Query 037101
Match_columns 395
No_of_seqs 475 out of 3768
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:40:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.9E-36 4.2E-41 325.6 25.9 293 64-365 27-346 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.1E-30 1.3E-34 275.3 19.9 251 112-364 140-393 (968)
3 KOG4194 Membrane glycoprotein 99.9 9.6E-27 2.1E-31 220.5 12.8 254 111-368 77-334 (873)
4 KOG4194 Membrane glycoprotein 99.9 5.6E-28 1.2E-32 228.8 2.5 251 113-366 126-431 (873)
5 KOG0444 Cytoskeletal regulator 99.9 6E-27 1.3E-31 223.4 -1.3 252 111-368 6-285 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 7.8E-27 1.7E-31 222.7 -4.2 248 113-367 79-332 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1.7E-26 3.7E-31 210.2 -8.0 245 113-369 46-293 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 2.7E-26 5.8E-31 209.0 -9.9 249 107-367 63-313 (565)
9 PLN03210 Resistant to P. syrin 99.8 4.8E-20 1E-24 200.1 20.8 253 106-368 605-887 (1153)
10 PRK15370 E3 ubiquitin-protein 99.8 1.2E-20 2.6E-25 193.2 12.8 226 113-365 200-429 (754)
11 KOG0618 Serine/threonine phosp 99.8 3.5E-22 7.6E-27 198.7 -2.4 240 113-362 242-487 (1081)
12 PRK15370 E3 ubiquitin-protein 99.8 4.3E-20 9.3E-25 189.2 11.3 227 113-368 179-405 (754)
13 PRK15387 E3 ubiquitin-protein 99.8 2.7E-19 5.8E-24 182.5 13.2 221 113-366 223-460 (788)
14 PRK15387 E3 ubiquitin-protein 99.8 5E-19 1.1E-23 180.5 14.4 218 113-367 202-438 (788)
15 KOG0618 Serine/threonine phosp 99.8 3.6E-21 7.7E-26 191.6 -3.6 239 138-383 242-488 (1081)
16 PLN03210 Resistant to P. syrin 99.8 7E-18 1.5E-22 183.4 21.6 243 113-368 590-863 (1153)
17 KOG4237 Extracellular matrix p 99.8 4.5E-20 9.9E-25 168.2 2.2 248 113-363 68-358 (498)
18 cd00116 LRR_RI Leucine-rich re 99.8 9.8E-20 2.1E-24 171.7 2.8 250 117-366 3-293 (319)
19 PLN03150 hypothetical protein; 99.8 8.4E-18 1.8E-22 171.3 15.6 168 47-220 350-527 (623)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.1E-19 4.5E-24 169.5 1.6 251 113-363 24-319 (319)
21 KOG4237 Extracellular matrix p 99.7 3.2E-20 6.9E-25 169.2 -5.2 246 138-385 68-360 (498)
22 KOG0617 Ras suppressor protein 99.7 2.3E-19 4.9E-24 146.4 -4.0 154 134-316 30-185 (264)
23 KOG0617 Ras suppressor protein 99.7 2.9E-19 6.2E-24 145.8 -4.2 186 107-322 28-217 (264)
24 KOG0532 Leucine-rich repeat (L 99.5 3.5E-16 7.7E-21 149.0 -2.3 193 136-338 74-270 (722)
25 KOG0532 Leucine-rich repeat (L 99.5 4.8E-16 1E-20 148.1 -2.7 183 160-373 74-256 (722)
26 COG4886 Leucine-rich repeat (L 99.4 3.5E-13 7.7E-18 131.0 7.7 196 116-322 97-295 (394)
27 COG4886 Leucine-rich repeat (L 99.4 4.9E-13 1.1E-17 130.0 7.8 195 141-345 97-294 (394)
28 KOG1259 Nischarin, modulator o 99.3 5.5E-13 1.2E-17 118.4 1.5 206 154-368 207-416 (490)
29 KOG3207 Beta-tubulin folding c 99.3 5.2E-13 1.1E-17 124.0 1.3 207 133-342 117-340 (505)
30 KOG1909 Ran GTPase-activating 99.3 8.9E-13 1.9E-17 119.3 1.7 241 113-364 31-311 (382)
31 KOG3207 Beta-tubulin folding c 99.2 2.4E-12 5.1E-17 119.7 -0.6 207 111-318 120-340 (505)
32 PLN03150 hypothetical protein; 99.2 8.9E-11 1.9E-15 120.0 10.3 105 258-362 420-526 (623)
33 PF14580 LRR_9: Leucine-rich r 99.1 2.7E-11 5.9E-16 102.6 3.7 121 232-357 20-146 (175)
34 PF14580 LRR_9: Leucine-rich r 99.1 7.3E-11 1.6E-15 100.0 4.5 109 255-367 18-129 (175)
35 KOG1259 Nischarin, modulator o 99.1 2.6E-11 5.7E-16 107.8 1.2 185 176-367 205-390 (490)
36 KOG1909 Ran GTPase-activating 99.0 4.9E-11 1.1E-15 108.2 1.3 224 131-365 24-284 (382)
37 KOG0531 Protein phosphatase 1, 99.0 6.2E-11 1.3E-15 115.8 -1.7 239 113-365 73-319 (414)
38 KOG0531 Protein phosphatase 1, 99.0 1.1E-10 2.3E-15 114.1 -0.2 218 112-343 95-320 (414)
39 PF13855 LRR_8: Leucine rich r 98.9 2.2E-09 4.7E-14 74.9 3.6 39 323-361 20-59 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 2.2E-09 4.8E-14 74.9 2.8 61 137-197 1-61 (61)
41 KOG1859 Leucine-rich repeat pr 98.8 7.2E-11 1.6E-15 116.1 -7.3 129 231-367 164-295 (1096)
42 KOG4658 Apoptotic ATPase [Sign 98.8 7.4E-09 1.6E-13 108.7 6.3 250 111-367 522-810 (889)
43 KOG4658 Apoptotic ATPase [Sign 98.7 9E-09 2E-13 108.0 4.5 245 112-360 545-828 (889)
44 COG5238 RNA1 Ran GTPase-activa 98.7 5.4E-09 1.2E-13 92.1 1.4 135 231-366 157-318 (388)
45 KOG1859 Leucine-rich repeat pr 98.5 1.8E-09 4E-14 106.4 -6.3 106 256-367 164-270 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.5 2.3E-09 5.1E-14 95.5 -5.9 223 113-338 160-397 (419)
47 KOG2120 SCF ubiquitin ligase, 98.5 7.6E-09 1.7E-13 92.3 -3.0 221 113-339 137-374 (419)
48 PF08263 LRRNT_2: Leucine rich 98.5 2.1E-07 4.5E-12 59.7 4.1 39 65-103 2-43 (43)
49 KOG4579 Leucine-rich repeat (L 98.4 1.4E-08 3.1E-13 80.5 -2.9 83 231-316 53-135 (177)
50 COG5238 RNA1 Ran GTPase-activa 98.4 7E-08 1.5E-12 85.2 0.8 227 113-343 31-318 (388)
51 KOG2982 Uncharacterized conser 98.4 5.3E-08 1.1E-12 87.0 -0.3 191 113-310 72-285 (418)
52 KOG4579 Leucine-rich repeat (L 98.3 4.9E-08 1.1E-12 77.5 -2.9 111 162-299 28-141 (177)
53 PF12799 LRR_4: Leucine Rich r 98.2 5.9E-07 1.3E-11 57.7 2.1 39 329-367 2-40 (44)
54 PF12799 LRR_4: Leucine Rich r 98.2 2.3E-06 5.1E-11 54.9 3.8 40 161-202 1-40 (44)
55 PRK15386 type III secretion pr 98.1 1.2E-05 2.5E-10 76.8 9.2 74 134-219 49-123 (426)
56 KOG2982 Uncharacterized conser 98.0 9.2E-07 2E-11 79.2 -0.0 228 136-365 44-291 (418)
57 PRK15386 type III secretion pr 98.0 3E-05 6.5E-10 74.1 8.6 137 157-315 48-188 (426)
58 KOG3665 ZYG-1-like serine/thre 98.0 7.4E-06 1.6E-10 84.3 4.6 116 248-365 140-264 (699)
59 KOG1644 U2-associated snRNP A' 97.9 1.7E-05 3.7E-10 67.4 5.3 103 256-360 42-149 (233)
60 KOG3665 ZYG-1-like serine/thre 97.8 1.4E-05 3E-10 82.3 3.6 134 208-343 122-265 (699)
61 KOG1644 U2-associated snRNP A' 97.8 3.4E-05 7.3E-10 65.6 5.2 106 258-367 21-129 (233)
62 KOG2739 Leucine-rich acidic nu 97.5 3.2E-05 6.9E-10 68.4 0.4 100 256-357 43-149 (260)
63 KOG2123 Uncharacterized conser 97.1 3.8E-05 8.3E-10 68.4 -3.3 99 255-357 18-123 (388)
64 KOG2739 Leucine-rich acidic nu 96.9 0.00073 1.6E-08 59.9 2.9 91 274-366 37-131 (260)
65 PF13306 LRR_5: Leucine rich r 96.7 0.0042 9.1E-08 49.8 5.8 112 250-367 6-118 (129)
66 PF13306 LRR_5: Leucine rich r 96.5 0.0074 1.6E-07 48.3 6.1 61 132-194 7-67 (129)
67 KOG2123 Uncharacterized conser 96.3 0.00052 1.1E-08 61.4 -1.9 97 232-334 20-123 (388)
68 KOG4341 F-box protein containi 96.1 0.0002 4.4E-09 67.3 -5.6 251 112-362 138-437 (483)
69 KOG4308 LRR-containing protein 96.0 8E-05 1.7E-09 73.5 -9.5 36 163-198 89-128 (478)
70 KOG1947 Leucine rich repeat pr 95.8 0.0026 5.7E-08 63.2 0.2 110 159-268 186-307 (482)
71 PF13504 LRR_7: Leucine rich r 95.4 0.0081 1.8E-07 29.8 1.1 16 352-367 2-17 (17)
72 PF00560 LRR_1: Leucine Rich R 95.4 0.0052 1.1E-07 32.8 0.4 19 163-182 2-20 (22)
73 PF00560 LRR_1: Leucine Rich R 95.0 0.016 3.4E-07 30.9 1.5 11 331-341 3-13 (22)
74 KOG0473 Leucine-rich repeat pr 94.3 0.0012 2.5E-08 57.7 -6.3 82 279-362 41-122 (326)
75 KOG4308 LRR-containing protein 94.2 0.00033 7.1E-09 69.3 -11.1 180 114-293 89-303 (478)
76 PF13504 LRR_7: Leucine rich r 93.7 0.041 9E-07 27.3 1.3 13 186-198 2-14 (17)
77 KOG4341 F-box protein containi 93.6 0.0036 7.9E-08 59.1 -4.8 244 111-357 163-458 (483)
78 smart00370 LRR Leucine-rich re 93.1 0.078 1.7E-06 29.4 2.0 22 184-206 1-22 (26)
79 smart00369 LRR_TYP Leucine-ric 93.1 0.078 1.7E-06 29.4 2.0 22 184-206 1-22 (26)
80 smart00369 LRR_TYP Leucine-ric 92.5 0.12 2.5E-06 28.7 2.2 19 350-368 1-19 (26)
81 smart00370 LRR Leucine-rich re 92.5 0.12 2.5E-06 28.7 2.2 19 350-368 1-19 (26)
82 KOG0473 Leucine-rich repeat pr 92.1 0.004 8.6E-08 54.5 -6.2 85 255-342 41-125 (326)
83 KOG1947 Leucine rich repeat pr 90.9 0.13 2.7E-06 51.1 1.9 111 231-341 188-308 (482)
84 smart00364 LRR_BAC Leucine-ric 86.3 0.48 1E-05 26.3 1.3 18 351-368 2-19 (26)
85 KOG3864 Uncharacterized conser 85.6 0.11 2.4E-06 44.7 -2.1 33 258-290 103-135 (221)
86 PF13516 LRR_6: Leucine Rich r 85.5 0.12 2.7E-06 28.0 -1.3 14 161-174 2-15 (24)
87 KOG3864 Uncharacterized conser 85.3 0.15 3.3E-06 43.9 -1.4 82 231-313 101-185 (221)
88 smart00365 LRR_SD22 Leucine-ri 83.9 0.84 1.8E-05 25.4 1.6 18 350-367 1-18 (26)
89 smart00368 LRR_RI Leucine rich 72.0 2.8 6.2E-05 23.6 1.5 15 351-365 2-16 (28)
90 KOG3763 mRNA export factor TAP 63.5 5.1 0.00011 39.9 2.3 15 231-245 270-284 (585)
91 KOG3763 mRNA export factor TAP 59.4 5.5 0.00012 39.7 1.7 36 136-171 217-254 (585)
92 PLN00131 hypothetical protein; 40.8 66 0.0014 26.3 4.9 17 12-28 79-95 (218)
93 KOG4242 Predicted myosin-I-bin 40.2 43 0.00093 33.0 4.4 105 137-243 165-280 (553)
94 KOG4242 Predicted myosin-I-bin 34.5 41 0.00089 33.2 3.3 32 328-359 354-388 (553)
95 smart00367 LRR_CC Leucine-rich 33.7 30 0.00064 18.8 1.4 11 161-171 2-12 (26)
96 TIGR00864 PCC polycystin catio 28.7 41 0.0009 40.5 2.6 32 143-174 1-32 (2740)
97 TIGR00864 PCC polycystin catio 25.0 52 0.0011 39.7 2.5 32 286-317 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-36 Score=325.56 Aligned_cols=293 Identities=30% Similarity=0.493 Sum_probs=182.6
Q ss_pred hhhHHHHHHHHHHhccCCCCCCCCCCC-CCCCCCcceeeeCCCCCCCccccEEEEEcCCCCcCCCCcccccCCCCCCcEE
Q 037101 64 LAVVYPIIQEFKSIITSDPLGITKTWV-GSDICNYKGFYCESPPDNETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALF 142 (395)
Q Consensus 64 ~~~~~~~l~~~k~~~~~~~~~~~~~W~-~~~~C~w~gv~c~~~~~~~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L 142 (395)
.+.++.+|++||+.+. +|.+...+|. ..++|.|.||.|+.. .+|+.||++++.+.+. .+..+..+++|+.|
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~~------~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L 98 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNS------SRVVSIDLSGKNISGK-ISSAIFRLPYIQTI 98 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCCC------CcEEEEEecCCCcccc-CChHHhCCCCCCEE
Confidence 4478899999999995 7777788996 468999999999753 2788888888887773 45567777777777
Q ss_pred ECCCCCCCCCCccccC-CCCCCCEEEccCCCCCC----------------------CcchhhcCCCCCcEEEeecCcCCC
Q 037101 143 HANSNNFAGTISSNIA-KLPYLYELDISNNKFSG----------------------PFPAAVLGMNNLEFLDIRFNYFTG 199 (395)
Q Consensus 143 ~l~~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~----------------------~~p~~l~~l~~L~~L~Ls~n~l~~ 199 (395)
++++|.+.+.+|..+. .+++|++|+|++|++++ .+|..++.+++|++|++++|.+.+
T Consensus 99 ~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~ 178 (968)
T PLN00113 99 NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178 (968)
T ss_pred ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc
Confidence 7777777776665543 56666666666665554 444445555555555555555554
Q ss_pred CCCchhcc-CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhc
Q 037101 200 SVPPQIFT-QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIG 277 (395)
Q Consensus 200 ~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 277 (395)
.+|..+.. ++|++|++++|.+.+.+|..++. .+|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..++
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHh
Confidence 55544433 45555555555555555555544 55555555555555555554443 55555555555555555555555
Q ss_pred CCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-CcCCCCCCEE
Q 037101 278 YLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFLIEKGVL 356 (395)
Q Consensus 278 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L 356 (395)
++++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+++..+. +..+++|+.|
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 555555555555555555555555555566666666655555555555556666666666655554432 5555666666
Q ss_pred EccCCCCCC
Q 037101 357 DVRNNCIPD 365 (395)
Q Consensus 357 ~L~~N~i~~ 365 (395)
++++|.+++
T Consensus 338 ~L~~n~l~~ 346 (968)
T PLN00113 338 QLWSNKFSG 346 (968)
T ss_pred ECcCCCCcC
Confidence 666666553
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=6.1e-30 Score=275.30 Aligned_cols=251 Identities=24% Similarity=0.385 Sum_probs=159.2
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLD 191 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 191 (395)
.+++.|++++|.+.+ ..+..++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|+
T Consensus 140 ~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 140 PNLETLDLSNNMLSG-EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCCCEEECcCCcccc-cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 456666666666665 2455566666777777776666666666666666777777777666666666666666777777
Q ss_pred eecCcCCCCCCchhcc-CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCc
Q 037101 192 IRFNYFTGSVPPQIFT-QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLT 269 (395)
Q Consensus 192 Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~ 269 (395)
+++|.+++.+|..+.. ++|++|++++|.+.+.+|..++. ++|++|++++|.+.+.+|..+.. +++|++|++++|.+.
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-ccCcCEEECcCCeec
Confidence 7666666666665544 66666666666666666666655 66666666666666666665554 566666666666666
Q ss_pred ccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-Cc
Q 037101 270 GCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CR 348 (395)
Q Consensus 270 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~ 348 (395)
+.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++..+. +.
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666554332 34
Q ss_pred CCCCCCEEEccCCCCC
Q 037101 349 FLIEKGVLDVRNNCIP 364 (395)
Q Consensus 349 ~l~~L~~L~L~~N~i~ 364 (395)
.+++|+.|++++|.+.
