BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037101
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 162/352 (46%), Gaps = 53/352 (15%)
Query: 47 LPPLPLKD-EILQFAEQRLAVVYPIIQEFKSIITSDPLGITKTWVGSDICNYKGFYCESP 105
+PPLPLK + L AE + P +F S G T G D+ FY P
Sbjct: 263 IPPLPLKSLQYLSLAENKFTGEIP---DFLS-------GACDTLTGLDLSGNH-FYGAVP 311
Query: 106 PDNETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTI-SSNIAKLPYLY 164
P F + +SNNF+G + + K+ L
Sbjct: 312 P-------------------------FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346
Query: 165 ELDISNNKFSGPFPAAVLGMN-NLEFLDIRFNYFTGSVPPQIF---TQNLDFLFINNNGF 220
LD+S N+FSG P ++ ++ +L LD+ N F+G + P + L L++ NNGF
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 221 MIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYL 279
K+P + + + ++ L L+ N G +P S+ + S+L ++ L N L G +P E+ Y+
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 280 K--EAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSD 337
K E ++ D N LTG++P L+ + ++ +NN L G +P+ + L NL LS+
Sbjct: 466 KTLETLILDF--NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 338 NYFTHAGPL----CRFLIEKGV-LDVRNNCIPDLPFQRSVAECADFFAHPRF 384
N F+ P CR LI + ++ N IP F++S A+F A R+
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 111/253 (43%), Gaps = 28/253 (11%)
Query: 117 IDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGP 176
+DFN P+ L ++ ++N G I I +L L L +SNN FSG
Sbjct: 473 LDFNDLTGEIPS---GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 177 FPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQN----------LDFLFINNNGFMIKLP- 225
PA + +L +LD+ N F G++P +F Q+ +++I N+G +
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 226 -------DNIGSTHILFLTLAN-----NKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLP 273
I S + L+ N ++ G F + + + N L+G +P
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 274 YEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHF 333
EIG + + ++G N ++G +P + L + L+ ++N L G +P+A+ L L
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 334 SLSDNYFTHAGPL 346
LS+N +GP+
Sbjct: 710 DLSNNNL--SGPI 720
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 92/211 (43%), Gaps = 29/211 (13%)
Query: 138 DIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYF 197
++ +SNNF+ I + L LDIS NK SG F A+ L+ L+I N F
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 198 TGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSE 257
G +PP LP + +L+LA NKF G +P + A
Sbjct: 260 VGPIPP--------------------LP----LKSLQYLSLAENKFTGEIPDFLSGACDT 295
Query: 258 LTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPF-SLACLEKVEQLNFANNLL 316
LT + L N G +P G + N +G+LP +L + ++ L+ + N
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 317 FGMVPEAVCGLP-NLLHFSLSDNYFTHAGPL 346
G +PE++ L +LL LS N F +GP+
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNF--SGPI 384
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 87/217 (40%), Gaps = 65/217 (29%)
Query: 163 LYELDISNNKFSGP------------------------FPAAVLG---MNNLEFLDIRFN 195
L LD+S N SGP FP V G +N+LE LD+ N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 196 YFTGS-VPPQIFTQ-------------------------NLDFLFINNNGFMIKLPDNIG 229
+G+ V + + NL+FL +++N F +P
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGD 221
Query: 230 STHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVN---NQLTGCLPYEIGYLKEAVVFD 286
+ + L ++ NK G R+I S TE+ L+N NQ G +P LK
Sbjct: 222 CSALQHLDISGNKLSGDFSRAI----STCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275
Query: 287 VGDNQLTGQLP--FSLACLEKVEQLNFANNLLFGMVP 321
+ +N+ TG++P S AC + + L+ + N +G VP
Sbjct: 276 LAENKFTGEIPDFLSGAC-DTLTGLDLSGNHFYGAVP 311
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 22/103 (21%)
Query: 147 NNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIF 206
N +G I I +PYL+ L++ +N SG P V + L LD+ N G +P
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP---- 697
Query: 207 TQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPR 249
Q + L T + + L+NN GP+P
Sbjct: 698 -QAMSAL-----------------TMLTEIDLSNNNLSGPIPE 722
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 107 DNETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYEL 166
DN ++ + +N P G +P + + + N+ +G+I + L L L
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIG---SMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685
Query: 167 DISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVP 202
D+S+NK G P A+ + L +D+ N +G +P
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 133/251 (52%), Gaps = 16/251 (6%)
Query: 147 NNFAGTI-SSNIAKLPYLYELDISNNKFSGPFPAAVLGMN-NLEFLDIRFNYFTGSVPPQ 204
NNF+G + + K+ L LD+S N+FSG P ++ ++ +L LD+ N F+G + P
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 205 IF---TQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTE 260
