Query 037101
Match_columns 395
No_of_seqs 475 out of 3768
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 14:31:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 8.4E-43 2.9E-47 327.0 17.2 297 64-368 4-309 (313)
2 4eco_A Uncharacterized protein 100.0 1.3E-38 4.3E-43 326.3 16.8 292 64-368 28-450 (636)
3 3rgz_A Protein brassinosteroid 100.0 7.8E-38 2.7E-42 327.1 16.9 288 64-364 10-356 (768)
4 4ecn_A Leucine-rich repeat pro 100.0 1E-36 3.5E-41 319.0 19.6 287 62-367 265-689 (876)
5 3rgz_A Protein brassinosteroid 100.0 1.4E-35 4.8E-40 310.1 20.9 275 112-388 394-744 (768)
6 4fcg_A Uncharacterized protein 100.0 2.8E-35 9.7E-40 277.6 15.7 283 64-367 25-317 (328)
7 3v47_A TOLL-like receptor 5B a 100.0 9.1E-33 3.1E-37 271.7 23.8 274 112-385 54-409 (455)
8 3v47_A TOLL-like receptor 5B a 100.0 1.1E-32 3.6E-37 271.2 17.1 274 93-367 6-363 (455)
9 1ogq_A PGIP-2, polygalacturona 100.0 1E-32 3.4E-37 258.5 14.9 248 137-387 50-307 (313)
10 2id5_A Lingo-1, leucine rich r 100.0 1.2E-30 4.2E-35 258.2 25.9 292 96-389 12-340 (477)
11 3o6n_A APL1; leucine-rich repe 100.0 3E-31 1E-35 255.9 18.9 251 111-367 44-334 (390)
12 3oja_B Anopheles plasmodium-re 100.0 2.9E-31 1E-35 269.9 19.5 251 112-368 51-341 (597)
13 2id5_A Lingo-1, leucine rich r 100.0 1.1E-30 3.7E-35 258.6 19.9 254 109-365 77-334 (477)
14 1xku_A Decorin; proteoglycan, 100.0 7.8E-30 2.7E-34 240.5 23.2 262 94-365 30-307 (330)
15 1xku_A Decorin; proteoglycan, 100.0 1.3E-29 4.5E-34 238.9 24.6 247 113-369 32-281 (330)
16 4eco_A Uncharacterized protein 100.0 3.6E-31 1.2E-35 271.0 14.7 255 108-367 202-504 (636)
17 3t6q_A CD180 antigen; protein- 100.0 3.3E-30 1.1E-34 262.4 20.5 270 113-385 255-561 (606)
18 2ft3_A Biglycan; proteoglycan, 100.0 6.8E-30 2.3E-34 241.1 20.9 260 95-364 33-307 (332)
19 2z81_A CD282 antigen, TOLL-lik 100.0 8.1E-30 2.8E-34 256.5 20.3 272 94-368 3-427 (549)
20 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-29 3.9E-34 239.6 20.1 246 113-369 34-282 (332)
21 2z80_A TOLL-like receptor 2, v 100.0 5.1E-30 1.7E-34 244.0 17.3 272 91-366 26-316 (353)
22 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-29 6.3E-34 252.4 21.8 152 231-385 324-482 (520)
23 3t6q_A CD180 antigen; protein- 100.0 2.8E-29 9.5E-34 255.6 23.4 252 113-366 226-491 (606)
24 4fcg_A Uncharacterized protein 100.0 1.6E-29 5.5E-34 238.2 20.0 214 135-368 79-295 (328)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.3E-29 2.2E-33 251.0 25.1 131 255-385 352-511 (562)
26 2z66_A Variable lymphocyte rec 100.0 1.7E-29 5.7E-34 235.6 18.8 227 137-365 28-262 (306)
27 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-29 7.3E-34 251.9 20.3 112 255-368 323-438 (520)
28 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-29 1.5E-33 254.3 22.4 275 109-385 77-559 (606)
29 3zyj_A Leucine-rich repeat-con 100.0 7.8E-29 2.7E-33 242.9 22.3 242 116-364 47-292 (440)
30 3zyi_A Leucine-rich repeat-con 100.0 7.2E-29 2.5E-33 244.0 22.1 225 137-364 75-303 (452)
31 4ecn_A Leucine-rich repeat pro 100.0 1.2E-28 4.1E-33 258.0 23.9 247 113-369 549-824 (876)
32 4g8a_A TOLL-like receptor 4; l 100.0 2.3E-28 7.9E-33 249.4 24.5 272 112-385 52-581 (635)
33 3j0a_A TOLL-like receptor 5; m 100.0 3E-28 1E-32 257.2 25.3 260 108-368 69-379 (844)
34 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-28 3.7E-33 260.5 21.7 255 112-368 24-355 (844)
35 3o6n_A APL1; leucine-rich repe 100.0 2.1E-28 7.2E-33 236.0 21.7 244 110-365 91-353 (390)
36 3vq2_A TLR4, TOLL-like recepto 100.0 3.7E-28 1.3E-32 247.3 23.7 115 110-225 54-170 (606)
37 1ziw_A TOLL-like receptor 3; i 100.0 7.8E-28 2.7E-32 248.2 25.6 231 112-343 25-287 (680)
38 2z81_A CD282 antigen, TOLL-lik 100.0 6.4E-29 2.2E-33 250.0 16.0 248 117-368 10-404 (549)
39 1ziw_A TOLL-like receptor 3; i 100.0 4.5E-28 1.5E-32 250.0 22.3 272 112-385 329-623 (680)
40 1wwl_A Monocyte differentiatio 100.0 3.1E-30 1.1E-34 241.4 5.3 244 112-365 43-310 (312)
41 3oja_B Anopheles plasmodium-re 100.0 4.8E-28 1.6E-32 246.2 21.6 242 112-365 99-359 (597)
42 3zyi_A Leucine-rich repeat-con 100.0 1.5E-27 5E-32 234.6 21.9 241 97-342 56-304 (452)
43 2o6q_A Variable lymphocyte rec 100.0 1.7E-27 5.8E-32 218.1 20.1 217 92-342 2-219 (270)
44 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-27 6.3E-32 240.3 21.0 248 112-365 52-442 (562)
45 4fmz_A Internalin; leucine ric 100.0 7.9E-27 2.7E-31 221.2 23.5 242 109-367 85-327 (347)
46 3zyj_A Leucine-rich repeat-con 100.0 3.4E-27 1.2E-31 231.2 21.1 240 97-341 45-292 (440)
47 3o53_A Protein LRIM1, AGAP0063 100.0 2.8E-28 9.7E-33 228.6 12.6 239 113-364 11-250 (317)
48 2z66_A Variable lymphocyte rec 99.9 1E-27 3.4E-32 223.5 14.5 245 95-343 7-263 (306)
49 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-26 3.6E-31 214.4 20.9 223 115-343 14-240 (285)
50 2z63_A TOLL-like receptor 4, v 99.9 9.4E-27 3.2E-31 235.0 22.1 274 109-385 73-532 (570)
51 4fmz_A Internalin; leucine ric 99.9 5.9E-26 2E-30 215.2 25.2 240 109-367 63-303 (347)
52 2z80_A TOLL-like receptor 2, v 99.9 2.5E-27 8.5E-32 225.4 15.5 263 117-385 36-315 (353)
53 3oja_A Leucine-rich immune mol 99.9 2.2E-27 7.6E-32 235.3 15.7 218 135-364 32-250 (487)
54 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-26 4.1E-31 214.1 19.0 222 140-365 14-239 (285)
55 1o6v_A Internalin A; bacterial 99.9 9.1E-26 3.1E-30 222.7 24.4 82 110-198 66-147 (466)
56 1wwl_A Monocyte differentiatio 99.9 8.1E-28 2.8E-32 225.0 8.2 225 113-343 64-311 (312)
57 1o6v_A Internalin A; bacterial 99.9 1.9E-25 6.5E-30 220.4 25.3 236 111-367 89-325 (466)
58 2z63_A TOLL-like receptor 4, v 99.9 1.4E-26 4.8E-31 233.8 16.0 246 111-365 281-532 (570)
59 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-25 4.5E-30 229.0 23.0 112 254-365 467-581 (635)
60 3o53_A Protein LRIM1, AGAP0063 99.9 1E-27 3.5E-32 224.8 5.3 236 112-361 34-272 (317)
61 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-25 6.3E-30 219.7 21.1 184 111-318 63-247 (457)
62 3oja_A Leucine-rich immune mol 99.9 4E-27 1.4E-31 233.4 8.2 234 112-359 34-270 (487)
63 3bz5_A Internalin-J, INLJ; leu 99.9 2.6E-24 8.9E-29 211.5 27.2 228 112-367 42-270 (457)
64 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-25 4E-30 228.0 16.0 216 113-367 62-277 (622)
65 1p9a_G Platelet glycoprotein I 99.9 9.3E-25 3.2E-29 202.0 18.9 202 133-341 6-208 (290)
66 2z62_A TOLL-like receptor 4, v 99.9 1.1E-24 3.7E-29 200.0 17.7 220 117-365 12-238 (276)
67 2z62_A TOLL-like receptor 4, v 99.9 1.9E-24 6.6E-29 198.3 19.1 208 112-344 28-240 (276)
68 4glp_A Monocyte differentiatio 99.9 4.1E-25 1.4E-29 206.4 12.8 224 137-365 64-308 (310)
69 1jl5_A Outer protein YOPM; leu 99.9 3.6E-25 1.2E-29 217.4 12.2 234 110-368 9-274 (454)
70 1jl5_A Outer protein YOPM; leu 99.9 1.9E-23 6.5E-28 205.2 23.5 225 113-367 132-373 (454)
71 3m19_A Variable lymphocyte rec 99.9 3.5E-24 1.2E-28 193.9 16.3 191 93-342 3-193 (251)
72 3goz_A Leucine-rich repeat-con 99.9 1.7E-25 5.8E-30 213.5 7.0 249 117-366 3-299 (362)
73 2ca6_A RAN GTPase-activating p 99.9 1.4E-25 4.7E-30 216.0 4.3 238 130-367 25-319 (386)
74 3g06_A SSPH2 (leucine-rich rep 99.9 5.3E-23 1.8E-27 208.6 23.1 221 110-366 79-299 (622)
75 1p9a_G Platelet glycoprotein I 99.9 1.8E-23 6.3E-28 193.3 17.7 203 157-365 6-209 (290)
76 2ast_B S-phase kinase-associat 99.9 2.2E-25 7.5E-30 210.2 3.8 256 96-367 38-309 (336)
77 1h6u_A Internalin H; cell adhe 99.9 3.3E-23 1.1E-27 193.3 17.2 192 113-345 42-234 (308)
78 3rfs_A Internalin B, repeat mo 99.9 2.7E-23 9.1E-28 190.4 16.3 203 113-351 42-246 (272)
79 3rfs_A Internalin B, repeat mo 99.9 2.1E-23 7.3E-28 191.1 14.8 201 133-367 37-239 (272)
80 2o6q_A Variable lymphocyte rec 99.9 1.3E-22 4.5E-27 185.5 19.6 200 161-365 16-219 (270)
81 4glp_A Monocyte differentiatio 99.9 1.7E-23 6E-28 195.3 13.8 225 113-343 65-309 (310)
82 3goz_A Leucine-rich repeat-con 99.9 2E-24 6.9E-29 206.1 6.8 227 141-367 2-269 (362)
83 1z7x_W Ribonuclease inhibitor; 99.9 9E-26 3.1E-30 222.0 -4.3 181 113-293 86-297 (461)
84 2xwt_C Thyrotropin receptor; s 99.9 9.1E-23 3.1E-27 183.1 14.7 195 137-361 31-236 (239)
85 2ca6_A RAN GTPase-activating p 99.9 2.2E-24 7.4E-29 207.6 4.0 249 112-360 32-339 (386)
86 3m19_A Variable lymphocyte rec 99.9 3.8E-22 1.3E-26 180.5 17.4 177 187-366 16-194 (251)
87 2xwt_C Thyrotropin receptor; s 99.9 1.6E-22 5.6E-27 181.4 14.3 202 111-339 30-237 (239)
88 1h6u_A Internalin H; cell adhe 99.9 1.2E-21 4E-26 182.7 19.1 198 133-368 37-234 (308)
89 1z7x_W Ribonuclease inhibitor; 99.9 2.5E-24 8.5E-29 211.7 0.1 252 112-364 56-354 (461)
90 2ast_B S-phase kinase-associat 99.9 9.3E-23 3.2E-27 192.2 7.1 229 112-346 70-311 (336)
91 3cvr_A Invasion plasmid antige 99.9 6.4E-22 2.2E-26 198.4 11.8 204 88-326 35-252 (571)
92 4ay9_X Follicle-stimulating ho 99.9 3.4E-21 1.2E-25 182.8 14.3 237 95-339 9-257 (350)
93 3cvr_A Invasion plasmid antige 99.8 1.1E-20 3.6E-25 189.6 17.1 204 138-368 60-278 (571)
94 4ay9_X Follicle-stimulating ho 99.8 1.3E-20 4.5E-25 178.8 16.6 237 115-361 12-256 (350)
95 2o6s_A Variable lymphocyte rec 99.8 9.6E-21 3.3E-25 166.2 14.4 164 136-329 27-190 (208)
96 3e6j_A Variable lymphocyte rec 99.8 4.5E-20 1.5E-24 164.5 16.0 166 85-319 9-174 (229)
97 1h6t_A Internalin B; cell adhe 99.8 5.5E-20 1.9E-24 170.0 14.3 189 139-343 26-215 (291)
98 2o6s_A Variable lymphocyte rec 99.8 1.2E-19 3.9E-24 159.3 14.6 177 142-352 12-190 (208)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-19 3.9E-24 160.9 14.0 133 233-365 34-167 (220)
100 1h6t_A Internalin B; cell adhe 99.8 3E-19 1E-23 165.1 15.4 170 112-319 46-215 (291)
101 2v9t_B SLIT homolog 2 protein 99.8 2.8E-19 9.7E-24 158.3 13.8 133 232-365 33-166 (220)
102 4b8c_D Glucose-repressible alc 99.8 1.1E-20 3.8E-25 195.6 5.0 263 62-364 128-404 (727)
103 1dce_A Protein (RAB geranylger 99.8 1.4E-22 4.9E-27 203.8 -9.0 189 158-358 346-567 (567)
104 1m9s_A Internalin B; cell inva 99.8 2E-19 6.9E-24 182.0 12.4 192 138-345 22-214 (605)
105 4ezg_A Putative uncharacterize 99.8 5.1E-19 1.7E-23 153.9 12.9 109 255-365 87-195 (197)
106 2xot_A Amphoterin-induced prot 99.8 2.3E-19 7.9E-24 170.9 10.9 173 164-341 21-202 (361)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 9.1E-19 3.1E-23 155.0 13.9 154 164-343 14-168 (220)
108 1m9s_A Internalin B; cell inva 99.8 1.3E-18 4.4E-23 176.2 16.3 172 136-320 42-213 (605)
109 2xot_A Amphoterin-induced prot 99.8 6.6E-19 2.3E-23 167.8 13.0 175 116-318 22-203 (361)
110 3e6j_A Variable lymphocyte rec 99.8 2.6E-18 9E-23 153.0 15.4 152 187-342 21-173 (229)
111 2v9t_B SLIT homolog 2 protein 99.8 1.8E-18 6.3E-23 153.1 13.9 152 164-342 14-166 (220)
112 3ogk_B Coronatine-insensitive 99.8 3.2E-20 1.1E-24 188.1 2.5 136 231-366 378-528 (592)
113 3ogk_B Coronatine-insensitive 99.8 2.7E-20 9.2E-25 188.6 0.0 252 113-365 165-502 (592)
114 1xeu_A Internalin C; cellular 99.8 8.3E-19 2.8E-23 159.6 8.8 172 136-345 18-189 (263)
115 1dce_A Protein (RAB geranylger 99.8 2.9E-21 9.8E-26 194.4 -9.1 180 182-368 346-550 (567)
116 1xeu_A Internalin C; cellular 99.7 1E-18 3.6E-23 159.0 7.6 166 112-293 19-185 (263)
117 4ezg_A Putative uncharacterize 99.7 1.2E-17 4.1E-22 145.1 11.6 83 255-341 111-194 (197)
118 2ell_A Acidic leucine-rich nuc 99.7 1.4E-17 4.9E-22 140.7 8.9 135 231-368 24-164 (168)
119 1w8a_A SLIT protein; signaling 99.7 5E-17 1.7E-21 140.7 11.5 130 211-342 11-140 (192)
120 1w8a_A SLIT protein; signaling 99.7 8E-17 2.7E-21 139.4 11.8 127 234-364 11-139 (192)
121 2p1m_B Transport inhibitor res 99.7 1.9E-18 6.5E-23 175.0 -0.4 133 231-364 372-519 (594)
122 2wfh_A SLIT homolog 2 protein 99.7 2.1E-16 7.3E-21 136.8 12.2 126 234-364 13-139 (193)
123 4b8c_D Glucose-repressible alc 99.7 2.2E-17 7.5E-22 170.9 6.4 195 113-317 192-404 (727)
124 2o6r_A Variable lymphocyte rec 99.7 7.2E-16 2.5E-20 131.4 13.6 131 232-366 8-139 (177)
125 2je0_A Acidic leucine-rich nuc 99.7 8.2E-17 2.8E-21 133.2 6.8 127 231-360 17-149 (149)
126 2ell_A Acidic leucine-rich nuc 99.7 4.4E-16 1.5E-20 131.5 10.6 136 184-345 23-164 (168)
127 2p1m_B Transport inhibitor res 99.6 1.8E-17 6.2E-22 167.8 1.9 110 255-365 371-495 (594)
128 2wfh_A SLIT homolog 2 protein 99.6 2.1E-15 7.1E-20 130.5 13.3 110 231-342 31-140 (193)
129 3sb4_A Hypothetical leucine ri 99.6 3.7E-15 1.3E-19 139.9 14.6 235 113-357 50-327 (329)
130 2je0_A Acidic leucine-rich nuc 99.6 2.4E-15 8.1E-20 124.3 11.5 58 255-312 87-148 (149)
131 2o6r_A Variable lymphocyte rec 99.6 4.9E-15 1.7E-19 126.2 13.0 113 232-345 29-141 (177)
132 1a9n_A U2A', U2A'; complex (nu 99.6 2.8E-15 9.6E-20 127.7 7.8 130 231-365 19-154 (176)