T Consensus 378 ~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 378 SSGNLFKLILFSNSLE 393 (968)
T ss_pred CcCCCCEEECcCCEec
Confidence 4444444444444444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=9.6e-27 Score=220.53 Aligned_cols=254 Identities=22% Similarity=0.242 Sum_probs=209.0
Q ss_pred cccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 037101 111 AIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFL 190 (395)
Q Consensus 111 ~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 190 (395)
....+.||+++|.++. +-...|.++++|+.+++..|.++ .+|.......+|+.|+|.+|.|+..-..++..++.|+.|
T Consensus 77 p~~t~~LdlsnNkl~~-id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSH-IDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred ccceeeeecccccccc-CcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 4567889999999998 45666899999999999999998 778766666779999999999998888899999999999
Q ss_pred EeecCcCCCCCCchhcc--CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCc
Q 037101 191 DIRFNYFTGSVPPQIFT--QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQ 267 (395)
Q Consensus 191 ~Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~ 267 (395)
|||.|.|+ ++|...+. .++++|+|++|+++..-...|.. .+|..|.|++|+++ .+|...|+.+++|+.|+|..|+
T Consensus 155 DLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 155 DLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccc
Confidence 99999999 88887776 68999999999998665556655 78999999999999 8999999889999999999999
Q ss_pred CcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-
Q 037101 268 LTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL- 346 (395)
Q Consensus 268 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~- 346 (395)
|.-.--..|.++++|+.|.|..|+|...-...|..+.++++|+|+.|+++..-..++.++++|+.|+|++|.|..+-+.
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence 8744355677888888888888887766666677777777888887777666666777777777777777777776443
Q ss_pred CcCCCCCCEEEccCCCCCCCCC
Q 037101 347 CRFLIEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 347 ~~~l~~L~~L~L~~N~i~~lp~ 368 (395)
....++|+.|||++|+|+.++.
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred hhhcccceeEeccccccccCCh
Confidence 4455677777777777777764
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=5.6e-28 Score=228.84 Aligned_cols=251 Identities=19% Similarity=0.220 Sum_probs=130.0
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
+++.|+|.+|.|+. +-...+..++.|+.|||+.|.|+..-...|..-.++++|+|++|.|+..--..|..+.+|..|.|
T Consensus 126 hl~~L~L~~N~I~s-v~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 126 HLEKLDLRHNLISS-VTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred ceeEEeeecccccc-ccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 56666666666655 33444555555555555555555333333444455555555555555444445555555555555
Q ss_pred ecCcCCCCCCchhcc--CCCCeeeeccccCc------------------------ccCCccccC-ccccEEEcccCCCCC
Q 037101 193 RFNYFTGSVPPQIFT--QNLDFLFINNNGFM------------------------IKLPDNIGS-THILFLTLANNKFIG 245 (395)
Q Consensus 193 s~n~l~~~~p~~~~~--~~L~~L~L~~n~l~------------------------~~~~~~~~~-~~L~~L~l~~n~l~~ 245 (395)
+.|+++ .+|...|. ++|+.|+|..|++. ..-...|.. .++++|+|+.|++..
T Consensus 205 srNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 205 SRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred ccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 555555 55544443 44444444444432 111111111 455555555555552
Q ss_pred CCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhh--
Q 037101 246 PLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEA-- 323 (395)
Q Consensus 246 ~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-- 323 (395)
.-..+++. +++|+.|++++|.|...-++.|...++|++|+|+.|+|+...+.+|..+..|++|+|++|.+...-...
T Consensus 284 vn~g~lfg-Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 284 VNEGWLFG-LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred hhcccccc-cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 22233333 566666666666666555566666666666666666666544555554545555555554443322223
Q ss_pred -------------------------hcCCCCCcEEEccCCcccccCCC-CcCCCCCCEEEccCCCCCCC
Q 037101 324 -------------------------VCGLPNLLHFSLSDNYFTHAGPL-CRFLIEKGVLDVRNNCIPDL 366 (395)
Q Consensus 324 -------------------------~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~i~~l 366 (395)
|.++++|+.|++.+|++..++.. |..+++|++|||.+|.|..+
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence 44455555555555555554442 55555666666666655554
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=6e-27 Score=223.45 Aligned_cols=252 Identities=24% Similarity=0.368 Sum_probs=138.9
Q ss_pred cccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCC----------------
Q 037101 111 AIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFS---------------- 174 (395)
Q Consensus 111 ~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~---------------- 174 (395)
..-|+.+|+++|.++|...|.....++.++.|.|...++. .+|..++.+.+|++|.+++|++.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 3456666777777766555555555555555555555544 45555555555555555555544
Q ss_pred --------CCcchhhcCCCCCcEEEeecCcCCCCCCchhcc-CCCCeeeeccccCcccCCccccC--ccccEEEcccCCC
Q 037101 175 --------GPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT-QNLDFLFINNNGFMIKLPDNIGS--THILFLTLANNKF 243 (395)
Q Consensus 175 --------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~l~~n~l 243 (395)
.-+|..+-.|..|+.||||+|++. ++|..+-. +++..|+|++|++. .+|..++. +.|-+|||++|++
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence 124444555555555555555555 55544433 45555555555554 34443333 4455555555555
Q ss_pred CCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCccc-ccCchhccCCCCCCeeecccCcCCCCChh
Q 037101 244 IGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLT-GQLPFSLACLEKVEQLNFANNLLFGMVPE 322 (395)
Q Consensus 244 ~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 322 (395)
. .+|+.+.+ +..|++|.|++|.+.-.-...+-.+++|++|.+++.+-+ ..+|.++..+.+|..+|+|.|.+ ..+|+
T Consensus 163 e-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~vPe 239 (1255)
T KOG0444|consen 163 E-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIVPE 239 (1255)
T ss_pred h-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-CcchH
Confidence 5 45555444 455555555555443111111222233333333333211 24666666777777777777776 45677
Q ss_pred hhcCCCCCcEEEccCCcccccCCCCcCCCCCCEEEccCCCCCCCCC
Q 037101 323 AVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 323 ~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~lp~ 368 (395)
.+..+++|+.|+|++|+|+...-......+|+.|+|+.|+++.+|.
T Consensus 240 cly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~ 285 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPD 285 (1255)
T ss_pred HHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchH
Confidence 7777777777777777777665555556667777777777777764
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=7.8e-27 Score=222.70 Aligned_cols=248 Identities=24% Similarity=0.337 Sum_probs=115.8
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEE
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFP-AAVLGMNNLEFLD 191 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~ 191 (395)
+++++++..|++....+|..+-.+..|+.|+|++|++. .+|..+..-+++-.|+||+|+|. .+| .-|-++..|-+||
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhc
Confidence 45555555555544444544555555555555555554 44555555555555555555555 333 2334555555555
Q ss_pred eecCcCCCCCCchhcc-CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCC-CCCchHHHhcCCCCcEEEccCCcC
Q 037101 192 IRFNYFTGSVPPQIFT-QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFI-GPLPRSIFKAFSELTEVLLVNNQL 268 (395)
Q Consensus 192 Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~-~~~p~~~~~~l~~L~~L~l~~n~l 268 (395)
||+|++. .+|+.+.. ..|++|.|++|.+.-.--..+.. ++|+.|.+++.+-+ ..+|.++-. +.+|..+|++.|.+
T Consensus 157 LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~-l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 157 LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD-LHNLRDVDLSENNL 234 (1255)
T ss_pred cccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh-hhhhhhccccccCC
Confidence 5555555 55554433 44555555555432110000111 22222222222211 123333332 44555555555555
Q ss_pred cccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCccc--ccCCC
Q 037101 269 TGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFT--HAGPL 346 (395)
Q Consensus 269 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~~~ 346 (395)
. .+|+.+.++.+|+.|+||+|+|+ .+-.......+|++|++|.|++ ..+|+.++.+++|+.|.+.+|+++ |+|..
T Consensus 235 p-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 235 P-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred C-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 5 45555555555555555555555 2222333334555555555555 334555555555555555555433 33333
Q ss_pred CcCCCCCCEEEccCCCCCCCC
Q 037101 347 CRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 347 ~~~l~~L~~L~L~~N~i~~lp 367 (395)
++.+.+|+.+..++|.+.-+|
T Consensus 312 IGKL~~Levf~aanN~LElVP 332 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLELVP 332 (1255)
T ss_pred hhhhhhhHHHHhhccccccCc
Confidence 444444444444444444433
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=1.7e-26 Score=210.22 Aligned_cols=245 Identities=25% Similarity=0.351 Sum_probs=139.7
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
.+..+++++|.+.. +...+.++..|+.+.+.+|++. ..|++++.+..++.|+.++|++. .+|..++.+.+|+.|+.
T Consensus 46 ~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 45555666666554 2333556666666666666665 45555666666666666666666 55666666666666666
Q ss_pred ecCcCCCCCCchhcc-CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcc
Q 037101 193 RFNYFTGSVPPQIFT-QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTG 270 (395)
Q Consensus 193 s~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~ 270 (395)
++|.+. ++|+.++. ..|+.++..+|+++ ..|..++. .++..+++.+|++. .+|+.... |+.|++||...|.+.
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE- 196 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-
Confidence 666665 55555554 45666666666665 44444444 55666666666655 44444443 556666666555555
Q ss_pred cCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhc-CCCCCcEEEccCCcccccCCCCcC
Q 037101 271 CLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVC-GLPNLLHFSLSDNYFTHAGPLCRF 349 (395)
Q Consensus 271 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~ 349 (395)
.+|+.++.+.+|..|+|..|+|. .+| .|.++..|.+|+++.|++ ..+|.... ++++|.+|||++|+++..|..+..
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl 273 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL 273 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeeccccccccCchHHHH
Confidence 55555666666666666666665 444 455555555555555555 33333333 555555555555555555555555
Q ss_pred CCCCCEEEccCCCCCCCCCC
Q 037101 350 LIEKGVLDVRNNCIPDLPFQ 369 (395)
Q Consensus 350 l~~L~~L~L~~N~i~~lp~~ 369 (395)
+.+|++||+++|.|+++|..
T Consensus 274 LrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 274 LRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred hhhhhhhcccCCccccCCcc
Confidence 55555555555555555543
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=2.7e-26 Score=208.98 Aligned_cols=249 Identities=22% Similarity=0.306 Sum_probs=226.5
Q ss_pred CCCccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCC
Q 037101 107 DNETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNN 186 (395)
Q Consensus 107 ~~~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 186 (395)
+..+...++++++.+|.+.. ++.+++.+..++.++.++|+++ .+|..+..+..|+.|++++|.+. .+|+.++.+-.
T Consensus 63 dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~ 138 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLD 138 (565)
T ss_pred hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhh
Confidence 34456678999999999997 7888999999999999999998 78999999999999999999999 78888999999
Q ss_pred CcEEEeecCcCCCCCCchhcc-CCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccC
Q 037101 187 LEFLDIRFNYFTGSVPPQIFT-QNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVN 265 (395)
Q Consensus 187 L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~ 265 (395)
|+.|+..+|+++ ++|..++. .+|..+++.+|.+....|..+..++|++||...|-+. .+|+.+.. +.+|+-|++..
T Consensus 139 l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~ 215 (565)
T KOG0472|consen 139 LEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRR 215 (565)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhh
Confidence 999999999999 88888776 7899999999999966666666699999999999988 99999887 99999999999
Q ss_pred CcCcccCchhhcCCCCCcEEEccCCcccccCchhcc-CCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccC
Q 037101 266 NQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLA-CLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAG 344 (395)
Q Consensus 266 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 344 (395)
|++. .+| +|.++..|++|.++.|+|+ .+|.... ++.++.+||+.+|++ ..+|+.++.+.+|..||+++|.|++.+
T Consensus 216 Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 216 NKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred cccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCccccCC
Confidence 9999 777 7999999999999999999 7777654 899999999999999 668999999999999999999999999
Q ss_pred CCCcCCCCCCEEEccCCCCCCCC
Q 037101 345 PLCRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 345 ~~~~~l~~L~~L~L~~N~i~~lp 367 (395)
+.++++ .|+.|.+.||.+.++.
T Consensus 292 ~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 292 YSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred cccccc-eeeehhhcCCchHHHH
Confidence 999999 9999999999988753
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=4.8e-20 Score=200.14 Aligned_cols=253 Identities=19% Similarity=0.205 Sum_probs=183.1
Q ss_pred CCCCccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCC
Q 037101 106 PDNETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMN 185 (395)
Q Consensus 106 ~~~~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 185 (395)
|......+++.|++.++.+.. ++..+..+++|+.|+++++.....+|. ++.+++|++|+|++|.....+|..+.+++
T Consensus 605 P~~f~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~ 681 (1153)
T PLN03210 605 PSNFRPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLN 681 (1153)
T ss_pred CCcCCccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccC
Confidence 344445688899999988875 555678899999999998776566764 78889999999999876678899999999
Q ss_pred CCcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHH--------------
Q 037101 186 NLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSI-------------- 251 (395)
Q Consensus 186 ~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~-------------- 251 (395)
+|+.|++++|...+.+|..+..++|+.|++++|.....+|... .+|++|++++|.+. .+|..+
T Consensus 682 ~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~ 758 (1153)
T PLN03210 682 KLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIE-EFPSNLRLENLDELILCEMK 758 (1153)
T ss_pred CCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCccc-cccccccccccccccccccc
Confidence 9999999987655588887766888888888887655555422 46777777777765 454321
Q ss_pred ---------------HhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcC
Q 037101 252 ---------------FKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLL 316 (395)
Q Consensus 252 ---------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 316 (395)
+...++|++|++++|.....+|..++++++|+.|++++|..-+.+|..+ .+++|+.|++++|..
T Consensus 759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR 837 (1153)
T ss_pred hhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc
Confidence 1113467777777777666778888888888888888775444666655 577777777777755
Q ss_pred CCCChhhhcCCCCCcEEEccCCcccccCCCCcCCCCCCEEEccC-CCCCCCCC
Q 037101 317 FGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRN-NCIPDLPF 368 (395)
Q Consensus 317 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~-N~i~~lp~ 368 (395)
...+|.. ..+|+.|+|++|.++.++..+..+++|+.|+|++ |++..+|.
T Consensus 838 L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 838 LRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred ccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 4444432 3567777777777777666677777778887776 55666654
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=1.2e-20 Score=193.20 Aligned_cols=226 Identities=24% Similarity=0.347 Sum_probs=133.2
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
.++.|++++|.+.. ++..+ ..+|+.|++++|.++ .+|..+. .+|+.|+|++|.+. .+|..+. .+|+.|++
T Consensus 200 ~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 200 QITTLILDNNELKS--LPENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred CCcEEEecCCCCCc--CChhh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 56666666666664 23222 246666677666665 3454332 35666777777666 5555443 46667777
Q ss_pred ecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccC
Q 037101 193 RFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCL 272 (395)
Q Consensus 193 s~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~ 272 (395)
++|+++ .+|..+. .+|+.|++++|++. .+|..+. .+|+.|++++|.+. .+|..+ .++|+.|++++|.++ .+
T Consensus 270 s~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt-~LP~~lp-~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt-~L 340 (754)
T PRK15370 270 FHNKIS-CLPENLP-EELRYLSVYDNSIR-TLPAHLP-SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALT-SL 340 (754)
T ss_pred cCCccC-ccccccC-CCCcEEECCCCccc-cCcccch-hhHHHHHhcCCccc-cCCccc---cccceeccccCCccc-cC
Confidence 777666 5665443 46677777777666 3443332 35666677776666 455443 246677777777766 35
Q ss_pred chhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCC----c
Q 037101 273 PYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLC----R 348 (395)
Q Consensus 273 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~----~ 348 (395)
|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|+++. +|..+. ..|+.|++++|+++.++..+ .
T Consensus 341 P~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~ 412 (754)
T PRK15370 341 PASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVRLPESLPHFRG 412 (754)
T ss_pred Chhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcccCchhHHHHhh
Confidence 54442 56777777777766 4555442 467777777777653 444433 35667777777776554332 3
Q ss_pred CCCCCCEEEccCCCCCC
Q 037101 349 FLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 349 ~l~~L~~L~L~~N~i~~ 365 (395)
.++++..|+|.+|.|+.
T Consensus 413 ~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 413 EGPQPTRIIVEYNPFSE 429 (754)
T ss_pred cCCCccEEEeeCCCccH
Confidence 34666677777776653
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=3.5e-22 Score=198.71 Aligned_cols=240 Identities=23% Similarity=0.318 Sum_probs=161.4
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
.++.+|++.|+++. ++..+..+.+|+.+...+|.++ .+|..+....+|+.|+..+|.+. .+|....++++|++|+|
T Consensus 242 nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN--LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cceeeecchhhhhc--chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 55566666666665 4455666666666666666663 45555556666666666666666 55666666777777777
Q ss_pred ecCcCCCCCCchhcc---CCCCeeeeccccCcccCCccccC--ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCc
Q 037101 193 RFNYFTGSVPPQIFT---QNLDFLFINNNGFMIKLPDNIGS--THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQ 267 (395)
Q Consensus 193 s~n~l~~~~p~~~~~---~~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~ 267 (395)
..|++. .+|+.++. .+|+.|+.+.|.+. ..|..-.. ..|+.|++.+|.++...-+.+ .++++|+.|+|++|+
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l-~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVL-VNFKHLKVLHLSYNR 394 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhh-ccccceeeeeecccc
Confidence 777776 66665544 34566666666655 33322111 567888888888876544433 347788888888888
Q ss_pred CcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC-C
Q 037101 268 LTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP-L 346 (395)
Q Consensus 268 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~ 346 (395)
+.......+.++..|+.|+||+|+++ .+|..+..++.|++|...+|++ ...| .+..++.|+.+|++.|+++...- .
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l-~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQL-LSFP-ELAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCce-eech-hhhhcCcceEEecccchhhhhhhhh
Confidence 87444445677888888888888888 7788888888888888888887 4456 67788888888888888876532 2
Q ss_pred CcCCCCCCEEEccCCC
Q 037101 347 CRFLIEKGVLDVRNNC 362 (395)
Q Consensus 347 ~~~l~~L~~L~L~~N~ 362 (395)
...-++|++|||+||.