+ L L++ NNGF K+P + + + ++ L L+ N G +P S+ + S+L +
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRD 443
Query: 261 VLLVNNQLTGCLPYEIGYLK--EAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFG 318
+ L N L G +P E+ Y+K E ++ D N LTG++P L+ + ++ +NN L G
Sbjct: 444 LKLWLNMLEGEIPQELMYVKTLETLILDF--NDLTGEIPSGLSNCTNLNWISLSNNRLTG 501
Query: 319 MVPEAVCGLPNLLHFSLSDNYFTHAGPL----CRFLIEKGV-LDVRNNCIPDLPFQRSVA 373
+P+ + L NL LS+N F+ P CR LI + ++ N IP F++S
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 561
Query: 374 ECADFFAHPRF 384
A+F A R+
Sbjct: 562 IAANFIAGKRY 572
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 122/289 (42%), Gaps = 27/289 (9%)
Query: 117 IDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGP 176
+DFN P+ L ++ ++N G I I +L L L +SNN FSG
Sbjct: 470 LDFNDLTGEIPS---GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 177 FPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQN----------LDFLFINNNGFMIKLP- 225
PA + +L +LD+ N F G++P +F Q+ +++I N+G +
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 226 -------DNIGSTHILFLTLAN-----NKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLP 273
I S + L+ N ++ G F + + + N L+G +P
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 274 YEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHF 333
EIG + + ++G N ++G +P + L + L+ ++N L G +P+A+ L L
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 334 SLSDNYFTHAGP-LCRFLIEKGVLDVRNNCIPDLPFQRSVAECADFFAH 381
LS+N + P + +F + N + P R AD +AH
Sbjct: 707 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAH 755
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 92/211 (43%), Gaps = 29/211 (13%)
Query: 138 DIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYF 197
++ +SNNF+ I + L LDIS NK SG F A+ L+ L+I N F
Sbjct: 198 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 198 TGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSE 257
G +PP LP + +L+LA NKF G +P + A
Sbjct: 257 VGPIPP--------------------LP----LKSLQYLSLAENKFTGEIPDFLSGACDT 292
Query: 258 LTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPF-SLACLEKVEQLNFANNLL 316
LT + L N G +P G + N +G+LP +L + ++ L+ + N
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 317 FGMVPEAVCGL-PNLLHFSLSDNYFTHAGPL 346
G +PE++ L +LL LS N F +GP+
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNF--SGPI 381
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 87/217 (40%), Gaps = 65/217 (29%)
Query: 163 LYELDISNNKFSGP------------------------FPAAVLG---MNNLEFLDIRFN 195
L LD+S N SGP FP V G +N+LE LD+ N
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 196 YFTGS-VPPQIFTQ-------------------------NLDFLFINNNGFMIKLPDNIG 229
+G+ V + + NL+FL +++N F +P
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGD 218
Query: 230 STHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVN---NQLTGCLPYEIGYLKEAVVFD 286
+ + L ++ NK G R+I S TE+ L+N NQ G +P LK
Sbjct: 219 CSALQHLDISGNKLSGDFSRAI----STCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 272
Query: 287 VGDNQLTGQLP--FSLACLEKVEQLNFANNLLFGMVP 321
+ +N+ TG++P S AC + + L+ + N +G VP
Sbjct: 273 LAENKFTGEIPDFLSGAC-DTLTGLDLSGNHFYGAVP 308
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 13/132 (9%)
Query: 72 QEFKSIITSDPLGITKTWVGSDICNYKGFYCESPP-DNETAIAVASIDFNGFQLSAPTLD 130
++ + T +P IT G SP DN ++ + +N P
Sbjct: 599 EQLNRLSTRNPCNITSRVYGGHT---------SPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 131 GFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFL 190
G +P + + + N+ +G+I + L L LD+S+NK G P A+ + L +
Sbjct: 650 G---SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 191 DIRFNYFTGSVP 202
D+ N +G +P
Sbjct: 707 DLSNNNLSGPIP 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 129/279 (46%), Gaps = 36/279 (12%)
Query: 87 KTWV-GSDICN--YKGFYCESPPDNETAIAVASIDFNGFQLSAP-TLDGFLDQLPDIA-L 141
+W+ +D CN + G C++ D +T V ++D +G L P + L LP + L
Sbjct: 25 SSWLPTTDCCNRTWLGVLCDT--DTQT-YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81
Query: 142 FHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSV 201
+ NN G I IAKL L+ L I++ SG P + + L LD +N +G++
Sbjct: 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141
Query: 202 PPQIFT-QNLDFLFINNNGFMIKLPDNIGSTHILF--LTLANNKFIGPLPRSIFK---AF 255
PP I + NL + + N +PD+ GS LF +T++ N+ G +P + AF
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201
Query: 256 SELTEVLLVNNQ--LTGCLP--YEIGYLKEAVVFDVG--------------DNQLTGQLP 297
+L+ +L + L G +I K ++ FD+G +N++ G LP
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261
Query: 298 FSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLS 336
L L+ + LN + N L G +P+ NL F +S
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQG----GNLQRFDVS 296
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 266 NQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVC 325