133 3sb4_A Hypothetical leucine ri 99.6 9.4E-16 3.2E-20 144.0 4.6 212 115-335 75-328 (329)
134 1ds9_A Outer arm dynein; leuci 99.5 9.8E-17 3.4E-21 139.4 -4.3 160 181-365 14-186 (198)
135 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-14 6.7E-19 122.4 9.7 130 157-316 15-152 (176)
136 3g39_A Variable lymphocyte rec 99.5 6.4E-14 2.2E-18 118.6 11.2 108 232-343 10-117 (170)
137 1ds9_A Outer arm dynein; leuci 99.5 4.1E-16 1.4E-20 135.5 -2.5 113 180-297 43-157 (198)
138 2r9u_A Variable lymphocyte rec 99.5 7.6E-14 2.6E-18 118.6 11.5 106 234-343 15-120 (174)
139 3g39_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 117.1 10.4 107 257-366 10-117 (170)
140 4fdw_A Leucine rich hypothetic 99.5 9.1E-13 3.1E-17 126.8 17.9 225 130-367 129-361 (401)
141 4fdw_A Leucine rich hypothetic 99.5 9.2E-13 3.1E-17 126.8 17.7 240 113-365 136-384 (401)
142 2r9u_A Variable lymphocyte rec 99.5 2.1E-13 7.2E-18 115.8 10.0 107 258-367 14-121 (174)
143 3un9_A NLR family member X1; l 99.4 4E-14 1.4E-18 135.0 -0.2 160 184-343 71-254 (372)
144 3un9_A NLR family member X1; l 99.4 3.6E-14 1.2E-18 135.3 -1.5 110 231-341 155-283 (372)
145 2ifg_A High affinity nerve gro 99.3 5E-12 1.7E-16 119.3 11.0 102 236-341 13-116 (347)
146 2ifg_A High affinity nerve gro 99.2 1.8E-11 6.3E-16 115.3 9.9 103 212-318 12-117 (347)
147 2ra8_A Uncharacterized protein 99.0 1.6E-10 5.6E-15 109.3 3.7 130 231-362 193-341 (362)
148 2ra8_A Uncharacterized protein 98.9 2.2E-09 7.7E-14 101.5 7.8 199 137-339 107-341 (362)
149 4fs7_A Uncharacterized protein 98.7 2.5E-07 8.7E-12 88.5 16.6 84 275-361 292-376 (394)
150 4fs7_A Uncharacterized protein 98.7 1.7E-07 5.7E-12 89.8 14.6 200 155-367 156-358 (394)
151 4gt6_A Cell surface protein; l 98.7 3.3E-07 1.1E-11 87.7 14.9 109 250-362 259-368 (394)
152 1io0_A Tropomodulin; LRR prote 98.6 9.8E-09 3.4E-13 87.7 2.4 110 255-364 35-164 (185)
153 4gt6_A Cell surface protein; l 98.6 7.8E-07 2.7E-11 85.1 14.1 126 231-363 265-390 (394)
154 1io0_A Tropomodulin; LRR prote 98.5 4.5E-08 1.6E-12 83.5 3.3 112 231-342 36-165 (185)
155 3rw6_A Nuclear RNA export fact 98.4 2.1E-08 7.3E-13 90.3 -0.4 63 255-319 169-235 (267)
156 3rw6_A Nuclear RNA export fact 98.3 5E-07 1.7E-11 81.3 6.2 63 278-342 168-234 (267)
157 4h09_A Hypothetical leucine ri 98.2 3.5E-05 1.2E-09 73.0 16.9 109 250-361 234-343 (379)
158 4h09_A Hypothetical leucine ri 98.1 6.9E-05 2.4E-09 70.9 15.9 242 113-367 47-325 (379)
159 3e4g_A ATP synthase subunit S, 98.1 1.4E-06 4.8E-11 72.9 3.2 82 257-338 62-149 (176)
160 3e4g_A ATP synthase subunit S, 98.1 1.4E-06 4.9E-11 72.9 2.9 86 280-365 61-154 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 4.6E-05 1.6E-09 64.9 3.5 107 256-362 41-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 6.7E-05 2.3E-09 63.9 3.6 109 231-340 41-169 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0028 9.4E-08 50.2 6.6 38 161-198 31-68 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.0027 9.1E-08 50.2 6.0 36 281-316 32-67 (130)
165 1cn3_F Fragment of coat protei 50.6 6.8 0.00023 20.4 1.2 8 16-23 2-9 (29)
166 2lz0_A Uncharacterized protein 38.1 51 0.0017 23.9 4.9 40 154-194 13-52 (100)
167 2lz0_A Uncharacterized protein 25.0 1.6E+02 0.0054 21.1 5.7 12 324-335 39-50 (100)
168 3c66_C PRE-mRNA polyadenylatio 20.8 36 0.0012 17.9 0.9 10 10-19 2-11 (26)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.4e-43 Score=327.03 Aligned_cols=297 Identities=25% Similarity=0.398 Sum_probs=266.8
Q ss_pred hhhHHHHHHHHHHhccCCCCCCCCCCC-CCCCCC--cceeeeCCCCCCCccccEEEEEcCCCCcCCC-CcccccCCCCCC
Q 037101 64 LAVVYPIIQEFKSIITSDPLGITKTWV-GSDICN--YKGFYCESPPDNETAIAVASIDFNGFQLSAP-TLDGFLDQLPDI 139 (395)
Q Consensus 64 ~~~~~~~l~~~k~~~~~~~~~~~~~W~-~~~~C~--w~gv~c~~~~~~~~~~~l~~L~Ls~~~l~~~-~~~~~l~~l~~L 139 (395)
.+.|++||++||..+. +|. .+.+|. +.++|. |.||.|+... ...+|+.|+++++.+.+. .++..+..+++|
T Consensus 4 ~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~---~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 4 NPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDT---QTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSS---SCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCC---CCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 4568899999999995 665 678997 468998 9999997532 124899999999999871 256779999999
Q ss_pred cEEECCC-CCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhcc-CCCCeeeecc
Q 037101 140 ALFHANS-NNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT-QNLDFLFINN 217 (395)
Q Consensus 140 ~~L~l~~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~ 217 (395)
++|++++ |.+.+.+|..++++++|++|++++|.+++.+|..|.++++|++|++++|.+++.+|..+.. ++|++|++++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 9999995 9999999999999999999999999999999999999999999999999999889987766 8999999999
Q ss_pred ccCcccCCccccC-c-cccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCccccc
Q 037101 218 NGFMIKLPDNIGS-T-HILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQ 295 (395)
Q Consensus 218 n~l~~~~~~~~~~-~-~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 295 (395)
|.+.+.+|..++. . +|++|++++|.+.+.+|..+.. ++ |++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 159 N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 9999999998887 5 8999999999999888888765 55 99999999999999999999999999999999999976
Q ss_pred CchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcCCCCCCEEEccCCC-CCCCCC
Q 037101 296 LPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNC-IPDLPF 368 (395)
Q Consensus 296 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~-i~~lp~ 368 (395)
.|. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|....+++|+.+++++|+ +.+.|.
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTS
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCC
Confidence 665 888999999999999999899999999999999999999999988888899999999999998 777664
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-38 Score=326.28 Aligned_cols=292 Identities=18% Similarity=0.265 Sum_probs=242.4
Q ss_pred hhhHHHHHHHHHHhccCCCCCCCC-------CCC-CCCCCCc---ceeeeCCCCCCCccccEEEEEcCCCCcCCCCcccc
Q 037101 64 LAVVYPIIQEFKSIITSDPLGITK-------TWV-GSDICNY---KGFYCESPPDNETAIAVASIDFNGFQLSAPTLDGF 132 (395)
Q Consensus 64 ~~~~~~~l~~~k~~~~~~~~~~~~-------~W~-~~~~C~w---~gv~c~~~~~~~~~~~l~~L~Ls~~~l~~~~~~~~ 132 (395)
...|+.||.+++.++..+.+.... +|. +.++|.| .||.|+.. .+|+.|+|+++++.| .++..
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~------~~V~~L~L~~~~l~g-~lp~~ 100 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN------GRVTGLSLEGFGASG-RVPDA 100 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT------CCEEEEECTTSCCEE-EECGG
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC------CCEEEEEecCcccCC-cCChH
Confidence 457999999999999766554333 797 5789999 99999753 389999999999998 46778
Q ss_pred cCCCCCCcEEECCCCCC---------------------------------------------------------------
Q 037101 133 LDQLPDIALFHANSNNF--------------------------------------------------------------- 149 (395)
Q Consensus 133 l~~l~~L~~L~l~~n~l--------------------------------------------------------------- 149 (395)
++++++|++|++++|.+
T Consensus 101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 180 (636)
T 4eco_A 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180 (636)
T ss_dssp GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence 99999999999998843
Q ss_pred ---------------CCCCccccCCCCCCCEEEccCCCCCCC-----------------cchhhc--CCCCCcEEEeecC
Q 037101 150 ---------------AGTISSNIAKLPYLYELDISNNKFSGP-----------------FPAAVL--GMNNLEFLDIRFN 195 (395)
Q Consensus 150 ---------------~~~~p~~~~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~n 195 (395)
++ +|..++++++|++|+|++|.+++. +|..++ ++++|++|++++|
T Consensus 181 ~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n 259 (636)
T 4eco_A 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259 (636)
T ss_dssp CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC
T ss_pred cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC
Confidence 34 788899999999999999999985 899988 9999999999999
Q ss_pred cCCCCCCchhcc-CCCCeeeecccc-Ccc-cCCccccC-------ccccEEEcccCCCCCCCch--HHHhcCCCCcEEEc
Q 037101 196 YFTGSVPPQIFT-QNLDFLFINNNG-FMI-KLPDNIGS-------THILFLTLANNKFIGPLPR--SIFKAFSELTEVLL 263 (395)
Q Consensus 196 ~l~~~~p~~~~~-~~L~~L~L~~n~-l~~-~~~~~~~~-------~~L~~L~l~~n~l~~~~p~--~~~~~l~~L~~L~l 263 (395)
.+.+.+|..+.. ++|++|++++|+ +++ .+|..++. ++|++|++++|.+. .+|. .+.. +++|++|++
T Consensus 260 ~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~-l~~L~~L~L 337 (636)
T 4eco_A 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK-MKKLGMLEC 337 (636)
T ss_dssp TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT-CTTCCEEEC
T ss_pred cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc-CCCCCEEeC
Confidence 999999987776 899999999998 888 78877765 78999999999999 8887 5544 899999999
Q ss_pred cCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCC-CCeeecccCcCCCCChhhhcCCC--CCcEEEccCCcc
Q 037101 264 VNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEK-VEQLNFANNLLFGMVPEAVCGLP--NLLHFSLSDNYF 340 (395)
Q Consensus 264 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~l 340 (395)
++|+++|.+| .++.+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..+. +|+.|++++|.+
T Consensus 338 ~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 338 LYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred cCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence 9999998888 7888888888888888888 77878888888 888888888886 6677666544 788888888888
Q ss_pred cccCCC-Cc-------CCCCCCEEEccCCCCCCCCC
Q 037101 341 THAGPL-CR-------FLIEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 341 ~~~~~~-~~-------~l~~L~~L~L~~N~i~~lp~ 368 (395)
++..|. +. .+++|++|+|++|+|+.+|.
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 450 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccCcCCH
Confidence 775543 44 56677777777777777663
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.8e-38 Score=327.13 Aligned_cols=288 Identities=24% Similarity=0.361 Sum_probs=170.4
Q ss_pred hhhHHHHHHHHHHhccCCCCCCCCCCC-CCCCCCcceeeeCCCCCCCccccEEEEEcCCCCcCCCC--cc----------
Q 037101 64 LAVVYPIIQEFKSIITSDPLGITKTWV-GSDICNYKGFYCESPPDNETAIAVASIDFNGFQLSAPT--LD---------- 130 (395)
Q Consensus 64 ~~~~~~~l~~~k~~~~~~~~~~~~~W~-~~~~C~w~gv~c~~~~~~~~~~~l~~L~Ls~~~l~~~~--~~---------- 130 (395)
.+.|++||++||+.+. ||. .+.+|. +.|||.|.||.|+. .+|+.|+|+++.+.+.. ++
T Consensus 10 ~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~~-------~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 10 LYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCRD-------DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp HHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEET-------TEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred CHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEECC-------CcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 5678999999999997 777 889996 67899999999972 38999999988877630 12
Q ss_pred -------------cccCCCCCCcEEECCCCCCCCCCcc--ccCCCCCCCEEEccCCCCCCCcchhh-cCCCCCcEEEeec
Q 037101 131 -------------GFLDQLPDIALFHANSNNFAGTISS--NIAKLPYLYELDISNNKFSGPFPAAV-LGMNNLEFLDIRF 194 (395)
Q Consensus 131 -------------~~l~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~ 194 (395)
..+..+++|++|++++|.+.+.+|. .++++++|++|++++|.+.+.+|..+ .++++|++|++++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 3466667777777777777766666 67777777777777777666665544 5666666666666
Q ss_pred CcCCCCCCch---hcc-CCC----------------------CeeeeccccCcccCCccccC-ccccEEEcccCCCCCCC
Q 037101 195 NYFTGSVPPQ---IFT-QNL----------------------DFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPL 247 (395)
Q Consensus 195 n~l~~~~p~~---~~~-~~L----------------------~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~ 247 (395)
|.+++..|.. +.. ++| ++|++++|.+.+.+|. ++. ++|++|++++|.+.+.+
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc
Confidence 6665444433 111 334 4444444444433333 222 44444444444444333
Q ss_pred chHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCC-CCCCeeecccCcCCCCChhhhcC
Q 037101 248 PRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACL-EKVEQLNFANNLLFGMVPEAVCG 326 (395)
Q Consensus 248 p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~ 326 (395)
|..+.. +++|++|++++|.+.+.+|.. .+++|++|++++|++++.+|..+... ++|++|++++|.+++.+|..|..
