. + . .+..++-- +....++.
T Consensus 47 ~~ge~~v~as~~~v~~ll~-D~~~-r~~Wd~-~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l--~~~~~~~~ 121 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVK-DPRT-RFLYDT-MIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCL--QVEAKEGE 121 (205)
T ss_pred EEEEEEEcCCHHHHHHHHh-Ccch-hhhhHH-hhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEE--EEEEECCC
Confidence 4467789999999999998 9987 599998 58999998763321233333332 1 2 22234444 32223344
Q ss_pred cceEEEEEEecCCCc------cCeeEEEEEEEEEEc---CCCccEEEEEEEEEec
Q 037096 81 NLMCKYAMIEGDALI------DSLSKQLMRSNFEAA---GDGGCICKTTINYHTY 126 (129)
Q Consensus 81 ~~~~~y~iieg~~l~------~~~~~~~~~~~v~p~---~~g~s~v~W~~~y~~~ 126 (129)
...+.-+-++-+.+| -....+.+-..+.|. ++|.|.++....-++.
T Consensus 122 ~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPg 176 (205)
T cd08874 122 LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALC 176 (205)
T ss_pred cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCC
Confidence 434433333332221 124566777888897 6678999999888887
No 46
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=95.24 E-value=0.72 Score=33.40 Aligned_cols=74 Identities=9% Similarity=0.178 Sum_probs=49.6
Q ss_pred EEEEEEecCC-------HHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEe
Q 037096 6 SAQELKSAIA-------PLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVD 78 (129)
Q Consensus 6 ~~~ei~i~a~-------a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD 78 (129)
++..+.||-| .+++|+-+.....+ .....| .+.+|++++.++. --.|.++|+.+ .++| ++..
T Consensus 2 ~~~tvpIN~p~~~p~LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~~~-~l~Rel~f~~~----~v~e--~vt~-- 70 (141)
T cd08863 2 FEHTVPINDPGNIPTLTRAQLWRGLVLRARE-PQLFVP-GLDRCEVLSESGT-VLERELTFGPA----KIRE--TVTL-- 70 (141)
T ss_pred ccEEEecCCCCCCCccCHHHHHhHHHhhhCC-chhccc-ccceEEEEecCCC-EEEEEEEECCc----eEEE--EEEe--
Confidence 3455666643 56999998855553 123455 5899999988642 45599999885 4899 8764
Q ss_pred cccceEEEEEEe
Q 037096 79 EKNLMCKYAMIE 90 (129)
Q Consensus 79 ~~~~~~~y~iie 90 (129)
....++.|.+-.
T Consensus 71 ~~~~~v~f~~~~ 82 (141)
T cd08863 71 EPPSRVHFLQAD 82 (141)
T ss_pred cCCcEEEEEecC
Confidence 344556777654
No 47
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=95.13 E-value=0.79 Score=32.74 Aligned_cols=120 Identities=8% Similarity=0.006 Sum_probs=70.1
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCce---eEEEEeeeEeEEec-
Q 037096 4 SSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEY---KYAKHKHQIDEVDE- 79 (129)
Q Consensus 4 ~~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~---~~~kE~~rl~~iD~- 79 (129)
..+-.+.++++|++++|+++. |... .++|-|. +.++++++-....-.+....+..-.+. .++-- +-...++
T Consensus 39 ~~~k~~~~i~~~~~~v~~~l~-d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~--~~~~~~~~ 113 (193)
T cd00177 39 KLLKAEGVIPASPEQVFELLM-DIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYL--RRRRKLDD 113 (193)
T ss_pred eeEEEEEEECCCHHHHHHHHh-CCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEE--EEEEEcCC
Confidence 345678889999999999998 8665 5899985 788888876432234444555433321 12111 1112233
Q ss_pred ccceEEEEEEecCCCc---cCe--eEEEEEEEEEEcCCCccEEEEEEEEEecCC
Q 037096 80 KNLMCKYAMIEGDALI---DSL--SKQLMRSNFEAAGDGGCICKTTINYHTYRQ 128 (129)
Q Consensus 80 ~~~~~~y~iieg~~l~---~~~--~~~~~~~~v~p~~~g~s~v~W~~~y~~~~~ 128 (129)
....+...-++.+..+ ..+ ..+..-+.+.|.++++|.+++....++.|.
T Consensus 114 ~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 114 GTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGS 167 (193)
T ss_pred CeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCC
Confidence 2222222223332111 112 222345667888778899999999888764
No 48
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=94.79 E-value=0.89 Score=32.90 Aligned_cols=109 Identities=11% Similarity=0.064 Sum_probs=59.9
Q ss_pred EEEEEEecCCHHHHHHHhhhccccc---ccccccc---ceeeEEEEcCCCCCCeEEEE-EEcC-CCc---------eeEE
Q 037096 6 SAQELKSAIAPLRMFKALILDANNI---LPNLLPQ---FIKSLDRVLDAGGAGSVEQI-NFAE-GSE---------YKYA 68 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l---~p~~~P~---~v~s~e~~eGdg~~Gsvr~~-~~~~-g~~---------~~~~ 68 (129)
++.++++++|++++|++|. |..=+ + .-+.. .+.+++ ..|+| -+++.- .... ..| .-.+
T Consensus 1 f~~~~~~~~~~~~v~~~~~-d~~y~~~r~-~~~g~~~~~~~~~~-~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v 75 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFT-DEDYWEARC-AALGADNAEVESFE-VDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRV 75 (159)
T ss_pred CeEEEEcCCCHHHHHHHHc-CHHHHHHHH-HHcCCCCceEEEEE-EcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEE
Confidence 4678999999999999998 54311 1 11111 234444 33443 111111 1222 111 0122
Q ss_pred EEeeeEeEEecccceEEEEEEe-cCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEe
Q 037096 69 KHKHQIDEVDEKNLMCKYAMIE-GDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHT 125 (129)
Q Consensus 69 kE~~rl~~iD~~~~~~~y~iie-g~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~ 125 (129)
++..+-...++..++..|++-- |.+ -+.+.++.+.|. +++|...++.+...
T Consensus 76 ~~~e~w~~~~~g~~~g~~~~~~~G~P-----~~~~G~~~L~~~-~~gt~~~~~g~v~v 127 (159)
T PF10698_consen 76 TRTETWTPLDDGRRTGTFTVSIPGAP-----VSISGTMRLRPD-GGGTRLTVEGEVKV 127 (159)
T ss_pred EEEEEEecCCCCeEEEEEEEEecCce-----EEEEEEEEEecC-CCCEEEEEEEEEEE
Confidence 2200222336777777777632 333 378899999995 45688888888764
No 49
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=94.37 E-value=1.6 Score=32.96 Aligned_cols=119 Identities=5% Similarity=-0.018 Sum_probs=68.2
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCC-CCCeEEEEEEcC-CC---ceeEEEEeeeEeEEecc
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAG-GAGSVEQINFAE-GS---EYKYAKHKHQIDEVDEK 80 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg-~~Gsvr~~~~~~-g~---~~~~~kE~~rl~~iD~~ 80 (129)
+..+.++++|++++++++..|..+ .++|.+. +.++++++--+ ..=-++.++.+. ++ +..++-- +...-++.