N L G +P I L + + ++G +P L+ ++ + L+F+ N L G +P ++
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 326 GLPNLLHFSLSDNYFTHAGP 345
LPNL+ + N + A P
Sbjct: 147 SLPNLVGITFDGNRISGAIP 166
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 163 LYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMI 222
L LD+ NN+ G P + + L L++ FN G +P Q D NN +
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
Query: 223 KLP 225
P
Sbjct: 306 GSP 308
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 94/217 (43%), Gaps = 39/217 (17%)
Query: 157 IAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFIN 216
+A L L LDIS+NK S + + + NLE L N + P I T NLD L +N
Sbjct: 172 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLN 228
Query: 217 NNGFMIKLPDNIGS----THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCL 272
N +L D IG+ T++ L LANN+ P S ++LTE+ L NQ++
Sbjct: 229 GN----QLKD-IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQISNIS 280
Query: 273 PYEIGYLKEAVVFDVGDNQLTGQLPFS--------------------LACLEKVEQLNFA 312
P + L ++ +NQL P S ++ L K+++L FA
Sbjct: 281 P--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFA 338
Query: 313 NNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRF 349
NN + + ++ L N+ S N + PL
Sbjct: 339 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANL 373
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 82/201 (40%), Gaps = 27/201 (13%)
Query: 184 MNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKF 243
+NNL ++ N T P + T+ +D L NN I N+ T++ LTL NN+
Sbjct: 66 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANL--TNLTGLTLFNNQI 123
Query: 244 --IGPLPR--------------SIFKAFSELTEV--LLVNNQLTGCLPYEIGYLKEAVVF 285
I PL S A S LT + L NQ+T P + L
Sbjct: 124 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERL 181
Query: 286 DVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP 345
D+ N+++ LA L +E L NN + + P + L NL SL+ N G
Sbjct: 182 DISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGT 237
Query: 346 LCRFLIEKGVLDVRNNCIPDL 366
L L LD+ NN I +L
Sbjct: 238 LAS-LTNLTDLDLANNQISNL 257
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 90/225 (40%), Gaps = 17/225 (7%)
Query: 94 ICNYKGFYCESPPDNETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTI 153
+C G C S +N+ ++ +S + P D SN +
Sbjct: 4 LCKKDGGVC-SCNNNKNSVDCSSKKLTAIPSNIPA---------DTKKLDLQSNKLSSLP 53
Query: 154 SSNIAKLPYLYELDISNNKFSGPFPAAVLG-MNNLEFLDIRFNYFTGSVPPQIFTQ--NL 210
S +L L L +++NK PA + + NLE L + N ++P +F Q NL
Sbjct: 54 SKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNL 111
Query: 211 DFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLT 269
L ++ N P S T + +L+L N+ + LP+ +F + L E+ L NNQL
Sbjct: 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK 170
Query: 270 GCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANN 314
L E + +NQL + LEK++ L N
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 39/217 (17%)
Query: 157 IAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFIN 216
+A L L LDIS+NK S + + + NLE L N + P I T NLD L +N
Sbjct: 169 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLN 225
Query: 217 NNGFMIKLPDNIGS----THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCL 272
N +L D IG+ T++ L LANN+ P S ++LTE+ L NQ++
Sbjct: 226 GN----QLKD-IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQISNIS 277
Query: 273 PYEIGYLKEAVVFDVGDNQLTGQLPFS--------------------LACLEKVEQLNFA 312
P + L ++ +NQL P S ++ L K+++L F+
Sbjct: 278 P--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFS 335
Query: 313 NNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRF 349
NN + + ++ L N+ S N + PL
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANL 370
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 81/202 (40%), Gaps = 28/202 (13%)
Query: 184 MNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKF 243
+NNL ++ N T P + T+ +D L NN I N+ T++ LTL NN+
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANL--TNLTGLTLFNNQI 119
Query: 244 --IGPLPR-----------------SIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVV 284
I PL S + L ++ +NQ+T P + L
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLER 177
Query: 285 FDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAG 344
D+ N+++ LA L +E L NN + + P + L NL SL+ N G
Sbjct: 178 LDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIG 233
Query: 345 PLCRFLIEKGVLDVRNNCIPDL 366
L L LD+ NN I +L
Sbjct: 234 TLAS-LTNLTDLDLANNQISNL 254
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 39/217 (17%)
Query: 157 IAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFIN 216
+A L L LDIS+NK S + + + NLE L N + P I T NLD L +N
Sbjct: 168 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLN 224