T Consensus 472 ~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 472 ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hCCCcccceeeccCCc
Confidence 2222788888888886
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=4.3e-20 Score=189.16 Aligned_cols=227 Identities=21% Similarity=0.363 Sum_probs=186.0
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
+.+.|++++++++. +|..+. ++|+.|++++|+++ .+|..+. .+|++|++++|+++ .+|..+. .+|+.|+|
T Consensus 179 ~~~~L~L~~~~Lts--LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLTT--IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcCc--CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 56889999998886 444342 58999999999998 5666554 58999999999999 6776653 58999999
Q ss_pred ecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccC
Q 037101 193 RFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCL 272 (395)
Q Consensus 193 s~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~ 272 (395)
++|.+. .+|..+. .+|+.|++++|++. .+|..+. .+|++|++++|++. .+|..+. .+|++|++++|.++ .+
T Consensus 249 s~N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt-~L 319 (754)
T PRK15370 249 SINRIT-ELPERLP-SALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLT-AL 319 (754)
T ss_pred cCCccC-cCChhHh-CCCCEEECcCCccC-ccccccC-CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCccc-cC
Confidence 999998 8887654 68999999999998 5776654 48999999999998 6776543 47999999999998 45
Q ss_pred chhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcCCCC
Q 037101 273 PYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIE 352 (395)
Q Consensus 273 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 352 (395)
|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|+|++|+++.+++.+. ..
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~s 389 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLP--AA 389 (754)
T ss_pred Cccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHH--HH
Confidence 6544 368999999999999 5776654 79999999999996 4676553 699999999999998876653 36
Q ss_pred CCEEEccCCCCCCCCC
Q 037101 353 KGVLDVRNNCIPDLPF 368 (395)
Q Consensus 353 L~~L~L~~N~i~~lp~ 368 (395)
|+.|++++|+|+.+|.
T Consensus 390 L~~LdLs~N~L~~LP~ 405 (754)
T PRK15370 390 LQIMQASRNNLVRLPE 405 (754)
T ss_pred HHHHhhccCCcccCch
Confidence 8999999999999884
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=2.7e-19 Score=182.48 Aligned_cols=221 Identities=24% Similarity=0.304 Sum_probs=138.8
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhc----------
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVL---------- 182 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~---------- 182 (395)
+++.|++++|+++. ++. .+++|++|++++|+++. +|.. .++|++|++++|.++ .+|..+.
T Consensus 223 ~L~~L~L~~N~Lt~--LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~lp~~L~~L~Ls~N 292 (788)
T PRK15387 223 HITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT-HLPALPSGLCKLWIFGN 292 (788)
T ss_pred CCCEEEccCCcCCC--CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-hhhhchhhcCEEECcCC
Confidence 67778888887776 332 24677888888887773 4432 245555666555555 3332110
Q ss_pred -------CCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcC
Q 037101 183 -------GMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAF 255 (395)
Q Consensus 183 -------~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l 255 (395)
.+++|++|++++|+++ .+|. ...+|+.|++++|.+. .+|.. ..+|++|++++|++. .+|.. .
T Consensus 293 ~Lt~LP~~p~~L~~LdLS~N~L~-~Lp~--lp~~L~~L~Ls~N~L~-~LP~l--p~~Lq~LdLS~N~Ls-~LP~l----p 361 (788)
T PRK15387 293 QLTSLPVLPPGLQELSVSDNQLA-SLPA--LPSELCKLWAYNNQLT-SLPTL--PSGLQELSVSDNQLA-SLPTL----P 361 (788)
T ss_pred ccccccccccccceeECCCCccc-cCCC--CcccccccccccCccc-ccccc--ccccceEecCCCccC-CCCCC----C
Confidence 1244555555555554 3333 1234555555555554 23321 135677777777766 45542 3
Q ss_pred CCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEc
Q 037101 256 SELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSL 335 (395)
Q Consensus 256 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 335 (395)
.+|+.|++++|+++ .+|.. ..+|+.|++++|+|+ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++
T Consensus 362 ~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~L 429 (788)
T PRK15387 362 SELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSV 429 (788)
T ss_pred cccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhh
Confidence 45666777777776 34432 346888888888888 45543 3578888999988854 5643 346788999
Q ss_pred cCCcccccCCCCcCCCCCCEEEccCCCCCCC
Q 037101 336 SDNYFTHAGPLCRFLIEKGVLDVRNNCIPDL 366 (395)
Q Consensus 336 ~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~l 366 (395)
++|+|+.++..+..+++|+.|+|++|+|++.
T Consensus 430 s~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 430 YRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred ccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 9999988777788899999999999999874
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=5e-19 Score=180.50 Aligned_cols=218 Identities=28% Similarity=0.307 Sum_probs=127.8
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
.-..|+++.+.++. +|..+. ++|+.|++.+|+++. +|. .+++|++|++++|+++ .+|.. .++|++|++
T Consensus 202 ~~~~LdLs~~~Lts--LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCCc--CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 34578999999986 555554 489999999999984 564 3588999999999999 55643 467788888
Q ss_pred ecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccC
Q 037101 193 RFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCL 272 (395)
Q Consensus 193 s~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~ 272 (395)
++|.++ .+|.. ..+|+.|++++|++. .+|.. .++|++|++++|++. .+|.. ..+|+.|++++|+++ .+
T Consensus 270 s~N~L~-~Lp~l--p~~L~~L~Ls~N~Lt-~LP~~--p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~-~L 337 (788)
T PRK15387 270 FSNPLT-HLPAL--PSGLCKLWIFGNQLT-SLPVL--PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLT-SL 337 (788)
T ss_pred cCCchh-hhhhc--hhhcCEEECcCCccc-ccccc--ccccceeECCCCccc-cCCCC----cccccccccccCccc-cc
Confidence 888776 55542 245666666666665 34432 145666666666666 34431 123444455555444 23
Q ss_pred chhhcCCCCCcEEEccCCcccc-------------------cCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEE
Q 037101 273 PYEIGYLKEAVVFDVGDNQLTG-------------------QLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHF 333 (395)
Q Consensus 273 ~~~~~~l~~L~~L~Ls~n~l~~-------------------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 333 (395)
|.. ..+|+.|+|++|+|++ .+|.. ..+|+.|++++|++++ +|.. .++|+.|
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~L 407 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKEL 407 (788)
T ss_pred ccc---ccccceEecCCCccCCCCCCCcccceehhhccccccCccc---ccccceEEecCCcccC-CCCc---ccCCCEE
Confidence 321 1244445555554441 23322 1345555555555543 3322 2355566
Q ss_pred EccCCcccccCCCCcCCCCCCEEEccCCCCCCCC
Q 037101 334 SLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 334 ~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~lp 367 (395)
++++|.++.++.. ..+|+.|++++|+|+.+|
T Consensus 408 dLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP 438 (788)
T PRK15387 408 MVSGNRLTSLPML---PSGLLSLSVYRNQLTRLP 438 (788)
T ss_pred EccCCcCCCCCcc---hhhhhhhhhccCcccccC
Confidence 6666665554321 234555666666666665
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=3.6e-21 Score=191.63 Aligned_cols=239 Identities=23% Similarity=0.310 Sum_probs=152.6
Q ss_pred CCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhc-cCCCCeeeec
Q 037101 138 DIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIF-TQNLDFLFIN 216 (395)
Q Consensus 138 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~~~L~~L~L~ 216 (395)
+|+++++++|+++ .+|..++.+.+|+.|+..+|.++ .+|..+..+.+|+.|++.+|.++ .+|+... .++|++|+|.
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 3444444444444 23344444444444444444443 44444444444444444444444 3333333 2444444444
Q ss_pred cccCcccCCccccC---ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCccc
Q 037101 217 NNGFMIKLPDNIGS---THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLT 293 (395)
Q Consensus 217 ~n~l~~~~~~~~~~---~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 293 (395)
.|.+. .+|+.+.. .+++.|..+.|++. ..|..-...++.|+.|++.+|++++..-..+.++++|+.|+|++|++.
T Consensus 319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 44444 23332222 22444444444443 333222223457889999999999887778899999999999999999
Q ss_pred ccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcCCCCCCEEEccCCCCCCCCCCC---
Q 037101 294 GQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPDLPFQR--- 370 (395)
Q Consensus 294 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~lp~~~--- 370 (395)
......+.+++.|++|+||+|++ ..+|+.+..+..|++|...+|.+...| .+..++.|+.+|++.|+++.+-.+.
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 44445578999999999999999 567899999999999999999999877 8999999999999999999843211
Q ss_pred -CchhhhcccCCCC
Q 037101 371 -SVAECADFFAHPR 383 (395)
Q Consensus 371 -~~~~~~~~~~~~~ 383 (395)
......++.+|++
T Consensus 475 ~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTR 488 (1081)
T ss_pred CcccceeeccCCcc
Confidence 2344556666654
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=7e-18 Score=183.37 Aligned_cols=243 Identities=16% Similarity=0.212 Sum_probs=168.8
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
.++.|++.++.+.. +|..+ ...+|+.|++.++.+. .++..+..+++|++|+|+++.....+|. +..+++|++|+|
T Consensus 590 ~Lr~L~~~~~~l~~--lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLRC--MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCCC--CCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence 46666666665544 34333 4567888888888776 4566677788888888887765446664 777888888888
Q ss_pred ecCcCCCCCCchhcc-CCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCccc
Q 037101 193 RFNYFTGSVPPQIFT-QNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGC 271 (395)
Q Consensus 193 s~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~ 271 (395)
++|.....+|..+.. ++|+.|++++|.....+|..+..++|++|++++|...+.+|.. ..+|++|++++|.+. .
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~ 739 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-E 739 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-c
Confidence 887665577776655 7888888888766667777665578888888888765555542 457888888888766 4
Q ss_pred Cchhh------------------------------cCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCCh
Q 037101 272 LPYEI------------------------------GYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVP 321 (395)
Q Consensus 272 ~~~~~------------------------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 321 (395)
+|..+ ...++|+.|++++|...+.+|.++.++++|+.|++++|...+.+|
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 44322 112467777777776666777778888888888888776556666
Q ss_pred hhhcCCCCCcEEEccCCcccccCCCCcCCCCCCEEEccCCCCCCCCC
Q 037101 322 EAVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 322 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~lp~ 368 (395)
..+ .+++|+.|++++|......+. ...+|+.|+|++|.|+.+|.
T Consensus 820 ~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~i~~iP~ 863 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTGIEEVPW 863 (1153)
T ss_pred CCC-CccccCEEECCCCCccccccc--cccccCEeECCCCCCccChH
Confidence 655 577888888887654333232 23578899999999998884
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=4.5e-20 Score=168.22 Aligned_cols=248 Identities=20% Similarity=0.205 Sum_probs=154.6
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccC-CCCCCCcchhhcCCCCCcEEE
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISN-NKFSGPFPAAVLGMNNLEFLD 191 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~ 191 (395)
..+.|+|..|+|+. +++++|..+++|+.|+|++|.|+.+-|++|..+..|.+|-+.+ |+|+......|++|.+|+.|.
T Consensus 68 ~tveirLdqN~I~~-iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISS-IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCccc-CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 67788888888887 6788888899999999999988888888888888887776655 888866666777787777777
Q ss_pred eecCcCCCCCCchhcc--CCCCeeeeccccCcccCCc-cccC-ccccEEEcccCCCCC----------------------
Q 037101 192 IRFNYFTGSVPPQIFT--QNLDFLFINNNGFMIKLPD-NIGS-THILFLTLANNKFIG---------------------- 245 (395)
Q Consensus 192 Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~-~~~~-~~L~~L~l~~n~l~~---------------------- 245 (395)
+.-|++. -++...+. ++|..|.+..|.+. .++. .+.. .+++.+.+..|.+..
T Consensus 147 lNan~i~-Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 147 LNANHIN-CIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred cChhhhc-chhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 7777776 44444443 66666666666665 2332 2222 455555555554210
Q ss_pred -CCchH------------HHh-cCCCCcEEEccCCcCcccC-chhhcCCCCCcEEEccCCcccccCchhccCCCCCCeee
Q 037101 246 -PLPRS------------IFK-AFSELTEVLLVNNQLTGCL-PYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLN 310 (395)
Q Consensus 246 -~~p~~------------~~~-~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 310 (395)
..|.. -|. .+..+..-..+.+...+.. ...|..+++|++|+|++|+|+++-+.+|.++..+++|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 00100 000 0001111111112122122 23466667777777777777766666777777777777
Q ss_pred cccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-CcCCCCCCEEEccCCCC
Q 037101 311 FANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFLIEKGVLDVRNNCI 363 (395)
Q Consensus 311 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~i 363 (395)
|..|++...-...|.++..|++|+|.+|+|+-+.+. |..+..|..|.|-.|.+
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 777776554445566677777777777777766553 56666666666666643
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=9.8e-20 Score=171.68 Aligned_cols=250 Identities=24% Similarity=0.228 Sum_probs=130.5
Q ss_pred EEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCC----CccccCCCCCCCEEEccCCCCCC------CcchhhcCCCC
Q 037101 117 IDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGT----ISSNIAKLPYLYELDISNNKFSG------PFPAAVLGMNN 186 (395)
Q Consensus 117 L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~~ 186 (395)
|+|..+.+++......+..+..|+.++++++.++.. ++..+...+.|++|+++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555555433444455555566666666655332 33334455556666666655541 12334555566
Q ss_pred CcEEEeecCcCCCCCCchhcc-C---CCCeeeeccccCcccC----CccccC--ccccEEEcccCCCCCCCchHH---Hh
Q 037101 187 LEFLDIRFNYFTGSVPPQIFT-Q---NLDFLFINNNGFMIKL----PDNIGS--THILFLTLANNKFIGPLPRSI---FK 253 (395)
Q Consensus 187 L~~L~Ls~n~l~~~~p~~~~~-~---~L~~L~L~~n~l~~~~----~~~~~~--~~L~~L~l~~n~l~~~~p~~~---~~ 253 (395)
|++|++++|.+.+..+..+.. . +|++|++++|++.+.. ...+.. ++|+.|++++|.+++.....+ +.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 666666666665333332222 2 2666666666554211 111111 356667777666663322211 22
Q ss_pred cCCCCcEEEccCCcCccc----CchhhcCCCCCcEEEccCCccccc----CchhccCCCCCCeeecccCcCCCCChhhhc
Q 037101 254 AFSELTEVLLVNNQLTGC----LPYEIGYLKEAVVFDVGDNQLTGQ----LPFSLACLEKVEQLNFANNLLFGMVPEAVC 325 (395)
Q Consensus 254 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 325 (395)
.+++|++|++++|.+++. ++..+..+++|+.|++++|.+++. +...+..+++|++|++++|.+.+.....+.
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 245677777777766632 223344455677777777766532 233345566677777777766542222222
Q ss_pred -----CCCCCcEEEccCCccccc-----CCCCcCCCCCCEEEccCCCCCCC
Q 037101 326 -----GLPNLLHFSLSDNYFTHA-----GPLCRFLIEKGVLDVRNNCIPDL 366 (395)
Q Consensus 326 -----~l~~L~~L~L~~N~l~~~-----~~~~~~l~~L~~L~L~~N~i~~l 366 (395)
..+.|+.|++++|.+++. ...+..+++|+++++++|.++.-
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 125677777777776521 11244556677777777776653
No 19
>PLN03150 hypothetical protein; Provisional
Probab=99.76 E-value=8.4e-18 Score=171.28 Aligned_cols=168 Identities=20% Similarity=0.326 Sum_probs=138.2
Q ss_pred CCCCCccccccchhh---hhhhhHHHHHHHHHHhccCCCCCCCCCCCCCCCC-----CcceeeeCCCCCCCccccEEEEE
Q 037101 47 LPPLPLKDEILQFAE---QRLAVVYPIIQEFKSIITSDPLGITKTWVGSDIC-----NYKGFYCESPPDNETAIAVASID 118 (395)
Q Consensus 47 ~~p~~~~~~~~~~~~---~~~~~~~~~l~~~k~~~~~~~~~~~~~W~~~~~C-----~w~gv~c~~~~~~~~~~~l~~L~ 118 (395)
.+|++||+||+++.. .+...+.+||+.+|..+. ++.. .+|.+ ++| .|.|+.|...... ....++.|+
T Consensus 350 s~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~-~~~~--~~W~g-~~C~p~~~~w~Gv~C~~~~~~-~~~~v~~L~ 424 (623)
T PLN03150 350 THAIINAIEVFEIITAESKTLLEEVSALQTLKSSLG-LPLR--FGWNG-DPCVPQQHPWSGADCQFDSTK-GKWFIDGLG 424 (623)
T ss_pred CcceeeeeeeeeccccccccCchHHHHHHHHHHhcC-Cccc--CCCCC-CCCCCcccccccceeeccCCC-CceEEEEEE
Confidence 369999999998766 456678999999999985 4322 37976 556 6999999642211 122689999
Q ss_pred cCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCC
Q 037101 119 FNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFT 198 (395)
Q Consensus 119 Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 198 (395)
|+++.+.+ .++..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|++++.+|..++++++|++|+|++|.++
T Consensus 425 L~~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 425 LDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred CCCCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 99999998 46777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhcc--CCCCeeeeccccC
Q 037101 199 GSVPPQIFT--QNLDFLFINNNGF 220 (395)
Q Consensus 199 ~~~p~~~~~--~~L~~L~L~~n~l 220 (395)
|.+|..+.. .++..+++.+|..
T Consensus 504 g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 504 GRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred ccCChHHhhccccCceEEecCCcc
Confidence 999987654 3455666666653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2.1e-19 Score=169.49 Aligned_cols=251 Identities=22% Similarity=0.181 Sum_probs=184.8
Q ss_pred cEEEEEcCCCCcCCC---CcccccCCCCCCcEEECCCCCCCC------CCccccCCCCCCCEEEccCCCCCCCcchhhcC
Q 037101 113 AVASIDFNGFQLSAP---TLDGFLDQLPDIALFHANSNNFAG------TISSNIAKLPYLYELDISNNKFSGPFPAAVLG 183 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~---~~~~~l~~l~~L~~L~l~~n~l~~------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 183 (395)
.++.|+++++.+++. .+...+...+++++++++++.+.+ .++..+..+++|++|++++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 588999999988542 244556778889999999988762 23456778899999999999998777777766
Q ss_pred CCC---CcEEEeecCcCCCCCCch----hc-c-CCCCeeeeccccCcccCCc----cccC-ccccEEEcccCCCCCCCch
Q 037101 184 MNN---LEFLDIRFNYFTGSVPPQ----IF-T-QNLDFLFINNNGFMIKLPD----NIGS-THILFLTLANNKFIGPLPR 249 (395)
Q Consensus 184 l~~---L~~L~Ls~n~l~~~~p~~----~~-~-~~L~~L~L~~n~l~~~~~~----~~~~-~~L~~L~l~~n~l~~~~p~ 249 (395)
+.+ |++|++++|++++..... +. . ++|+.|++++|.+++.... .+.. .+|++|++++|.+.+....