T Consensus 240 ~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 240 SRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp HHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred cHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence 333322 444444444444444433332 44445555555555544555554443 55555555555555555555555
Q ss_pred CCCCcEEEccCCcccccCC-C-CcCCCCCCEEEccCCCCC
Q 037101 327 LPNLLHFSLSDNYFTHAGP-L-CRFLIEKGVLDVRNNCIP 364 (395)
Q Consensus 327 l~~L~~L~L~~N~l~~~~~-~-~~~l~~L~~L~L~~N~i~ 364 (395)
+++|++|++++|.+++..+ . +..+++|++|++++|.++
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence 5566666666665554433 2 555556666666666555
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-36 Score=318.99 Aligned_cols=287 Identities=17% Similarity=0.234 Sum_probs=239.5
Q ss_pred hhhhhHHHHHHHHHHhccCCCCCCCCCCCC------CCC--CCc------------ceeeeCCCCCCCccccEEEEEcCC
Q 037101 62 QRLAVVYPIIQEFKSIITSDPLGITKTWVG------SDI--CNY------------KGFYCESPPDNETAIAVASIDFNG 121 (395)
Q Consensus 62 ~~~~~~~~~l~~~k~~~~~~~~~~~~~W~~------~~~--C~w------------~gv~c~~~~~~~~~~~l~~L~Ls~ 121 (395)
.....|+.||++||+++. +| +|.. .+| |.| .||.|+.. .+|+.|+|++
T Consensus 265 ~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~------~~V~~L~Ls~ 332 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN------GRVTGLSLAG 332 (876)
T ss_dssp CHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT------SCEEEEECTT
T ss_pred ccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC------CCEEEEECcc
Confidence 345689999999999996 44 5642 356 999 99999852 3999999999
Q ss_pred CCcCCCCcccccCCCCCCcEEEC-CCCCCCCC------------------------------------------------
Q 037101 122 FQLSAPTLDGFLDQLPDIALFHA-NSNNFAGT------------------------------------------------ 152 (395)
Q Consensus 122 ~~l~~~~~~~~l~~l~~L~~L~l-~~n~l~~~------------------------------------------------ 152 (395)
+++.| .++..+++|++|++|+| ++|.+.|.
T Consensus 333 ~~L~G-~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 333 FGAKG-RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp TCCEE-EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred CCCCC-cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 99998 46788999999999999 77754333
Q ss_pred ----------------------------CccccCCCCCCCEEEccCCCCCC-----------------Ccchhhc--CCC
Q 037101 153 ----------------------------ISSNIAKLPYLYELDISNNKFSG-----------------PFPAAVL--GMN 185 (395)
Q Consensus 153 ----------------------------~p~~~~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~ 185 (395)
+|..++++++|++|+|++|.+++ .+|..++ +++
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred ccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence 77889999999999999999997 3888877 999
Q ss_pred CCcEEEeecCcCCCCCCchhcc-CCCCeeeecccc-Ccc-cCCccccC-c-------cccEEEcccCCCCCCCch--HHH
Q 037101 186 NLEFLDIRFNYFTGSVPPQIFT-QNLDFLFINNNG-FMI-KLPDNIGS-T-------HILFLTLANNKFIGPLPR--SIF 252 (395)
Q Consensus 186 ~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~-l~~-~~~~~~~~-~-------~L~~L~l~~n~l~~~~p~--~~~ 252 (395)
+|++|+|++|.+.+.+|..+.. ++|++|++++|+ +++ .+|..++. . +|++|++++|.+. .+|. .+.
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 9999999999999999987776 899999999998 887 78876654 3 8999999999999 8888 555
Q ss_pred hcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCC-CCeeecccCcCCCCChhhhcCCCC--
Q 037101 253 KAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEK-VEQLNFANNLLFGMVPEAVCGLPN-- 329 (395)
Q Consensus 253 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~-- 329 (395)
.+++|++|++++|+++ .+| .++.+++|+.|+|++|+++ .+|..+..+++ |++|++++|.+. .+|..+..+..
T Consensus 571 -~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 571 -KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV 645 (876)
T ss_dssp -TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred -cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCC
Confidence 4899999999999999 788 8899999999999999999 88888999998 999999999986 67877766644
Q ss_pred CcEEEccCCcccccCCCCc------CCCCCCEEEccCCCCCCCC
Q 037101 330 LLHFSLSDNYFTHAGPLCR------FLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 330 L~~L~L~~N~l~~~~~~~~------~l~~L~~L~L~~N~i~~lp 367 (395)
|+.|++++|.+++.++.+. .+++|+.|+|++|.|+.+|
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp 689 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC
Confidence 8888888888877655332 3346777777777777666
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-35 Score=310.12 Aligned_cols=275 Identities=24% Similarity=0.376 Sum_probs=236.2
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLD 191 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 191 (395)
..++.|++++|.+.+ .++..+..+++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 394 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 394 NTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp CCCCEEECCSSEEEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCccEEECCCCcccc-ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 467888888888876 3566788889999999999999888888888899999999999999988898899999999999
Q ss_pred eecCcCCCCCCchhcc-CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCc
Q 037101 192 IRFNYFTGSVPPQIFT-QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLT 269 (395)
Q Consensus 192 Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~ 269 (395)
+++|++++.+|..+.. ++|++|++++|++.+.+|..++. ++|++|++++|++.+.+|..+.. +++|++|++++|.++
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG-CTTCCEEECCSSEEE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCCCEEECCCCccC
Confidence 9999998888877765 88999999999999888888877 88999999999998888887765 889999999999888
Q ss_pred ccCchhh----------------------------------------------------------------------cCC
Q 037101 270 GCLPYEI----------------------------------------------------------------------GYL 279 (395)
Q Consensus 270 ~~~~~~~----------------------------------------------------------------------~~l 279 (395)
|.+|..+ +.+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 7776543 335
Q ss_pred CCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-CcCCCCCCEEEc
Q 037101 280 KEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFLIEKGVLDV 358 (395)
Q Consensus 280 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L 358 (395)
++|++|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|++++.+|. +..+++|++|+|
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 6799999999999999999999999999999999999999999999999999999999999988775 899999999999
Q ss_pred cCCCCCC-CCCC--CCchhhhcccCCCCCCCCC
Q 037101 359 RNNCIPD-LPFQ--RSVAECADFFAHPRFCPHM 388 (395)
Q Consensus 359 ~~N~i~~-lp~~--~~~~~~~~~~~~~~~c~~~ 388 (395)
++|++++ +|.. ........|.+||.+|-..
T Consensus 712 s~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred cCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence 9999998 5632 2333455688888887543
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.8e-35 Score=277.56 Aligned_cols=283 Identities=16% Similarity=0.182 Sum_probs=204.9
Q ss_pred hhhHHHHHHHHHHhccCCCCCCCCCCC-----CCCCCCcceeeeCCCCCC---CccccEEEEEcCCCCcCCCCcccccCC
Q 037101 64 LAVVYPIIQEFKSIITSDPLGITKTWV-----GSDICNYKGFYCESPPDN---ETAIAVASIDFNGFQLSAPTLDGFLDQ 135 (395)
Q Consensus 64 ~~~~~~~l~~~k~~~~~~~~~~~~~W~-----~~~~C~w~gv~c~~~~~~---~~~~~l~~L~Ls~~~l~~~~~~~~l~~ 135 (395)
...+++||++||..+..++.++...|. ..++|.|.|+.|...+.. ....+|+.|++++|.+.. ++..+..
T Consensus 25 ~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~--lp~~l~~ 102 (328)
T 4fcg_A 25 LRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ--FPDQAFR 102 (328)
T ss_dssp CCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSS--CCSCGGG
T ss_pred CchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchh--cChhhhh
Confidence 457789999999999778877788893 457899999999531100 012478899999998885 5666777
Q ss_pred CCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeee
Q 037101 136 LPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFI 215 (395)
Q Consensus 136 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L 215 (395)
+++|++|++++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++|++++|++.+.+|..+...
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~------- 173 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST------- 173 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE-------
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc-------
Confidence 889999999998888 78888888899999999999888 778888889999999999888877888755320
Q ss_pred ccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccc
Q 037101 216 NNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTG 294 (395)
Q Consensus 216 ~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 294 (395)
.++..+.. ++|++|++++|.+. .+|..+.. +++|++|++++|.++ .+|..++.+++|++|++++|.+.+
T Consensus 174 -------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~ 243 (328)
T 4fcg_A 174 -------DASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243 (328)
T ss_dssp -------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCC
T ss_pred -------cchhhhccCCCCCEEECcCCCcC-cchHhhcC-CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchh
Confidence 00111122 46666666666666 66665443 677777777777777 355567777777777777777777
Q ss_pred cCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC-CCcCCCCCCEEEccCCCCCCCC
Q 037101 295 QLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP-LCRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 295 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~i~~lp 367 (395)
.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|+|++|++.+..| .+..+++|+.+++..|.+..++
T Consensus 244 ~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 777777777777777777777777777777777777777777777666544 3677777777777777666554
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.1e-33 Score=271.68 Aligned_cols=274 Identities=16% Similarity=0.172 Sum_probs=193.2
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchh--hcCCCCCcE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAA--VLGMNNLEF 189 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~ 189 (395)
.+++.|++++|.+.+.+.+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+.. +..+++|++
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 133 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence 356666666666654333455666666666666666666656666666666666666666666544443 666666666
Q ss_pred EEeecCcCCCCCCchhc--cCCCCeeeeccccCcccCCccccC-----------------------------------cc
Q 037101 190 LDIRFNYFTGSVPPQIF--TQNLDFLFINNNGFMIKLPDNIGS-----------------------------------TH 232 (395)
Q Consensus 190 L~Ls~n~l~~~~p~~~~--~~~L~~L~L~~n~l~~~~~~~~~~-----------------------------------~~ 232 (395)
|++++|++++..|..++ .++|++|++++|.+.+..+..+.. ++
T Consensus 134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 213 (455)
T 3v47_A 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213 (455)
T ss_dssp EECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCE
T ss_pred EECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccce
Confidence 66666666644454422 266666666666666554443321 46
Q ss_pred ccEEEcccCCCCCCCchHHHhc--------------------------------------CCCCcEEEccCCcCcccCch
Q 037101 233 ILFLTLANNKFIGPLPRSIFKA--------------------------------------FSELTEVLLVNNQLTGCLPY 274 (395)
Q Consensus 233 L~~L~l~~n~l~~~~p~~~~~~--------------------------------------l~~L~~L~l~~n~l~~~~~~ 274 (395)
|++|++++|.+.+..|..+... .++|++|++++|.+.+..+.
T Consensus 214 L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 293 (455)
T 3v47_A 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293 (455)
T ss_dssp EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh
Confidence 8888888888776666555432 14788888888888888888
Q ss_pred hhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC-CCcCCCCC
Q 037101 275 EIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP-LCRFLIEK 353 (395)
Q Consensus 275 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L 353 (395)
.++.+++|++|++++|++++..|..+..+++|++|++++|++.+..+..|..+++|++|++++|.+++.++ .+..+++|
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence 88889999999999999988778888889999999999999988778888889999999999999988855 48888999
Q ss_pred CEEEccCCCCCCCCCCC----CchhhhcccCCCCCC
Q 037101 354 GVLDVRNNCIPDLPFQR----SVAECADFFAHPRFC 385 (395)
Q Consensus 354 ~~L~L~~N~i~~lp~~~----~~~~~~~~~~~~~~c 385 (395)
++|+|++|+|+++|... ......++.+|+..|
T Consensus 374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 99999999999887532 223344566666433
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-32 Score=271.20 Aligned_cols=274 Identities=20% Similarity=0.244 Sum_probs=227.0
Q ss_pred CCCCcce--eeeCCCCCC---CccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCC-ccccCCCCCCCEE
Q 037101 93 DICNYKG--FYCESPPDN---ETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTI-SSNIAKLPYLYEL 166 (395)
Q Consensus 93 ~~C~w~g--v~c~~~~~~---~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L 166 (395)
..|.|.+ +.|....-. ....+++.|++++|.+.+ ..+..|.++++|++|++++|.+.+.+ +..|.++++|++|
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L 84 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCc-CChhHhccCccccEEECcCCcccceECcccccccccCCEE
Confidence 3455444 777642110 133689999999999987 45777999999999999999998665 5679999999999
Q ss_pred EccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCch--hcc-CCCCeeeeccccCcccCCcc-ccC-ccccEEEcccC
Q 037101 167 DISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQ--IFT-QNLDFLFINNNGFMIKLPDN-IGS-THILFLTLANN 241 (395)
Q Consensus 167 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~-~~L~~L~L~~n~l~~~~~~~-~~~-~~L~~L~l~~n 241 (395)
+|++|.+++..|..|.++++|++|++++|.+++.++.. +.. ++|++|++++|.+.+..|.. +.. ++|++|++++|
T Consensus 85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 99999999888999999999999999999998655543 332 89999999999999887776 444 89999999999
Q ss_pred CCCCCCchHHHh---------------------------------cCCCCcEEEccCCcCcccCchhhcC----------
Q 037101 242 KFIGPLPRSIFK---------------------------------AFSELTEVLLVNNQLTGCLPYEIGY---------- 278 (395)
Q Consensus 242 ~l~~~~p~~~~~---------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~---------- 278 (395)
.+.+..+..+.. .+++|++|++++|++++..+..+..
T Consensus 165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred cccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence 998665554332 1367999999999887655544422
Q ss_pred -----------------------------CCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCC
Q 037101 279 -----------------------------LKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPN 329 (395)
Q Consensus 279 -----------------------------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 329 (395)
.++|++|++++|.+++..|..+..+++|++|++++|++.+..|..|..+++
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 324 (455)
T 3v47_A 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324 (455)
T ss_dssp ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred eeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCccc
Confidence 258999999999999888999999999999999999999988989999999
Q ss_pred CcEEEccCCcccccCCC-CcCCCCCCEEEccCCCCCCCC
Q 037101 330 LLHFSLSDNYFTHAGPL-CRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 330 L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~i~~lp 367 (395)
|+.|++++|.++++++. +..+++|++|+|++|+|++++
T Consensus 325 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 363 (455)
T 3v47_A 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363 (455)
T ss_dssp CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC
Confidence 99999999999988664 789999999999999999864
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1e-32 Score=258.49 Aligned_cols=248 Identities=24% Similarity=0.324 Sum_probs=223.4
Q ss_pred CCCcEEECCCCCCCC--CCccccCCCCCCCEEEccC-CCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhcc-CCCCe
Q 037101 137 PDIALFHANSNNFAG--TISSNIAKLPYLYELDISN-NKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT-QNLDF 212 (395)
Q Consensus 137 ~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~ 212 (395)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+.. ++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999999 8999999999999999995 9999999999999999999999999999889987766 89999
Q ss_pred eeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCC-CCcEEEccCCcCcccCchhhcCCCCCcEEEccCC
Q 037101 213 LFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFS-ELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDN 290 (395)
Q Consensus 213 L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 290 (395)
|++++|.+.+.+|..+.. ++|++|++++|.+.+.+|..+.. ++ +|++|++++|++++.+|..+..++ |++|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999999999998887 99999999999999899988876 66 999999999999999999999997 999999999
Q ss_pred cccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC-CCcCCCCCCEEEccCCCCCC-CCC
Q 037101 291 QLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP-LCRFLIEKGVLDVRNNCIPD-LPF 368 (395)
Q Consensus 291 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~i~~-lp~ 368 (395)
++++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++..| .+..+++|++|+|++|+|++ +|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99999999999999999999999999877665 8889999999999999997666 48999999999999999995 664
Q ss_pred CC--CchhhhcccCCCCCCCC
Q 037101 369 QR--SVAECADFFAHPRFCPH 387 (395)
Q Consensus 369 ~~--~~~~~~~~~~~~~~c~~ 387 (395)
.. ......++.+|+++|-.