Query: 217 NNGFMIKLPDNIGS----THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCL 272
N +L D IG+ T++ L LANN+ P S ++LTE+ L NQ++
Sbjct: 225 GN----QLKD-IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQISNIS 276
Query: 273 PYEIGYLKEAVVFDVGDNQLTGQLPFS--------------------LACLEKVEQLNFA 312
P + L ++ +NQL P S ++ L K+++L F+
Sbjct: 277 P--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFS 334
Query: 313 NNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRF 349
NN + + ++ L N+ S N + PL
Sbjct: 335 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANL 369
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 83/201 (41%), Gaps = 27/201 (13%)
Query: 184 MNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKF 243
+NNL ++ N T P + T+ +D L NN I N+ T++ LTL NN+
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANL--TNLTGLTLFNNQI 119
Query: 244 --IGPLPR--------------SIFKAFSELTEVLLVN--NQLTGCLPYEIGYLKEAVVF 285
I PL S A S LT + +N NQ+T P + L
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP--LANLTTLERL 177
Query: 286 DVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP 345
D+ N+++ LA L +E L NN + + P + L NL SL+ N G
Sbjct: 178 DISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGT 233
Query: 346 LCRFLIEKGVLDVRNNCIPDL 366
L L LD+ NN I +L
Sbjct: 234 LAS-LTNLTDLDLANNQISNL 253
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 39/217 (17%)
Query: 157 IAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFIN 216
+A L L LDIS+NK S + + + NLE L N + P I T NLD L +N
Sbjct: 173 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLN 229
Query: 217 NNGFMIKLPDNIGS----THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCL 272
N +L D IG+ T++ L LANN+ P S ++LTE+ L NQ++
Sbjct: 230 GN----QLKD-IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQISNIS 281
Query: 273 PYEIGYLKEAVVFDVGDNQLTGQLPFS--------------------LACLEKVEQLNFA 312
P + L ++ +NQL P S ++ L K+++L F
Sbjct: 282 P--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 339
Query: 313 NNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRF 349
NN + + ++ L N+ S N + PL
Sbjct: 340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANL 374
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 82/201 (40%), Gaps = 27/201 (13%)
Query: 184 MNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKF 243
+NNL ++ N T P + T+ +D L NN I N+ T++ LTL NN+
Sbjct: 67 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANL--TNLTGLTLFNNQI 124
Query: 244 --IGPLPR--------------SIFKAFSELTEV--LLVNNQLTGCLPYEIGYLKEAVVF 285
I PL S A S LT + L NQ+T P + L
Sbjct: 125 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERL 182
Query: 286 DVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP 345
D+ N+++ LA L +E L NN + + P + L NL SL+ N G
Sbjct: 183 DISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGT 238
Query: 346 LCRFLIEKGVLDVRNNCIPDL 366
L L LD+ NN I +L
Sbjct: 239 LAS-LTNLTDLDLANNQISNL 258
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 39/217 (17%)
Query: 157 IAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFIN 216
+A L L LDIS+NK S + + + NLE L N + P I T NLD L +N
Sbjct: 169 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLN 225
Query: 217 NNGFMIKLPDNIGS----THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCL 272
N +L D IG+ T++ L LANN+ P S ++LTE+ L NQ++
Sbjct: 226 GN----QLKD-IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQISNIS 277
Query: 273 PYEIGYLKEAVVFDVGDNQLTGQLPFS--------------------LACLEKVEQLNFA 312
P + L ++ +NQL P S ++ L K+++L F
Sbjct: 278 P--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 335
Query: 313 NNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRF 349
NN + + ++ L N+ S N + PL
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANL 370
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 81/202 (40%), Gaps = 28/202 (13%)
Query: 184 MNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKF 243
+NNL ++ N T P + T+ +D L NN I N+ T++ LTL NN+
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANL--TNLTGLTLFNNQI 119
Query: 244 --IGPLPR-----------------SIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVV 284
I PL S + L ++ +NQ+T P + L
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLER 177
Query: 285 FDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAG 344
D+ N+++ LA L +E L NN + + P + L NL SL+ N G
Sbjct: 178 LDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIG 233
Query: 345 PLCRFLIEKGVLDVRNNCIPDL 366
L L LD+ NN I +L
Sbjct: 234 TLAS-LTNLTDLDLANNQISNL 254
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 39/217 (17%)
Query: 157 IAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFIN 216
+A L L LDIS+NK S + + + NLE L N + P I T NLD L +N
Sbjct: 168 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLN 224