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 666 999999999987422221 11 1 6899999999998853322 2222 6899999999998854322
Q ss_pred HHHh---cCCCCcEEEccCCcCccc----CchhhcCCCCCcEEEccCCcccccCchhcc-----CCCCCCeeecccCcCC
Q 037101 250 SIFK---AFSELTEVLLVNNQLTGC----LPYEIGYLKEAVVFDVGDNQLTGQLPFSLA-----CLEKVEQLNFANNLLF 317 (395)
Q Consensus 250 ~~~~---~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~ 317 (395)
.+.. .+++|++|++++|.+++. +...+..+++|++|++++|.+++.....+. ..+.|++|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 2222 246999999999998743 344567789999999999999853333222 2479999999999996
Q ss_pred C----CChhhhcCCCCCcEEEccCCcccccCC-----CCcCC-CCCCEEEccCCCC
Q 037101 318 G----MVPEAVCGLPNLLHFSLSDNYFTHAGP-----LCRFL-IEKGVLDVRNNCI 363 (395)
Q Consensus 318 ~----~~p~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~l-~~L~~L~L~~N~i 363 (395)
+ .+...+..+++|+.+++++|.++.... .+... +.|+++++.+|.+
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 3 234556677899999999999996532 23444 6899999998864
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.74 E-value=3.2e-20 Score=169.23 Aligned_cols=246 Identities=20% Similarity=0.227 Sum_probs=191.9
Q ss_pred CCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeec-CcCCCCCCchhcc--CCCCeee
Q 037101 138 DIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRF-NYFTGSVPPQIFT--QNLDFLF 214 (395)
Q Consensus 138 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~--~~L~~L~ 214 (395)
.-..++|..|.|+..-+.+|+.+++|+.|||++|.|+.+-|++|.++++|..|-+.+ |+|+ .+|...|. ..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 567899999999977778899999999999999999999999999999998887776 9999 99998887 7899999
Q ss_pred eccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCc------------ccCchhhcCCCC
Q 037101 215 INNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLT------------GCLPYEIGYLKE 281 (395)
Q Consensus 215 L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~ 281 (395)
+.-|++.-...+.+.. +++..|.+..|.+. .++...+..+..++.+.+..|.+. ...|.+++....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 9999988555555555 78899999999988 777777777889999988887732 112223333322
Q ss_pred CcEEEccC-------------------------CcccccCc-hhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEc
Q 037101 282 AVVFDVGD-------------------------NQLTGQLP-FSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSL 335 (395)
Q Consensus 282 L~~L~Ls~-------------------------n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 335 (395)
..-..+.. +...+..| ..|..+++|+.|+|++|+++++-+.+|.+...++.|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 22222222 21222333 23788999999999999999998999999999999999
Q ss_pred cCCcccccCCC-CcCCCCCCEEEccCCCCCCCCCC----CCchhhhcccCCCCCC
Q 037101 336 SDNYFTHAGPL-CRFLIEKGVLDVRNNCIPDLPFQ----RSVAECADFFAHPRFC 385 (395)
Q Consensus 336 ~~N~l~~~~~~-~~~l~~L~~L~L~~N~i~~lp~~----~~~~~~~~~~~~~~~c 385 (395)
..|+|..+... |..+..|+.|+|.+|+|+.+-.- ........++.||+.|
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 99999877554 88999999999999999985321 1223456788888644
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=2.3e-19 Score=146.39 Aligned_cols=154 Identities=26% Similarity=0.469 Sum_probs=88.7
Q ss_pred CCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCee
Q 037101 134 DQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFL 213 (395)
Q Consensus 134 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L 213 (395)
-.+.+++.|.+++|+++ .+|+.+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. .+|..+
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-------- 98 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-------- 98 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc--------
Confidence 34556666666777666 45556666666777777766666 56666666667776666666665 444443
Q ss_pred eeccccCcccCCccccC-ccccEEEcccCCCCC-CCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCc
Q 037101 214 FINNNGFMIKLPDNIGS-THILFLTLANNKFIG-PLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQ 291 (395)
Q Consensus 214 ~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 291 (395)
+. +.|+.||+++|.+.. .+|..+|. +..|+.|+++.|.+. .+|..++.+++|+.|.+..|.
T Consensus 99 ---------------gs~p~levldltynnl~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 99 ---------------GSFPALEVLDLTYNNLNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred ---------------CCCchhhhhhccccccccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 33 344444444444332 24444444 555555555555555 555555555555555555555
Q ss_pred ccccCchhccCCCCCCeeecccCcC
Q 037101 292 LTGQLPFSLACLEKVEQLNFANNLL 316 (395)
Q Consensus 292 l~~~~p~~l~~l~~L~~L~Ls~N~l 316 (395)
+- .+|..++.+..|++|.+.+|++
T Consensus 162 ll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hh-hCcHHHHHHHHHHHHhccccee
Confidence 55 4555555555555555555555
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.9e-19 Score=145.81 Aligned_cols=186 Identities=25% Similarity=0.375 Sum_probs=141.6
Q ss_pred CCCccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCC
Q 037101 107 DNETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNN 186 (395)
Q Consensus 107 ~~~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 186 (395)
...+...++.|.||+|.++. .+..++.+.+|+.|++.+|++. .+|.+++.+++|+.|+++-|++. .+|..|+.++.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 34455689999999999997 5666999999999999999998 78889999999999999999999 89999999999
Q ss_pred CcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccC
Q 037101 187 LEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVN 265 (395)
Q Consensus 187 L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~ 265 (395)
|+.|||++|.+... .+|..|+. +.|+.|+++.|.+. .+|..+.+ +++|+.|.+..
T Consensus 104 levldltynnl~e~----------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~-lt~lqil~lrd 159 (264)
T KOG0617|consen 104 LEVLDLTYNNLNEN----------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK-LTNLQILSLRD 159 (264)
T ss_pred hhhhhccccccccc----------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhh-hcceeEEeecc
Confidence 99999999998732 23333332 45555566666655 67777666 77788888877
Q ss_pred CcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCC---CCeeecccCcCCCCChh
Q 037101 266 NQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEK---VEQLNFANNLLFGMVPE 322 (395)
Q Consensus 266 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~~~p~ 322 (395)
|.+- .+|.+++.++.|+.|.+.+|+++ .+|..++.+.- =+.+.+.+|.....+.+
T Consensus 160 ndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 160 NDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred Cchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 7777 67777888888888888888887 66666655432 24455556665444443
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.54 E-value=3.5e-16 Score=148.98 Aligned_cols=193 Identities=23% Similarity=0.397 Sum_probs=153.9
Q ss_pred CCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeee
Q 037101 136 LPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFI 215 (395)
Q Consensus 136 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L 215 (395)
+..-...+++.|++. ++|..+..+..|+.+.|.+|.+. .+|..+.++..|.+|||+.|+++ .+|..++.--|+.|-+
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIV 150 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEE
Confidence 344456677888877 77878888888888888888888 88888999999999999999998 8888888888899999
Q ss_pred ccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccc
Q 037101 216 NNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTG 294 (395)
Q Consensus 216 ~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 294 (395)
++|+++ .+|+.++. ..|..|+.+.|.+. .+|..+.. +.+|+.|.+..|++. .+|.++..+ .|..||++.|++.
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~-l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY-LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS- 224 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh-HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-
Confidence 998887 77877777 78888899999888 78887776 788888899888888 677777755 4888999999998
Q ss_pred cCchhccCCCCCCeeecccCcCCCCChhhhcCCCC---CcEEEccCC
Q 037101 295 QLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPN---LLHFSLSDN 338 (395)
Q Consensus 295 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~N 338 (395)
.+|..|.+|+.|++|-|.+|.+.. .|..++..-+ .++|+..-+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 888888999999999999998855 4555554333 334444444
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.53 E-value=4.8e-16 Score=148.09 Aligned_cols=183 Identities=30% Similarity=0.432 Sum_probs=102.0
Q ss_pred CCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEcc
Q 037101 160 LPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLA 239 (395)
Q Consensus 160 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~ 239 (395)
+..-...|++.|++. .+|..+..+..|+.+.|..|.+- .+|..+..- ..|++|+++
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L----------------------~~lt~l~ls 129 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNL----------------------EALTFLDLS 129 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhh----------------------hHHHHhhhc
Confidence 334455666666666 66666666666666666666665 555444430 344455555
Q ss_pred cCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCC
Q 037101 240 NNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGM 319 (395)
Q Consensus 240 ~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 319 (395)
.|+++ .+|..++. + -|+.|.+++|+++ .+|..++.+.+|..||.+.|.+. .+|..+..+.+|+.|++..|.+..
T Consensus 130 ~NqlS-~lp~~lC~-l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~- 203 (722)
T KOG0532|consen 130 SNQLS-HLPDGLCD-L-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED- 203 (722)
T ss_pred cchhh-cCChhhhc-C-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-
Confidence 55544 55555543 2 3555555555555 55555555555555666666555 555555555556666666555532
Q ss_pred ChhhhcCCCCCcEEEccCCcccccCCCCcCCCCCCEEEccCCCCCCCCCCCCch
Q 037101 320 VPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPDLPFQRSVA 373 (395)
Q Consensus 320 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~lp~~~~~~ 373 (395)
+|..++.+ .|..||+++|+++.++..|.+|+.|++|-|.+|.++.-|+|+..+
T Consensus 204 lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~k 256 (722)
T KOG0532|consen 204 LPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEK 256 (722)
T ss_pred CCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhc
Confidence 34444432 355566666666555555566666666666666655555444333
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.41 E-value=3.5e-13 Score=130.99 Aligned_cols=196 Identities=30% Similarity=0.433 Sum_probs=139.3
Q ss_pred EEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCC-CCCEEEccCCCCCCCcchhhcCCCCCcEEEeec
Q 037101 116 SIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLP-YLYELDISNNKFSGPFPAAVLGMNNLEFLDIRF 194 (395)
Q Consensus 116 ~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 194 (395)
.++++.+.+.. ....+..++.++.+++.+|.++ .++.....+. +|++|++++|.+. .+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeecccccccc--CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 57777777643 2223555678888999888887 5565666664 8999999999988 6666788899999999999
Q ss_pred CcCCCCCCchh-ccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccC
Q 037101 195 NYFTGSVPPQI-FTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCL 272 (395)
Q Consensus 195 n~l~~~~p~~~-~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~ 272 (395)
|+++ .+|... ..+.|+.|++++|++. .+|..+.. ..|++|.+++|.+. ..+..+.. +.++..+.+.+|++. .+
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~-~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN-LKNLSGLELSNNKLE-DL 247 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh-cccccccccCCceee-ec
Confidence 9998 777766 5578888888888877 56665544 45777888777544 34444443 667777777777766 44
Q ss_pred chhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChh
Q 037101 273 PYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPE 322 (395)
Q Consensus 273 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 322 (395)
+..++.++.+++|++++|.++ .++. +..+.+++.|++++|.+....+.
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 566677777888888888777 3433 67777778888877777655443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.40 E-value=4.9e-13 Score=130.03 Aligned_cols=195 Identities=30% Similarity=0.400 Sum_probs=101.4
Q ss_pred EEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCC-CCcEEEeecCcCCCCCCchhcc-CCCCeeeeccc
Q 037101 141 LFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMN-NLEFLDIRFNYFTGSVPPQIFT-QNLDFLFINNN 218 (395)
Q Consensus 141 ~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n 218 (395)
.+.+..+.+...+ ..+..++.++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+.. ++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4555555553222 22344466667777777666 5555555553 6777777777666 55433332 56666666666
Q ss_pred cCcccCCccc-cCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCc
Q 037101 219 GFMIKLPDNI-GSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLP 297 (395)
Q Consensus 219 ~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 297 (395)
++. .++... ..+.|+.|++++|++. .+|..+.. ...|++|.+++|.+. ..+..+..+.++..+.+.+|++. .++
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 665 344333 2255555555555555 55544321 234555555555433 33344455555555555555554 334
Q ss_pred hhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC
Q 037101 298 FSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP 345 (395)
Q Consensus 298 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 345 (395)
..+..+..++.|++++|.++... . +..+.+++.|++++|.+...++
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~-~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSIS-S-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceeccccccccccc-c-ccccCccCEEeccCccccccch
Confidence 44555555555555555553322 2 4555555555555555554433
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.30 E-value=5.5e-13 Score=118.39 Aligned_cols=206 Identities=16% Similarity=0.090 Sum_probs=136.7
Q ss_pred ccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccc-cCcccCCccccC-c
Q 037101 154 SSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNN-GFMIKLPDNIGS-T 231 (395)
Q Consensus 154 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n-~l~~~~~~~~~~-~ 231 (395)
|-.+.-+++|+.+.++++.-. .+-+-...-+.|+++.+.+..+. ..|..+....+.....+.- ...|..-..+.. .
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVPSLLPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred ccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-ccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence 333444566666666665433 22222222356666666655554 3333222222222221111 112222222222 5
Q ss_pred cccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeec
Q 037101 232 HILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNF 311 (395)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 311 (395)
.|+++|+++|.++ .+..++.- .+.++.|+++.|.+. .+. .+..+.+|+.||||+|.++ .+..+-..+-+++.|.|
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL-~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKL-APKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhhhhh-ccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 7889999999988 77766543 789999999999988 333 3788899999999999998 56666667889999999
Q ss_pred ccCcCCCCChhhhcCCCCCcEEEccCCcccccC--CCCcCCCCCCEEEccCCCCCCCCC
Q 037101 312 ANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAG--PLCRFLIEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 312 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--~~~~~l~~L~~L~L~~N~i~~lp~ 368 (395)
++|.+... ..+..+-+|..||+++|+|.... ..++++|-|+.+.|.+|.+..+|.
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 99998442 45677788999999999998753 358899999999999999999874
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=5.2e-13 Score=123.97 Aligned_cols=207 Identities=21% Similarity=0.235 Sum_probs=114.8
Q ss_pred cCCCCCCcEEECCCCCCCCCCc-cccCCCCCCCEEEccCCCCCCC--cchhhcCCCCCcEEEeecCcCCCCCCchh--cc
Q 037101 133 LDQLPDIALFHANSNNFAGTIS-SNIAKLPYLYELDISNNKFSGP--FPAAVLGMNNLEFLDIRFNYFTGSVPPQI--FT 207 (395)
Q Consensus 133 l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~ 207 (395)
-+++.+|+.+.|.+..+....- .....|++++.|||+.|-+... +.....+|++|+.|+|+.|++.-...... ..
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3567788888888777652211 3466788999999999887743 33456788999999999998862221111 11
Q ss_pred CCCCeeeeccccCcccCCccccC--ccccEEEcccCCCCC--CCchHHHhcCCCCcEEEccCCcCcccC-chhhcCCCCC
Q 037101 208 QNLDFLFINNNGFMIKLPDNIGS--THILFLTLANNKFIG--PLPRSIFKAFSELTEVLLVNNQLTGCL-PYEIGYLKEA 282 (395)
Q Consensus 208 ~~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L 282 (395)
+.|+.|.++.|.++...-..+.. ++|+.|++..|.... ..+..+ +..|++|+|++|++-... -...+.++.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i---~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI---LQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh---hhHHhhccccCCcccccccccccccccch
Confidence 56777777777766322211111 566666666663211 122222 345666666666654211 1234556666
Q ss_pred cEEEccCCccccc-Cchh-----ccCCCCCCeeecccCcCCCC-ChhhhcCCCCCcEEEccCCcccc
Q 037101 283 VVFDVGDNQLTGQ-LPFS-----LACLEKVEQLNFANNLLFGM-VPEAVCGLPNLLHFSLSDNYFTH 342 (395)
Q Consensus 283 ~~L~Ls~n~l~~~-~p~~-----l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~ 342 (395)
+.|+++.+.+... .|+. ...+++|++|+++.|++... --..+..+++|+.|.+..|+++.
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 6666666665532 1111 13445666666666665221 01223344555555555555554
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=8.9e-13 Score=119.32 Aligned_cols=241 Identities=20% Similarity=0.202 Sum_probs=145.5
Q ss_pred cEEEEEcCCCCcCCC---CcccccCCCCCCcEEECCCCCCCCC----Cccc-------cCCCCCCCEEEccCCCCCCCcc
Q 037101 113 AVASIDFNGFQLSAP---TLDGFLDQLPDIALFHANSNNFAGT----ISSN-------IAKLPYLYELDISNNKFSGPFP 178 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~---~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~-------~~~l~~L~~L~Ls~n~l~~~~p 178 (395)
.++.|+|++|.+... .+...+.+.++|+..++++- ++|. +|.+ +...++|++||||+|.|.-..+
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 566677777666431 12333455556666555432 2222 2222 2234455555555555542222
Q ss_pred h----hhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCC---chH
Q 037101 179 A----AVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPL---PRS 250 (395)
Q Consensus 179 ~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~---p~~ 250 (395)
. -+.++..|++|.|.+|.+. ..-......-|..|. .+ ...+. +.|+++...+|++...- -..
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga~~~A~ 179 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELA--VN-------KKAASKPKLRVFICGRNRLENGGATALAE 179 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHH--HH-------hccCCCcceEEEEeeccccccccHHHHHH
Confidence 2 2234455555555555443 111111001122222 11 11122 58999999999876322 223
Q ss_pred HHhcCCCCcEEEccCCcCcc----cCchhhcCCCCCcEEEccCCccccc----CchhccCCCCCCeeecccCcCCCCChh
Q 037101 251 IFKAFSELTEVLLVNNQLTG----CLPYEIGYLKEAVVFDVGDNQLTGQ----LPFSLACLEKVEQLNFANNLLFGMVPE 322 (395)
Q Consensus 251 ~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 322 (395)
.++..+.|+++.+..|.|.- .+...+..+++|+.|||..|.++.. +...+..+++|++|++++|.+......