T Consensus 51 ~k~e~~i~~~~~~l~~~l~~d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~--~~~~~~~~ 126 (209)
T cd08905 51 FRLEVVVDQPLDNLYSELVDRMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSV--RCAKRRGS 126 (209)
T ss_pred EEEEEEecCCHHHHHHHHHhchhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEE--EEEEEcCC
Confidence 557888999999999555547676 5999986 78877766532 111123322221 11 1123333 32333344
Q ss_pred cceEEEEEEecCCCcc-----CeeEEEEEEEEEEcCC--CccEEEEEEEEEecCC
Q 037096 81 NLMCKYAMIEGDALID-----SLSKQLMRSNFEAAGD--GGCICKTTINYHTYRQ 128 (129)
Q Consensus 81 ~~~~~y~iieg~~l~~-----~~~~~~~~~~v~p~~~--g~s~v~W~~~y~~~~~ 128 (129)
+..+.....+-+.++. ....+..-+.+.|.++ +.|.++|.+..++.|.
T Consensus 127 ~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~ 181 (209)
T cd08905 127 TCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW 181 (209)
T ss_pred cEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC
Confidence 4332222233333220 2344556677888765 7899999999998875
No 50
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=93.65 E-value=0.79 Score=33.36 Aligned_cols=70 Identities=11% Similarity=0.191 Sum_probs=40.1
Q ss_pred EEEEEEecCCH--------HHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEE
Q 037096 6 SAQELKSAIAP--------LRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEV 77 (129)
Q Consensus 6 ~~~ei~i~a~a--------~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~i 77 (129)
+++.+.||-|. +++|+-+.....+ ....+| .+.+|++++-. ...-.|.++|+.. .++| ++...
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~-~~~~~R~v~fg~~----~v~E--~v~~~ 72 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARN-PQLFVP-GIDSCEVLSES-DTVLTREVTFGGA----TVRE--RVTLY 72 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH--GGGT-T-T--EEEEEEE--SSEEEEEEEETTE----EEEE--EEEEE
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhC-hhhCcc-ccCeEEEEecC-CCeEEEEEEECCc----EEEE--EEEEe
Confidence 56666666655 4799998844443 235566 58999998775 4566799999333 6899 87643
Q ss_pred ecccceEEE
Q 037096 78 DEKNLMCKY 86 (129)
Q Consensus 78 D~~~~~~~y 86 (129)
...++.|
T Consensus 73 --~~~~V~f 79 (149)
T PF08982_consen 73 --PPERVDF 79 (149)
T ss_dssp --TTTEEEE
T ss_pred --CCcEEEE
Confidence 3335556
No 51
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=91.99 E-value=4.9 Score=31.46 Aligned_cols=118 Identities=9% Similarity=-0.021 Sum_probs=67.9
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCC-CCCeEEEEEEcC---CCceeEEEEeeeEeEEec
Q 037096 4 SSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAG-GAGSVEQINFAE---GSEYKYAKHKHQIDEVDE 79 (129)
Q Consensus 4 ~~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg-~~Gsvr~~~~~~---g~~~~~~kE~~rl~~iD~ 79 (129)
..+..+.++++|++++++++. |... .|+|.+. ..++++++--+ .-- |..+.-.+ -.+...+-...+...-++
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~-D~~~-r~~Wd~~-~~e~~vI~qld~~~~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~d 153 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLS-DFTK-RPLWDPH-FLSCEVIDWVSEDDQ-IYHITCPIVNNDKPKDLVVLVSRRKPLKD 153 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHh-Chhh-hchhHHh-hceEEEEEEeCCCcC-EEEEecCCCCCCCCceEEEEEEEEecCCC
Confidence 357778899999999999998 9997 5999986 78888876633 222 66655222 111223332001112212
Q ss_pred cc-ceEEEEEEecCCCc---c--CeeEEEEEEEEEEcCCCccEEEEEEEEEe
Q 037096 80 KN-LMCKYAMIEGDALI---D--SLSKQLMRSNFEAAGDGGCICKTTINYHT 125 (129)
Q Consensus 80 ~~-~~~~y~iieg~~l~---~--~~~~~~~~~~v~p~~~g~s~v~W~~~y~~ 125 (129)
.+ ..+.-.-+.-+.+| + ...++..=..+.|.++++|.++....-+|
T Consensus 154 g~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 154 GNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred CCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcCC
Confidence 22 33333323221121 0 23442222378898888898888777665
No 52
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=91.75 E-value=4.6 Score=30.61 Aligned_cols=117 Identities=7% Similarity=-0.013 Sum_probs=64.6
Q ss_pred EEEEEEEecCCHHHHHH-HhhhccccccccccccceeeEEEEcCCCCCCeE-EEEEEcC-CCc---eeEEEEeeeEeEEe
Q 037096 5 SSAQELKSAIAPLRMFK-ALILDANNILPNLLPQFIKSLDRVLDAGGAGSV-EQINFAE-GSE---YKYAKHKHQIDEVD 78 (129)
Q Consensus 5 ~~~~ei~i~a~a~~vw~-~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsv-r~~~~~~-g~~---~~~~kE~~rl~~iD 78 (129)
.+..+.++++|++++|. ++. |..+ .++|.|. +.++++++--+.-=.| +.++... +++ ..++-- |--.-+
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll~-D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~--r~~~~~ 124 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVIL-QPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNV--RRIERR 124 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHHh-Chhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEE--EEEEec
Confidence 45678889999999985 666 9887 4999986 7888877653211111 2233221 122 233333 333333
Q ss_pred cccce-EEEEEEecCCCccCeeEE------EEEEEEEE--cCCCccEEEEEEEEEecCC
Q 037096 79 EKNLM-CKYAMIEGDALIDSLSKQ------LMRSNFEA--AGDGGCICKTTINYHTYRQ 128 (129)
Q Consensus 79 ~~~~~-~~y~iieg~~l~~~~~~~------~~~~~v~p--~~~g~s~v~W~~~y~~~~~ 128 (129)
++... +..++ .-+.+| +.+.| ..-.-+.| .+++.|.++|.+.-++.|.
T Consensus 125 ~~~~i~~~~sv-~~~~~P-~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~ 181 (209)
T cd08906 125 RDRYVSAGIST-THSHKP-PLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR 181 (209)
T ss_pred CCcEEEEEEEE-ecCCCC-CCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC
Confidence 33322 23233 333332 11222 22233444 3456899999999998875
No 53
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=90.91 E-value=5.3 Score=29.81 Aligned_cols=116 Identities=9% Similarity=-0.006 Sum_probs=68.0
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcC---CCceeEEEEeeeEeEEeccc-
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAE---GSEYKYAKHKHQIDEVDEKN- 81 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~---g~~~~~~kE~~rl~~iD~~~- 81 (129)
+..+.+++++++++++.+. |. .++|-+. +.++++++--+.-=.|-...++. -.+..++-- |.-..|.++
T Consensus 46 ~K~~~~v~a~~~~v~~~l~-d~---r~~Wd~~-~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~--r~~~~~~~~g 118 (197)
T cd08869 46 WRASTEVEAPPEEVLQRIL-RE---RHLWDDD-LLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVL--RTWRTDLPKG 118 (197)
T ss_pred EEEEEEeCCCHHHHHHHHH-HH---Hhccchh-hheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEE--EEEEecCCCC
Confidence 5778899999999999876 53 3799986 67777766522111122222221 112234444 433333333
Q ss_pred -ceEEEEEEec-CCCc-cC--eeEEEEEEEEEEcCCCccEEEEEEEEEecCC
Q 037096 82 -LMCKYAMIEG-DALI-DS--LSKQLMRSNFEAAGDGGCICKTTINYHTYRQ 128 (129)
Q Consensus 82 -~~~~y~iieg-~~l~-~~--~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~~ 128 (129)
..+..+-++- +..+ .. ...+.+-+-++|.++++|.+++.+..++.|.