Query: 217 NNGFMIKLPDNIGS----THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCL 272
N +L D IG+ T++ L LANN+ P S ++LTE+ L NQ++
Sbjct: 225 GN----QLKD-IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQISNIS 276
Query: 273 PYEIGYLKEAVVFDVGDNQLTGQLPFS--------------------LACLEKVEQLNFA 312
P + L ++ +NQL P S ++ L K+++L F
Sbjct: 277 P--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 334
Query: 313 NNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRF 349
NN + + ++ L N+ S N + PL
Sbjct: 335 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANL 369
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 83/201 (41%), Gaps = 27/201 (13%)
Query: 184 MNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKF 243
+NNL ++ N T P + T+ +D L NN I N+ T++ LTL NN+
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANL--TNLTGLTLFNNQI 119
Query: 244 --IGPLPR--------------SIFKAFSELTEVLLVN--NQLTGCLPYEIGYLKEAVVF 285
I PL S A S LT + +N NQ+T P + L
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP--LANLTTLERL 177
Query: 286 DVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP 345
D+ N+++ LA L +E L NN + + P + L NL SL+ N G
Sbjct: 178 DISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGT 233
Query: 346 LCRFLIEKGVLDVRNNCIPDL 366
L L LD+ NN I +L
Sbjct: 234 LAS-LTNLTDLDLANNQISNL 253
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 39/217 (17%)
Query: 157 IAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFIN 216
+A L L LDIS+NK S + + + NLE L N + P I T NLD L +N
Sbjct: 169 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLN 225
Query: 217 NNGFMIKLPDNIGS----THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCL 272
N +L D IG+ T++ L LANN+ P S ++LTE+ L NQ++
Sbjct: 226 GN----QLKD-IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQISNIS 277
Query: 273 PYEIGYLKEAVVFDVGDNQLTGQLPFS--------------------LACLEKVEQLNFA 312
P + L ++ +NQL P S ++ L K+++L F
Sbjct: 278 P--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 335
Query: 313 NNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRF 349
NN + + ++ L N+ S N + PL
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANL 370
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 83/202 (41%), Gaps = 28/202 (13%)
Query: 184 MNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKF 243
+NNL ++ N T P + T+ +D L NN I N+ T++ LTL NN+
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANL--TNLTGLTLFNNQI 119
Query: 244 --IGPLPR--------------SIFKAFSELTEVLLVN---NQLTGCLPYEIGYLKEAVV 284
I PL S A S LT + +N NQ+T P + L
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLER 177
Query: 285 FDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAG 344
D+ N+++ LA L +E L NN + + P + L NL SL+ N G
Sbjct: 178 LDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIG 233
Query: 345 PLCRFLIEKGVLDVRNNCIPDL 366
L L LD+ NN I +L
Sbjct: 234 TLAS-LTNLTDLDLANNQISNL 254
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 11/190 (5%)
Query: 96 NYKGFYCESPPD-NETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTIS 154
++KG C S D T++ + FNG + G L+QL + H+N +
Sbjct: 360 SFKG--CCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEF-- 414
Query: 155 SNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQ--NLDF 212
S L L LDIS+ F G+++LE L + N F + P IFT+ NL F
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 213 LFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGC 271
L ++ P S + + L +A+N+ + +P IF + L ++ L N
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCS 533
Query: 272 LPYEIGYLKE 281
P I YL
Sbjct: 534 CP-RIDYLSR 542
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 85 ITKTWVGSDICNYKGFYCESPPD-NETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFH 143
+TK + S+ ++KG C S D T++ + FNG + G L+QL + H
Sbjct: 54 LTKLSLSSNGLSFKG--CCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQH 110
Query: 144 ANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPP 203
+N + S L L LDIS+ F G+++LE L + N F + P
Sbjct: 111 SNLKQMSEF--SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168
Query: 204 QIFTQ--NLDFL 213
IFT+ NL FL
Sbjct: 169 DIFTELRNLTFL 180
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 11/166 (6%)
Query: 184 MNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKF 243
+NNL L+++ N T P + T+ + N + + S L LT
Sbjct: 68 LNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 127
Query: 244 IGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACL 303
+ PL S L + L NQ+T P + L +G+NQ+ P LA L
Sbjct: 128 VTPL-----AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANL 178
Query: 304 EKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRF 349
K+ L +N + + P + LPNL+ L DN + PL
Sbjct: 179 SKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSPLANL 222