T Consensus 287 ~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 287 GGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp STTGGGSCGGGTCSSSEEEST
T ss_pred CccccccChHHhcCCCCccCC
Confidence 32 22344567778877754
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=258.21 Aligned_cols=292 Identities=17% Similarity=0.171 Sum_probs=229.0
Q ss_pred CcceeeeCCCCC----CCccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCC
Q 037101 96 NYKGFYCESPPD----NETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNN 171 (395)
Q Consensus 96 ~w~gv~c~~~~~----~~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n 171 (395)
.|..+.|....- ......++.|+|++|.+.+ ..+..|..+++|++|++++|.+++..|..|.++++|++|+|++|
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 366788864211 1223589999999999988 45667999999999999999999888999999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhcc-CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCch
Q 037101 172 KFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT-QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPR 249 (395)
Q Consensus 172 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~ 249 (395)
.+++..+..|.++++|++|+|++|++++..|..+.. ++|++|++++|.+.+..+..+.. ++|++|++++|.+. .++.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccCh
Confidence 999666667899999999999999998655555444 89999999999998777777776 89999999999998 5666
Q ss_pred HHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcE------------------------EEccCCcccccCchhccCCCC
Q 037101 250 SIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVV------------------------FDVGDNQLTGQLPFSLACLEK 305 (395)
Q Consensus 250 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~------------------------L~Ls~n~l~~~~p~~l~~l~~ 305 (395)
..+..+++|++|++++|.+.+..+..+..+++|+. |++++|++++..+..+..+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 66666889999999988887666656666555555 455555666433356778888
Q ss_pred CCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC-CCcCCCCCCEEEccCCCCCCCCCCC----CchhhhcccC
Q 037101 306 VEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP-LCRFLIEKGVLDVRNNCIPDLPFQR----SVAECADFFA 380 (395)
Q Consensus 306 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~i~~lp~~~----~~~~~~~~~~ 380 (395)
|++|+|++|.+++..+..|..+++|+.|+|++|.++++.+ .+..+++|++|+|++|+|+++|... ....-.++.+
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 8889999888887777778888999999999999988766 4888999999999999999987532 1223345666
Q ss_pred CCC--CCCCCC
Q 037101 381 HPR--FCPHMW 389 (395)
Q Consensus 381 ~~~--~c~~~~ 389 (395)
||. .|...|
T Consensus 330 N~l~c~c~~~~ 340 (477)
T 2id5_A 330 NPLACDCRLLW 340 (477)
T ss_dssp SCEECSGGGHH
T ss_pred CCccCccchHh
Confidence 764 444433
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3e-31 Score=255.88 Aligned_cols=251 Identities=21% Similarity=0.189 Sum_probs=176.9
Q ss_pred cccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 037101 111 AIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFL 190 (395)
Q Consensus 111 ~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 190 (395)
..+++.|+++++.+.. ..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhh-CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 3577888888888776 344556778888888888888887667778888888888888888887777778888888888
Q ss_pred EeecCcCCCCCCchhcc--CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhc-------------
Q 037101 191 DIRFNYFTGSVPPQIFT--QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKA------------- 254 (395)
Q Consensus 191 ~Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~------------- 254 (395)
++++|.++ .+|..++. ++|++|++++|.+.+..+..+.. ++|++|++++|.+.+ ++...+..
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTTCSEEECCSSCCSE
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cccccccccceeecccccccc
Confidence 88888887 67766543 78888888888888666666665 788888888888763 32211110
Q ss_pred ------------------------CCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeee
Q 037101 255 ------------------------FSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLN 310 (395)
Q Consensus 255 ------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 310 (395)
.++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 12344444444444432 3456667777777777777766666777777777777
Q ss_pred cccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcCCCCCCEEEccCCCCCCCC
Q 037101 311 FANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 311 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~lp 367 (395)
+++|++++ ++..+..+++|+.|++++|.++++++.+..+++|++|+|++|.|+.++
T Consensus 279 L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp CCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC
Confidence 77777744 355556667777777777777766666666777777777777777665
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.9e-31 Score=269.90 Aligned_cols=251 Identities=21% Similarity=0.194 Sum_probs=177.6
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLD 191 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 191 (395)
..++.++++++.+.. +.+..+..+++|++|++++|.+.+..+..|+.+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 467778888887776 3455567788888888888888877777788888888888888888877777778888888888
Q ss_pred eecCcCCCCCCchhcc--CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhc--------------
Q 037101 192 IRFNYFTGSVPPQIFT--QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKA-------------- 254 (395)
Q Consensus 192 Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~-------------- 254 (395)
|++|.++ .+|..++. ++|++|++++|.+.+..|..+.. ++|++|++++|.+.+ ++...+..
T Consensus 130 L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEEECCSSCCSEE
T ss_pred eeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhhhcccCccccc
Confidence 8888887 66665532 78888888888887776666666 778888888887763 33211110
Q ss_pred -----------------------CCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeec
Q 037101 255 -----------------------FSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNF 311 (395)
Q Consensus 255 -----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 311 (395)
.++|+.|++++|.+++ +..+..+++|+.|+|++|.+++..|..+..+++|+.|+|
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 285 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC
Confidence 1234444445555443 245667777777777777777776777777777777777
Q ss_pred ccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcCCCCCCEEEccCCCCCCCCC
Q 037101 312 ANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 312 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~lp~ 368 (395)
++|.+++ +|..+..+++|+.|+|++|.++++++.+..+++|++|+|++|.|+++|.
T Consensus 286 s~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~ 341 (597)
T 3oja_B 286 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL 341 (597)
T ss_dssp TTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC
T ss_pred CCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcCh
Confidence 7777755 4555666777777777777777766666677777777777777777653
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=258.59 Aligned_cols=254 Identities=15% Similarity=0.150 Sum_probs=217.4
Q ss_pred CccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 037101 109 ETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLE 188 (395)
Q Consensus 109 ~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 188 (395)
....+++.|+|++|.+.. ..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|+
T Consensus 77 ~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155 (477)
T ss_dssp TTCTTCCEEECCSSCCCS-CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred hCCccCCEEECCCCcCCc-cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence 345678888888888876 4455678888888888888888877787888888888888888888877777888888999
Q ss_pred EEEeecCcCCCCCCchhcc--CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccC
Q 037101 189 FLDIRFNYFTGSVPPQIFT--QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVN 265 (395)
Q Consensus 189 ~L~Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~ 265 (395)
+|++++|.++ .+|...+. ++|+.|++++|.+.+..+..+.. ++|++|++++|.+.+.++...+. ..+|++|++++
T Consensus 156 ~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~ 233 (477)
T 2id5_A 156 QLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITH 233 (477)
T ss_dssp EEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEES
T ss_pred EEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-CccccEEECcC
Confidence 9999998888 56654333 78999999999888766666666 88999999999888788877766 56999999999
Q ss_pred CcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC
Q 037101 266 NQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP 345 (395)
Q Consensus 266 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 345 (395)
|+++...+..+..+++|++|+|++|.+++..+..+..+++|++|+|++|++.+..|..|..+++|+.|++++|.++++++
T Consensus 234 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred CcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence 99996555788999999999999999998888889999999999999999999989999999999999999999999877
Q ss_pred C-CcCCCCCCEEEccCCCCCC
Q 037101 346 L-CRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 346 ~-~~~l~~L~~L~L~~N~i~~ 365 (395)
. +..+++|++|+|++|.+..
T Consensus 314 ~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 314 SVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp GGBSCGGGCCEEECCSSCEEC
T ss_pred hHcCCCcccCEEEccCCCccC
Confidence 5 7889999999999999875
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.8e-30 Score=240.47 Aligned_cols=262 Identities=17% Similarity=0.212 Sum_probs=189.5
Q ss_pred CCCcceeeeCCCCCC----CccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEcc
Q 037101 94 ICNYKGFYCESPPDN----ETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDIS 169 (395)
Q Consensus 94 ~C~w~gv~c~~~~~~----~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls 169 (395)
.|.|+.+.|....-. .....++.|++++|.+.+ ..+..|..+++|++|++++|.+++..|..+.++++|++|+++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCE-eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 467888888642111 122467788888888776 344567788888888888888887777778888888888888
Q ss_pred CCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhcc--CCCCeeeeccccCcc--cCCccccC-ccccEEEcccCCCC
Q 037101 170 NNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT--QNLDFLFINNNGFMI--KLPDNIGS-THILFLTLANNKFI 244 (395)
Q Consensus 170 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~--~~~~~~~~-~~L~~L~l~~n~l~ 244 (395)
+|.++ .+|..+. ++|++|++++|.++ .++...+. ++|++|++++|.+.. ..+..+.. ++|++|++++|.+.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 88887 5555443 67888888888887 44443322 778888888887753 44555555 77888888888877
Q ss_pred CCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhh
Q 037101 245 GPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAV 324 (395)
Q Consensus 245 ~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 324 (395)
.+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+
T Consensus 185 -~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 185 -TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp -SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred -cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 566544 367888888888888777777888888888888888888766667777888888888888875 567777
Q ss_pred cCCCCCcEEEccCCcccccCCC-Cc------CCCCCCEEEccCCCCCC
Q 037101 325 CGLPNLLHFSLSDNYFTHAGPL-CR------FLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 325 ~~l~~L~~L~L~~N~l~~~~~~-~~------~l~~L~~L~L~~N~i~~ 365 (395)
..+++|+.|++++|.++++++. +. ..+.++.|++++|.+..
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 7888888888888888877553 32 24677788888887765
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.3e-29 Score=238.89 Aligned_cols=247 Identities=18% Similarity=0.221 Sum_probs=217.6
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
+++.++++++.+.. ++..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 32 ~l~~l~~~~~~l~~--lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCS--CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccc--cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 67889999998886 44333 368999999999999887778999999999999999999888999999999999999
Q ss_pred ecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCC--CCchHHHhcCCCCcEEEccCCcCc
Q 037101 193 RFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIG--PLPRSIFKAFSELTEVLLVNNQLT 269 (395)
Q Consensus 193 s~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~l~~n~l~ 269 (395)
++|+++ .+|..++ ++|++|++++|.+.+..+..+.. ++|++|++++|.+.. ..+.. +..+++|++|++++|.++
T Consensus 108 s~n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-ccCCCCcCEEECCCCccc
Confidence 999998 8887766 89999999999999766666666 899999999999863 33444 445899999999999998
Q ss_pred ccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcC
Q 037101 270 GCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRF 349 (395)
Q Consensus 270 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 349 (395)
.+|..+. ++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++.++..+..
T Consensus 185 -~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~ 261 (330)
T 1xku_A 185 -TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261 (330)
T ss_dssp -SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT
T ss_pred -cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhcc
Confidence 4565443 8999999999999988889999999999999999999888888899999999999999999988888999
Q ss_pred CCCCCEEEccCCCCCCCCCC
Q 037101 350 LIEKGVLDVRNNCIPDLPFQ 369 (395)
Q Consensus 350 l~~L~~L~L~~N~i~~lp~~ 369 (395)
+++|++|++++|+|+++|..
T Consensus 262 l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTT
T ss_pred CCCcCEEECCCCcCCccChh
Confidence 99999999999999998753
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.6e-31 Score=270.99 Aligned_cols=255 Identities=18% Similarity=0.199 Sum_probs=181.8
Q ss_pred CCccccEEEEEcCCCCcCCC----------------CcccccC--CCCCCcEEECCCCCCCCCCccccCCCCCCCEEEcc
Q 037101 108 NETAIAVASIDFNGFQLSAP----------------TLDGFLD--QLPDIALFHANSNNFAGTISSNIAKLPYLYELDIS 169 (395)
Q Consensus 108 ~~~~~~l~~L~Ls~~~l~~~----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls 169 (395)
.....+++.|+|++|.+++. .+|..+. ++++|++|++++|.+.+.+|..++++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 45567899999999998872 0566677 89999999999999999999999999999999999
Q ss_pred CCC-CCC-CcchhhcCC------CCCcEEEeecCcCCCCCCc--hhcc-CCCCeeeeccccCcccCCccccC-ccccEEE
Q 037101 170 NNK-FSG-PFPAAVLGM------NNLEFLDIRFNYFTGSVPP--QIFT-QNLDFLFINNNGFMIKLPDNIGS-THILFLT 237 (395)
Q Consensus 170 ~n~-l~~-~~p~~l~~l------~~L~~L~Ls~n~l~~~~p~--~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~ 237 (395)
+|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .+.. ++|++|++++|.+.|.+| .+.. ++|++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 998 888 788888776 88999999999988 8887 5554 788888888888888888 5554 7777777
Q ss_pred cccCCCCCCCchHHHhcCCC-CcEEEccCCcCcccCchhhcCCC--CCcEEEccCCcccccCchhcc-------CCCCCC
Q 037101 238 LANNKFIGPLPRSIFKAFSE-LTEVLLVNNQLTGCLPYEIGYLK--EAVVFDVGDNQLTGQLPFSLA-------CLEKVE 307 (395)
Q Consensus 238 l~~n~l~~~~p~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~p~~l~-------~l~~L~ 307 (395)
+++|.+. .+|..+.. +++ |++|++++|.++ .+|..+..+. +|++|++++|++++..|..+. .+++|+
T Consensus 360 L~~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 360 LAYNQIT-EIPANFCG-FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp CCSSEEE-ECCTTSEE-ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred CCCCccc-cccHhhhh-hcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 7777777 67666444 666 777777777777 5666555543 677777777777666666555 555666
Q ss_pred eeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-CcCC-------CCCCEEEccCCCCCCCC
Q 037101 308 QLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFL-------IEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 308 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l-------~~L~~L~L~~N~i~~lp 367 (395)
+|++++|++++..+..+..+++|+.|++++|.++.++.. +... ++|++|+|++|+|+.+|
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 504 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC
Confidence 666666666533333344455666666666665544332 1111 15555555555555554
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=3.3e-30 Score=262.45 Aligned_cols=270 Identities=18% Similarity=0.148 Sum_probs=170.1
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
.++.|++++|.+.+ ..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 255 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSS-CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCc-cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 45666666665555 23444555556666666555555 44555555555555555555555444545555555555555
Q ss_pred ecCcCCCCCCch---------------------------hcc-CCCCeeeeccccCcccCCccccC-ccccEEEcccCCC
Q 037101 193 RFNYFTGSVPPQ---------------------------IFT-QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKF 243 (395)
Q Consensus 193 s~n~l~~~~p~~---------------------------~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l 243 (395)
++|.+.+.+|.. +.. ++|++|++++|.+.+..+..+.. ++|++|++++|.+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 555544444432 211 45566666666655555555554 6666777777666
Q ss_pred CCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCccccc---CchhccCCCCCCeeecccCcCCCCC
Q 037101 244 IGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQ---LPFSLACLEKVEQLNFANNLLFGMV 320 (395)
Q Consensus 244 ~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~ 320 (395)
.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 6555544444567777777777777766677777777788888888777652 2345677778888888888887777
Q ss_pred hhhhcCCCCCcEEEccCCcccccCC-CCcCCCCCCEEEccCCCCCCCCCCC----CchhhhcccCCCCCC
Q 037101 321 PEAVCGLPNLLHFSLSDNYFTHAGP-LCRFLIEKGVLDVRNNCIPDLPFQR----SVAECADFFAHPRFC 385 (395)
Q Consensus 321 p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~i~~lp~~~----~~~~~~~~~~~~~~c 385 (395)
|..|..+++|+.|++++|++++.++ .+..+++| +|+|++|++++++... ......++.+||..|
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 7778888888888888888887665 37778888 8888888888776432 112344566676544
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.8e-30 Score=241.13 Aligned_cols=260 Identities=20% Similarity=0.234 Sum_probs=177.1
Q ss_pred CCcceeeeCCCCCC----CccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccC
Q 037101 95 CNYKGFYCESPPDN----ETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISN 170 (395)
Q Consensus 95 C~w~gv~c~~~~~~----~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~ 170 (395)
|.|+.+.|....-. ....+++.|++++|.+.+ ..+..+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc-cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 56777777542110 112467777777777765 3445677777777777777777766677777777777777777
Q ss_pred CCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhcc--CCCCeeeeccccCc--ccCCccccCccccEEEcccCCCCCC
Q 037101 171 NKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT--QNLDFLFINNNGFM--IKLPDNIGSTHILFLTLANNKFIGP 246 (395)
Q Consensus 171 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~ 246 (395)
|.++ .+|..+. ++|++|++++|+++ .+|...+. ++|++|++++|.+. +..+..+...+|++|++++|.+. .
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~-~ 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-G 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS-S
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC-c
Confidence 7777 5555443 67777777777777 45544332 67777777777774 24444444457777777777777 4
Q ss_pred CchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcC
Q 037101 247 LPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCG 326 (395)
Q Consensus 247 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 326 (395)
+|..+ .++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 187 l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 IPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp CCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred cCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 66543 257777777777777666667777777777777777777666666777777777777777775 56666777
Q ss_pred CCCCcEEEccCCcccccCCC-CcC------CCCCCEEEccCCCCC
Q 037101 327 LPNLLHFSLSDNYFTHAGPL-CRF------LIEKGVLDVRNNCIP 364 (395)
Q Consensus 327 l~~L~~L~L~~N~l~~~~~~-~~~------l~~L~~L~L~~N~i~ 364 (395)
+++|+.|++++|+++++++. +.. .+.|+.|++++|.+.
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 77777777777777776543 322 456777777777776
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=8.1e-30 Score=256.51 Aligned_cols=272 Identities=18% Similarity=0.223 Sum_probs=182.5
Q ss_pred CCCcceeeeCCC-------CCCCccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEE
Q 037101 94 ICNYKGFYCESP-------PDNETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYEL 166 (395)
Q Consensus 94 ~C~w~gv~c~~~-------~~~~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 166 (395)
.|.|.|+ |+.. |. ....+++.|++++|.+.+ ..+..|..+++|++|++++|.+++..|..|.++++|++|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~-~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPS-GLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCS-CCCTTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCCCce-EECCCCccccccc-cCCCCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence 4777777 6532 11 123579999999999887 345678899999999999999988888889999999999
Q ss_pred EccCCCCCCCcchhhcCCCCCcEEEeecCcCCC-CCCchhcc-CCCCeeeeccccCcccCC-ccccC-ccccEEEcccCC
Q 037101 167 DISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTG-SVPPQIFT-QNLDFLFINNNGFMIKLP-DNIGS-THILFLTLANNK 242 (395)
Q Consensus 167 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~-~~L~~L~L~~n~l~~~~~-~~~~~-~~L~~L~l~~n~ 242 (395)
++++|.+++..+..|+++++|++|++++|.+++ ..|..+.. ++|++|++++|.+.+.++ ..+.. ++|++|++++|.