T Consensus 119 ~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~ 170 (197)
T cd08869 119 ACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGR 170 (197)
T ss_pred cEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCC
Confidence 3333333432 1111 11 3455677788998878899999999998875
No 54
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=89.84 E-value=8.1 Score=30.20 Aligned_cols=113 Identities=9% Similarity=-0.055 Sum_probs=66.1
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCC-CCCeEEEEEEcCC-Cc---eeEEEEeeeEeEEec
Q 037096 5 SSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAG-GAGSVEQINFAEG-SE---YKYAKHKHQIDEVDE 79 (129)
Q Consensus 5 ~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg-~~Gsvr~~~~~~g-~~---~~~~kE~~rl~~iD~ 79 (129)
.+..+..+++|++++++++. |... .++|.+. +.++++++--+ .- .+..++-.+- ++ ..++-. +-...+.
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~-D~~~-r~~Wd~~-~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~--~s~~~~~ 155 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLS-DLRR-RPEWDKH-YRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVIL--ASRRKPC 155 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHh-Chhh-hhhhHhh-ccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEE--EEEEecc
Confidence 45667889999999999997 9997 5999986 78888876632 22 2555443321 22 223332 2111222
Q ss_pred ccc---eEEEEEEecCCCc---c--CeeEEEEEEEEEEcCCCccEEEEEEEE
Q 037096 80 KNL---MCKYAMIEGDALI---D--SLSKQLMRSNFEAAGDGGCICKTTINY 123 (129)
Q Consensus 80 ~~~---~~~y~iieg~~l~---~--~~~~~~~~~~v~p~~~g~s~v~W~~~y 123 (129)
++. .+..+.+.-+-+| + ...++.+-+.+.|.+++.|.+++...-
T Consensus 156 ~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~ 207 (240)
T cd08913 156 DNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQA 207 (240)
T ss_pred CCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEe
Confidence 222 2333333222121 1 245566778888988788888775543
No 55
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=89.55 E-value=7.1 Score=29.14 Aligned_cols=119 Identities=10% Similarity=0.034 Sum_probs=66.1
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCeEEEEEEcCC-Cc---eeEEEEeeeEeEEecc
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLD-AGGAGSVEQINFAEG-SE---YKYAKHKHQIDEVDEK 80 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eG-dg~~Gsvr~~~~~~g-~~---~~~~kE~~rl~~iD~~ 80 (129)
+..+..+++||++++..+..|.+. .++|-+. +..+++++. |+..--+...+.... .+ ..++-- |--..++.
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~--r~~~~~~~ 125 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSL--RHWGIREN 125 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEE--EEEEecCC
Confidence 556788999999999765547775 5999986 677776665 322111222222221 22 122222 22223333
Q ss_pred cceEEEEEEecCCCc---c--CeeEEEEEEEEEEcCC--CccEEEEEEEEEecCC
Q 037096 81 NLMCKYAMIEGDALI---D--SLSKQLMRSNFEAAGD--GGCICKTTINYHTYRQ 128 (129)
Q Consensus 81 ~~~~~y~iieg~~l~---~--~~~~~~~~~~v~p~~~--g~s~v~W~~~y~~~~~ 128 (129)
...+...-++-+..+ . ....+.+.+.+.|-++ ++|.++|.+..++.|.
T Consensus 126 ~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~ 180 (208)
T cd08868 126 CYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW 180 (208)
T ss_pred eEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC
Confidence 333333334422221 0 1334456677788654 5799999999888774
No 56
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=89.25 E-value=7.8 Score=29.20 Aligned_cols=119 Identities=6% Similarity=-0.075 Sum_probs=65.0
Q ss_pred EEEEEEecCCHHHHHHHhhhcccc-ccccccccceeeEEEEcC-CCCCCeEEEEEEcC--C---CceeEEEEeeeEeEEe
Q 037096 6 SAQELKSAIAPLRMFKALILDANN-ILPNLLPQFIKSLDRVLD-AGGAGSVEQINFAE--G---SEYKYAKHKHQIDEVD 78 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~-l~p~~~P~~v~s~e~~eG-dg~~Gsvr~~~~~~--g---~~~~~~kE~~rl~~iD 78 (129)
+..+..++++++++++.+. |..+ .-++|-+. +.++++++- |....-++. ..+. + .+...+--. .....+
T Consensus 48 ~k~e~~i~~s~~~~~~~l~-d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~-~~~~~~ 123 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLK-PAAGGLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVV-LVKRYE 123 (208)
T ss_pred EEEEEEecCCHHHHHHHHH-hccchhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEE-EEEecC
Confidence 5678889999999999987 6643 33799986 788888776 322221222 2221 1 111222220 112233
Q ss_pred cccceEEEEEEecCCCc---cCee--E--EEEEEEEEEcCCCccEEEEEEEEEecCC
Q 037096 79 EKNLMCKYAMIEGDALI---DSLS--K--QLMRSNFEAAGDGGCICKTTINYHTYRQ 128 (129)
Q Consensus 79 ~~~~~~~y~iieg~~l~---~~~~--~--~~~~~~v~p~~~g~s~v~W~~~y~~~~~ 128 (129)
+....+.+..++-+.+| ..+. . ....++..|.++++|.++|.+..++.|.
T Consensus 124 d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~ 180 (208)
T cd08903 124 DGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGY 180 (208)
T ss_pred CceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCC
Confidence 43344444444443222 1111 1 2233444444556899999999998875
No 57
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=87.82 E-value=8.6 Score=27.97 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=68.0
Q ss_pred EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCC-CCCeEEEEEE-cCCCc--eeEEEEeeeEeE--Ee
Q 037096 5 SSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAG-GAGSVEQINF-AEGSE--YKYAKHKHQIDE--VD 78 (129)
Q Consensus 5 ~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg-~~Gsvr~~~~-~~g~~--~~~~kE~~rl~~--iD 78 (129)
++.....|+||.+.||+-.. ..++| ..+-|.++ +-.-+|+- +.|+--...+ .-|.+ .++ +- |+++ .|
T Consensus 3 tF~~~~~i~aP~E~VWafhs-rpd~l-q~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW-~A--rhte~~~d 75 (153)
T COG4276 3 TFVYRTTITAPHEMVWAFHS-RPDAL-QRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTW-VA--RHTESGFD 75 (153)
T ss_pred ceEEeeEecCCHHHHhhhhc-CccHH-HhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceE-EE--EeeecccC
Confidence 67788999999999999977 77775 68888765 43344532 4444333221 12222 122 22 4454 54
Q ss_pred cccceEEEEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEecC
Q 037096 79 EKNLMCKYAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTYR 127 (129)
Q Consensus 79 ~~~~~~~y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~ 127 (129)
+- .+++=..+.|+.- .-+..-+-+|.+.+ |+++..=.+.|+...
T Consensus 76 ~~-~~FtDv~i~gPfp---~~~WrHtH~F~~eg-g~TvliD~Vsye~p~ 119 (153)
T COG4276 76 NG-SRFTDVCITGPFP---ALNWRHTHNFVDEG-GGTVLIDSVSYELPA 119 (153)
T ss_pred Cc-ceeeeeeecCCcc---ceeeEEEeeeecCC-CcEEEEeeEEeeccC
Confidence 43 3345556666642 22577788888865 568888899998653
No 58
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=84.32 E-value=15 Score=27.58 Aligned_cols=118 Identities=5% Similarity=-0.050 Sum_probs=63.7
Q ss_pred EEEEEEe-cCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCC---ceeEEEEeeeEeEEeccc
Q 037096 6 SAQELKS-AIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGS---EYKYAKHKHQIDEVDEKN 81 (129)
Q Consensus 6 ~~~ei~i-~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~---~~~~~kE~~rl~~iD~~~ 81 (129)
+..+.++ ++|++.+++.+. |... .++|-|. +..+++++--+.--.|....+..-- +..++-- |...-++..