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 61 EQRLAVVYPIIQEFKSIITSDPLGITKTWVGSDICNYKGFYCESPPDNETAIAVASIDFN 120
E+ L + P I E +T D +T T SD + F+C + N +A+++A +
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD--DIVKFHCLA---NVSAMSLAGVSIK 298
Query: 121 GFQ--------LSAPTLDGFLDQLPDIALFHANSNNFA---GTISSNIAKLPYLYELDIS 169
+ S + L Q P + L S G+IS LP L LD+S
Sbjct: 299 YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLS 358
Query: 170 NN--KFSGPFPAAVLGMNNLEFLDIRFN 195
N FSG + LG N+L LD+ FN
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFN 386
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 61 EQRLAVVYPIIQEFKSIITSDPLGITKTWVGSDICNYKGFYCESPPDNETAIAVASIDFN 120
E+ L + P I E +T D +T T SD + F+C + N +A+++A +
Sbjct: 239 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD--DIVKFHCLA---NVSAMSLAGVSIK 293
Query: 121 GFQ--------LSAPTLDGFLDQLPDIALFHANSNNFA---GTISSNIAKLPYLYELDIS 169
+ S + L Q P + L S G+IS LP L LD+S
Sbjct: 294 YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLS 353
Query: 170 NN--KFSGPFPAAVLGMNNLEFLDIRFN 195
N FSG + LG N+L LD+ FN
Sbjct: 354 RNALSFSGCCSYSDLGTNSLRHLDLSFN 381
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 15/158 (9%)
Query: 138 DIALFHANSNNFAGTISSNIAKLPYLYELDISNN-KFSGPFPAAVLGMNNLEFLDIRFNY 196
++ + +SN AG ++ L L +LD+S+N + P G+ +L L +
Sbjct: 56 NLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCG 115
Query: 197 FTGSVPPQIFT--QNLDFLFINNNGFMIKLPDN----IGSTHILFLTLANNKFIGPLPRS 250
+ P +F L +L++ +N LPDN +G+ LFL + I +P
Sbjct: 116 LQ-ELGPGLFRGLAALQYLYLQDNNLQ-ALPDNTFRDLGNLTHLFL---HGNRIPSVPEH 170
Query: 251 IFKAFSELTEVLLVNNQLTGCLPY---EIGYLKEAVVF 285
F+ L +LL N + P+ ++G L +F
Sbjct: 171 AFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLF 208
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 9/140 (6%)
Query: 157 IAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQ--NLDFLF 214
I LP + L + NK +A+ + NL +L + N S+P +F + NL L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115
Query: 215 INNNGFMIKLPDNI--GSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCL 272
+ N LPD + T++ +L L +N+ + LP+ +F + LT + L NNQL
Sbjct: 116 LVENQLQ-SLPDGVFDKLTNLTYLYLYHNQ-LQSLPKGVFDKLTNLTRLDLDNNQLQSLP 173
Query: 273 PYEIGYLKEAVVFDVGDNQL 292
L + + DNQL
Sbjct: 174 EGVFDKLTQLKQLSLNDNQL 193
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 96 NYKGFYCESPPD-NETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTIS 154
++KG C S D T++ + FNG + G L+QL + H+N +
Sbjct: 360 SFKG--CCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEF-- 414
Query: 155 SNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQ--NLDF 212
S L L LDIS+ F G+++LE L + N F + P IFT+ NL F
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 213 L 213
L
Sbjct: 475 L 475
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Query: 134 DQLPDIALFHAN--SNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLD 191
D D L+HA SN IS+NI K +L L ++ N + PA + ++NL LD
Sbjct: 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLD 276
Query: 192 IRFNYFTGSVPPQIFT--QNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIG---- 245
+ N T S+P ++ + Q F F +N + LP G+ L N +F+G
Sbjct: 277 LSHNRLT-SLPAELGSCFQLKYFYFFDN--MVTTLPWEFGN-------LCNLQFLGVEGN 326
Query: 246 PLPRSIFKAFSELTEVLLV----NNQLTGCLPYEIGYLK 280
PL + K +E + L+ +N+ LP+E +++
Sbjct: 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIE 365
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 215 INNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPY 274
I+++G +LP H++ L L N+ G P + F+ S + E+ L N++
Sbjct: 44 ISSDGLFGRLP------HLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENKIKEISNK 96
Query: 275 EIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANN 314
L + ++ DNQ++ +P S L + LN A+N
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 65/179 (36%), Gaps = 16/179 (8%)
Query: 95 CNYKGFYCESPPDNETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTIS 154
C +G E P D + + N +L + DG +LP + N G
Sbjct: 15 CTGRGLK-EIPRD--IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71
Query: 155 SNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQN-LDFL 213
+ ++ EL + NK LG++ L+ L++ N + +P N L L
Sbjct: 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131
Query: 214 FINNNGF------------MIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTE 260
+ +N F + K N G+ + + I LP S FK SE +E
Sbjct: 132 NLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSENSE 190
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 23/176 (13%)
Query: 189 FLDIRFNYFTGSVPPQIFT-QNLDFLFINNNG----FMIKL-PDNIGSTHILFLTLANNK 242
FL+ N FT SV T + L L + NG F + L N+ S L ++L N+
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL-NSL 415
Query: 243 FIGPLPRSIFKAFSELTEVL-LVNNQLTG----CLPYEIGYLKEAVVFDVGDNQLTGQLP 297
R+ A++E VL L +N LTG CLP ++ V D+ +N++ +P