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 999999998777778999999999999998874 23443333 677777777776444444 33443 566666666666
Q ss_pred CCCCCc-----------------------hHHHhcCCCCcEEEccCCcCccc----------------------------
Q 037101 243 FIGPLP-----------------------RSIFKAFSELTEVLLVNNQLTGC---------------------------- 271 (395)
Q Consensus 243 l~~~~p-----------------------~~~~~~l~~L~~L~l~~n~l~~~---------------------------- 271 (395)
+.+..| ..++..+++|++|++++|++++.
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred ccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 554333 22233356666677666665542
Q ss_pred --------------------------------------------------------------------------------
Q 037101 272 -------------------------------------------------------------------------------- 271 (395)
Q Consensus 272 -------------------------------------------------------------------------------- 271 (395)
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence
Q ss_pred -----Cchhh-cCCCCCcEEEccCCcccccCch---hccCCCCCCeeecccCcCCCCCh--hhhcCCCCCcEEEccCCcc
Q 037101 272 -----LPYEI-GYLKEAVVFDVGDNQLTGQLPF---SLACLEKVEQLNFANNLLFGMVP--EAVCGLPNLLHFSLSDNYF 340 (395)
Q Consensus 272 -----~~~~~-~~l~~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~L~~N~l 340 (395)
+|..+ ..+++|++|++++|++++..|. .+..+++|++|++++|++++..+ ..+..+++|++|++++|++
T Consensus 320 n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred CccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence 12222 2456666666666666654432 25566677777777777654322 3466677777777777777
Q ss_pred cccCCCCcCCCCCCEEEccCCCCCCCCC
Q 037101 341 THAGPLCRFLIEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 341 ~~~~~~~~~l~~L~~L~L~~N~i~~lp~ 368 (395)
++++..+..+++|++|++++|.|+.+|.
T Consensus 400 ~~lp~~~~~~~~L~~L~Ls~N~l~~l~~ 427 (549)
T 2z81_A 400 HPMPDSCQWPEKMRFLNLSSTGIRVVKT 427 (549)
T ss_dssp CCCCSCCCCCTTCCEEECTTSCCSCCCT
T ss_pred ccCChhhcccccccEEECCCCCcccccc
Confidence 7666566667777777777777766653
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.1e-29 Score=239.55 Aligned_cols=246 Identities=19% Similarity=0.235 Sum_probs=215.9
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
+++.++++++.+.. ++..+ .++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~~--ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA--VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSS--CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccc--cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 67889999999886 44433 379999999999999877888999999999999999999888999999999999999
Q ss_pred ecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCC--CCchHHHhcCCCCcEEEccCCcCc
Q 037101 193 RFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIG--PLPRSIFKAFSELTEVLLVNNQLT 269 (395)
Q Consensus 193 s~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~l~~n~l~ 269 (395)
++|+++ .+|..++ ++|++|++++|.+....+..+.. ++|++|++++|.+.. ..+.. +..+ +|++|++++|+++
T Consensus 110 ~~n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-SCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccc-ccCC-ccCEEECcCCCCC
Confidence 999998 8888776 89999999999999655555666 899999999999863 33333 4435 8999999999999
Q ss_pred ccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcC
Q 037101 270 GCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRF 349 (395)
Q Consensus 270 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 349 (395)
+ +|..+. ++|++|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.++.++..+..
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~ 262 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD 262 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhc
Confidence 4 665543 7999999999999988788999999999999999999988888899999999999999999988888999
Q ss_pred CCCCCEEEccCCCCCCCCCC
Q 037101 350 LIEKGVLDVRNNCIPDLPFQ 369 (395)
Q Consensus 350 l~~L~~L~L~~N~i~~lp~~ 369 (395)
+++|++|++++|+|+++|..
T Consensus 263 l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTT
T ss_pred CccCCEEECCCCCCCccChh
Confidence 99999999999999998753
No 21
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=5.1e-30 Score=244.04 Aligned_cols=272 Identities=17% Similarity=0.187 Sum_probs=221.5
Q ss_pred CCCCCCcceeeeCCCCC------CCccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCC
Q 037101 91 GSDICNYKGFYCESPPD------NETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLY 164 (395)
Q Consensus 91 ~~~~C~w~gv~c~~~~~------~~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 164 (395)
....|.|.++ |+.... .....+++.|++++|.+.+ ..+..+..+++|++|++++|.+++..+..|.++++|+
T Consensus 26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 4567899987 653211 0123489999999999987 3455789999999999999999988888899999999
Q ss_pred EEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCc-hhc--cCCCCeeeecccc-CcccCCccccC-ccccEEEcc
Q 037101 165 ELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPP-QIF--TQNLDFLFINNNG-FMIKLPDNIGS-THILFLTLA 239 (395)
Q Consensus 165 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~--~~~L~~L~L~~n~-l~~~~~~~~~~-~~L~~L~l~ 239 (395)
+|++++|++++..+..|.++++|++|++++|+++ .+|. ..+ .++|++|++++|. +....+..+.. ++|++|+++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 9999999999666666999999999999999998 6776 333 3899999999995 55555566666 899999999
Q ss_pred cCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhcc---CCCCCCeeecccCcC
Q 037101 240 NNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLA---CLEKVEQLNFANNLL 316 (395)
Q Consensus 240 ~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l 316 (395)
+|.+.+..|..+.. +++|++|++++|.+.......+..+++|++|++++|++++..+..+. ....++.++++++.+
T Consensus 183 ~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 183 ASDLQSYEPKSLKS-IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp ETTCCEECTTTTTT-CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred CCCcCccCHHHHhc-cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 99999666666554 89999999999999744444456689999999999999975554433 456788899999988
Q ss_pred CC----CChhhhcCCCCCcEEEccCCcccccCCC-CcCCCCCCEEEccCCCCCCC
Q 037101 317 FG----MVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFLIEKGVLDVRNNCIPDL 366 (395)
Q Consensus 317 ~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~i~~l 366 (395)
.+ .+|..+..+++|+.|++++|+++.++.. +..+++|++|+|++|++..-
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 66 3677899999999999999999988776 58999999999999998873
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.8e-29 Score=252.38 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=92.4
Q ss_pred ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcc--cCchhhcCCCCCcEEEccCCcccccCchh-ccCCCCCC
Q 037101 231 THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTG--CLPYEIGYLKEAVVFDVGDNQLTGQLPFS-LACLEKVE 307 (395)
Q Consensus 231 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~ 307 (395)
++|++|++++|++.+.+|..+.. +++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|.. +..+++|+
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCC-CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CcccEEEeECCccChhhhhhhcc-CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 45555555555555444444332 5566666666666554 33445556666666666666666434432 55556666
Q ss_pred eeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcCCCCCCEEEccCCCCCCCCCC-C---CchhhhcccCCCC
Q 037101 308 QLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPDLPFQ-R---SVAECADFFAHPR 383 (395)
Q Consensus 308 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~lp~~-~---~~~~~~~~~~~~~ 383 (395)
+|++++|++++.+|..+. ++|+.|++++|+++.++..+..+++|++|+|++|+|+.+|.. . ......++.+|+.
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence 666666666555544433 678888888888876666667888899999999999888854 1 1223345556665
Q ss_pred CC
Q 037101 384 FC 385 (395)
Q Consensus 384 ~c 385 (395)
.|
T Consensus 481 ~c 482 (520)
T 2z7x_B 481 DC 482 (520)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=2.8e-29 Score=255.65 Aligned_cols=252 Identities=17% Similarity=0.193 Sum_probs=180.5
Q ss_pred cEEEEEcCCCCcCC--CCcccccCCCC--CCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 037101 113 AVASIDFNGFQLSA--PTLDGFLDQLP--DIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLE 188 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~--~~~~~~l~~l~--~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 188 (395)
.+..+.+....-.. .+....+..+. +|+.+++++|.+++..+..|..+++|++|++++|.++ .+|..+.++++|+
T Consensus 226 ~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~ 304 (606)
T 3t6q_A 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK 304 (606)
T ss_dssp EEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCC
T ss_pred chhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCC
Confidence 55666654432111 12233344444 7999999999999888888999999999999999999 7888999999999
Q ss_pred EEEeecCcCCCCCCchhcc-CCCCeeeeccccCcccCCcc-ccC-ccccEEEcccCCCCCCC--chHHHhcCCCCcEEEc
Q 037101 189 FLDIRFNYFTGSVPPQIFT-QNLDFLFINNNGFMIKLPDN-IGS-THILFLTLANNKFIGPL--PRSIFKAFSELTEVLL 263 (395)
Q Consensus 189 ~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~-~~~-~~L~~L~l~~n~l~~~~--p~~~~~~l~~L~~L~l 263 (395)
+|++++|.+++..|..+.. ++|++|++++|.+.+.++.. +.. ++|++|++++|.+.+.. +..+ ..+++|++|++
T Consensus 305 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l 383 (606)
T 3t6q_A 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL-RNLSHLQSLNL 383 (606)
T ss_dssp EEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT-TTCTTCCEEEC
T ss_pred EEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc-ccCCCCCEEEC
Confidence 9999999999555544444 89999999999888777654 444 78888888888877433 3333 33777888888
Q ss_pred cCCcCcccCchhhcCCCCCcEEEccCCcccccCch-hccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccc
Q 037101 264 VNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPF-SLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTH 342 (395)
Q Consensus 264 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 342 (395)
++|.+.+..+..+..+++|++|++++|++++..+. .+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++
T Consensus 384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp CSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 88877766677777777777777777777655443 36667777777777777766666666666777777777776665
Q ss_pred c--C--CCCcCCCCCCEEEccCCCCCCC
Q 037101 343 A--G--PLCRFLIEKGVLDVRNNCIPDL 366 (395)
Q Consensus 343 ~--~--~~~~~l~~L~~L~L~~N~i~~l 366 (395)
. + ..+..+++|++|++++|.++++
T Consensus 464 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 464 GNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp GEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred cccccchhhccCCCccEEECCCCccCcc
Confidence 2 1 1255666666666666666654
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.6e-29 Score=238.18 Aligned_cols=214 Identities=20% Similarity=0.239 Sum_probs=184.4
Q ss_pred CCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhcc-CCCCee
Q 037101 135 QLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT-QNLDFL 213 (395)
Q Consensus 135 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L 213 (395)
...+++.|++++|.+. .+|..+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.. ++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 77888888999999999999999 88988999999999999999998 88877655 788888
Q ss_pred eeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCccc
Q 037101 214 FINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLT 293 (395)
Q Consensus 214 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 293 (395)
++++|.+.+.+|..+.. . .+.+. +..+++|++|++++|+++ .+|..++.+++|++|++++|+++
T Consensus 156 ~L~~n~~~~~~p~~~~~-----~-----~~~~~-----~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS-----T-----DASGE-----HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE-----E-----C-CCC-----EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh-----c-----cchhh-----hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 88888877777765442 1 11111 234889999999999999 88999999999999999999999
Q ss_pred ccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC-CCcCCCCCCEEEccCCCCCC-CCC
Q 037101 294 GQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP-LCRFLIEKGVLDVRNNCIPD-LPF 368 (395)
Q Consensus 294 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~i~~-lp~ 368 (395)
.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..| .+..+++|++|+|++|++.+ +|.
T Consensus 220 -~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 220 -ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp -CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred -cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 567789999999999999999999999999999999999999999888766 58999999999999988766 663
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=6.3e-29 Score=250.96 Aligned_cols=131 Identities=18% Similarity=0.150 Sum_probs=81.6
Q ss_pred CCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccc--cCchhccCCCCCCeeecccCcCCCCChhh-hcC-----
Q 037101 255 FSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTG--QLPFSLACLEKVEQLNFANNLLFGMVPEA-VCG----- 326 (395)
Q Consensus 255 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~----- 326 (395)
+++|++|++++|++++.+|..++.+++|++|++++|++++ .+|..+..+++|++|++++|++.+.+|.. +..
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 4566666666666666566666666666666666666664 22344555666666666666655433321 222
Q ss_pred ----------------C-CCCcEEEccCCcccccCCCCcCCCCCCEEEccCCCCCCCCCC-C---CchhhhcccCCCCCC
Q 037101 327 ----------------L-PNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPDLPFQ-R---SVAECADFFAHPRFC 385 (395)
Q Consensus 327 ----------------l-~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~lp~~-~---~~~~~~~~~~~~~~c 385 (395)
+ ++|+.|++++|+++.+++.+..+++|++|+|++|+|+.+|.. . ......++.+||..|
T Consensus 432 ~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp EEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred EEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 2 577777777777777766666888999999999999988854 1 112234556666544
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.7e-29 Score=235.62 Aligned_cols=227 Identities=18% Similarity=0.227 Sum_probs=172.9
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCC--CcchhhcCCCCCcEEEeecCcCCCCCCchhcc-CCCCee
Q 037101 137 PDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSG--PFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT-QNLDFL 213 (395)
Q Consensus 137 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L 213 (395)
++|++|++++|.++...+..|.++++|++|++++|.++. ..+..+..+++|++|++++|.++ .+|..+.. ++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 467777777777764333446777777777777777762 23556667777777777777776 55554433 677777
Q ss_pred eeccccCcccCC-ccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcc-cCchhhcCCCCCcEEEccCC
Q 037101 214 FINNNGFMIKLP-DNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTG-CLPYEIGYLKEAVVFDVGDN 290 (395)
Q Consensus 214 ~L~~n~l~~~~~-~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n 290 (395)
++++|.+.+..+ ..+.. ++|++|++++|.+.+..+..+ ..+++|++|++++|.+++ .+|..+..+++|++|++++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc-ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 777777764443 33444 788888888888875555443 448899999999999886 57888889999999999999
Q ss_pred cccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-CcCCC-CCCEEEccCCCCCC
Q 037101 291 QLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFLI-EKGVLDVRNNCIPD 365 (395)
Q Consensus 291 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~-~L~~L~L~~N~i~~ 365 (395)
++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++.++. +..++ +|++|+|++|.++.
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 99987788888999999999999999887777888899999999999999987664 77774 89999999998876
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.1e-29 Score=251.90 Aligned_cols=112 Identities=22% Similarity=0.186 Sum_probs=70.9
Q ss_pred CCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccc--cCchhccCCCCCCeeecccCcCCCCChhh-hcCCCCCc
Q 037101 255 FSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTG--QLPFSLACLEKVEQLNFANNLLFGMVPEA-VCGLPNLL 331 (395)
Q Consensus 255 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~ 331 (395)
+++|++|++++|++++.+|..++.+++|++|++++|++++ .+|..+..+++|++|++++|.+.+.+|.. +..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 5566666666666666566666666666666666666664 34455666666666666666665544442 55666666
Q ss_pred EEEccCCcccccCCC-CcCCCCCCEEEccCCCCCCCCC
Q 037101 332 HFSLSDNYFTHAGPL-CRFLIEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 332 ~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~i~~lp~ 368 (395)
.|++++|.+++..+. +. ++|++|+|++|+|+.+|.