T Consensus 49 ~k~~~~~~~~s~e~~~~~l~-D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~--r~~~~~~~~ 123 (222)
T cd08871 49 IKVSAIFPDVPAETLYDVLH-DPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNL--RSWLEFGGE 123 (222)
T ss_pred EEEEEEeCCCCHHHHHHHHH-Chhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEE--EEEEeCCCE
Confidence 4455665 699999999987 8764 6899987 5566665542211233333332111 1123333 322223322
Q ss_pred ceEEEEEEecCCCc--c---CeeEEEEEEEEEEcCCCccEEEEEEEEEecCC
Q 037096 82 LMCKYAMIEGDALI--D---SLSKQLMRSNFEAAGDGGCICKTTINYHTYRQ 128 (129)
Q Consensus 82 ~~~~y~iieg~~l~--~---~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~~ 128 (129)
..+..+-++-+..+ . ....+.+-+.+.|.++++|.++|...-++.|.
T Consensus 124 ~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~ 175 (222)
T cd08871 124 YIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS 175 (222)
T ss_pred EEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC
Confidence 22222222222111 1 12244566678888777899999988877764
No 59
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=83.91 E-value=16 Score=27.38 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=67.2
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCce-----eEEEEeeeEeEEe
Q 037096 4 SSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEY-----KYAKHKHQIDEVD 78 (129)
Q Consensus 4 ~~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~-----~~~kE~~rl~~iD 78 (129)
..+-.+-++++|++++.+++. |.. +.|+|.|.. ...+.++..+..-.+-.+.+ ..|. ..+-..-.++.++
T Consensus 46 ~~~k~e~~i~~~~~~~~~vl~-d~~-~~~~W~p~~-~~~~~l~~~~~~~~v~y~~~--~~PwPv~~RD~v~~~~~~~~~~ 120 (215)
T cd08877 46 LSLRMEGEIDGPLFNLLALLN-EVE-LYKTWVPFC-IRSKKVKQLGRADKVCYLRV--DLPWPLSNREAVFRGFGVDRLE 120 (215)
T ss_pred EEEEEEEEecCChhHeEEEEe-hhh-hHhhhcccc-eeeEEEeecCCceEEEEEEE--eCceEecceEEEEEEEEEeeec
Confidence 456778889999999999987 886 579999975 44444544322112222222 2221 1111100223333
Q ss_pred cccceEEE--EEEecCC---------Ccc------CeeEEEEEEEEEEcCCCccEEEEEEEEEecCC
Q 037096 79 EKNLMCKY--AMIEGDA---------LID------SLSKQLMRSNFEAAGDGGCICKTTINYHTYRQ 128 (129)
Q Consensus 79 ~~~~~~~y--~iieg~~---------l~~------~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~~ 128 (129)
+ +..+.- +-+..+. +|. ....+..-+.++|-+++.|.++..+..++.++
T Consensus 121 ~-~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~ 186 (215)
T cd08877 121 E-NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMS 186 (215)
T ss_pred c-CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcc
Confidence 3 333222 2222110 121 13566677888998888899999998888765
No 60
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=80.99 E-value=21 Score=26.78 Aligned_cols=118 Identities=9% Similarity=-0.035 Sum_probs=68.2
Q ss_pred EEEEEEEe-cCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCe-EEEEEEcCC---CceeEEEEeeeEeEEec
Q 037096 5 SSAQELKS-AIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGS-VEQINFAEG---SEYKYAKHKHQIDEVDE 79 (129)
Q Consensus 5 ~~~~ei~i-~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gs-vr~~~~~~g---~~~~~~kE~~rl~~iD~ 79 (129)
.+..+.++ ++|++.+.+++. |... .++|.+. +.+.++++-+...++ +-.+.+..= .+..++-. |-...|+
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~-D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~--r~~~~~~ 120 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQL-DLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYV--RRYIIDE 120 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHh-CHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEE--EEEEEcC
Confidence 45565656 999999999998 8875 6999986 677788776433232 122222111 11235555 5555666
Q ss_pred ccceE--EEEEEecCCCc-----cCeeEEEEEEEEEEcC---CCccEEEEEEEEEecC
Q 037096 80 KNLMC--KYAMIEGDALI-----DSLSKQLMRSNFEAAG---DGGCICKTTINYHTYR 127 (129)
Q Consensus 80 ~~~~~--~y~iieg~~l~-----~~~~~~~~~~~v~p~~---~g~s~v~W~~~y~~~~ 127 (129)
++..+ ...-++-+..+ -.+.+|.+.+.+.|.+ +++|.+.++.--++.|
T Consensus 121 ~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG 178 (207)
T cd08911 121 ENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGV 178 (207)
T ss_pred CCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCC
Confidence 65432 22223321111 1467788888998873 4577777655444444
No 61
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=80.62 E-value=21 Score=26.65 Aligned_cols=120 Identities=8% Similarity=-0.007 Sum_probs=69.5
Q ss_pred EEEEEEEEe-cCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCe-EEEEEE--c-CCCceeEEEEeeeEeEEe
Q 037096 4 SSSAQELKS-AIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGS-VEQINF--A-EGSEYKYAKHKHQIDEVD 78 (129)
Q Consensus 4 ~~~~~ei~i-~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gs-vr~~~~--~-~g~~~~~~kE~~rl~~iD 78 (129)
..+..+.++ ++||+.+++++. |... .++|.+. +...++++-++..|+ |-.+.+ + +=.+..++-. |-...|
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l~-D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~--r~~~~~ 124 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFYW-DDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIA--RRLWES 124 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHHc-Chhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEE--EEEEEc
Confidence 345667777 679999999998 8774 6999986 566666655432122 122221 1 1122234444 433344
Q ss_pred -cccceEEEEEEecCCCcc----CeeEEEEEEEEEEc--CCCccEEEEEEEEEecCC
Q 037096 79 -EKNLMCKYAMIEGDALID----SLSKQLMRSNFEAA--GDGGCICKTTINYHTYRQ 128 (129)
Q Consensus 79 -~~~~~~~y~iieg~~l~~----~~~~~~~~~~v~p~--~~g~s~v~W~~~y~~~~~ 128 (129)
+....+....+.-+..+. .+..|.+.+.+.|. ++++|.+..+.--++.|.
T Consensus 125 ~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~ 181 (209)
T cd08870 125 DDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG 181 (209)
T ss_pred CCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC
Confidence 333333333333222221 47788888999997 566787877776666553
No 62
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=77.32 E-value=25 Score=25.60 Aligned_cols=122 Identities=7% Similarity=-0.069 Sum_probs=69.0
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCC-Cce---eEEEEeeeEeEEec
Q 037096 4 SSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEG-SEY---KYAKHKHQIDEVDE 79 (129)
Q Consensus 4 ~~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g-~~~---~~~kE~~rl~~iD~ 79 (129)
..+..+..+.++++++...+..|... .++|-|. +..+++++--..-..|..+.+..- ++. .++--. +.....+
T Consensus 45 ~~~k~~~~v~~~~~~~~~~~~~d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r-~~~~~~~ 121 (206)
T smart00234 45 EASRAVGVVPMVCADLVEELMDDLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVR-YWRELVD 121 (206)
T ss_pred EEEEEEEEEecChHHHHHHHHhcccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEE-EEEEcCC
Confidence 35667788899999866544448775 5899986 677777665221134544443321 121 222220 1122223
Q ss_pred ccceEEEEEEecCCCc---c--CeeEEEEEEEEEEcCCCccEEEEEEEEEecCC
Q 037096 80 KNLMCKYAMIEGDALI---D--SLSKQLMRSNFEAAGDGGCICKTTINYHTYRQ 128 (129)
Q Consensus 80 ~~~~~~y~iieg~~l~---~--~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~~ 128 (129)
....+..+-++.+-.+ . ....+.+-+.+.|.+++.|.++|...-++.|.