Sbjct: 416 NSHAYDRTC--AWAESILVLNLSSNMLTGSVFRCLPPKVK------VLDLHNNRIMS-IP 466
Query: 298 FSLACLEKVEQLNFANNLLFGMVPEAVCG-LPNLLHFSLSDNYFTHAGPLCRFLIE 352
+ L+ +++LN A+N L VP+ V L +L + L DN + P R+L E
Sbjct: 467 KDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSE 521
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%)
Query: 244 IGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACL 303
I L +S+F F++L ++ L N++ L + ++ N L L
Sbjct: 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346
Query: 304 EKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDN 338
+K+E L+ + N + + ++ GLPNL +L N
Sbjct: 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 161 PYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFT----GSVPPQIFTQNLDFLFIN 216
P L EL + NK + A++ G+NNL L + FN + GS+ T +L L +N
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL---ANTPHLRELHLN 248
Query: 217 NNGFMIKLPDNIGS-THILFLTLANN 241
NN ++K+P + +I + L NN
Sbjct: 249 NNK-LVKVPGGLADHKYIQVVYLHNN 273
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 81/207 (39%), Gaps = 9/207 (4%)
Query: 137 PDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNY 196
PD AL +N + L L+ L + NNK S P A + LE L + N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 197 FTGSVPPQIFTQNLDFLFINNNGFMIKLPDNI--GSTHILFLTLANNKFIGP-LPRSIFK 253
P+ + L L ++ N + K+ ++ G ++ + L N + F+
Sbjct: 112 LKEL--PEKMPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 254 AFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFAN 313
+L+ + + + +T +P G + N++T SL L + +L +
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 314 NLLFGMVPEAVCGLPNLLHFSLSDNYF 340
N + + ++ P+L L++N
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 161 PYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFT----GSVPPQIFTQNLDFLFIN 216
P L EL + NK + A++ G+NNL L + FN + GS+ T +L L +N
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL---ANTPHLRELHLN 248
Query: 217 NNGFMIKLPDNIGS-THILFLTLANN 241
NN ++K+P + +I + L NN
Sbjct: 249 NNK-LVKVPGGLADHKYIQVVYLHNN 273
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 9/208 (4%)
Query: 137 PDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNY 196
PD AL +N + L L+ L + NNK S P A + LE L + N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 197 FTGSVPPQIFTQNLDFLFINNNGFMIKLPDNI--GSTHILFLTLANNKFIGP-LPRSIFK 253
P+ + L L ++ N + K+ ++ G ++ + L N + F+
Sbjct: 112 LKEL--PEKMPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 254 AFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFAN 313
+L+ + + + +T +P G + N++T SL L + +L +
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 314 NLLFGMVPEAVCGLPNLLHFSLSDNYFT 341
N + + ++ P+L L++N
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLV 253
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 96 NYKGFYCESPPDNET-AIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTIS 154
++KG C S D T ++ + FNG + G L+QL + H+N +
Sbjct: 384 SFKG--CCSQSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEF-- 438
Query: 155 SNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQ--NLDF 212
S L L LDIS+ F G+++LE L + N F + P IFT+ NL F
Sbjct: 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498
Query: 213 L 213
L
Sbjct: 499 L 499
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 11/165 (6%)
Query: 184 MNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKF 243
+NNL L+++ N T P + T+ + N + + S L LT
Sbjct: 62 LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121
Query: 244 IGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACL 303
+ PL S L + L NQ+T P + L +G+ Q++ P LA L
Sbjct: 122 VTPL-----AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANL 172
Query: 304 EKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCR 348
K+ L +N + + P + LPNL+ L +N + PL
Sbjct: 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLAN 215
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 7/203 (3%)
Query: 138 DIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYF 197
+ L N A P+L EL+++ N S P A + NL L +R N
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 198 TGSVPPQIFT--QNLDFLFINNNGFMIKLPDNIGSTHIL-FLTLANNKFIGPLPRSIFKA 254
+P +FT NL L I+ N +I L + L L + +N + R+ F
Sbjct: 93 K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSG 150
Query: 255 FSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANN 314
+ L ++ L LT + +L +V + + +S L +++ L ++
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 315 -LLFGMVPEAVCGLPNLLHFSLS 336
L M P + GL NL S++
Sbjct: 211 PYLDTMTPNCLYGL-NLTSLSIT 232
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 228 IGSTHILFLTLANNKF--IGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVF 285
+ H+++L N + I + S+ L E+ LV QL PY L V
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301
Query: 286 DVGDNQLT 293
+V NQLT