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~ 438 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPK 438 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCG
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCcccccch
Confidence 666666666554332 21 577777888887777774
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=4.3e-29 Score=254.26 Aligned_cols=275 Identities=15% Similarity=0.121 Sum_probs=199.6
Q ss_pred CccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCC-CcchhhcCCCCC
Q 037101 109 ETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSG-PFPAAVLGMNNL 187 (395)
Q Consensus 109 ~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L 187 (395)
....+++.|++++|.+.+ ..+..|.++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..|+++++|
T Consensus 77 ~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 155 (606)
T 3vq2_A 77 HGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155 (606)
T ss_dssp TTCTTCCEEECTTCCCCC-CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred hchhhcCEeECCCCcccc-cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence 455689999999999988 457789999999999999999998777889999999999999999986 579999999999
Q ss_pred cEEEeecCcCCCCCCchhcc----------------------------CCCCeeee------------------------
Q 037101 188 EFLDIRFNYFTGSVPPQIFT----------------------------QNLDFLFI------------------------ 215 (395)
Q Consensus 188 ~~L~Ls~n~l~~~~p~~~~~----------------------------~~L~~L~L------------------------ 215 (395)
++|++++|++++..|..+.. .+|+.|++
T Consensus 156 ~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~ 235 (606)
T 3vq2_A 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235 (606)
T ss_dssp CEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEE
T ss_pred CEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccc
Confidence 99999999887533321100 01222222
Q ss_pred -------------------------------------------------------------------------------c
Q 037101 216 -------------------------------------------------------------------------------N 216 (395)
Q Consensus 216 -------------------------------------------------------------------------------~ 216 (395)
+
T Consensus 236 l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~ 315 (606)
T 3vq2_A 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSII 315 (606)
T ss_dssp EEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEE
T ss_pred ccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcc
Confidence 2
Q ss_pred cccCcccCC---------------------------------------------------------------------cc
Q 037101 217 NNGFMIKLP---------------------------------------------------------------------DN 227 (395)
Q Consensus 217 ~n~l~~~~~---------------------------------------------------------------------~~ 227 (395)
+|.+ +.+| ..
T Consensus 316 ~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 394 (606)
T 3vq2_A 316 RCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394 (606)
T ss_dssp SCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCC
T ss_pred cccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhh
Confidence 2221 1111 11
Q ss_pred ccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccc-cCchhccCCCC
Q 037101 228 IGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTG-QLPFSLACLEK 305 (395)
Q Consensus 228 ~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~ 305 (395)
+.. ++|++|++++|.+.+..+...+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 111 2333333333333333332233346677777777777776677777888888888888888886 36778888899
Q ss_pred CCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC-CCcCCCCCCEEEccCCCCCCCCCCCCc----hhhhcccC
Q 037101 306 VEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP-LCRFLIEKGVLDVRNNCIPDLPFQRSV----AECADFFA 380 (395)
Q Consensus 306 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~i~~lp~~~~~----~~~~~~~~ 380 (395)
|++|++++|++++..|..+..+++|+.|++++|++++.++ .+..+++|++|+|++|+|+.+|..... ....++.+
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCS
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccC
Confidence 9999999999988888889999999999999999998855 488899999999999999998854211 33446777
Q ss_pred CCCCC
Q 037101 381 HPRFC 385 (395)
Q Consensus 381 ~~~~c 385 (395)
||..|
T Consensus 555 N~~~c 559 (606)
T 3vq2_A 555 NSVAC 559 (606)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 87544
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7.8e-29 Score=242.89 Aligned_cols=242 Identities=19% Similarity=0.174 Sum_probs=183.3
Q ss_pred EEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecC
Q 037101 116 SIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFN 195 (395)
Q Consensus 116 ~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 195 (395)
.++.++.++.. +|..+ .++++.|++++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 47 ~v~c~~~~l~~--iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 47 KVICVRKNLRE--VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp EEECCSCCCSS--CCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred EEEeCCCCcCc--CCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34444555554 33322 257778888888887777777788888888888888887666677888888888888888
Q ss_pred cCCCCCCchhcc--CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccC
Q 037101 196 YFTGSVPPQIFT--QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCL 272 (395)
Q Consensus 196 ~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~ 272 (395)
+++ .+|...+. ++|++|++++|.+....+..+.. ++|++|++++|...+.++...+..+++|++|++++|+++ .+
T Consensus 123 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 123 RLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp CCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred cCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 887 55554333 77888888888877555555555 788888888866555677666666888888888888888 45
Q ss_pred chhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-CcCCC
Q 037101 273 PYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFLI 351 (395)
Q Consensus 273 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~ 351 (395)
| .+..+++|++|+|++|++++..|..+..+++|++|++++|++++..+..|..+++|+.|+|++|+++++++. +..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 5 377888888888888888877788888888888888888888888788888888888888888888887765 67888
Q ss_pred CCCEEEccCCCCC
Q 037101 352 EKGVLDVRNNCIP 364 (395)
Q Consensus 352 ~L~~L~L~~N~i~ 364 (395)
+|+.|+|++|.+.
T Consensus 280 ~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 280 HLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEcCCCCcc
Confidence 8888888888764
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=7.2e-29 Score=243.96 Aligned_cols=225 Identities=18% Similarity=0.186 Sum_probs=172.1
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhcc--CCCCeee
Q 037101 137 PDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT--QNLDFLF 214 (395)
Q Consensus 137 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--~~L~~L~ 214 (395)
+++++|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+++ .+|...+. ++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEE
Confidence 56777777777777766777777777777777777777666677777777777777777777 55544333 6777777
Q ss_pred eccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCccc
Q 037101 215 INNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLT 293 (395)
Q Consensus 215 L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 293 (395)
+++|.+....+..+.. ++|++|++++|...+.++...+..+++|++|++++|++++ +| .+..+++|++|+|++|+++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCc
Confidence 7777777444445554 7888888888655556776666668888888888888884 34 4777888888888888888
Q ss_pred ccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-CcCCCCCCEEEccCCCCC
Q 037101 294 GQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFLIEKGVLDVRNNCIP 364 (395)
Q Consensus 294 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~i~ 364 (395)
+..|..+..+++|++|++++|++.+..+..|..+++|+.|+|++|+++++++. +..+++|+.|+|++|.+.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77788888888888888888888887788888888888888888888887665 677888888888888754
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.2e-28 Score=258.00 Aligned_cols=247 Identities=16% Similarity=0.164 Sum_probs=171.2
Q ss_pred cEEEEEcCCCCcCCCCccc--ccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCC-CcE
Q 037101 113 AVASIDFNGFQLSAPTLDG--FLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNN-LEF 189 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~ 189 (395)
+++.|++++|.+.. ++. .+..+++|+.|++++|.++ .+| .++.+++|++|+|++|.++ .+|..+..+++ |++
T Consensus 549 ~L~~L~Ls~N~L~~--ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 549 KIQIFYMGYNNLEE--FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEG 623 (876)
T ss_dssp TCCEEECCSSCCCB--CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCE
T ss_pred CccEEEeeCCcCCc--cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCE
Confidence 34444444444442 333 4555555555555555555 444 4555555555555555555 55555555555 666
Q ss_pred EEeecCcCCCCCCchhcc---CCCCeeeeccccCcccCCccc---c---CccccEEEcccCCCCCCCchHHHhcCCCCcE
Q 037101 190 LDIRFNYFTGSVPPQIFT---QNLDFLFINNNGFMIKLPDNI---G---STHILFLTLANNKFIGPLPRSIFKAFSELTE 260 (395)
Q Consensus 190 L~Ls~n~l~~~~p~~~~~---~~L~~L~L~~n~l~~~~~~~~---~---~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~ 260 (395)
|+|++|.++ .+|..+.. ++|+.|++++|.+.+.+|... . ..+|++|++++|.+. .+|..++..+++|++
T Consensus 624 L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~ 701 (876)
T 4ecn_A 624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPIST 701 (876)
T ss_dssp EECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSE
T ss_pred EECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCE
Confidence 666666655 55544333 236666666666665444322 1 147888888888888 788888877899999
Q ss_pred EEccCCcCcccCchhhcCC--------CCCcEEEccCCcccccCchhcc--CCCCCCeeecccCcCCCCChhhhcCCCCC
Q 037101 261 VLLVNNQLTGCLPYEIGYL--------KEAVVFDVGDNQLTGQLPFSLA--CLEKVEQLNFANNLLFGMVPEAVCGLPNL 330 (395)
Q Consensus 261 L~l~~n~l~~~~~~~~~~l--------~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 330 (395)
|++++|+++ .+|..+... ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|
T Consensus 702 L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L 778 (876)
T 4ecn_A 702 IILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL 778 (876)
T ss_dssp EECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC
T ss_pred EECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC
Confidence 999999998 666554432 28999999999999 7888887 89999999999999977 78888899999
Q ss_pred cEEEccC------CcccccCC-CCcCCCCCCEEEccCCCCCCCCCC
Q 037101 331 LHFSLSD------NYFTHAGP-LCRFLIEKGVLDVRNNCIPDLPFQ 369 (395)
Q Consensus 331 ~~L~L~~------N~l~~~~~-~~~~l~~L~~L~L~~N~i~~lp~~ 369 (395)
+.|+|++ |.+.+..| .+..+++|+.|+|++|+|..+|..
T Consensus 779 ~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~ 824 (876)
T 4ecn_A 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK 824 (876)
T ss_dssp CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred CEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHh
Confidence 9999976 67776655 588999999999999999888854
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.3e-28 Score=249.41 Aligned_cols=272 Identities=19% Similarity=0.168 Sum_probs=197.7
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLD 191 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 191 (395)
..++.|||++|.+++ +.+..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 478999999999987 4566789999999999999999877777899999999999999999866667788999999999
Q ss_pred eecCcCCCCCCchhcc--CCCCeeeeccccCcc-cCCccccC-ccccEEEcccCCCCCCCchHHH---------------
Q 037101 192 IRFNYFTGSVPPQIFT--QNLDFLFINNNGFMI-KLPDNIGS-THILFLTLANNKFIGPLPRSIF--------------- 252 (395)
Q Consensus 192 Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~-~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~--------------- 252 (395)
|++|+++ .+|...+. ++|++|++++|.+.. ..|..++. ++|++|++++|++.+..+..+.
T Consensus 131 Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 131 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp CTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred CCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 9999888 55544332 678888888887754 34555554 6677777776665421111000
Q ss_pred ------------------------------------h-------------------------------------------
Q 037101 253 ------------------------------------K------------------------------------------- 253 (395)
Q Consensus 253 ------------------------------------~------------------------------------------- 253 (395)
.
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 0
Q ss_pred -------------------------------------------------------------------------------c
Q 037101 254 -------------------------------------------------------------------------------A 254 (395)
Q Consensus 254 -------------------------------------------------------------------------------~ 254 (395)
.
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 369 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 369 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCB
T ss_pred hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccc
Confidence 0
Q ss_pred CCCCcEEEccCCcC------------------------------------------------------------------
Q 037101 255 FSELTEVLLVNNQL------------------------------------------------------------------ 268 (395)
Q Consensus 255 l~~L~~L~l~~n~l------------------------------------------------------------------ 268 (395)
+++|+.|++++|.+
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence 11233333333322
Q ss_pred --------cccCchhhcCCCCCcEEEccCCccc-ccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCc
Q 037101 269 --------TGCLPYEIGYLKEAVVFDVGDNQLT-GQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNY 339 (395)
Q Consensus 269 --------~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 339 (395)
.+..+..+..++.|++|++++|.+. +..|..+..+++|++|+|++|++++..|..|..+++|++|+|++|+
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~ 529 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence 1112223334456667777777643 3467778889999999999999999889999999999999999999
Q ss_pred ccccCCC-CcCCCCCCEEEccCCCCCCCCCCC-----CchhhhcccCCCCCC
Q 037101 340 FTHAGPL-CRFLIEKGVLDVRNNCIPDLPFQR-----SVAECADFFAHPRFC 385 (395)
Q Consensus 340 l~~~~~~-~~~l~~L~~L~L~~N~i~~lp~~~-----~~~~~~~~~~~~~~c 385 (395)
|+++++. +..+++|++|+|++|+|++++.+. ......++.+||+.|
T Consensus 530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9998775 889999999999999999976432 123345677787544
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=3e-28 Score=257.19 Aligned_cols=260 Identities=17% Similarity=0.210 Sum_probs=213.6
Q ss_pred CCccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccc--cCCCCCCCEEEccCCCCCCCcc-hhhcCC
Q 037101 108 NETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSN--IAKLPYLYELDISNNKFSGPFP-AAVLGM 184 (395)
Q Consensus 108 ~~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~--~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l 184 (395)
.....+++.|+|++|.+.+ ..+..|..+++|++|++++|.+++.++.. +.++++|++|+|++|.+++..+ ..|+++
T Consensus 69 f~~L~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L 147 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147 (844)
T ss_dssp TSSCTTCCEEECTTCCCCE-ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC
T ss_pred hcCCCCCCEEECCCCcCcc-cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC
Confidence 3455688999999998887 45777889999999999999998766655 8889999999999999986654 578899
Q ss_pred CCCcEEEeecCcCCCCCCchhcc---CCCCeeeeccccCcccCCccccC-------ccccEEEcccCCCCCCCchHHHhc
Q 037101 185 NNLEFLDIRFNYFTGSVPPQIFT---QNLDFLFINNNGFMIKLPDNIGS-------THILFLTLANNKFIGPLPRSIFKA 254 (395)
Q Consensus 185 ~~L~~L~Ls~n~l~~~~p~~~~~---~~L~~L~L~~n~l~~~~~~~~~~-------~~L~~L~l~~n~l~~~~p~~~~~~ 254 (395)
++|++|++++|.+++..+..+.. ++|+.|++++|.+.+..+..++. .+|++|++++|.+.+.++..+...
T Consensus 148 ~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 148 NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence 99999999999998777766544 78888899888888777665543 248999999998776555444321
Q ss_pred -------------------------------------CCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCc
Q 037101 255 -------------------------------------FSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLP 297 (395)
Q Consensus 255 -------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 297 (395)
.++|++|++++|.+.+..+..+..+++|+.|+|++|++++..|
T Consensus 228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence 2578999999999988888888999999999999999998888
Q ss_pred hhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-CcCCCCCCEEEccCCCCCCCCC
Q 037101 298 FSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFLIEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 298 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~i~~lp~ 368 (395)
..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.++++++. +..+++|++|+|++|.+++++.
T Consensus 308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~ 379 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379 (844)
T ss_dssp TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC
Confidence 8899999999999999999888888899999999999999999887764 7888999999999998887653
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=260.49 Aligned_cols=255 Identities=18% Similarity=0.132 Sum_probs=183.3
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCC-ccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTI-SSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFL 190 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 190 (395)
.+++.|||++|.+.+ ..+..|.++++|++|++++|.+.+.+ |..|.++++|++|+|++|.+.+..|..|.++++|++|
T Consensus 24 ~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 478888888888876 34566788888888888888665555 6668888888888888888887778888888888888
Q ss_pred EeecCcCCCCCCch--hcc-CCCCeeeeccccCcccCC-ccccC-ccccEEEcccCCCCCCCchHHHhcC--CC------
Q 037101 191 DIRFNYFTGSVPPQ--IFT-QNLDFLFINNNGFMIKLP-DNIGS-THILFLTLANNKFIGPLPRSIFKAF--SE------ 257 (395)
Q Consensus 191 ~Ls~n~l~~~~p~~--~~~-~~L~~L~L~~n~l~~~~~-~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l--~~------ 257 (395)
+|++|.+++.+|.. +.. ++|++|++++|.+.+..+ ..++. ++|++|++++|.+.+..+..+.. + ++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L 181 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSL 181 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEEC
Confidence 88888887656554 222 778888888888776544 34555 77888888888777655554432 2 33
Q ss_pred ------------------------CcEEEccCCcCcccCchhhcC-----------------------------------
Q 037101 258 ------------------------LTEVLLVNNQLTGCLPYEIGY----------------------------------- 278 (395)
Q Consensus 258 ------------------------L~~L~l~~n~l~~~~~~~~~~----------------------------------- 278 (395)
|++|++++|.+++..+..+..
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 556666666554433322221
Q ss_pred ---CCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC-CCcCCCCCC
Q 037101 279 ---LKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP-LCRFLIEKG 354 (395)
Q Consensus 279 ---l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~ 354 (395)
.++|+.|++++|.+.+..+..+..+++|+.|+|++|++.+..+..|..+++|+.|++++|.++++.+ .+..+++|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 1467777777777776667777788888888888888877777778888888888888888877754 477888888
Q ss_pred EEEccCCCCCCCCC
Q 037101 355 VLDVRNNCIPDLPF 368 (395)
Q Consensus 355 ~L~L~~N~i~~lp~ 368 (395)
+|++++|.|+.++.
T Consensus 342 ~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 342 YIDLQKNHIAIIQD 355 (844)
T ss_dssp EEECCSCCCCCCCS
T ss_pred EEECCCCCCCccCh
Confidence 88888888877763
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=2.1e-28 Score=235.98 Aligned_cols=244 Identities=15% Similarity=0.140 Sum_probs=183.4
Q ss_pred ccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 037101 110 TAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEF 189 (395)
Q Consensus 110 ~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 189 (395)
...+++.|++++|.+.+ ..+..+..+++|++|++++|.++...+..|.++++|++|++++|.+++..+..+..+++|++
T Consensus 91 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 169 (390)
T 3o6n_A 91 YAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169 (390)
T ss_dssp TCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCE
T ss_pred CCCCcCEEECCCCCCCc-CCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCE
Confidence 34567777777777776 34555677777777777777777443344577777777777777777666666777777777
Q ss_pred EEeecCcCCCCCCchhccC-------------------CCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchH
Q 037101 190 LDIRFNYFTGSVPPQIFTQ-------------------NLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRS 250 (395)
Q Consensus 190 L~Ls~n~l~~~~p~~~~~~-------------------~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 250 (395)
|++++|+++ .++... .+ +|+.|++++|.+... +... .++|++|++++|.+.+ .+ .