T Consensus 122 ~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~ 175 (206)
T smart00234 122 GSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGW 175 (206)
T ss_pred CcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCC
Confidence 3334444333333211 1 13456677888898877899999998887764
No 63
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=70.85 E-value=4.7 Score=29.09 Aligned_cols=99 Identities=20% Similarity=0.321 Sum_probs=52.7
Q ss_pred EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceEE
Q 037096 6 SAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCK 85 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~~ 85 (129)
++.++..+-+.+.+-..+. |..-++|+++|. ++.++ .+++-=-+-.+ |. + +.+.-+ .+ .-+...+-+|.
T Consensus 3 ~~~~i~t~H~~e~v~~ILS-DP~F~lp~l~p~-ik~v~-~~~~sF~~~g~---~~-~--~~~~~~-G~-vy~s~~~ItYv 71 (136)
T PF11485_consen 3 IEIEIKTSHDIEVVLTILS-DPEFVLPRLFPP-IKSVK-VEENSFRAEGK---FG-G--FPFEMK-GN-VYVSSNEITYV 71 (136)
T ss_dssp EEEEEE-SS-HHHHHHHHT--HHHHHHHHSTT-EEEEE--STTEEEEEEE---ET-T--EEEEEE-EE-EEEETTEEEEE
T ss_pred EEEEeccCCChHheEEEec-CCccEecccCCc-eEEEE-ecCCEEEEEEE---Ee-e--EEEEEE-EE-EEEccceEEEE
Confidence 6778888899999999998 999889999995 88998 45541001111 21 1 111111 02 23444566666
Q ss_pred EEEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEE
Q 037096 86 YAMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYH 124 (129)
Q Consensus 86 y~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~ 124 (129)
+.+..|... .+=+.+++..+ | .++-..+|+
T Consensus 72 f~~~~g~~~----g~GkL~i~~~~---~--~i~l~~eye 101 (136)
T PF11485_consen 72 FNLAGGGPN----GNGKLTIQLEN---G--KIKLIFEYE 101 (136)
T ss_dssp EE----ETT----EEEEEEEEEET---T--EEEEEEEES
T ss_pred EEeeccCCC----CcEEEEEEecC---C--EEEEEEEcc
Confidence 677776543 23334444422 2 567777775
No 64
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=65.28 E-value=51 Score=25.68 Aligned_cols=104 Identities=12% Similarity=0.224 Sum_probs=60.9
Q ss_pred EEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEE--EEEcCCCceeEEEEeeeEeEEecccceEEEE
Q 037096 10 LKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQ--INFAEGSEYKYAKHKHQIDEVDEKNLMCKYA 87 (129)
Q Consensus 10 i~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~--~~~~~g~~~~~~kE~~rl~~iD~~~~~~~y~ 87 (129)
-.+..+++.+|+++. |-.+. .+..| +-++.++.+-+-+-+.+-. +-|++=.+ .|.- ++. .++-.++. -.
T Consensus 74 rligysp~~my~vVS-~V~~Y-~~FVP-wC~kS~V~~~~P~~~~kA~LeVGFk~l~E-~y~S---~Vt-~~~p~l~k-t~ 144 (227)
T KOG3177|consen 74 RLIGYSPSEMYSVVS-NVSEY-HEFVP-WCKKSDVTSRRPSGPLKADLEVGFKPLDE-RYTS---NVT-CVKPHLTK-TV 144 (227)
T ss_pred hhhCCCHHHHHHHHH-hHHHh-hcccc-ceeccceeecCCCCCceeeEEecCcccch-hhee---eeE-EecccceE-Ee
Confidence 347889999999988 66654 46666 5666666554412233333 33432211 1222 222 33333332 22
Q ss_pred EEecCCCccCeeEEEEEEEEEEcC--CCccEEEEEEEEEec
Q 037096 88 MIEGDALIDSLSKQLMRSNFEAAG--DGGCICKTTINYHTY 126 (129)
Q Consensus 88 iieg~~l~~~~~~~~~~~~v~p~~--~g~s~v~W~~~y~~~ 126 (129)
.-+|.+ +......+++.|+. .+.|.+...+.|+-.
T Consensus 145 ~~d~rL----F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~ 181 (227)
T KOG3177|consen 145 CADGRL----FNHLITIWSFKPGPNIPRTCTLDFSVSFEFK 181 (227)
T ss_pred eccccH----HHhhhheeeeccCCCCCCeEEEEEEEEEEeh
Confidence 334543 55666789999988 478999999998853
No 65
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=63.10 E-value=65 Score=24.50 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=67.7
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCeEEEEEEc-----CCCceeEEEEeeeEeEE
Q 037096 4 SSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLD-AGGAGSVEQINFA-----EGSEYKYAKHKHQIDEV 77 (129)
Q Consensus 4 ~~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eG-dg~~Gsvr~~~~~-----~g~~~~~~kE~~rl~~i 77 (129)
..+..+++++++++++.+.+. |- .++|.+. +...++++- +... ....+. +-.+..++-. |.-..
T Consensus 52 ~~~r~~~~i~a~~~~vl~~ll-d~---~~~Wd~~-~~e~~vIe~ld~~~---~I~Yy~~~~PwP~~~RD~V~~--Rs~~~ 121 (204)
T cd08908 52 RLWRTTIEVPAAPEEILKRLL-KE---QHLWDVD-LLDSKVIEILDSQT---EIYQYVQNSMAPHPARDYVVL--RTWRT 121 (204)
T ss_pred EEEEEEEEeCCCHHHHHHHHH-hh---HHHHHHH-hhheEeeEecCCCc---eEEEEEccCCCCCCCcEEEEE--EEEEE
Confidence 346789999999999999987 54 4789987 455555554 3211 222222 1111234444 44333
Q ss_pred ecccceEEEEE--EecCCCcc---CeeEEEEEEEEEEcCCCccEEEEEEEEEecCC
Q 037096 78 DEKNLMCKYAM--IEGDALID---SLSKQLMRSNFEAAGDGGCICKTTINYHTYRQ 128 (129)
Q Consensus 78 D~~~~~~~y~i--ieg~~l~~---~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~~ 128 (129)
|..+..+.-.+ ++-+.++. ....+.....++|.++|+|.++..+..++.|.
T Consensus 122 ~~~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~ 177 (204)
T cd08908 122 NLPKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGH 177 (204)
T ss_pred eCCCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCC
Confidence 34444332222 22222221 23446667788998888999999999888775
No 66
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=56.65 E-value=63 Score=22.25 Aligned_cols=100 Identities=17% Similarity=0.105 Sum_probs=53.8
Q ss_pred EEEEecCCHHHHHHHhhhccc-cccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceEEE
Q 037096 8 QELKSAIAPLRMFKALILDAN-NILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCKY 86 (129)
Q Consensus 8 ~ei~i~a~a~~vw~~~~~d~~-~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~~y 86 (129)
.+.++++||+.+|+.+. +.- .-+.+--...+..-++ +| .--.=+++.+.. ++= +|..+. .++.|.+
T Consensus 3 I~~~l~v~a~~ff~~l~-~s~~~DI~~~tgk~~~~~~L-~G-----~~Y~K~~~~~~~---~~v--~It~~~-~~~~Y~~ 69 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLI-DSLLYDIKQATGKKLPVKQL-KG-----FSYQKKFKNKRE---AKV--KITEYE-PNKRYAA 69 (120)
T ss_pred EEEEecCCHHHHHHHHH-HHHHHHHHHHcCCCCChhhc-CC-----cEEEEEcCCCCE---EEE--EEEEEc-CCCEEEE
Confidence 45679999999999987 211 0011111111111111 22 122222333332 333 455443 4555666
Q ss_pred EEEecCCCccCeeEEEEEEEEEEcCCCccEEEEEEEEEec
Q 037096 87 AMIEGDALIDSLSKQLMRSNFEAAGDGGCICKTTINYHTY 126 (129)
Q Consensus 87 ~iieg~~l~~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~ 126 (129)
+..- ....+..+.++.|-++|.|.++-+=+++..