Sbjct: 302 NVSGNQLT 309
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 229 GSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEI-GYLKEAVVFDV 287
G T + +L L N+ + L +F +EL + L NNQL LP + +L + +
Sbjct: 57 GLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYL 114
Query: 288 GDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYF 340
G NQL L K+++L N L + A L NL SLS N
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 229 GSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEI-GYLKEAVVFDV 287
G T + +L L N+ + L +F +EL + L NNQL LP + +L + +
Sbjct: 57 GLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYL 114
Query: 288 GDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYF 340
G NQL L K+++L N L + A L NL SLS N
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 88/221 (39%), Gaps = 38/221 (17%)
Query: 137 PDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNY 196
PD L +N+ + + L +LY L + NNK S A + L+ L I N+
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 197 FT--------------------GSVPPQIFT--QNLDFLF-----INNNGFMIKLPDNIG 229
VP +F+ +N++ + + N+GF P
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE---PGAFD 170
Query: 230 STHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGD 289
+ +L ++ K G +P+ + + +EL L +N++ ++ + +G
Sbjct: 171 GLKLNYLRISEAKLTG-IPKDLPETLNELH---LDHNKIQAIELEDLLRYSKLYRLGLGH 226
Query: 290 NQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNL 330
NQ+ SL+ L + +L+ NN L VP GLP+L
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKL-SRVP---AGLPDL 263
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 279 LKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDN 338
LK+ V ++ N++ + L+ ++ LN + NLL + GLP + + L N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 339 YFT-HAGPLCRFLIEKGVLDVRNNCIPDLPFQRSV 372
+ +FL + LD+R+N + + F S+
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 231 THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDN 290
T++ +L L N+ + LP +F + L E++LV NQL L ++ N
Sbjct: 85 TNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 291 QLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAV 324
QL L + +L+ + N L + PE V
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGV 176
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 189 FLDIRFNYFTGSVPPQIFTQ--NLDFLFINNNGFMIKLPDNIGS--THILFLTLANNKFI 244
+LD+ N S+P +F + +L L++ N LP+ + + T + +L L+ N+ +
Sbjct: 32 YLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ-L 88
Query: 245 GPLPRSIFKAFSELTEVLLVNNQL 268
LP +F ++L E+ L NQL
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQL 112
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 217 NNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEI 276
+N + K+P++I + L L NN+F IFK +L ++ NN++T E
Sbjct: 19 SNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT---DIEE 74
Query: 277 GYLKEAVVFD---VGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHF 333
G + A + + N+L LE ++ L +N + + ++ GL ++
Sbjct: 75 GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134
Query: 334 SLSDNYFTHAGP 345
SL DN T P
Sbjct: 135 SLYDNQITTVAP 146
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 199 GSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSE 257
SVP I T N L++++N P S ++ L L +N+ +G LP +F + ++
Sbjct: 32 ASVPAGIPT-NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQ 89
Query: 258 LTEVLLVNNQLTGCLPYEI----GYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFAN 313
LT + L NQLT LP + +LKE + N+LT +LP + L + L
Sbjct: 90 LTVLDLGTNQLT-VLPSAVFDRLVHLKELFMC---CNKLT-ELPRGIERLTHLTHLALDQ 144
Query: 314 NLLFGMVPEAVCGLPNLLHFSLSDN 338
N L + A L +L H L N
Sbjct: 145 NQLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|2OPW|A Chain A, Crystal Structure Of Human Phytanoyl-Coa Dioxygenase
Phyhd1 (Apo)
pdb|3OBZ|A Chain A, Crystal Structure Of Human Phytanoyl-Coa Dioxygenase
Phyhd1 2- Oxoglutarate And Iron Complex
Length = 291
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 336 SDNYFTHAGPLCRFLIEKGVLDVRNNCIPDLPFQRSV 372
S +YF +G RF EKGV D + N + +P ++S+
Sbjct: 66 STDYFLSSGDKIRFFFEKGVFDEKGNFL--VPPEKSI 100
>pdb|2XWX|A Chain A, Vibrio Cholerae Colonization Factor Gbpa Crystal Structure
pdb|2XWX|B Chain B, Vibrio Cholerae Colonization Factor Gbpa Crystal Structure
Length = 391
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 13 VIGGKRISLTKGCALKDQNIPITLECPQPKTSISLPPLPLKDEI 56
V G I L +G LK I +E PQP+ S+++ L + EI
Sbjct: 265 VYGTNPIYLKEGSGLKSVEIGYQIEAPQPEYSLTVSGLAKEYEI 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,945,341
Number of Sequences: 62578
Number of extensions: 507058
Number of successful extensions: 1299
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1105
Number of HSP's gapped (non-prelim): 168
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)