T Consensus 170 L~l~~n~l~-~~~~~~-l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~-~~~~-~~~L~~L~l~~n~l~~-~~-~ 243 (390)
T 3o6n_A 170 LQLSSNRLT-HVDLSL-IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV-RGPV-NVELTILKLQHNNLTD-TA-W 243 (390)
T ss_dssp EECCSSCCS-BCCGGG-CTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEE-ECCC-CSSCCEEECCSSCCCC-CG-G
T ss_pred EECCCCcCC-cccccc-ccccceeecccccccccCCCCcceEEECCCCeeeec-cccc-cccccEEECCCCCCcc-cH-H
Confidence 777777776 333211 13 344444444444321 2111 1578899999998884 33 3
Q ss_pred HHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCC
Q 037101 251 IFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNL 330 (395)
Q Consensus 251 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 330 (395)
+..+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|..+..+++|++|++++|++. .+|..+..+++|
T Consensus 244 -l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L 320 (390)
T 3o6n_A 244 -LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 320 (390)
T ss_dssp -GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred -HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcC
Confidence 445899999999999999888999999999999999999999 46777788999999999999996 567778889999
Q ss_pred cEEEccCCcccccCCCCcCCCCCCEEEccCCCCCC
Q 037101 331 LHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 331 ~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~ 365 (395)
+.|++++|.++.++ +..+++|++|++++|+++.
T Consensus 321 ~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 321 ENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred CEEECCCCccceeC--chhhccCCEEEcCCCCccc
Confidence 99999999999874 7788999999999998875
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=3.7e-28 Score=247.31 Aligned_cols=115 Identities=13% Similarity=0.117 Sum_probs=79.0
Q ss_pred ccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 037101 110 TAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEF 189 (395)
Q Consensus 110 ~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 189 (395)
...+++.|++++|.+.+ ..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++
T Consensus 54 ~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 132 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132 (606)
T ss_dssp TCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred CCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence 34566777777776665 34555677777777777777777666777777777777777777777655566777777777
Q ss_pred EEeecCcCCC-CCCchhcc-CCCCeeeeccccCcccCC
Q 037101 190 LDIRFNYFTG-SVPPQIFT-QNLDFLFINNNGFMIKLP 225 (395)
Q Consensus 190 L~Ls~n~l~~-~~p~~~~~-~~L~~L~L~~n~l~~~~~ 225 (395)
|++++|.+++ .+|..+.. ++|++|++++|.+.+..+
T Consensus 133 L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp EECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred EeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 7777777764 45665554 778888888877665433
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=7.8e-28 Score=248.25 Aligned_cols=231 Identities=19% Similarity=0.150 Sum_probs=153.3
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLD 191 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 191 (395)
.+++.|++++|.+.+ ..+..|.++++|++|++++|.+++..|..++++++|++|++++|.+++..+..|.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 578899999998887 4556688888999999988888888888888888888898888888855555788888888888
Q ss_pred eecCcCCCCCCchhcc-CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHH-hcCCCCcEEEccCCcC
Q 037101 192 IRFNYFTGSVPPQIFT-QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIF-KAFSELTEVLLVNNQL 268 (395)
Q Consensus 192 Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~-~~l~~L~~L~l~~n~l 268 (395)
+++|++++..|..+.. ++|++|++++|.+.+..+..+.. ++|++|++++|.+.+..+..+. ..+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 8888887433343433 78888888888888777766665 7888888888887754444332 1246777777777777
Q ss_pred cccCchhhcCC---------------------------CCCcEEEccCCcccccCchhccCCCC--CCeeecccCcCCCC
Q 037101 269 TGCLPYEIGYL---------------------------KEAVVFDVGDNQLTGQLPFSLACLEK--VEQLNFANNLLFGM 319 (395)
Q Consensus 269 ~~~~~~~~~~l---------------------------~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~ 319 (395)
++..+..+..+ ++|+.|++++|.+++..|..+..++. |++|++++|.+.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 65555444322 23444444444444444444444332 44455554444444
Q ss_pred ChhhhcCCCCCcEEEccCCccccc
Q 037101 320 VPEAVCGLPNLLHFSLSDNYFTHA 343 (395)
Q Consensus 320 ~p~~~~~l~~L~~L~L~~N~l~~~ 343 (395)
.+..|..+++|++|++++|.+++.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEE
T ss_pred CcccccCcccccEeeCCCCccCcc
Confidence 444444444444444444444443
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=6.4e-29 Score=249.95 Aligned_cols=248 Identities=17% Similarity=0.195 Sum_probs=190.7
Q ss_pred EEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCc
Q 037101 117 IDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNY 196 (395)
Q Consensus 117 L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 196 (395)
.|.+++.++. +|..+ .++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++|+
T Consensus 10 c~~~~~~l~~--ip~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 10 CDGRSRSFTS--IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EECTTSCCSS--CCSCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcccc--ccccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 6888888886 44433 3799999999999998888899999999999999999998888899999999999999999
Q ss_pred CCCCCCchhcc-CCCCeeeeccccCcc-cCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCc
Q 037101 197 FTGSVPPQIFT-QNLDFLFINNNGFMI-KLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLP 273 (395)
Q Consensus 197 l~~~~p~~~~~-~~L~~L~L~~n~l~~-~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~ 273 (395)
+++..|..+.. ++|++|++++|.+.+ ..+..+.. ++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 99544443444 899999999999986 35566666 8999999999996667776555669999999999999998777
Q ss_pred hhhcC------------------------CCCCcEEEccCCccccc----------------------------------
Q 037101 274 YEIGY------------------------LKEAVVFDVGDNQLTGQ---------------------------------- 295 (395)
Q Consensus 274 ~~~~~------------------------l~~L~~L~Ls~n~l~~~---------------------------------- 295 (395)
..++. +++|++|++++|++++.
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence 66543 56677777777766542
Q ss_pred -------------------------------------------------------------------------------C
Q 037101 296 -------------------------------------------------------------------------------L 296 (395)
Q Consensus 296 -------------------------------------------------------------------------------~ 296 (395)
+
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i 325 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC
T ss_pred HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccC
Confidence 1
Q ss_pred chhc-cCCCCCCeeecccCcCCCCChh---hhcCCCCCcEEEccCCcccccCC---CCcCCCCCCEEEccCCCCCCCCC
Q 037101 297 PFSL-ACLEKVEQLNFANNLLFGMVPE---AVCGLPNLLHFSLSDNYFTHAGP---LCRFLIEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 297 p~~l-~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~~---~~~~l~~L~~L~L~~N~i~~lp~ 368 (395)
|..+ ..+++|++|++++|++.+.+|. .+..+++|+.|++++|+++++++ .+..+++|++|++++|+|+.+|.
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 404 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS
T ss_pred CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCCh
Confidence 1111 2356667777777777665432 25566777777777777766542 26677888888888888887774
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=4.5e-28 Score=250.04 Aligned_cols=272 Identities=16% Similarity=0.161 Sum_probs=203.1
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCC-c-cccCC--CCCCCEEEccCCCCCCCcchhhcCCCCC
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTI-S-SNIAK--LPYLYELDISNNKFSGPFPAAVLGMNNL 187 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p-~~~~~--l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 187 (395)
.+++.|++++|.+.+ ..+..|..+++|++|++++|.+.... + ..+.. .++|++|++++|++++..|..|..+++|
T Consensus 329 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp TTCCEEECCSCCBCC-CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCEEECCCCccCC-CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 345555555555555 23444555566666666555543221 1 11211 2456666677777777777888899999
Q ss_pred cEEEeecCcCCCCCCchhcc--CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCC--CCCchHHHhcCCCCcEEE
Q 037101 188 EFLDIRFNYFTGSVPPQIFT--QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFI--GPLPRSIFKAFSELTEVL 262 (395)
Q Consensus 188 ~~L~Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~--~~~p~~~~~~l~~L~~L~ 262 (395)
++|++++|.+++.+|...+. ++|++|++++|++.+..+..+.. ++|++|++++|.+. +.+|..+.. +++|++|+
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~-l~~L~~L~ 486 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP-LRNLTILD 486 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT-CTTCCEEE
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc-CCCCCEEE
Confidence 99999999998777754443 78999999999988777777766 88999999999876 456665544 89999999
Q ss_pred ccCCcCcccCchhhcCCCCCcEEEccCCcccccCc--------hhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEE
Q 037101 263 LVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLP--------FSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFS 334 (395)
Q Consensus 263 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 334 (395)
+++|++++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++|+++...+..|..+++|+.|+
T Consensus 487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence 99999997777789999999999999999985422 2378889999999999999765556799999999999
Q ss_pred ccCCcccccCCC-CcCCCCCCEEEccCCCCCCCCCCC-----CchhhhcccCCCCCC
Q 037101 335 LSDNYFTHAGPL-CRFLIEKGVLDVRNNCIPDLPFQR-----SVAECADFFAHPRFC 385 (395)
Q Consensus 335 L~~N~l~~~~~~-~~~l~~L~~L~L~~N~i~~lp~~~-----~~~~~~~~~~~~~~c 385 (395)
+++|+++++++. +..+++|+.|+|++|+|++++... ......++.+||+.|
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 999999998876 689999999999999999987431 223345667777544
No 40
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=3.1e-30 Score=241.41 Aligned_cols=244 Identities=18% Similarity=0.134 Sum_probs=202.4
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCC-CCCCccccC-------CCCCCCEEEccCCCCCCCcchhh--
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNF-AGTISSNIA-------KLPYLYELDISNNKFSGPFPAAV-- 181 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l-~~~~p~~~~-------~l~~L~~L~Ls~n~l~~~~p~~l-- 181 (395)
.+++.|++++|.+ . ++..+... |+.|++++|.+ ...+|..+. ++++|++|++++|++++.+|..+
T Consensus 43 ~~L~~l~l~~n~l-~--~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-A--DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT-C--CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc-c--cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 4678888999998 3 34434333 88999999998 445776665 79999999999999999999876
Q ss_pred cCCCCCcEEEeecCcCCCCCCchhcc------CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCC--chHH-
Q 037101 182 LGMNNLEFLDIRFNYFTGSVPPQIFT------QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPL--PRSI- 251 (395)
Q Consensus 182 ~~l~~L~~L~Ls~n~l~~~~p~~~~~------~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~--p~~~- 251 (395)
..+++|++|++++|++++. |..+.. ++|++|++++|++.+..+..++. ++|++|++++|++.+.+ +..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8999999999999999965 765543 79999999999999877788877 89999999999987552 3333
Q ss_pred HhcCCCCcEEEccCCcCcc--cC-chhhcCCCCCcEEEccCCcccccCc-hhccCCCCCCeeecccCcCCCCChhhhcCC
Q 037101 252 FKAFSELTEVLLVNNQLTG--CL-PYEIGYLKEAVVFDVGDNQLTGQLP-FSLACLEKVEQLNFANNLLFGMVPEAVCGL 327 (395)
Q Consensus 252 ~~~l~~L~~L~l~~n~l~~--~~-~~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 327 (395)
+..+++|++|++++|++++ .+ ...+..+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 2458999999999999983 22 2445688999999999999997664 45667899999999999996 6777666
Q ss_pred CCCcEEEccCCcccccCCCCcCCCCCCEEEccCCCCCC
Q 037101 328 PNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 328 ~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~ 365 (395)
++|+.|++++|++++.+ .+..+++|++|+|++|+|++
T Consensus 274 ~~L~~L~Ls~N~l~~~p-~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRNP-SPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSCCCSCC-CTTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCCCCCCh-hHhhCCCCCEEeccCCCCCC
Confidence 89999999999999984 48999999999999999986
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=4.8e-28 Score=246.22 Aligned_cols=242 Identities=15% Similarity=0.146 Sum_probs=166.5
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLD 191 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 191 (395)
.+++.|+|++|.+.+ ..+..|..+++|++|++++|.+++..+..|+.+++|++|+|++|.+++..|..|..+++|++|+
T Consensus 99 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 99 HTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCC-CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 355555555555555 3344455555555555555555543333345555555555555555555555555555555555
Q ss_pred eecCcCCCCCCchhccCCC-------------------CeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHH
Q 037101 192 IRFNYFTGSVPPQIFTQNL-------------------DFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIF 252 (395)
Q Consensus 192 Ls~n~l~~~~p~~~~~~~L-------------------~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 252 (395)
+++|.+++ ++... .++| +.|++++|.+... +..+ .++|++|++++|.+.+. .. +
T Consensus 178 L~~N~l~~-~~~~~-l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~-~~~~-~~~L~~L~L~~n~l~~~--~~-l 250 (597)
T 3oja_B 178 LSSNRLTH-VDLSL-IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV-RGPV-NVELTILKLQHNNLTDT--AW-L 250 (597)
T ss_dssp CTTSCCSB-CCGGG-CTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEE-ECSC-CSCCCEEECCSSCCCCC--GG-G
T ss_pred CcCCCCCC-cChhh-hhhhhhhhcccCccccccCCchhheeeccCCccccc-cccc-CCCCCEEECCCCCCCCC--hh-h
Confidence 55555552 22111 1222 3333333332211 1111 14688888888888752 33 3
Q ss_pred hcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcE
Q 037101 253 KAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLH 332 (395)
Q Consensus 253 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 332 (395)
..+++|++|++++|.+++..|..|+.+++|+.|+|++|.+++ +|..+..+++|++|+|++|.+. .+|..+..+++|+.
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~ 328 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCE
Confidence 448999999999999999999999999999999999999995 6777888999999999999996 57888899999999
Q ss_pred EEccCCcccccCCCCcCCCCCCEEEccCCCCCC
Q 037101 333 FSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 333 L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~ 365 (395)
|+|++|.+++.+ +..+++|+.|+|++|.++.
T Consensus 329 L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 329 LYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp EECCSSCCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred EECCCCCCCCcC--hhhcCCCCEEEeeCCCCCC
Confidence 999999998874 6788999999999999764
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.5e-27 Score=234.61 Aligned_cols=241 Identities=15% Similarity=0.157 Sum_probs=208.6
Q ss_pred cceeeeCCCCCC----CccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCC
Q 037101 97 YKGFYCESPPDN----ETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNK 172 (395)
Q Consensus 97 w~gv~c~~~~~~----~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 172 (395)
|..+.|....-. ....+++.|+|++|.+.+ ..+..|..+++|++|++++|.+.+..+..|.++++|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 567888652211 123589999999999998 456779999999999999999998888899999999999999999
Q ss_pred CCCCcchhhcCCCCCcEEEeecCcCCCCCCchhcc--CCCCeeeeccccCcccCCcc-ccC-ccccEEEcccCCCCCCCc
Q 037101 173 FSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT--QNLDFLFINNNGFMIKLPDN-IGS-THILFLTLANNKFIGPLP 248 (395)
Q Consensus 173 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~-~~~-~~L~~L~l~~n~l~~~~p 248 (395)
+++..+..|..+++|++|+|++|+++ .+|...+. ++|++|++++|...+.++.. +.. ++|++|++++|.+. .+|
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC
T ss_pred CCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc
Confidence 99777777999999999999999998 66665444 89999999996655566553 444 89999999999998 566
Q ss_pred hHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCC
Q 037101 249 RSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLP 328 (395)
Q Consensus 249 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 328 (395)
. +..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|+|++|++++..+..|..++
T Consensus 213 ~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 213 N--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 4 34489999999999999988899999999999999999999988899999999999999999999888788889999
Q ss_pred CCcEEEccCCcccc
Q 037101 329 NLLHFSLSDNYFTH 342 (395)
Q Consensus 329 ~L~~L~L~~N~l~~ 342 (395)
+|+.|+|++|.+.-
T Consensus 291 ~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 291 YLVELHLHHNPWNC 304 (452)
T ss_dssp TCCEEECCSSCEEC
T ss_pred CCCEEEccCCCcCC
Confidence 99999999998754
No 43
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.7e-27 Score=218.12 Aligned_cols=217 Identities=22% Similarity=0.264 Sum_probs=134.6
Q ss_pred CCCCCcceeeeCCCCCCCccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCC
Q 037101 92 SDICNYKGFYCESPPDNETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNN 171 (395)
Q Consensus 92 ~~~C~w~gv~c~~~~~~~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n 171 (395)
.+.|.|.|+.|.... .++.++++++.+.. ++..+. +++++|++++|.+++..+..|.++++|++|++++|
T Consensus 2 ~~~C~~~~~~C~c~~------~~~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 71 (270)
T 2o6q_A 2 EALCKKDGGVCSCNN------NKNSVDCSSKKLTA--IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71 (270)
T ss_dssp CCCBGGGTCSBEEET------TTTEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS
T ss_pred CccCCCCCCCCEeCC------CCCEEEccCCCCCc--cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC
Confidence 378999999997532 45678888888876 333232 56788888888877666667777888888888888
Q ss_pred CCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchH
Q 037101 172 KFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRS 250 (395)
Q Consensus 172 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~ 250 (395)
.++...+..|.++++|++|++++|+++ .+|...+ .. ++|++|++++|.+. .++..