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 45557899999999998752 2345678899999999999998832 334566788999999999999765443
Q ss_pred hh-----cCCCCCcEEEccCCcccccCC-----CCcCCCCCCEEEccCCCCC
Q 037101 323 AV-----CGLPNLLHFSLSDNYFTHAGP-----LCRFLIEKGVLDVRNNCIP 364 (395)
Q Consensus 323 ~~-----~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~L~~L~L~~N~i~ 364 (395)
.| ...++|+.+.+.+|.|+.... .+...+.|..|+|++|.+.
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 33 246899999999999986422 2456889999999999993
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.4e-12 Score=119.68 Aligned_cols=207 Identities=16% Similarity=0.231 Sum_probs=113.5
Q ss_pred cccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCC--ccccCCCCCCCEEEccCCCCCCCcchh-hcCCCCC
Q 037101 111 AIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTI--SSNIAKLPYLYELDISNNKFSGPFPAA-VLGMNNL 187 (395)
Q Consensus 111 ~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L 187 (395)
...++.+.|.+..............+++++.|+|++|-+.... ..-...|++|+.|+|+.|++.-..... -..+++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3466666776666654322245666777777777777665432 233456777777777777766222111 1245677
Q ss_pred cEEEeecCcCCCCCCchh--ccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCch-HHHhcCCCCcEEEc
Q 037101 188 EFLDIRFNYFTGSVPPQI--FTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPR-SIFKAFSELTEVLL 263 (395)
Q Consensus 188 ~~L~Ls~n~l~~~~p~~~--~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~-~~~~~l~~L~~L~l 263 (395)
+.|.|+.|.++..--..+ ..++|+.|++.+|............ ..|+.|+|++|.+. .++. ..-..++.|..|++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhc
Confidence 777777777651110111 1167777777777421111111111 56777777777766 3331 11223666777777
Q ss_pred cCCcCcccC-chh-----hcCCCCCcEEEccCCccccc-CchhccCCCCCCeeecccCcCCC
Q 037101 264 VNNQLTGCL-PYE-----IGYLKEAVVFDVGDNQLTGQ-LPFSLACLEKVEQLNFANNLLFG 318 (395)
Q Consensus 264 ~~n~l~~~~-~~~-----~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~ 318 (395)
+.+.+...- |+. ...+++|++|+++.|+|... .-..+..+++|+.|.+..|.+..
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 777665321 211 24456777777777777421 11234455666777777776644
No 32
>PLN03150 hypothetical protein; Provisional
Probab=99.18 E-value=8.9e-11 Score=120.01 Aligned_cols=105 Identities=24% Similarity=0.413 Sum_probs=66.0
Q ss_pred CcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccC
Q 037101 258 LTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSD 337 (395)
Q Consensus 258 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 337 (395)
++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CcccccCCC-CcC-CCCCCEEEccCCC
Q 037101 338 NYFTHAGPL-CRF-LIEKGVLDVRNNC 362 (395)
Q Consensus 338 N~l~~~~~~-~~~-l~~L~~L~L~~N~ 362 (395)
|.+++..|. +.. +.++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 666655443 332 2345566666664
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=2.7e-11 Score=102.65 Aligned_cols=121 Identities=24% Similarity=0.294 Sum_probs=35.4
Q ss_pred cccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhc-cCCCCCCeee
Q 037101 232 HILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSL-ACLEKVEQLN 310 (395)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~ 310 (395)
++++|++.+|.+. .+. .+...+.+|+.|++++|.++. +. .+..++.|++|++++|+|+. +...+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 3444555555444 222 222224556666666666652 22 34556666666666666663 32222 2456666666
Q ss_pred cccCcCCCCC-hhhhcCCCCCcEEEccCCcccccCC----CCcCCCCCCEEE
Q 037101 311 FANNLLFGMV-PEAVCGLPNLLHFSLSDNYFTHAGP----LCRFLIEKGVLD 357 (395)
Q Consensus 311 Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L~~L~ 357 (395)
+++|+|...- -..+..+++|+.|++.+|.++.... .+..+|+|+.||
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 6666664321 1334556666666666666665422 134566666655
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=7.3e-11 Score=100.05 Aligned_cols=109 Identities=27% Similarity=0.344 Sum_probs=45.0
Q ss_pred CCCCcEEEccCCcCcccCchhhc-CCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEE
Q 037101 255 FSELTEVLLVNNQLTGCLPYEIG-YLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHF 333 (395)
Q Consensus 255 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 333 (395)
..++++|+|.+|.|+ .+. .++ .+.+|+.|++++|.|+. +. .+..+++|++|++++|+|+...+.....+++|+.|
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 457899999999998 443 455 57899999999999994 43 57889999999999999976533223468999999
Q ss_pred EccCCcccccCC--CCcCCCCCCEEEccCCCCCCCC
Q 037101 334 SLSDNYFTHAGP--LCRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 334 ~L~~N~l~~~~~--~~~~l~~L~~L~L~~N~i~~lp 367 (395)
++++|+|..... .+..+++|+.|+|.+|.++..+
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence 999999987644 4789999999999999988643
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=2.6e-11 Score=107.82 Aligned_cols=185 Identities=19% Similarity=0.171 Sum_probs=128.3
Q ss_pred CcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEccc-CCCCCCCchHHHhc
Q 037101 176 PFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLAN-NKFIGPLPRSIFKA 254 (395)
Q Consensus 176 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~-n~l~~~~p~~~~~~ 254 (395)
.+|-.+.-+.+|..+.++.+.-.....-....+.|+++.+.+..+. ..|..+....+....... ....|..-..+-.
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~-~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dT- 282 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQ-DVPSLLPETILADPSGSEPSTSNGSALVSADT- 282 (490)
T ss_pred ccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccc-ccccccchhhhcCccCCCCCccCCceEEecch-
Confidence 4555566678888888888765522222233478888888776554 222222222222111111 1112222222211
Q ss_pred CCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEE
Q 037101 255 FSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFS 334 (395)
Q Consensus 255 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 334 (395)
+..|+++|+++|.|+ .+.++..-++.++.|++|.|.|. .+ ..+..+++|+.|||++|.++. +..+-..+-++++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence 457999999999999 78888888999999999999998 33 348899999999999999854 445666788999999
Q ss_pred ccCCcccccCCCCcCCCCCCEEEccCCCCCCCC
Q 037101 335 LSDNYFTHAGPLCRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 335 L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~lp 367 (395)
|+.|.|... ..++.+-+|..||+++|+|..+.
T Consensus 359 La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 359 LAQNKIETL-SGLRKLYSLVNLDLSSNQIEELD 390 (490)
T ss_pred hhhhhHhhh-hhhHhhhhheeccccccchhhHH
Confidence 999998754 34788899999999999998754
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.04 E-value=4.9e-11 Score=108.16 Aligned_cols=224 Identities=21% Similarity=0.251 Sum_probs=149.5
Q ss_pred cccCCCCCCcEEECCCCCCCCC----CccccCCCCCCCEEEccCCC---CCCCcch-------hhcCCCCCcEEEeecCc
Q 037101 131 GFLDQLPDIALFHANSNNFAGT----ISSNIAKLPYLYELDISNNK---FSGPFPA-------AVLGMNNLEFLDIRFNY 196 (395)
Q Consensus 131 ~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~---l~~~~p~-------~l~~l~~L~~L~Ls~n~ 196 (395)
..+..+..++++++++|.+... +...+.+.++|+..++++-- +...+|+ .+...++|++||||+|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3355677888888888887533 44556677788888887632 2223443 34455788888888888
Q ss_pred CCCCCCchhcc-----CCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCccc
Q 037101 197 FTGSVPPQIFT-----QNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGC 271 (395)
Q Consensus 197 l~~~~p~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~ 271 (395)
+.-..+..+.. ..|++|+|.+|.+.-.--..++ ..|..|. .++ .+ ..-+.|+.+...+|++...
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~-~al~~l~--~~k---k~-----~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG-RALFELA--VNK---KA-----ASKPKLRVFICGRNRLENG 172 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH-HHHHHHH--HHh---cc-----CCCcceEEEEeeccccccc
Confidence 86444443322 5666677766665411111111 1222222 111 11 1246899999999998633
Q ss_pred ----CchhhcCCCCCcEEEccCCccccc----CchhccCCCCCCeeecccCcCCCC----ChhhhcCCCCCcEEEccCCc
Q 037101 272 ----LPYEIGYLKEAVVFDVGDNQLTGQ----LPFSLACLEKVEQLNFANNLLFGM----VPEAVCGLPNLLHFSLSDNY 339 (395)
Q Consensus 272 ----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~ 339 (395)
+...|...+.|+.+.++.|.|... +-..+..+++|+.|||++|-++.. +...+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 234567778999999999988632 234578899999999999998654 34457788999999999999
Q ss_pred ccccCC-----CC-cCCCCCCEEEccCCCCCC
Q 037101 340 FTHAGP-----LC-RFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 340 l~~~~~-----~~-~~l~~L~~L~L~~N~i~~ 365 (395)
+..... .+ ...|+|++|.+.+|.|+.
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 986543 12 458999999999999885
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=6.2e-11 Score=115.84 Aligned_cols=239 Identities=17% Similarity=0.178 Sum_probs=151.3
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
.+..+++..|.+.. ....+..+.+|+.+++.+|.+... ...+..+++|++|++++|.|+...+ +..++.|+.|++
T Consensus 73 ~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l 147 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL 147 (414)
T ss_pred hHHhhccchhhhhh--hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence 55566666666654 233367778888888888888743 2226677888888888888884332 566777888888
Q ss_pred ecCcCCCCCCchhccCCCCeeeeccccCcccCCc-cccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCccc
Q 037101 193 RFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPD-NIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGC 271 (395)
Q Consensus 193 s~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~ 271 (395)
++|.++ .+...-....|+.+++++|++...-+. .-...+++.+++.+|.+. .+... ..+..+..+++..|.++..
T Consensus 148 ~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~-~i~~~--~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 148 SGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR-EIEGL--DLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred ccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh-cccch--HHHHHHHHhhcccccceec
Confidence 888887 565544457788888888877633331 122267777777777765 22211 1123444556677776622
Q ss_pred CchhhcCCC--CCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCccccc---CC-
Q 037101 272 LPYEIGYLK--EAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHA---GP- 345 (395)
Q Consensus 272 ~~~~~~~l~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~~- 345 (395)
-+ +..+. .|+.+++++|++. ..+..+..+..+..|++.+|++... ..+.....+..+.+..|.+... ..
T Consensus 224 ~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (414)
T KOG0531|consen 224 EG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQE 298 (414)
T ss_pred cC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcc
Confidence 21 11222 3778888888877 4445566777888888888877543 2344556677777777776532 11
Q ss_pred -CCcCCCCCCEEEccCCCCCC
Q 037101 346 -LCRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 346 -~~~~l~~L~~L~L~~N~i~~ 365 (395)
.....+.+..+.+.+|.+..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 299 YITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccccccccccccCcccc
Confidence 14566777788888887776
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.95 E-value=1.1e-10 Score=114.14 Aligned_cols=218 Identities=20% Similarity=0.295 Sum_probs=122.0
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLD 191 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 191 (395)
..++.|++.+|.+.. +...+..+++|++|++++|.|+...+ +..++.|+.|++++|.++ .+. .+..++.|+.++
T Consensus 95 ~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLD 168 (414)
T ss_pred cceeeeeccccchhh--cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcch-hcc-CCccchhhhccc
Confidence 467777777777765 22225567777777777777764432 455566777777777776 222 244567777777
Q ss_pred eecCcCCCCCCch--hccCCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCC--CCcEEEccCCc
Q 037101 192 IRFNYFTGSVPPQ--IFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFS--ELTEVLLVNNQ 267 (395)
Q Consensus 192 Ls~n~l~~~~p~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~--~L~~L~l~~n~ 267 (395)
+++|++. .+... -...+++.+++.+|.+.. +...-....+..+++..|.+. .+-. +.. +. .|+++++++|+
T Consensus 169 l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~-i~~~~~~~~l~~~~l~~n~i~-~~~~-l~~-~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 169 LSYNRIV-DIENDELSELISLEELDLGGNSIRE-IEGLDLLKKLVLLSLLDNKIS-KLEG-LNE-LVMLHLRELYLSGNR 243 (414)
T ss_pred CCcchhh-hhhhhhhhhccchHHHhccCCchhc-ccchHHHHHHHHhhcccccce-eccC-ccc-chhHHHHHHhcccCc
Confidence 7777776 44442 333667777777776551 111111134444466666655 2111 000 12 26677777777
Q ss_pred CcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCC---Chhh-hcCCCCCcEEEccCCccccc
Q 037101 268 LTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGM---VPEA-VCGLPNLLHFSLSDNYFTHA 343 (395)
Q Consensus 268 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~-~~~l~~L~~L~L~~N~l~~~ 343 (395)
+. ..+..+..+..+..|++.+|++... ..+.....+..+....|.+... .... ....+.++.+.+..|.+...
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 66 3334455666777777777776632 1233445566666666665421 1111 34456667777777766554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=2.2e-09 Score=74.93 Aligned_cols=39 Identities=36% Similarity=0.417 Sum_probs=14.6
Q ss_pred hhcCCCCCcEEEccCCcccccCCC-CcCCCCCCEEEccCC
Q 037101 323 AVCGLPNLLHFSLSDNYFTHAGPL-CRFLIEKGVLDVRNN 361 (395)
Q Consensus 323 ~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N 361 (395)
.|..+++|++|++++|.++.+++. |..+++|++|++++|
T Consensus 20 ~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 20 SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 333333333333333333333321 333333333333333
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=2.2e-09 Score=74.88 Aligned_cols=61 Identities=28% Similarity=0.483 Sum_probs=46.1
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcC
Q 037101 137 PDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYF 197 (395)
Q Consensus 137 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 197 (395)
++|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777755556777788888888888888766667778888888888888764
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.80 E-value=7.2e-11 Score=116.08 Aligned_cols=129 Identities=21% Similarity=0.240 Sum_probs=84.0
Q ss_pred ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchh-ccCCCCCCee
Q 037101 231 THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFS-LACLEKVEQL 309 (395)
Q Consensus 231 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L 309 (395)
..|...+++.|.+. .+...+ +.++.|+.|+|+.|+++..- .+..+++|++|||+.|.+. .+|.. ...+ +|+.|
T Consensus 164 n~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L 237 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLL 237 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheee
Confidence 45666666666665 444433 33667777778877777442 5677777888888888777 44432 2233 37778
Q ss_pred ecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC--CCcCCCCCCEEEccCCCCCCCC
Q 037101 310 NFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP--LCRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 310 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~L~~N~i~~lp 367 (395)
.+++|.++.. ..+.++.+|+.||+++|-|.+... .++.+..|+.|.|.||.+.--|
T Consensus 238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred eecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 8888877543 346677777888888887776432 2566677777788888766543
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.78 E-value=7.4e-09 Score=108.69 Aligned_cols=250 Identities=16% Similarity=0.183 Sum_probs=115.4
Q ss_pred cccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCC--CCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 037101 111 AIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNN--FAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLE 188 (395)
Q Consensus 111 ~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~--l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 188 (395)
+..+++..+-+|.+.. .... ...++|+.|-+..|. +.......|..++.|++|||++|.=-+.+|..++.|-+|+
T Consensus 522 ~~~~rr~s~~~~~~~~--~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEH--IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred hhheeEEEEeccchhh--ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3445555555554432 1111 122345555555553 2222223355555666666665544445565566666666
Q ss_pred EEEeecCcCCCCCCchhcc-CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCC--CCchHHHhcCCCCcEEEc-
Q 037101 189 FLDIRFNYFTGSVPPQIFT-QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIG--PLPRSIFKAFSELTEVLL- 263 (395)
Q Consensus 189 ~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~l- 263 (395)
+|++++..+. .+|..+.. +.|.+|++..+.....++..... ++|++|.+....... ..-..+ ..+.+|+.+..
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSIT 676 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheee
Confidence 6666666555 55555554 55555555555543333333332 555555554433110 011111 11222222222
Q ss_pred -------------------------cCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccC------CCCCCeeecc
Q 037101 264 -------------------------VNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLAC------LEKVEQLNFA 312 (395)
Q Consensus 264 -------------------------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~------l~~L~~L~Ls 312 (395)
.++... ..+..+..+.+|+.|.+.++.+......+... ++++..+...