T Consensus 70 ~~~s------~~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~ 103 (120)
T PF11687_consen 70 TFSS------SRGTFTISYEIEPLDDGSIEVTYEEEYESK 103 (120)
T ss_pred EEEe------cCCCEEEEEEEEECCCCcEEEEEEEEEccC
Confidence 6542 244677888999998888888877776654
No 67
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=55.82 E-value=85 Score=23.53 Aligned_cols=116 Identities=10% Similarity=-0.066 Sum_probs=64.3
Q ss_pred EEEEEEEec-CCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCC---CceeEE--EEeeeEeEEe
Q 037096 5 SSAQELKSA-IAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEG---SEYKYA--KHKHQIDEVD 78 (129)
Q Consensus 5 ~~~~ei~i~-a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g---~~~~~~--kE~~rl~~iD 78 (129)
.+..+.++. ++++.+.+++. |... .++|.+...+ +.-.+.++. -|-.+.+..- .+..++ +. +. ..|
T Consensus 50 ~~k~~~~~~~~s~~~~~~~l~-D~~~-r~~Wd~~~~~-~~~~~~~~~--~i~y~~~k~PwPvs~RD~V~~r~--~~-~~~ 121 (207)
T cd08910 50 EYKVFGVLEDCSPSLLADVYM-DLEY-RKQWDQYVKE-LYEKECDGE--TVIYWEVKYPFPLSNRDYVYIRQ--RR-DLD 121 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHh-CHHH-HHHHHHHHHh-heeecCCCC--EEEEEEEEcCCCCCCceEEEEEE--ec-ccc
Confidence 456677787 79999999998 8775 5899987543 322222221 2223333211 111233 23 32 344
Q ss_pred cccceEEE---EEEecCCCc-----cCeeEEEEEEEEEEcCCCccEEEEEEEEEecCC
Q 037096 79 EKNLMCKY---AMIEGDALI-----DSLSKQLMRSNFEAAGDGGCICKTTINYHTYRQ 128 (129)
Q Consensus 79 ~~~~~~~y---~iieg~~l~-----~~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~~ 128 (129)
.+...+-. ..++-+..+ -....|...+.++|.++++|.++....-++.|.
T Consensus 122 ~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~ 179 (207)
T cd08910 122 VEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGM 179 (207)
T ss_pred CCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCc
Confidence 44432111 222211111 036778888888888777898888877777654
No 68
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.57 E-value=59 Score=26.93 Aligned_cols=17 Identities=35% Similarity=0.761 Sum_probs=12.9
Q ss_pred EEcCCCccEEEEEEEEE
Q 037096 108 EAAGDGGCICKTTINYH 124 (129)
Q Consensus 108 ~p~~~g~s~v~W~~~y~ 124 (129)
...|++||+--|.+.|.
T Consensus 304 sStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKANYN 320 (361)
T ss_pred eecCCCceeeehhhhhh
Confidence 34566789999998875
No 69
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=37.96 E-value=1.5e+02 Score=21.28 Aligned_cols=118 Identities=7% Similarity=-0.036 Sum_probs=71.9
Q ss_pred EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCC--ce---eEEEEeeeEeEE-
Q 037096 4 SSSAQELKSAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGS--EY---KYAKHKHQIDEV- 77 (129)
Q Consensus 4 ~~~~~ei~i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~--~~---~~~kE~~rl~~i- 77 (129)
..+..+..++++++++...+. +-.. .|-+. +.++++++--..-..|..+.+..-. +. .++-- |....
T Consensus 46 ~~~k~~~~v~~~~~~~~~~~~-~~~~---~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~--~~~~~~ 118 (206)
T PF01852_consen 46 KMFKAEGVVPASPEQVVEDLL-DDRE---QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFL--RSWRKD 118 (206)
T ss_dssp EEEEEEEEESSCHHHHHHHHH-CGGG---HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEE--EEEEEC
T ss_pred eEEEEEEEEcCChHHHHHHHH-hhHh---hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEE--EEEEEe
Confidence 456778899999999988887 4332 78875 6788887762122455555544333 32 22222 22222
Q ss_pred ecccceEEEEEEecCCCc----c--CeeEEEEEEEEEEcCCCccEEEEEEEEEecCC
Q 037096 78 DEKNLMCKYAMIEGDALI----D--SLSKQLMRSNFEAAGDGGCICKTTINYHTYRQ 128 (129)
Q Consensus 78 D~~~~~~~y~iieg~~l~----~--~~~~~~~~~~v~p~~~g~s~v~W~~~y~~~~~ 128 (129)
.+....+..+=++.+..+ . ....+.+-+.+.|.+++.|.+++...-++.|.
T Consensus 119 ~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~ 175 (206)
T PF01852_consen 119 EDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGW 175 (206)
T ss_dssp TTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSS
T ss_pred ccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCC
Confidence 344445555444443222 1 23466678888999888899999988877664
No 70
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=35.73 E-value=85 Score=23.65 Aligned_cols=72 Identities=15% Similarity=0.300 Sum_probs=42.8
Q ss_pred ecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCeEEEEEEcCCCceeEEEEeeeEeEEecccceEEEEEEec
Q 037096 12 SAIAPLRMFKALILDANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCKYAMIEG 91 (129)
Q Consensus 12 i~a~a~~vw~~~~~d~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~~y~iieg 91 (129)
++.+..|.|+ |.++- +..-|..| .+++.. +|.. ....+++..+..-++.=+ -|..+|+....+.|++-|-
T Consensus 3 ~~i~v~K~W~----d~~n~-~~~RP~sI-~v~L~~-ng~~-~~~~~~l~~~n~W~~tf~--~Lpkyd~~G~~i~YtV~E~ 72 (187)
T cd00222 3 VNLSGTKIWD----DYDDK-FKKRPAKI-SVQLLA-NGEK-YVKIVTVTKDNNWKYEFK--DLPKYDNEGKKINYTVVEV 72 (187)
T ss_pred EEEEEEEEEC----CCCCC-CCCCCCEE-EEEEEe-CCee-eeeEEEecCCCCeEEEEc--CCCcccCCCCEEEEEEEee
Confidence 3444556665 33332 45566544 466553 4422 345677766654334345 7888888889999999886
Q ss_pred CC
Q 037096 92 DA 93 (129)
Q Consensus 92 ~~ 93 (129)
++
T Consensus 73 ~V 74 (187)
T cd00222 73 QV 74 (187)
T ss_pred cC
Confidence 64
No 71
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=34.80 E-value=83 Score=22.25 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCCceeEEEEeeeEeEEecccceEEEEEEecCC
Q 037096 51 AGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDA 93 (129)
Q Consensus 51 ~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~~y~iieg~~ 93 (129)
-|+++..+|..+ | +++..+-+++.+.|.-++|+.