T Consensus 677 ~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~ 755 (889)
T KOG4658|consen 677 ISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSIL 755 (889)
T ss_pred cchhHhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhh
Confidence 121211 23344555666666666666654222111111 1122222222
Q ss_pred cCcCCCCChhhhcCCCCCcEEEccCCccc-ccCCCCcCCCCCCEEEccCCCCCCCC
Q 037101 313 NNLLFGMVPEAVCGLPNLLHFSLSDNYFT-HAGPLCRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 313 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~~~~~~l~~L~~L~L~~N~i~~lp 367 (395)
++... ..+.+.--.++|+.|++..+... ++++....+..++.+.+..+.+.+++
T Consensus 756 ~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~ 810 (889)
T KOG4658|consen 756 NCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLR 810 (889)
T ss_pred ccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccce
Confidence 22211 11222334578888888876544 44555566666666667777666654
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.72 E-value=9e-09 Score=108.03 Aligned_cols=245 Identities=15% Similarity=0.107 Sum_probs=156.6
Q ss_pred ccEEEEEcCCCCc-CCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 037101 112 IAVASIDFNGFQL-SAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFL 190 (395)
Q Consensus 112 ~~l~~L~Ls~~~l-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 190 (395)
..+++|-+.+|.. ...+..++|..++.|+.||+++|.--+.+|..+++|-+|++|+++++.+. .+|..+.+|+.|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 4788888888862 22245667899999999999998877889999999999999999999999 899999999999999
Q ss_pred EeecCcCCCCCCchhc-cCCCCeeeeccccCcc--cCCccccC-ccccEEEccc--------------------------
Q 037101 191 DIRFNYFTGSVPPQIF-TQNLDFLFINNNGFMI--KLPDNIGS-THILFLTLAN-------------------------- 240 (395)
Q Consensus 191 ~Ls~n~l~~~~p~~~~-~~~L~~L~L~~n~l~~--~~~~~~~~-~~L~~L~l~~-------------------------- 240 (395)
++..+.....+|.... ..+|++|.+....... ..-..+.. .+|+.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~ 703 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG 703 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc
Confidence 9999886645554444 3889999887654211 00011111 2222222211
Q ss_pred CCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcC------CCCCcEEEccCCcccccCchhccCCCCCCeeecccC
Q 037101 241 NKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGY------LKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANN 314 (395)
Q Consensus 241 n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 314 (395)
+... ..+..+. .+.+|+.|.+.++.+.......... ++++..+...++..- ..+.+..-.++|+.|.+.++
T Consensus 704 ~~~~-~~~~~~~-~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 704 CSKR-TLISSLG-SLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSC 780 (889)
T ss_pred cccc-eeecccc-cccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecc
Confidence 1111 1222222 3788999999998886332211111 122222222232222 23344445689999999999
Q ss_pred cCCCCChhhhcCCCCCcEEEccCCccccc--CCCCcCCCCCCEEEccC
Q 037101 315 LLFGMVPEAVCGLPNLLHFSLSDNYFTHA--GPLCRFLIEKGVLDVRN 360 (395)
Q Consensus 315 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~L~~ 360 (395)
.....+......+..+..+-+..+.+.+. ......++++..+.+.+
T Consensus 781 ~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~ 828 (889)
T KOG4658|consen 781 RLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF 828 (889)
T ss_pred cccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence 87776666666666676666777766665 23344555544444443
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.68 E-value=5.4e-09 Score=92.06 Aligned_cols=135 Identities=19% Similarity=0.132 Sum_probs=91.0
Q ss_pred ccccEEEcccCCCCCCCchHH----HhcCCCCcEEEccCCcCccc-----CchhhcCCCCCcEEEccCCccccc----Cc
Q 037101 231 THILFLTLANNKFIGPLPRSI----FKAFSELTEVLLVNNQLTGC-----LPYEIGYLKEAVVFDVGDNQLTGQ----LP 297 (395)
Q Consensus 231 ~~L~~L~l~~n~l~~~~p~~~----~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~p 297 (395)
+.|+......|++. ..+... ++.-..|+++.+..|.|.-. +...+..+.+|+.|||..|.++.. +.
T Consensus 157 p~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 157 PKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 67888888888876 333322 33235788888888877532 122345578899999999988732 22
Q ss_pred hhccCCCCCCeeecccCcCCCCChhhh----c--CCCCCcEEEccCCcccccCC------CC--cCCCCCCEEEccCCCC
Q 037101 298 FSLACLEKVEQLNFANNLLFGMVPEAV----C--GLPNLLHFSLSDNYFTHAGP------LC--RFLIEKGVLDVRNNCI 363 (395)
Q Consensus 298 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~----~--~l~~L~~L~L~~N~l~~~~~------~~--~~l~~L~~L~L~~N~i 363 (395)
..+...+.|+.|.+.+|-++......+ . ..++|+.|...+|.+.+... .+ ..+|-|..|.+.+|.|
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 334456778999999998866544332 2 35889999999998765322 11 4667777888899988
Q ss_pred CCC
Q 037101 364 PDL 366 (395)
Q Consensus 364 ~~l 366 (395)
...
T Consensus 316 ~E~ 318 (388)
T COG5238 316 KEL 318 (388)
T ss_pred hhH
Confidence 874
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.54 E-value=1.8e-09 Score=106.44 Aligned_cols=106 Identities=22% Similarity=0.244 Sum_probs=87.3
Q ss_pred CCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhh-hcCCCCCcEEE
Q 037101 256 SELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEA-VCGLPNLLHFS 334 (395)
Q Consensus 256 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~ 334 (395)
..|...+.++|.+. .+..++.-++.|+.|+|++|+++.. ..+..+++|++|||++|.+.. +|.. ...+ +|..|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhh-hheeee
Confidence 46888899999998 7778888899999999999999844 378899999999999999944 4432 2233 499999
Q ss_pred ccCCcccccCCCCcCCCCCCEEEccCCCCCCCC
Q 037101 335 LSDNYFTHAGPLCRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 335 L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~lp 367 (395)
+++|.++.. ..+.++++|+.|||++|.|.+..
T Consensus 239 lrnN~l~tL-~gie~LksL~~LDlsyNll~~hs 270 (1096)
T KOG1859|consen 239 LRNNALTTL-RGIENLKSLYGLDLSYNLLSEHS 270 (1096)
T ss_pred ecccHHHhh-hhHHhhhhhhccchhHhhhhcch
Confidence 999999865 24678899999999999998843
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.3e-09 Score=95.48 Aligned_cols=223 Identities=12% Similarity=0.079 Sum_probs=130.8
Q ss_pred cEEEEEcCCCCcCCCCcccccCCC-CCCcEEECCCCCCCCC-CccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQL-PDIALFHANSNNFAGT-ISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFL 190 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l-~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 190 (395)
.|..+.+...-+..+.+.+.+.-+ ..|+++||+...++.. ...-++.+.+|+.|.|.++.+.+.+...+..-.+|+.|
T Consensus 160 gV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l 239 (419)
T KOG2120|consen 160 GVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL 239 (419)
T ss_pred CeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence 455555554433333222222222 2477777777666532 22335567777777777777777777777777777777
Q ss_pred EeecCc-CCCCCCchh-cc--CCCCeeeeccccCcccCCcc-ccC--ccccEEEcccCCCC--CCCchHHHhcCCCCcEE
Q 037101 191 DIRFNY-FTGSVPPQI-FT--QNLDFLFINNNGFMIKLPDN-IGS--THILFLTLANNKFI--GPLPRSIFKAFSELTEV 261 (395)
Q Consensus 191 ~Ls~n~-l~~~~p~~~-~~--~~L~~L~L~~n~l~~~~~~~-~~~--~~L~~L~l~~n~l~--~~~p~~~~~~l~~L~~L 261 (395)
+++.+. ++ +....+ +. +.|..|+++.|.+....-.. +.. ..|..|+++++.-. ..--..+.+.+++|.+|
T Consensus 240 nlsm~sG~t-~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 240 NLSMCSGFT-ENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred ccccccccc-hhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 777654 33 222111 11 66777777777765433221 111 57778888776521 11223344458899999
Q ss_pred EccCCc-CcccCchhhcCCCCCcEEEccCCcccccCchh---ccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccC
Q 037101 262 LLVNNQ-LTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFS---LACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSD 337 (395)
Q Consensus 262 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 337 (395)
||+.|. ++......|..++.|++|.++.|.. .+|.. +...+.|.+|++.++--.+..--....+++|+.-.-..
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lkin~q~~ 396 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKINCQHF 396 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccccceee
Confidence 998864 4555556778889999999998873 45554 45678899999877543222111223455655433333
Q ss_pred C
Q 037101 338 N 338 (395)
Q Consensus 338 N 338 (395)
|
T Consensus 397 ~ 397 (419)
T KOG2120|consen 397 N 397 (419)
T ss_pred e
Confidence 3
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=7.6e-09 Score=92.26 Aligned_cols=221 Identities=15% Similarity=0.177 Sum_probs=144.7
Q ss_pred cEEEEEcCCCCcCCCCcccccCCC--CCCcEEECCCCCCCCC-CccccCCC-CCCCEEEccCCCCCC-CcchhhcCCCCC
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQL--PDIALFHANSNNFAGT-ISSNIAKL-PYLYELDISNNKFSG-PFPAAVLGMNNL 187 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l--~~L~~L~l~~n~l~~~-~p~~~~~l-~~L~~L~Ls~n~l~~-~~p~~l~~l~~L 187 (395)
.-+.+|+.+-.+.. +.+..+ .....+.+....+... +.+.+.-+ +.|++|||+...++. .+-.-+.++.+|
T Consensus 137 lW~~lDl~~r~i~p----~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kL 212 (419)
T KOG2120|consen 137 LWQTLDLTGRNIHP----DVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKL 212 (419)
T ss_pred ceeeeccCCCccCh----hHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhh
Confidence 56888998887764 222222 2344455544333322 22223222 469999999998873 233456788999
Q ss_pred cEEEeecCcCCCCCCchhcc-CCCCeeeecccc-CcccCCc-cccC-ccccEEEcccCCCCCCCch-HHHhcCCCCcEEE
Q 037101 188 EFLDIRFNYFTGSVPPQIFT-QNLDFLFINNNG-FMIKLPD-NIGS-THILFLTLANNKFIGPLPR-SIFKAFSELTEVL 262 (395)
Q Consensus 188 ~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~-l~~~~~~-~~~~-~~L~~L~l~~n~l~~~~p~-~~~~~l~~L~~L~ 262 (395)
+.|.+.++++.+.+-..+.. .+|+.|+++.+. ++..--. .+.. +.|..|++++|.+..+.-. .+..--++|+.|+
T Consensus 213 k~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LN 292 (419)
T KOG2120|consen 213 KNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLN 292 (419)
T ss_pred hhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhh
Confidence 99999999998766655554 799999998864 3211111 1122 6899999999987654322 1222235788999
Q ss_pred ccCCcC--c-ccCchhhcCCCCCcEEEccCCc-ccccCchhccCCCCCCeeecccCcCCCCChhh---hcCCCCCcEEEc
Q 037101 263 LVNNQL--T-GCLPYEIGYLKEAVVFDVGDNQ-LTGQLPFSLACLEKVEQLNFANNLLFGMVPEA---VCGLPNLLHFSL 335 (395)
Q Consensus 263 l~~n~l--~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L 335 (395)
++++.= . ..+..-...+++|..|||++|. ++...-..|..++.|++|.++.|. +.+|.. +...|+|.+||+
T Consensus 293 lsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 293 LSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDV 370 (419)
T ss_pred hhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEe
Confidence 988642 1 1222334678999999999874 554445567788999999999987 456664 556789999998
Q ss_pred cCCc
Q 037101 336 SDNY 339 (395)
Q Consensus 336 ~~N~ 339 (395)
.++-
T Consensus 371 ~g~v 374 (419)
T KOG2120|consen 371 FGCV 374 (419)
T ss_pred cccc
Confidence 8753
No 48
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.47 E-value=2.1e-07 Score=59.69 Aligned_cols=39 Identities=28% Similarity=0.658 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHhccCCCCCCCCCCCC---CCCCCcceeeeC
Q 037101 65 AVVYPIIQEFKSIITSDPLGITKTWVG---SDICNYKGFYCE 103 (395)
Q Consensus 65 ~~~~~~l~~~k~~~~~~~~~~~~~W~~---~~~C~w~gv~c~ 103 (395)
..|++||++||..+..++...+.+|.. .++|+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 468999999999998677788999974 599999999995
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.41 E-value=1.4e-08 Score=80.53 Aligned_cols=83 Identities=23% Similarity=0.320 Sum_probs=51.6
Q ss_pred ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeee
Q 037101 231 THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLN 310 (395)
Q Consensus 231 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 310 (395)
..|...++++|.+. .+|..+...++.++.|++++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 34555566666655 566666555556666666666666 55666666666666666666666 5555555566666666
Q ss_pred cccCcC
Q 037101 311 FANNLL 316 (395)
Q Consensus 311 Ls~N~l 316 (395)
..+|.+
T Consensus 130 s~~na~ 135 (177)
T KOG4579|consen 130 SPENAR 135 (177)
T ss_pred CCCCcc
Confidence 666665
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.40 E-value=7e-08 Score=85.16 Aligned_cols=227 Identities=16% Similarity=0.199 Sum_probs=155.2
Q ss_pred cEEEEEcCCCCcCCC---CcccccCCCCCCcEEECCCCCCCCC----Cc-------cccCCCCCCCEEEccCCCCCCCcc
Q 037101 113 AVASIDFNGFQLSAP---TLDGFLDQLPDIALFHANSNNFAGT----IS-------SNIAKLPYLYELDISNNKFSGPFP 178 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~---~~~~~l~~l~~L~~L~l~~n~l~~~----~p-------~~~~~l~~L~~L~Ls~n~l~~~~p 178 (395)
.++.+|||+|.+... .+...+.+-.+|+..+++.- ++|. ++ +++-+|++|+..+||+|.|....|
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 688999999988762 24445667788888888654 2332 22 345688999999999999986666
Q ss_pred h----hhcCCCCCcEEEeecCcCCCCCC-chhc--------------cCCCCeeeeccccCcccCCcccc-----C-ccc
Q 037101 179 A----AVLGMNNLEFLDIRFNYFTGSVP-PQIF--------------TQNLDFLFINNNGFMIKLPDNIG-----S-THI 233 (395)
Q Consensus 179 ~----~l~~l~~L~~L~Ls~n~l~~~~p-~~~~--------------~~~L~~L~L~~n~l~~~~~~~~~-----~-~~L 233 (395)
. .+++-..|++|.+++|.+. .+. ..++ .+.|+.+....|++. ..+.... . ..|
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~l 187 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENL 187 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCc
Confidence 4 4566789999999999875 322 1121 178999999999986 2222211 1 478
Q ss_pred cEEEcccCCCCCC-----CchHHHhcCCCCcEEEccCCcCccc----CchhhcCCCCCcEEEccCCcccccCchhc----
Q 037101 234 LFLTLANNKFIGP-----LPRSIFKAFSELTEVLLVNNQLTGC----LPYEIGYLKEAVVFDVGDNQLTGQLPFSL---- 300 (395)
Q Consensus 234 ~~L~l~~n~l~~~-----~p~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l---- 300 (395)
+.+.+..|.|..+ +...++. +.+|+.||+..|-++-. +...+...+.|+.|.+..|-++.....++
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 9999999987643 1223344 68999999999988732 23344556779999999998874433222
Q ss_pred --cCCCCCCeeecccCcCCCCChhh-------hcCCCCCcEEEccCCccccc
Q 037101 301 --ACLEKVEQLNFANNLLFGMVPEA-------VCGLPNLLHFSLSDNYFTHA 343 (395)
Q Consensus 301 --~~l~~L~~L~Ls~N~l~~~~p~~-------~~~l~~L~~L~L~~N~l~~~ 343 (395)
...++|+.|...+|.+.+.+-.. -..++-|..|.+.+|.|...
T Consensus 267 ~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 267 NEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred hhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 23578899999999775532211 12467777788888888754
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=5.3e-08 Score=86.98 Aligned_cols=191 Identities=17% Similarity=0.180 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCcCC-CCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCC-CcchhhcCCCCCcEE
Q 037101 113 AVASIDFNGFQLSA-PTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSG-PFPAAVLGMNNLEFL 190 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L 190 (395)
+|+.+||.+|.+++ ..+...+.+||.|+.|+++.|.+...+...-..+.+|++|-|.+..+.- ..-..+..++.+++|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 67778888887775 2233445677888888888887765443222345677777777766651 233445667777777
Q ss_pred EeecCcCCCCC--Cchh---ccCCCCeeeeccc---------cCcccCCccccCccccEEEcccCCCCCCCchHHHhcCC
Q 037101 191 DIRFNYFTGSV--PPQI---FTQNLDFLFINNN---------GFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFS 256 (395)
Q Consensus 191 ~Ls~n~l~~~~--p~~~---~~~~L~~L~L~~n---------~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~ 256 (395)
.++.|.+. .+ ...- ..+.+++|++..| ++...+ +++..+.+..|.+...-...-+..++
T Consensus 152 HmS~N~~r-q~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~F------pnv~sv~v~e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 152 HMSDNSLR-QLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIF------PNVNSVFVCEGPLKTESSEKGSEPFP 224 (418)
T ss_pred hhccchhh-hhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhc------ccchheeeecCcccchhhcccCCCCC
Confidence 77777432 11 0000 0123333333333 333222 25555666666554322222222345
Q ss_pred CCcEEEccCCcCcc-cCchhhcCCCCCcEEEccCCcccccCch------hccCCCCCCeee
Q 037101 257 ELTEVLLVNNQLTG-CLPYEIGYLKEAVVFDVGDNQLTGQLPF------SLACLEKVEQLN 310 (395)
Q Consensus 257 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~ 310 (395)
.+--|+|+.|++.. .--+.+.++++|+.|.++++.+...+-. -++++++++.|+
T Consensus 225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 55566666666642 1234556677777777777766532211 135666666665
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.27 E-value=4.9e-08 Score=77.55 Aligned_cols=111 Identities=23% Similarity=0.222 Sum_probs=67.0
Q ss_pred CCCEEEccCCCCCCCcchhh---cCCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEc
Q 037101 162 YLYELDISNNKFSGPFPAAV---LGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTL 238 (395)
Q Consensus 162 ~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l 238 (395)
.+..++|++|.+- .+++.. .....|+..+|++|.+. .+|+.+..+ .+.++.|++
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~k---------------------f~t~t~lNl 84 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIK---------------------FPTATTLNL 84 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhc---------------------cchhhhhhc
Confidence 3455666666654 344433 33344555566666665 555433221 035566666
Q ss_pred ccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchh
Q 037101 239 ANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFS 299 (395)
Q Consensus 239 ~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 299 (395)
++|.++ .+|.++.. ++.|+.|+++.|.+. ..|..+..+.++..|+..+|.+. .+|..
T Consensus 85 ~~neis-dvPeE~Aa-m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 85 ANNEIS-DVPEELAA-MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred chhhhh-hchHHHhh-hHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 666666 77777544 778888888888777 56666666777777777777776 44443
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.24 E-value=5.9e-07 Score=57.72 Aligned_cols=39 Identities=33% Similarity=0.373 Sum_probs=21.1
Q ss_pred CCcEEEccCCcccccCCCCcCCCCCCEEEccCCCCCCCC
Q 037101 329 NLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 329 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~lp 367 (395)
+|++|++++|+|+.+++.+..+++|++|++++|+|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455555666655555444555666666666666555543
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=2.3e-06 Score=54.93 Aligned_cols=40 Identities=33% Similarity=0.513 Sum_probs=27.8
Q ss_pred CCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCC
Q 037101 161 PYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVP 202 (395)
Q Consensus 161 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 202 (395)
++|++|++++|+|+ .+|..+.+|++|++|++++|+++ .++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 46777888888877 56666778888888888888776 443
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.13 E-value=1.2e-05 Score=76.80 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=40.3
Q ss_pred CCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecC-cCCCCCCchhccCCCCe
Q 037101 134 DQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFN-YFTGSVPPQIFTQNLDF 212 (395)
Q Consensus 134 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~~~L~~ 212 (395)
..+.+++.|++++|.++ .+|. + ..+|++|+++++.--..+|..+ ..+|++|++++| .+. .+|. +|+.
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-----sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-----SVRS 116 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-----ccce
Confidence 34567777777777665 3341 1 2357777776633222555444 246777777766 343 4443 3555
Q ss_pred eeecccc
Q 037101 213 LFINNNG 219 (395)
Q Consensus 213 L~L~~n~ 219 (395)
|++..+.
T Consensus 117 L~L~~n~ 123 (426)
T PRK15386 117 LEIKGSA 123 (426)
T ss_pred EEeCCCC
Confidence 5554443
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=9.2e-07 Score=79.20 Aligned_cols=228 Identities=17% Similarity=0.141 Sum_probs=132.7
Q ss_pred CCCCcEEECCCCCCCCCC-cccc-CCCCCCCEEEccCCCCCC--CcchhhcCCCCCcEEEeecCcCCCCCCch-hccCCC
Q 037101 136 LPDIALFHANSNNFAGTI-SSNI-AKLPYLYELDISNNKFSG--PFPAAVLGMNNLEFLDIRFNYFTGSVPPQ-IFTQNL 210 (395)
Q Consensus 136 l~~L~~L~l~~n~l~~~~-p~~~-~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~L 210 (395)
...++.+.+.++.|...- -..| ...+.+++|||.+|.|+. .+...+.+|+.|++|+++.|++...+-.. +...+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 334556666666554221 1112 346789999999999984 35556789999999999999987444322 233788
Q ss_pred CeeeeccccCcccCCccccC--ccccEEEcccCCCCCC-C-chHHHhcCCCCcEEEccCCcCccc--CchhhcCCCCCcE
Q 037101 211 DFLFINNNGFMIKLPDNIGS--THILFLTLANNKFIGP-L-PRSIFKAFSELTEVLLVNNQLTGC--LPYEIGYLKEAVV 284 (395)
Q Consensus 211 ~~L~L~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~-~-p~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~ 284 (395)
+.|-|.+..+...-...+-. +.++.|.++.|.+.-. + ....-..-+.+++|++-.|...-. .-..-.-++++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 88888888776543333322 5666666666633200 0 000001122444444444432200 0001122456666
Q ss_pred EEccCCccccc-CchhccCCCCCCeeecccCcCCCCC-hhhhcCCCCCcEEEccCCcccccCC-------CCcCCCCCCE
Q 037101 285 FDVGDNQLTGQ-LPFSLACLEKVEQLNFANNLLFGMV-PEAVCGLPNLLHFSLSDNYFTHAGP-------LCRFLIEKGV 355 (395)
Q Consensus 285 L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~l~~L~~ 355 (395)
+.+..|.+... .-.....++.+.-|+|+.|+|.+.. -+.+.+++.|..|.+++|.+.+... .++.+++++.
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQV 283 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEE
Confidence 77777765522 1233445667778888888885431 3467788899999999998765432 1467777777
Q ss_pred EEccCCCCCC
Q 037101 356 LDVRNNCIPD 365 (395)
Q Consensus 356 L~L~~N~i~~ 365 (395)
|+=+ +|+.
T Consensus 284 LNGs--kIss 291 (418)
T KOG2982|consen 284 LNGS--KISS 291 (418)
T ss_pred ecCc--ccch
Confidence 6543 5654
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=3e-05 Score=74.06 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=82.5
Q ss_pred cCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEE
Q 037101 157 IAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFL 236 (395)
Q Consensus 157 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L 236 (395)
+..+.++++|++++|.++ .+|. + ..+|++|+++++.-...+|..+ ..+|++|++++|.....+|. +|+.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~-----sLe~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE-----SVRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc-----ccceE
Confidence 455688999999999888 5662 1 2469999998754333666543 46888888888833224443 57777
Q ss_pred EcccCCCC--CCCchHHHhcCCCCcEEEccCCc-Cc-ccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecc
Q 037101 237 TLANNKFI--GPLPRSIFKAFSELTEVLLVNNQ-LT-GCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFA 312 (395)
Q Consensus 237 ~l~~n~l~--~~~p~~~~~~l~~L~~L~l~~n~-l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 312 (395)
++..+... +.+| ++|++|.+.+++ .. ..++. .-.++|++|++++|... .+|..+. .+|+.|.++
T Consensus 118 ~L~~n~~~~L~~LP-------ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 118 EIKGSATDSIKNVP-------NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred EeCCCCCcccccCc-------chHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 77765543 1233 356666664432 11 01111 11256888888877755 4444333 477777777
Q ss_pred cCc
Q 037101 313 NNL 315 (395)
Q Consensus 313 ~N~ 315 (395)
.+.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 653
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.95 E-value=7.4e-06 Score=84.27 Aligned_cols=116 Identities=15% Similarity=0.159 Sum_probs=57.5
Q ss_pred chHHHhcCCCCcEEEccCCcCc-ccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCC-CChhhhc
Q 037101 248 PRSIFKAFSELTEVLLVNNQLT-GCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFG-MVPEAVC 325 (395)
Q Consensus 248 p~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~ 325 (395)
+..++..+|+|+.|.+++-.+. +.......++++|..||+|+.+++. + ..++++++|++|.+.+=.+.. ..-..+.
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 3444444556666655554442 1222333445566666666665552 2 445555666666555544422 1122344
Q ss_pred CCCCCcEEEccCCcccccCC-------CCcCCCCCCEEEccCCCCCC
Q 037101 326 GLPNLLHFSLSDNYFTHAGP-------LCRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 326 ~l~~L~~L~L~~N~l~~~~~-------~~~~l~~L~~L~L~~N~i~~ 365 (395)
.+++|+.||+|......... ....+|+|+.||.+++.+..
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 56666666666554333221 12346666666666665554
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.92 E-value=1.7e-05 Score=67.42 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=56.5
Q ss_pred CCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCC-hhhhcCCCCCcEEE
Q 037101 256 SELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMV-PEAVCGLPNLLHFS 334 (395)
Q Consensus 256 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~ 334 (395)
.....+||++|.+... ..|..++.|.+|.|++|+|+..-|.--.-+++|+.|.|.+|.|.... -+-+..+++|+.|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4555666666665521 22445566666666666666554444444556666666666653321 12244556666666
Q ss_pred ccCCcccccCC----CCcCCCCCCEEEccC
Q 037101 335 LSDNYFTHAGP----LCRFLIEKGVLDVRN 360 (395)
Q Consensus 335 L~~N~l~~~~~----~~~~l~~L~~L~L~~ 360 (395)
+-+|.++...- -+..+|+|+.||..+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 66666655422 145666666666544
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=1.4e-05 Score=82.29 Aligned_cols=134 Identities=19% Similarity=0.221 Sum_probs=93.8
Q ss_pred CCCCeeeeccccC-cccCCccccC--ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcE
Q 037101 208 QNLDFLFINNNGF-MIKLPDNIGS--THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVV 284 (395)
Q Consensus 208 ~~L~~L~L~~n~l-~~~~~~~~~~--~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 284 (395)
.+|++|++++... ....+..++. |+|+.|.+++=.+...--..++.++++|..||+++.+++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5777788777553 2234444555 78899988887665333345667789999999999988843 66788999999
Q ss_pred EEccCCcccc-cCchhccCCCCCCeeecccCcCCCCC--h----hhhcCCCCCcEEEccCCccccc
Q 037101 285 FDVGDNQLTG-QLPFSLACLEKVEQLNFANNLLFGMV--P----EAVCGLPNLLHFSLSDNYFTHA 343 (395)
Q Consensus 285 L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~--p----~~~~~l~~L~~L~L~~N~l~~~ 343 (395)
|.+.+=.+.. ..-..+.++++|+.||+|..+..... . +.-..+|+|+.||.++..+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 9888777663 22234667899999999987654321 1 1223478999999998887764
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.80 E-value=3.4e-05 Score=65.64 Aligned_cols=106 Identities=23% Similarity=0.233 Sum_probs=80.7
Q ss_pred CcEEEccCCcCcccCchhhc-CCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEcc
Q 037101 258 LTEVLLVNNQLTGCLPYEIG-YLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLS 336 (395)
Q Consensus 258 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 336 (395)
=+++++.+.++. .+.. ++ -+.+...+||++|.+.. + ..|..++.|..|.+++|+|+..-|.--.-+++|..|.|.
T Consensus 21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-chhh-ccccccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 445666665554 1111 11 23567889999999873 3 357789999999999999988777665667899999999
Q ss_pred CCcccccCC--CCcCCCCCCEEEccCCCCCCCC
Q 037101 337 DNYFTHAGP--LCRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 337 ~N~l~~~~~--~~~~l~~L~~L~L~~N~i~~lp 367 (395)
+|+|..... .+..+|.|++|.+-+|.++...
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~ 129 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKK 129 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhccc
Confidence 999987644 4889999999999999988744
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.46 E-value=3.2e-05 Score=68.40 Aligned_cols=100 Identities=21% Similarity=0.218 Sum_probs=48.9
Q ss_pred CCCcEEEccCCcCcccCchhhcCCCCCcEEEccCC--cccccCchhccCCCCCCeeecccCcCCCC-ChhhhcCCCCCcE
Q 037101 256 SELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDN--QLTGQLPFSLACLEKVEQLNFANNLLFGM-VPEAVCGLPNLLH 332 (395)
Q Consensus 256 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~ 332 (395)
..|+.|.+.+..++.. ..+-.+++|++|.++.| ++.+.++.....+++|++|++++|++... .-..+..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3444444444444311 11334456666666666 44444444444456666666666665321 0012334455666
Q ss_pred EEccCCcccccCC----CCcCCCCCCEEE
Q 037101 333 FSLSDNYFTHAGP----LCRFLIEKGVLD 357 (395)
Q Consensus 333 L~L~~N~l~~~~~----~~~~l~~L~~L~ 357 (395)
||+.+|..+.... .|..+++|++||
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccc
Confidence 6666666555322 144555555554
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=3.8e-05 Score=68.43 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=65.4
Q ss_pred CCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCC-hhhhcCCCCCcEE
Q 037101 255 FSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMV-PEAVCGLPNLLHF 333 (395)
Q Consensus 255 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L 333 (395)
+.+.+.|+..++.+++. .....++.|+.|.|+-|+|+.. ..+..|++|++|+|..|.|.+.- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44666777777777632 2235677777888888877733 23567778888888888774431 1245677888888
Q ss_pred EccCCcccccCCC------CcCCCCCCEEE
Q 037101 334 SLSDNYFTHAGPL------CRFLIEKGVLD 357 (395)
Q Consensus 334 ~L~~N~l~~~~~~------~~~l~~L~~L~ 357 (395)
.|..|...+..+. ++.||+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888877765431 56677777765
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.87 E-value=0.00073 Score=59.94 Aligned_cols=91 Identities=23% Similarity=0.177 Sum_probs=67.7
Q ss_pred hhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccC--cCCCCChhhhcCCCCCcEEEccCCccccc--CCCCcC
Q 037101 274 YEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANN--LLFGMVPEAVCGLPNLLHFSLSDNYFTHA--GPLCRF 349 (395)
Q Consensus 274 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~ 349 (395)
...-.+..|+.|.+.+..++. + ..+..+++|+.|.++.| .+.+.++-....+++|++++++.|+|..+ ...+..
T Consensus 37 gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred cccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence 333445667777777777762 2 34567889999999999 66555555555679999999999998863 334778
Q ss_pred CCCCCEEEccCCCCCCC
Q 037101 350 LIEKGVLDVRNNCIPDL 366 (395)
Q Consensus 350 l~~L~~L~L~~N~i~~l 366 (395)
+.+|..||+.+|..+.+
T Consensus 115 l~nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNL 131 (260)
T ss_pred hcchhhhhcccCCcccc
Confidence 88999999999987764
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.67 E-value=0.0042 Score=49.82 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=47.7
Q ss_pred HHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCC
Q 037101 250 SIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPN 329 (395)
Q Consensus 250 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 329 (395)
..|..+++|+.+.+.. .+...-...|.++++|+.+.+..+ +.......+..+++|+.+.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3344455666666653 344333445556666666666654 4433344455665666666654 332333345555667
Q ss_pred CcEEEccCCcccccCCC-CcCCCCCCEEEccCCCCCCCC
Q 037101 330 LLHFSLSDNYFTHAGPL-CRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 330 L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~i~~lp 367 (395)
|+.+++..+ +..+... +... +|+.+.+.. .+..++
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~ 118 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIE 118 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS--
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEEC
Confidence 777776554 4444332 4554 666666654 344443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.48 E-value=0.0074 Score=48.34 Aligned_cols=61 Identities=10% Similarity=0.060 Sum_probs=27.4
Q ss_pred ccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeec
Q 037101 132 FLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRF 194 (395)
Q Consensus 132 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 194 (395)
+|.+..+|+.+.+.. .+...-...|..+++|+.+++.++ +...-...|.++++|+.+.+..