T Consensus 48 tG~~~e~~f~~~-------~--kve~a~ie~~~~q~lY~dg~~ 81 (131)
T COG0231 48 TGKKVEKTFKAD-------D--KVEVAIVERKTAQYLYIDGDF 81 (131)
T ss_pred CCCEEEEEEcCC-------C--EEEEeEEeeeeEEEEEcCCCe
Confidence 355666666655 4 777777778888888888883
No 72
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=33.55 E-value=2e+02 Score=21.22 Aligned_cols=118 Identities=4% Similarity=-0.103 Sum_probs=63.1
Q ss_pred EEEEEEecCCHHHHHHHhhhc--cccccccccccceeeEEEEcCCCCCCeEEEEEEcC--CC---ceeEEE-EeeeEeEE
Q 037096 6 SAQELKSAIAPLRMFKALILD--ANNILPNLLPQFIKSLDRVLDAGGAGSVEQINFAE--GS---EYKYAK-HKHQIDEV 77 (129)
Q Consensus 6 ~~~ei~i~a~a~~vw~~~~~d--~~~l~p~~~P~~v~s~e~~eGdg~~Gsvr~~~~~~--g~---~~~~~k-E~~rl~~i 77 (129)
+-.+..++++++++.+.+. | ... .++|-+. +..+++++.-+..=.+-...++. .+ +..++- + ....+
T Consensus 48 ~k~~~~i~~~~~~v~~~l~-d~~~~~-r~~Wd~~-~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~--~~~~~ 122 (206)
T cd08867 48 YRAEGIVDALPEKVIDVII-PPCGGL-RLKWDKS-LKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLV--YVKRY 122 (206)
T ss_pred EEEEEEEcCCHHHHHHHHH-hcCccc-ccccccc-ccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEE--EEEEe
Confidence 5678889999999999987 6 443 5899986 78888887732111122222211 11 111211 1 11223
Q ss_pred ecccceEEEEEEecCCCc---cC--eeEEEEEEEEEEcC--CCccEEEEEEEEEecCC
Q 037096 78 DEKNLMCKYAMIEGDALI---DS--LSKQLMRSNFEAAG--DGGCICKTTINYHTYRQ 128 (129)
Q Consensus 78 D~~~~~~~y~iieg~~l~---~~--~~~~~~~~~v~p~~--~g~s~v~W~~~y~~~~~ 128 (129)
++....+...-++-+..+ .. ...+..-+-+.|.+ +++|.++|.+..++.|.
T Consensus 123 ~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~ 180 (206)
T cd08867 123 EDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGM 180 (206)
T ss_pred CCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCC
Confidence 332233333334323221 11 12223334456644 35799999999998875
No 73
>PF08473 VGCC_alpha2: Neuronal voltage-dependent calcium channel alpha 2acd; InterPro: IPR013680 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. This eukaryotic domain has been found in the neuronal voltage-dependent calcium channel (VGCC) alpha 2a, 2c, and 2d subunits. It is also found in other calcium channel alpha-2/delta subunits to the N terminus of a Cache domain (IPR004010 from INTERPRO).
Probab=33.46 E-value=1e+02 Score=20.78 Aligned_cols=29 Identities=28% Similarity=0.333 Sum_probs=21.2
Q ss_pred EEecccceEEEEEEecCC------CccCeeEEEEEE
Q 037096 76 EVDEKNLMCKYAMIEGDA------LIDSLSKQLMRS 105 (129)
Q Consensus 76 ~iD~~~~~~~y~iieg~~------l~~~~~~~~~~~ 105 (129)
-||..+|+|+|+=|+|-. || +|+.|-...
T Consensus 38 YId~~~RtYtw~PI~gT~ySLaLVLP-~Ys~~~i~A 72 (94)
T PF08473_consen 38 YIDEVNRTYTWTPINGTDYSLALVLP-SYSMYYIQA 72 (94)
T ss_pred eeeeeceeEEEeccCCCcceeEEEcC-CCccceeec
Confidence 588999999999999863 55 466554443
No 74
>PF14275 DUF4362: Domain of unknown function (DUF4362)
Probab=32.86 E-value=1.6e+02 Score=19.97 Aligned_cols=16 Identities=19% Similarity=0.569 Sum_probs=12.6
Q ss_pred CCCCeEEEEEEc-CCCc
Q 037096 49 GGAGSVEQINFA-EGSE 64 (129)
Q Consensus 49 g~~Gsvr~~~~~-~g~~ 64 (129)
|.+++||.+.|. +|.|
T Consensus 28 ~k~d~IrIv~yT~EGdP 44 (98)
T PF14275_consen 28 GKPDKIRIVQYTIEGDP 44 (98)
T ss_pred CCCCEEEEEEecCCCCC
Confidence 467899999999 5555
No 75
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=31.71 E-value=1.9e+02 Score=26.42 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=43.3
Q ss_pred cEEEEEEEEecCCHHHHHHHhhh-ccccccccccccceeeEEEEcCCC-----CCCeEEEEEEcCCCceeEEEEeeeEeE
Q 037096 3 VSSSAQELKSAIAPLRMFKALIL-DANNILPNLLPQFIKSLDRVLDAG-----GAGSVEQINFAEGSEYKYAKHKHQIDE 76 (129)
Q Consensus 3 ~~~~~~ei~i~a~a~~vw~~~~~-d~~~l~p~~~P~~v~s~e~~eGdg-----~~Gsvr~~~~~~g~~~~~~kE~~rl~~ 76 (129)
+.++....-+.++|||.=+++.. ..-+.+ +-|-+.|...-++.+.+ .-|.||.|+...+ .+.| -
T Consensus 146 v~~l~e~~~vTgsaDKtIklWk~~~~l~tf-~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge----~l~~-----~ 215 (745)
T KOG0301|consen 146 VASLPENTYVTGSADKTIKLWKGGTLLKTF-SGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE----VLLE-----M 215 (745)
T ss_pred eeecCCCcEEeccCcceeeeccCCchhhhh-ccchhheeeeEEecCCCeEeecCCceEEEEeccCc----eeee-----e
Confidence 34444555677788865444330 111112 22444566666665532 5689999999433 3444 3
Q ss_pred EecccceEEEEEE
Q 037096 77 VDEKNLMCKYAMI 89 (129)
Q Consensus 77 iD~~~~~~~y~ii 89 (129)
.-..|+.|++++.
T Consensus 216 ~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 216 HGHTNFVYSISMA 228 (745)
T ss_pred eccceEEEEEEec
Confidence 5577888888744
No 76
>PF07474 G2F: G2F domain; InterPro: IPR006605 Basement membranes are sheet-like extracellular matrices found at the basal surfaces of epithelia and condensed mesenchyma. By preventing cell mixing and providing a cell-adhesive substrate, they play crucial roles in tissue development and function. Basement menbranes are composed of an evolutionarily ancient set of large glycoproteins, which includes members of the laminin family, collagen IV, perlecan and nidogen/entactin. Nidogen/entactin is an important basement membrane component, which promotes cell attachment, neutrophil chemotaxis, trophoblast outgrowth, and angiogenesis. It consists of three globular regions, G1-G3. G1 and G2 are connected by a thread-like structure, whereas that between G2 and G3 is rod-like [, ]. The nidogen G2 region binds to collagen IV and perlecan. The nidogen G2 structure is composed of two domains, an N-terminal EGF-like domain and a much larger beta-barrel domain of ~230 residues. The nidogen G2 beta-barrel consists of an 11-stranded beta-barrel of complex topology, the interior of which is traversed by the hydrophobic, predominantly alpha helical segment connecting strands C and D. The N-terminal half of the barrel comprises two beta-meanders (strands A-C and D-F) linked by the buried alpha-helical segment. The polypeptide chain then crosses the bottom of the barrel and forms a five-stranded Greek key motif in the C- terminal half of the domain. Helix alpha3 caps the top of the barrel and forms the interface to the EGF-like domain. The nidogen G2 beta-barrel domain has unexpected structural similarity to green fluorescent protein, suggesting that they derive from a common ancestor. A large surface patch on the barrel surface is strikingly conserved in all metazoan nidogens. Site-directed mutagenesis demonstrates that the conserved residues in the conserved patch are involved in the binding of perlecan, and possibly also of collagen IV [].; PDB: 1GL4_A 1H4U_A.