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 355555666666653 344333444666666666666554 4433334555665666666643
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.00052 Score=61.37 Aligned_cols=97 Identities=18% Similarity=0.114 Sum_probs=71.1
Q ss_pred cccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCc--hhccCCCCCCee
Q 037101 232 HILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLP--FSLACLEKVEQL 309 (395)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L 309 (395)
+.+.|++.++.+. . -.++..|+.|+.|.|+-|.|+.. ..+..+++|+.|+|..|.|.. +. ..+.++++|+.|
T Consensus 20 ~vkKLNcwg~~L~-D--Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-D--ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCCcc-H--HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhH
Confidence 5667777787766 3 34566688999999999988833 236788889999999998873 32 336788889999
Q ss_pred ecccCcCCCCChh-----hhcCCCCCcEEE
Q 037101 310 NFANNLLFGMVPE-----AVCGLPNLLHFS 334 (395)
Q Consensus 310 ~Ls~N~l~~~~p~-----~~~~l~~L~~L~ 334 (395)
-|..|.-.+..+. .+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999887776443 355678888776
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.10 E-value=0.0002 Score=67.33 Aligned_cols=251 Identities=11% Similarity=0.071 Sum_probs=135.8
Q ss_pred ccEEEEEcCCCCcCCC-CcccccCCCCCCcEEECCCCCC-CCCCcccc-CCCCCCCEEEccCC-CCCCCcch-hhcCCCC
Q 037101 112 IAVASIDFNGFQLSAP-TLDGFLDQLPDIALFHANSNNF-AGTISSNI-AKLPYLYELDISNN-KFSGPFPA-AVLGMNN 186 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~-~~~~~l~~l~~L~~L~l~~n~l-~~~~p~~~-~~l~~L~~L~Ls~n-~l~~~~p~-~l~~l~~ 186 (395)
..++.|.+.|..-.+. .+-.+..+.+++++|.+.++.. +...-.++ ..+++|++|++..+ .++...-. -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4788999988865542 2333456788888888888763 22111122 34678888888773 44433222 2346788
Q ss_pred CcEEEeecCc-CCCCCCchh--ccCCCC--------------------------eeeeccccCcccCCc-ccc--Ccccc
Q 037101 187 LEFLDIRFNY-FTGSVPPQI--FTQNLD--------------------------FLFINNNGFMIKLPD-NIG--STHIL 234 (395)
Q Consensus 187 L~~L~Ls~n~-l~~~~p~~~--~~~~L~--------------------------~L~L~~n~l~~~~~~-~~~--~~~L~ 234 (395)
|++|+++++. +++.--..+ +...++ .+++..|.......- .+. ...|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 8888888874 333100000 012222 333333321101100 001 14667
Q ss_pred EEEcccCCCCCC-CchHHHhcCCCCcEEEccCCc-CcccCchhh-cCCCCCcEEEccCCcccc--cCchhccCCCCCCee
Q 037101 235 FLTLANNKFIGP-LPRSIFKAFSELTEVLLVNNQ-LTGCLPYEI-GYLKEAVVFDVGDNQLTG--QLPFSLACLEKVEQL 309 (395)
Q Consensus 235 ~L~l~~n~l~~~-~p~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L 309 (395)
+|+.+++...+. .-..+.+...+|+.|.+++++ ++..-...+ .+.+.|+.+++..+.... .+...-.+++.|+.|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 777776653322 223344456778888877775 332211222 345677777777765431 122222456788888
Q ss_pred ecccCcCCCCC-----hhhhcCCCCCcEEEccCCccccc--CCCCcCCCCCCEEEccCCC
Q 037101 310 NFANNLLFGMV-----PEAVCGLPNLLHFSLSDNYFTHA--GPLCRFLIEKGVLDVRNNC 362 (395)
Q Consensus 310 ~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~L~~N~ 362 (395)
.++++.+.... ...-..+..|..+.|+++..+.. ...+...++|+.+++-+++
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 88877653221 12224566788888888776543 2235667778887777664
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.97 E-value=8e-05 Score=73.52 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=17.4
Q ss_pred CCEEEccCCCCCCCcc----hhhcCCCCCcEEEeecCcCC
Q 037101 163 LYELDISNNKFSGPFP----AAVLGMNNLEFLDIRFNYFT 198 (395)
Q Consensus 163 L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~ 198 (395)
+..|.|.+|.+..... ..+..+..|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 4455555555543222 22334455555555555554
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.79 E-value=0.0026 Score=63.17 Aligned_cols=110 Identities=22% Similarity=0.143 Sum_probs=59.8
Q ss_pred CCCCCCEEEccCCCCCCC--cchhhcCCCCCcEEEeecC-cCCCCCCch---h--ccCCCCeeeecccc-CcccCCcccc
Q 037101 159 KLPYLYELDISNNKFSGP--FPAAVLGMNNLEFLDIRFN-YFTGSVPPQ---I--FTQNLDFLFINNNG-FMIKLPDNIG 229 (395)
Q Consensus 159 ~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~---~--~~~~L~~L~L~~n~-l~~~~~~~~~ 229 (395)
.++.|+.|.+..+.-... +-......++|+.|+++++ ......+.. . ...+|+.|+++++. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356777777766533322 3344556777777777763 111111111 1 11667777777766 3322222222
Q ss_pred C--ccccEEEcccCC-CCCCCchHHHhcCCCCcEEEccCCcC
Q 037101 230 S--THILFLTLANNK-FIGPLPRSIFKAFSELTEVLLVNNQL 268 (395)
Q Consensus 230 ~--~~L~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~l~~n~l 268 (395)
. ++|++|.+.++. ++...-..+...++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 2 467777766666 45444444555567788888877654
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.43 E-value=0.0081 Score=29.84 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=7.6
Q ss_pred CCCEEEccCCCCCCCC
Q 037101 352 EKGVLDVRNNCIPDLP 367 (395)
Q Consensus 352 ~L~~L~L~~N~i~~lp 367 (395)
+|+.|+|++|+|+.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666554
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.42 E-value=0.0052 Score=32.84 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=9.2
Q ss_pred CCEEEccCCCCCCCcchhhc
Q 037101 163 LYELDISNNKFSGPFPAAVL 182 (395)
Q Consensus 163 L~~L~Ls~n~l~~~~p~~l~ 182 (395)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 4444433
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.02 E-value=0.016 Score=30.93 Aligned_cols=11 Identities=36% Similarity=0.326 Sum_probs=4.4
Q ss_pred cEEEccCCccc
Q 037101 331 LHFSLSDNYFT 341 (395)
Q Consensus 331 ~~L~L~~N~l~ 341 (395)
++||+++|+|+
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444333
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.25 E-value=0.0012 Score=57.71 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=39.1
Q ss_pred CCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcCCCCCCEEEc
Q 037101 279 LKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGVLDV 358 (395)
Q Consensus 279 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L 358 (395)
....+.||++.|++. .+-..+.-+..|..|+++.|++ ...|..+.....+..+++.+|..+..|.++...+.++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 344444455544444 2223333344444555555544 33444455445555555555555554444555555555555
Q ss_pred cCCC
Q 037101 359 RNNC 362 (395)
Q Consensus 359 ~~N~ 362 (395)
.+|.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 5554
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.24 E-value=0.00033 Score=69.26 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=112.1
Q ss_pred EEEEEcCCCCcCCC---CcccccCCCCCCcEEECCCCCCCCCCc----cccCCC-CCCCEEEccCCCCCCC----cchhh
Q 037101 114 VASIDFNGFQLSAP---TLDGFLDQLPDIALFHANSNNFAGTIS----SNIAKL-PYLYELDISNNKFSGP----FPAAV 181 (395)
Q Consensus 114 l~~L~Ls~~~l~~~---~~~~~l~~l~~L~~L~l~~n~l~~~~p----~~~~~l-~~L~~L~Ls~n~l~~~----~p~~l 181 (395)
+..++|.+|.+... .+...+...+.|+.|++++|.+.+.-. ..+... ..|++|++..|.+++. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 67788888887763 234456677888889999998874422 222222 5567788888887743 55666
Q ss_pred cCCCCCcEEEeecCcCCC----CCCchhc-----cCCCCeeeeccccCcccCCcc----ccC-cc-ccEEEcccCCCCCC
Q 037101 182 LGMNNLEFLDIRFNYFTG----SVPPQIF-----TQNLDFLFINNNGFMIKLPDN----IGS-TH-ILFLTLANNKFIGP 246 (395)
Q Consensus 182 ~~l~~L~~L~Ls~n~l~~----~~p~~~~-----~~~L~~L~L~~n~l~~~~~~~----~~~-~~-L~~L~l~~n~l~~~ 246 (395)
.....++.+|++.|.+.. .++..+. ..++++|.+.+|.++...-.. +.. ++ +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 677888888888888741 0111111 257888888888776221111 111 23 66688888887644
Q ss_pred CchHHHhc---C-CCCcEEEccCCcCcccC----chhhcCCCCCcEEEccCCccc
Q 037101 247 LPRSIFKA---F-SELTEVLLVNNQLTGCL----PYEIGYLKEAVVFDVGDNQLT 293 (395)
Q Consensus 247 ~p~~~~~~---l-~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~ 293 (395)
.-..+... + ..+++++++.|.++..- ...+..+..++++.++.|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 22222222 2 45578888888886433 344555677888888888765
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.68 E-value=0.041 Score=27.26 Aligned_cols=13 Identities=46% Similarity=0.531 Sum_probs=4.5
Q ss_pred CCcEEEeecCcCC
Q 037101 186 NLEFLDIRFNYFT 198 (395)
Q Consensus 186 ~L~~L~Ls~n~l~ 198 (395)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 77
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.58 E-value=0.0036 Score=59.12 Aligned_cols=244 Identities=16% Similarity=0.111 Sum_probs=141.9
Q ss_pred cccEEEEEcCCCCc-CCCCcccccCCCCCCcEEECCCC-CCCCCCcc-ccCCCCCCCEEEccCCC-CCCC-cchhhcCCC
Q 037101 111 AIAVASIDFNGFQL-SAPTLDGFLDQLPDIALFHANSN-NFAGTISS-NIAKLPYLYELDISNNK-FSGP-FPAAVLGMN 185 (395)
Q Consensus 111 ~~~l~~L~Ls~~~l-~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~p~-~~~~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~ 185 (395)
.++++.|++.++.. ++......-..+++|+++++..+ .++...-. -...+++|++|+++++. +++. +-..+.+..
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~ 242 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCK 242 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccch
Confidence 45778888877752 22222222345678888888774 33332222 23457888888888764 2221 111122222
Q ss_pred C--------------------------CcEEEeecC-cCCCCCCchhc-----cCCCCeeeeccccCccc-CCccccC--
Q 037101 186 N--------------------------LEFLDIRFN-YFTGSVPPQIF-----TQNLDFLFINNNGFMIK-LPDNIGS-- 230 (395)
Q Consensus 186 ~--------------------------L~~L~Ls~n-~l~~~~p~~~~-----~~~L~~L~L~~n~l~~~-~~~~~~~-- 230 (395)
. +..+++..+ .++. ..++ ...|+.|..+++...+. .-..++.
T Consensus 243 ~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD---~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 243 ELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD---EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred hhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc---hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 2 333443333 2221 1111 16788999888764322 2223333
Q ss_pred ccccEEEcccCC-CCCCCchHHHhcCCCCcEEEccCCcCc--ccCchhhcCCCCCcEEEccCCcccccC-----chhccC
Q 037101 231 THILFLTLANNK-FIGPLPRSIFKAFSELTEVLLVNNQLT--GCLPYEIGYLKEAVVFDVGDNQLTGQL-----PFSLAC 302 (395)
Q Consensus 231 ~~L~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----p~~l~~ 302 (395)
.+|+.|.++.++ ++..--..+..+.+.|+.+++..+... +.+...-.+.+.|+.|.++++...... -..-..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 789999999987 332233445566889999999987653 223333356789999999988643111 222245
Q ss_pred CCCCCeeecccCcCCC-CChhhhcCCCCCcEEEccCCcc-cccCC-C-CcCCCCCCEEE
Q 037101 303 LEKVEQLNFANNLLFG-MVPEAVCGLPNLLHFSLSDNYF-THAGP-L-CRFLIEKGVLD 357 (395)
Q Consensus 303 l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l-~~~~~-~-~~~l~~L~~L~ 357 (395)
+..|+.+.|+++.... ..-+.+..+++|+.+++-++.- +..+. . -.++|++++.-
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 6789999999987643 3345577789999999988753 32221 1 34667665543
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.10 E-value=0.078 Score=29.38 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=13.2
Q ss_pred CCCCcEEEeecCcCCCCCCchhc
Q 037101 184 MNNLEFLDIRFNYFTGSVPPQIF 206 (395)
Q Consensus 184 l~~L~~L~Ls~n~l~~~~p~~~~ 206 (395)
+++|++|+|++|+++ .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 355666666666666 5555443
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.10 E-value=0.078 Score=29.38 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=13.2
Q ss_pred CCCCcEEEeecCcCCCCCCchhc
Q 037101 184 MNNLEFLDIRFNYFTGSVPPQIF 206 (395)
Q Consensus 184 l~~L~~L~Ls~n~l~~~~p~~~~ 206 (395)
+++|++|+|++|+++ .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 355666666666666 5555443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.54 E-value=0.12 Score=28.66 Aligned_cols=19 Identities=37% Similarity=0.427 Sum_probs=16.4
Q ss_pred CCCCCEEEccCCCCCCCCC
Q 037101 350 LIEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 350 l~~L~~L~L~~N~i~~lp~ 368 (395)
+++|+.|+|++|+|+.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4678999999999999984
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.54 E-value=0.12 Score=28.66 Aligned_cols=19 Identities=37% Similarity=0.427 Sum_probs=16.4
Q ss_pred CCCCCEEEccCCCCCCCCC
Q 037101 350 LIEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 350 l~~L~~L~L~~N~i~~lp~ 368 (395)
+++|+.|+|++|+|+.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4678999999999999984
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.13 E-value=0.004 Score=54.48 Aligned_cols=85 Identities=20% Similarity=0.175 Sum_probs=61.7
Q ss_pred CCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEE
Q 037101 255 FSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFS 334 (395)
Q Consensus 255 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 334 (395)
....+.||++.|++. .+-..|+-++.|+.|+++.|.+. ..|..+..+..+..+++..|.. ...|.++...+.++.++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch-hhCCccccccCCcchhh
Confidence 566777777777766 44455666677777888888777 6777777777777777777776 55677778888888888
Q ss_pred ccCCcccc
Q 037101 335 LSDNYFTH 342 (395)
Q Consensus 335 L~~N~l~~ 342 (395)
+..|.+..
T Consensus 118 ~k~~~~~~ 125 (326)
T KOG0473|consen 118 QKKTEFFR 125 (326)
T ss_pred hccCcchH
Confidence 87777653
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.87 E-value=0.13 Score=51.14 Aligned_cols=111 Identities=17% Similarity=0.043 Sum_probs=64.1
Q ss_pred ccccEEEcccCCCCCCCc-hHHHhcCCCCcEEEccCC-cCcccC----chhhcCCCCCcEEEccCCc-ccccCchhcc-C
Q 037101 231 THILFLTLANNKFIGPLP-RSIFKAFSELTEVLLVNN-QLTGCL----PYEIGYLKEAVVFDVGDNQ-LTGQLPFSLA-C 302 (395)
Q Consensus 231 ~~L~~L~l~~n~l~~~~p-~~~~~~l~~L~~L~l~~n-~l~~~~----~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~-~ 302 (395)
+.|+.|.+..+.-..... ..+....+.|++|+++++ ...... ......+.+|+.|+++.+. ++...-..+. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 567777777765332211 233344778888888763 211111 1233455778888888777 5543333333 2
Q ss_pred CCCCCeeecccCc-CCCCCh-hhhcCCCCCcEEEccCCccc
Q 037101 303 LEKVEQLNFANNL-LFGMVP-EAVCGLPNLLHFSLSDNYFT 341 (395)
Q Consensus 303 l~~L~~L~Ls~N~-l~~~~p-~~~~~l~~L~~L~L~~N~l~ 341 (395)
+++|++|.+..+. +++..- .....++.|+.|+++.+...
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 6788888877666 444322 23345677888888876543
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.28 E-value=0.48 Score=26.29 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=15.2
Q ss_pred CCCCEEEccCCCCCCCCC
Q 037101 351 IEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 351 ~~L~~L~L~~N~i~~lp~ 368 (395)
++|+.|++++|+++.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 468889999999999984
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.55 E-value=0.11 Score=44.71 Aligned_cols=33 Identities=6% Similarity=-0.028 Sum_probs=15.2
Q ss_pred CcEEEccCCcCcccCchhhcCCCCCcEEEccCC
Q 037101 258 LTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDN 290 (395)
Q Consensus 258 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 290 (395)
++.++-++..|...--+.+.+++.++.|.+.++
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 444444444444333344444444444444444
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.46 E-value=0.12 Score=27.97 Aligned_cols=14 Identities=50% Similarity=0.778 Sum_probs=5.8
Q ss_pred CCCCEEEccCCCCC
Q 037101 161 PYLYELDISNNKFS 174 (395)
Q Consensus 161 ~~L~~L~Ls~n~l~ 174 (395)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34455555555444
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.27 E-value=0.15 Score=43.86 Aligned_cols=82 Identities=11% Similarity=0.098 Sum_probs=37.6
Q ss_pred ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcc-cCchhhc-CCCCCcEEEccCC-cccccCchhccCCCCCC
Q 037101 231 THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTG-CLPYEIG-YLKEAVVFDVGDN-QLTGQLPFSLACLEKVE 307 (395)
Q Consensus 231 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~-~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~ 307 (395)
..++.++-++..+..+--..+.. ++.++.|.+.++.--+ .--+.++ -.++|+.|++++| +|+..--..+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 35666666666655433333332 5556666655553211 1111111 1245555555544 34433334444455555
Q ss_pred eeeccc
Q 037101 308 QLNFAN 313 (395)
Q Consensus 308 ~L~Ls~ 313 (395)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 554443
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.93 E-value=0.84 Score=25.39 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=13.1
Q ss_pred CCCCCEEEccCCCCCCCC
Q 037101 350 LIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 350 l~~L~~L~L~~N~i~~lp 367 (395)
+.+|+.|+|++|+|+.+.
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 356788888888887653
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.01 E-value=2.8 Score=23.57 Aligned_cols=15 Identities=33% Similarity=0.304 Sum_probs=10.6
Q ss_pred CCCCEEEccCCCCCC
Q 037101 351 IEKGVLDVRNNCIPD 365 (395)
Q Consensus 351 ~~L~~L~L~~N~i~~ 365 (395)
++|++|||++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467777787777754
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.54 E-value=5.1 Score=39.89 Aligned_cols=15 Identities=20% Similarity=0.115 Sum_probs=8.7
Q ss_pred ccccEEEcccCCCCC
Q 037101 231 THILFLTLANNKFIG 245 (395)
Q Consensus 231 ~~L~~L~l~~n~l~~ 245 (395)
..|++|-+.+|.+..
T Consensus 270 l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 270 LPLEELVLEGNPLCT 284 (585)
T ss_pred CCHHHeeecCCcccc
Confidence 455666666666553
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.39 E-value=5.5 Score=39.68 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=15.0
Q ss_pred CCCCcEEECCCCCCCCC--CccccCCCCCCCEEEccCC
Q 037101 136 LPDIALFHANSNNFAGT--ISSNIAKLPYLYELDISNN 171 (395)
Q Consensus 136 l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~Ls~n 171 (395)
.+.+..+.|++|++... +..--...++|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34444455555544322 1111122345555555555
No 92
>PLN00131 hypothetical protein; Provisional
Probab=40.84 E-value=66 Score=26.33 Aligned_cols=17 Identities=12% Similarity=0.008 Sum_probs=8.5
Q ss_pred EEeccCCCCCCCCCCCc
Q 037101 12 FVIGGKRISLTKGCALK 28 (395)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ 28 (395)
|..+.||+|++|+.|++
T Consensus 79 ~PLSiGG~GS~~~~Srr 95 (218)
T PLN00131 79 FPLSIGGGGSDAGPSRR 95 (218)
T ss_pred CceeecCCCCCCCcCcC
Confidence 33444455555655543
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=40.19 E-value=43 Score=33.05 Aligned_cols=105 Identities=19% Similarity=0.202 Sum_probs=50.8
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhh---cCCCCCcEEEeecCcCCCCCCchhcc----CC
Q 037101 137 PDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAV---LGMNNLEFLDIRFNYFTGSVPPQIFT----QN 209 (395)
Q Consensus 137 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p~~~~~----~~ 209 (395)
+.+++++++.|.+....|..+..-. --+.++.+.++...-..+ ..-..+.+++|+.|.....+|..+.. ..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 3456666666666555544432211 114455555442211111 11245777788877777666655433 34
Q ss_pred CCeeeeccccCccc-CCccc--cC-ccccEEEcccCCC
Q 037101 210 LDFLFINNNGFMIK-LPDNI--GS-THILFLTLANNKF 243 (395)
Q Consensus 210 L~~L~L~~n~l~~~-~~~~~--~~-~~L~~L~l~~n~l 243 (395)
+++++.+...+... ....+ +. +.+...+++.|..
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 55666655544311 11111 11 4566666666654
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=34.55 E-value=41 Score=33.17 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=18.6
Q ss_pred CCCcEEEccCCcccccCCC---CcCCCCCCEEEcc
Q 037101 328 PNLLHFSLSDNYFTHAGPL---CRFLIEKGVLDVR 359 (395)
Q Consensus 328 ~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L~L~ 359 (395)
..+++|+.++|.+.+.... ...-+.++.+++.
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~ag 388 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAG 388 (553)
T ss_pred eeeeEeeccccccccccccccceeecccccccccc
Confidence 3588888888887765332 2233444444444
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=33.65 E-value=30 Score=18.77 Aligned_cols=11 Identities=55% Similarity=0.736 Sum_probs=6.1
Q ss_pred CCCCEEEccCC
Q 037101 161 PYLYELDISNN 171 (395)
Q Consensus 161 ~~L~~L~Ls~n 171 (395)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.71 E-value=41 Score=40.47 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=23.2
Q ss_pred ECCCCCCCCCCccccCCCCCCCEEEccCCCCC
Q 037101 143 HANSNNFAGTISSNIAKLPYLYELDISNNKFS 174 (395)
Q Consensus 143 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 174 (395)
+|++|+|+..-+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46777777555566777888888888877665
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.99 E-value=52 Score=39.73 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=27.1
Q ss_pred EccCCcccccCchhccCCCCCCeeecccCcCC
Q 037101 286 DVGDNQLTGQLPFSLACLEKVEQLNFANNLLF 317 (395)
Q Consensus 286 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 317 (395)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 58899999666677888999999999999874
Done!