Probab=30.39 E-value=1e+02 Score=23.41 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=26.1
Q ss_pred EEEEcCCCceeEEEEeeeEeEEecccceEEEEEEecCC
Q 037096 56 QINFAEGSEYKYAKHKHQIDEVDEKNLMCKYAMIEGDA 93 (129)
Q Consensus 56 ~~~~~~g~~~~~~kE~~rl~~iD~~~~~~~y~iieg~~ 93 (129)
.++|..| +.-.+++ +..-+|..+...--..|+|.+
T Consensus 93 ~v~F~tG-e~l~itq--~~~GlD~~~~L~~d~~i~G~v 127 (192)
T PF07474_consen 93 EVEFATG-ERLTITQ--TARGLDSDGYLLLDTVISGQV 127 (192)
T ss_dssp EEEESSS---EEEEE--EEEEE-TTS-EEEEEEEEEEE
T ss_pred EEEEeCC-CEEEEEE--EecccCCCCcEEEEEEEeccC
Confidence 4789877 5567888 999999999988888888874
No 77
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=28.64 E-value=43 Score=22.41 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCceeEEEEeeeEeEEecccceEEEEEE
Q 037096 51 AGSVEQINFAEGSEYKYAKHKHQIDEVDEKNLMCKYAMI 89 (129)
Q Consensus 51 ~Gsvr~~~~~~g~~~~~~kE~~rl~~iD~~~~~~~y~ii 89 (129)
.|-.+.+++.+|- |+|.+|.+++.+ |.+-
T Consensus 25 ~g~~kEf~lpsGk---------R~D~id~~~k~I-yELK 53 (89)
T PF15650_consen 25 GGREKEFRLPSGK---------RPDFIDFETKII-YELK 53 (89)
T ss_pred ccceeeeecCCCC---------cCccccCCcceE-EEec
Confidence 4567889998874 999999999765 7664
No 78
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=27.85 E-value=54 Score=18.93 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=9.3
Q ss_pred CeEEEEEEcCC
Q 037096 52 GSVEQINFAEG 62 (129)
Q Consensus 52 Gsvr~~~~~~g 62 (129)
|++|.+.|.++
T Consensus 1 GAvR~~kFsP~ 11 (43)
T PF10313_consen 1 GAVRCCKFSPE 11 (43)
T ss_pred CCeEEEEeCCC
Confidence 78999999954
No 79
>cd00255 nidG2 Nidogen, G2 domain; Nidogen is an important component of the basement membrane, an extracellular sheet-like matrix. Nidogen is a multifunctional protein that interacts with many other basement membrane proteins, like collagen, perlecan, lamin, and has a potential role in the assembly and connection of networks. Nidogen consists of 3 globular domains (G1-G3), G3 is the lamin-binding domain, while G2 binds collagen IV and perlecan. Also found in hemicentin, a protein which functions at various cell-cell and cell-matrix junctions and might assist in refining broad regions of cell contact into oriented, line-shaped junctions. Nidogen G2 consists of an N-terminal EGF-like domain (excluded from this alignment model) and an 11-stranded beta-barrel with a central helix, a topology that exhibits high structural similarity to the green flourescent proteins of Cnidaria.
Probab=24.85 E-value=1.7e+02 Score=22.86 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=47.2
Q ss_pred ecCCHHHHHHHhhh-ccccccccccccceeeEEEEcC--CC---CCCe---EEEEEEcCCCceeEEEEeeeEeEEecccc
Q 037096 12 SAIAPLRMFKALIL-DANNILPNLLPQFIKSLDRVLD--AG---GAGS---VEQINFAEGSEYKYAKHKHQIDEVDEKNL 82 (129)
Q Consensus 12 i~a~a~~vw~~~~~-d~~~l~p~~~P~~v~s~e~~eG--dg---~~Gs---vr~~~~~~g~~~~~~kE~~rl~~iD~~~~ 82 (129)
+++|++--|.+... -..+. .-|+. +.+. .| || +=|. .-.++|..|++.-.+++ .-.-+|..+.
T Consensus 44 s~ip~~~G~~L~~l~~ig~~-igWlF----A~e~-~~~~NGfslTGG~F~~~~~v~F~~~ge~l~I~Q--~~~GlD~~~~ 115 (224)
T cd00255 44 SNIPESLGPSLRPLAPIGGT-IGWLF----ALEQ-GGAKNGFSLTGGEFTRQAEVTFYTGGEKLRITQ--VARGLDSHGH 115 (224)
T ss_pred ecCChHhchhhhhhhhhcCc-eeeEE----Eeec-CCccCcEeccCceEEEEEEEEEcCCCEEEEEEE--EEeccCccCe
Confidence 46777777766431 23333 35664 2331 22 34 1222 23578988787778888 9999999998
Q ss_pred eEEEEEEecCC
Q 037096 83 MCKYAMIEGDA 93 (129)
Q Consensus 83 ~~~y~iieg~~ 93 (129)
..--..|+|.+
T Consensus 116 L~~~~~i~G~v 126 (224)
T cd00255 116 LLLDTVISGRV 126 (224)
T ss_pred EEEEEEEEeec
Confidence 88888888875
No 80
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=21.09 E-value=72 Score=19.95 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=13.4
Q ss_pred EecCCHHHHHHHhhhccc
Q 037096 11 KSAIAPLRMFKALILDAN 28 (129)
Q Consensus 11 ~i~a~a~~vw~~~~~d~~ 28 (129)
+--++|..||.+++-+|+
T Consensus 41 ~~G~dpr~VW~AlC~~~d 58 (63)
T PF11248_consen 41 EAGVDPRDVWRALCDAFD 58 (63)
T ss_pred HcCCCHHHHHHHHHHHcC
Confidence 345789999999994443
No 81
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=20.88 E-value=3.7e+02 Score=20.22 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=19.5
Q ss_pred EEEEeeeEeEEecccceEEEEEEecCC
Q 037096 67 YAKHKHQIDEVDEKNLMCKYAMIEGDA 93 (129)
Q Consensus 67 ~~kE~~rl~~iD~~~~~~~y~iieg~~ 93 (129)
.+|| -+-.+++.+....|.+-++..
T Consensus 49 kvKE--~~~~ynp~~~~~~Y~is~~~l 73 (178)
T PF02087_consen 49 KVKE--ALYHYNPKNKTYFYDISESKL 73 (178)
T ss_dssp EEEE--EEEEEETTTTEEEEEEEEEEE
T ss_pred ceEE--EEEEecCCCceEEEEeeeeec
Confidence 4888 888888888888888877664
No 82
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=20.56 E-value=2.3e+02 Score=17.57 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=8.9
Q ss_pred eEEEEEEEEEEc
Q 037096 99 SKQLMRSNFEAA 110 (129)
Q Consensus 99 ~~~~~~~~v~p~ 110 (129)
..|..++.+...
T Consensus 65 ~~y~l~v~a~D~ 76 (93)
T PF00028_consen 65 SSYQLTVRATDS 76 (93)
T ss_dssp SEEEEEEEEEET
T ss_pred CEEEEEEEEEEC
Confidence 677777777776
Done!