T Consensus 72 ~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~----------------------~~l~~L~~L~l~~n~l~-~~~~~ 127 (270)
T 2o6q_A 72 KLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVF----------------------DQLVNLAELRLDRNQLK-SLPPR 127 (270)
T ss_dssp CCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTT----------------------TTCSSCCEEECCSSCCC-CCCTT
T ss_pred ccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHc----------------------ccccCCCEEECCCCccC-eeCHH
Confidence 877555555677777888887777776 3333211 11 24444444444444 23333
Q ss_pred HHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCC
Q 037101 251 IFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNL 330 (395)
Q Consensus 251 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 330 (395)
.+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|
T Consensus 128 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 128 VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 33335666666666666664444445666666666666666664444455566666666666666655444455556666
Q ss_pred cEEEccCCcccc
Q 037101 331 LHFSLSDNYFTH 342 (395)
Q Consensus 331 ~~L~L~~N~l~~ 342 (395)
+.|++++|.+..
T Consensus 208 ~~L~l~~N~~~c 219 (270)
T 2o6q_A 208 KMLQLQENPWDC 219 (270)
T ss_dssp CEEECCSSCBCC
T ss_pred CEEEecCCCeeC
Confidence 666666665543
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.8e-27 Score=240.26 Aligned_cols=248 Identities=17% Similarity=0.137 Sum_probs=200.6
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLD 191 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 191 (395)
.+++.|++++|.+.+ ..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 589999999999998 45678999999999999999999888999999999999999999999 67776 899999999
Q ss_pred eecCcCCC-CCCchhcc-CCCCeeeeccccCcccCCccccCccc--cEEEcccCCC--CCCCchHHHh------------
Q 037101 192 IRFNYFTG-SVPPQIFT-QNLDFLFINNNGFMIKLPDNIGSTHI--LFLTLANNKF--IGPLPRSIFK------------ 253 (395)
Q Consensus 192 Ls~n~l~~-~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L--~~L~l~~n~l--~~~~p~~~~~------------ 253 (395)
+++|++++ .+|..+.. ++|++|++++|.+.+.....+ ++| ++|++++|.+ .+..|..+..
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l--~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV--AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGG--TTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccCchhhh--hhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 99999984 23455544 899999999999875322222 455 9999999988 4433322111
Q ss_pred --------------------------------------------------------------------cCCCCcEEEccC
Q 037101 254 --------------------------------------------------------------------AFSELTEVLLVN 265 (395)
Q Consensus 254 --------------------------------------------------------------------~l~~L~~L~l~~ 265 (395)
...+|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 012788888888
Q ss_pred CcCcccCchhh-----------------------------------------------------cCCCCCcEEEccCCcc
Q 037101 266 NQLTGCLPYEI-----------------------------------------------------GYLKEAVVFDVGDNQL 292 (395)
Q Consensus 266 n~l~~~~~~~~-----------------------------------------------------~~l~~L~~L~Ls~n~l 292 (395)
|.+++.+|..+ ..+++|++|++++|++
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence 88887776654 5678899999999999
Q ss_pred cccCchhccCCCCCCeeecccCcCCCC--ChhhhcCCCCCcEEEccCCcccc-cCCC-CcCCCCCCEEEccCCCCCC
Q 037101 293 TGQLPFSLACLEKVEQLNFANNLLFGM--VPEAVCGLPNLLHFSLSDNYFTH-AGPL-CRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 293 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~-~~~~-~~~l~~L~~L~L~~N~i~~ 365 (395)
++..|..+..+++|++|++++|++++. +|..+..+++|+.|++++|.+++ ++.. +..+++|++|++++|+|++
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 987888888999999999999998763 35668888999999999999988 5443 7788899999999999875
No 45
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=7.9e-27 Score=221.22 Aligned_cols=242 Identities=19% Similarity=0.276 Sum_probs=200.2
Q ss_pred CccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 037101 109 ETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLE 188 (395)
Q Consensus 109 ~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 188 (395)
....+++.|++++|.+.+ ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.....++. +..+++|+
T Consensus 85 ~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~ 158 (347)
T 4fmz_A 85 SNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLN 158 (347)
T ss_dssp TTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCC
T ss_pred hcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc-hhhCCCCc
Confidence 445689999999999987 33 589999999999999999854 33 88999999999999976645554 89999999
Q ss_pred EEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcC
Q 037101 189 FLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQL 268 (395)
Q Consensus 189 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l 268 (395)
+|++++|.+. .++.....++|++|++++|.+.+ ++.....++|++|++++|.+.+ ++. +..+++|++|++++|.+
T Consensus 159 ~L~l~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 159 YLTVTESKVK-DVTPIANLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAYVNQITD-ITP--VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp EEECCSSCCC-CCGGGGGCTTCSEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCC
T ss_pred EEEecCCCcC-CchhhccCCCCCEEEccCCcccc-cccccCCCccceeecccCCCCC-Cch--hhcCCcCCEEEccCCcc
Confidence 9999999998 55554444899999999999874 3432223899999999999884 433 44589999999999999
Q ss_pred cccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-C
Q 037101 269 TGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-C 347 (395)
Q Consensus 269 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~ 347 (395)
++..+ +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+. +
T Consensus 234 ~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 234 TDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred CCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence 85443 8889999999999999985 3 4688899999999999999764 4588899999999999999887664 7
Q ss_pred cCCCCCCEEEccCCCCCCCC
Q 037101 348 RFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 348 ~~l~~L~~L~L~~N~i~~lp 367 (395)
..+++|++|++++|++++++
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCG
T ss_pred hccccCCEEEccCCcccccc
Confidence 88999999999999999876
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.4e-27 Score=231.19 Aligned_cols=240 Identities=16% Similarity=0.192 Sum_probs=207.8
Q ss_pred cceeeeCCCCC----CCccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCC
Q 037101 97 YKGFYCESPPD----NETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNK 172 (395)
Q Consensus 97 w~gv~c~~~~~----~~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 172 (395)
|..+.|....- ......++.|+|++|++.+ ..+..|.++++|++|++++|.+.+..+..|.++++|++|+|++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 56788865211 1123578999999999988 455779999999999999999998888899999999999999999
Q ss_pred CCCCcchhhcCCCCCcEEEeecCcCCCCCCchhcc--CCCCeeeeccccCcccCCc-cccC-ccccEEEcccCCCCCCCc
Q 037101 173 FSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT--QNLDFLFINNNGFMIKLPD-NIGS-THILFLTLANNKFIGPLP 248 (395)
Q Consensus 173 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~-~~~~-~~L~~L~l~~n~l~~~~p 248 (395)
++...+..|..+++|++|+|++|+++ .++...+. ++|++|++++|...+.++. .+.. ++|++|++++|.+. .+|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred CCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 99777778999999999999999998 66654444 8999999999665555555 4444 89999999999998 777
Q ss_pred hHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCC
Q 037101 249 RSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLP 328 (395)
Q Consensus 249 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 328 (395)
. +..+++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..++
T Consensus 202 ~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 202 N--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 4 34589999999999999988899999999999999999999988889999999999999999999988888899999
Q ss_pred CCcEEEccCCccc
Q 037101 329 NLLHFSLSDNYFT 341 (395)
Q Consensus 329 ~L~~L~L~~N~l~ 341 (395)
+|+.|+|++|.+.
T Consensus 280 ~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 280 HLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEcCCCCcc
Confidence 9999999999875
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.8e-28 Score=228.59 Aligned_cols=239 Identities=16% Similarity=0.111 Sum_probs=195.8
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
++...+++.+.+.. .+...+..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHH-HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhh-hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 56777777777765 344556677899999999999998878889999999999999999986554 889999999999
Q ss_pred ecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccC
Q 037101 193 RFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCL 272 (395)
Q Consensus 193 s~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~ 272 (395)
++|+++ .++. .++|++|++++|.+.+..+.. .++|++|++++|++.+..+.. +..+++|++|++++|.+++..
T Consensus 88 s~n~l~-~l~~---~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 88 NNNYVQ-ELLV---GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp CSSEEE-EEEE---CTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBC-TGGGSSEEEEECTTSCCCEEE
T ss_pred cCCccc-cccC---CCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchh-hhccCCCCEEECCCCCCCccc
Confidence 999988 4442 278999999999988654443 257999999999998443434 444889999999999999777
Q ss_pred chhh-cCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcCCC
Q 037101 273 PYEI-GYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLI 351 (395)
Q Consensus 273 ~~~~-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~ 351 (395)
+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|++++. |..+..+++|+.|++++|.+++++..+..++
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~ 237 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred HHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhHhhcCC
Confidence 7666 4789999999999999854 43 33588999999999999765 4458889999999999999998887888999
Q ss_pred CCCEEEccCCCCC
Q 037101 352 EKGVLDVRNNCIP 364 (395)
Q Consensus 352 ~L~~L~L~~N~i~ 364 (395)
+|+.|++++|.+.
T Consensus 238 ~L~~L~l~~N~~~ 250 (317)
T 3o53_A 238 NLEHFDLRGNGFH 250 (317)
T ss_dssp TCCEEECTTCCCB
T ss_pred CCCEEEccCCCcc
Confidence 9999999999998
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1e-27 Score=223.55 Aligned_cols=245 Identities=20% Similarity=0.306 Sum_probs=210.1
Q ss_pred CCcceeeeCCCCC----CCccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCC--CccccCCCCCCCEEEc
Q 037101 95 CNYKGFYCESPPD----NETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGT--ISSNIAKLPYLYELDI 168 (395)
Q Consensus 95 C~w~gv~c~~~~~----~~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~L 168 (395)
|.|.++.|....- .....+++.|++++|.+.. .....|..+++|++|++++|.++.. .+..+..+++|++|++
T Consensus 7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 7899999976221 1223589999999999986 4556689999999999999999743 3667778999999999
Q ss_pred cCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCc--hhc-cCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCC
Q 037101 169 SNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPP--QIF-TQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFI 244 (395)
Q Consensus 169 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~-~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~ 244 (395)
++|.++ .+|..+..+++|++|++++|+++ .++. .+. .++|++|++++|.+.+..+..+.. ++|++|++++|.+.
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 999999 67778999999999999999998 4443 222 289999999999999888887776 89999999999998
Q ss_pred C-CCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhh
Q 037101 245 G-PLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEA 323 (395)
Q Consensus 245 ~-~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 323 (395)
+ .+|..+ ..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|..
T Consensus 164 ~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 164 ENFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGEECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred cccchhHH-hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 6 355544 44899999999999999888899999999999999999999777778999999999999999999999999
Q ss_pred hcCCC-CCcEEEccCCccccc
Q 037101 324 VCGLP-NLLHFSLSDNYFTHA 343 (395)
Q Consensus 324 ~~~l~-~L~~L~L~~N~l~~~ 343 (395)
+..++ +|+.|++++|.++..
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECS
T ss_pred HHhhhccCCEEEccCCCeecc
Confidence 99885 999999999999875
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.1e-26 Score=214.43 Aligned_cols=223 Identities=20% Similarity=0.216 Sum_probs=163.0
Q ss_pred EEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeec
Q 037101 115 ASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRF 194 (395)
Q Consensus 115 ~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 194 (395)
+.++.+++.+.. ++. ...++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~~--ip~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA--VPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS--CCT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc--CCc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 566777777765 332 2346888999999988877777788889999999999988877788888889999999998
Q ss_pred Cc-CCCCC-Cchhcc-CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcc
Q 037101 195 NY-FTGSV-PPQIFT-QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTG 270 (395)
Q Consensus 195 n~-l~~~~-p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~ 270 (395)
|. +. .+ |..+.. ++|++|++++|.+.+..+..+.. ++|++|++++|.+. .++...+..+++|++|++++|++++
T Consensus 90 n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 90 NAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccc
Confidence 87 66 45 333332 67788888877777655665555 67777777777776 4444444447777777777777775
Q ss_pred cCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCccccc
Q 037101 271 CLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHA 343 (395)
Q Consensus 271 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 343 (395)
..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+...
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 5555677777777777777777766677777777777777777777766666677777777777777777643
No 50
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=9.4e-27 Score=235.02 Aligned_cols=274 Identities=19% Similarity=0.201 Sum_probs=181.7
Q ss_pred CccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCC-CcchhhcCCCCC
Q 037101 109 ETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSG-PFPAAVLGMNNL 187 (395)
Q Consensus 109 ~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L 187 (395)
....+++.|++++|.+.+ ..+..|.++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..|.++++|
T Consensus 73 ~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 151 (570)
T 2z63_A 73 QSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (570)
T ss_dssp TTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred cCchhCCEEeCcCCcCCc-cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCC
Confidence 345689999999998887 355678899999999999999887666568999999999999999986 478899999999
Q ss_pred cEEEeecCcCCCCCCchhcc------------------------------------------------------------
Q 037101 188 EFLDIRFNYFTGSVPPQIFT------------------------------------------------------------ 207 (395)
Q Consensus 188 ~~L~Ls~n~l~~~~p~~~~~------------------------------------------------------------ 207 (395)
++|++++|.+++..+..+..
T Consensus 152 ~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~ 231 (570)
T 2z63_A 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231 (570)
T ss_dssp CEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEE
T ss_pred CEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceee
Confidence 99999999876432221110
Q ss_pred --------------------------------------------------CCCCeeeeccccCcccCCcccc--------
Q 037101 208 --------------------------------------------------QNLDFLFINNNGFMIKLPDNIG-------- 229 (395)
Q Consensus 208 --------------------------------------------------~~L~~L~L~~n~l~~~~~~~~~-------- 229 (395)
++|+.|++++|.+. .+|..+.
T Consensus 232 l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~ 310 (570)
T 2z63_A 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLE 310 (570)
T ss_dssp EEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEE
T ss_pred eccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEe
Confidence 22333333333332 1221111
Q ss_pred ----------------------------------C-ccccEEEcccCCCCCCC--chHHHhcCCCCcEEEccCCcCc---
Q 037101 230 ----------------------------------S-THILFLTLANNKFIGPL--PRSIFKAFSELTEVLLVNNQLT--- 269 (395)
Q Consensus 230 ----------------------------------~-~~L~~L~l~~n~l~~~~--p~~~~~~l~~L~~L~l~~n~l~--- 269 (395)
. ++|++|++++|.+.+.. +..+.. +++|++|++++|.+.
T Consensus 311 l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~ 389 (570)
T 2z63_A 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMS 389 (570)
T ss_dssp EESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHT-CSCCCEEECCSCSEEEEE
T ss_pred eccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccc-cCccCEEECCCCcccccc
Confidence 1 34555555555554221 333332 555555555555443
Q ss_pred --------------------ccCc-hhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCC-CCChhhhcCC
Q 037101 270 --------------------GCLP-YEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLF-GMVPEAVCGL 327 (395)
Q Consensus 270 --------------------~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l 327 (395)
+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+
T Consensus 390 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l 469 (570)
T 2z63_A 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469 (570)
T ss_dssp EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred ccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence 2222 23455666666666666666666666777777777777777775 4567777788
Q ss_pred CCCcEEEccCCcccccCC-CCcCCCCCCEEEccCCCCCCCCCCC----CchhhhcccCCCCCC
Q 037101 328 PNLLHFSLSDNYFTHAGP-LCRFLIEKGVLDVRNNCIPDLPFQR----SVAECADFFAHPRFC 385 (395)
Q Consensus 328 ~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~i~~lp~~~----~~~~~~~~~~~~~~c 385 (395)
++|+.|++++|.+++..+ .+..+++|++|++++|+++++|... ......++.+++..|
T Consensus 470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 888888888888888755 4778888888888888888876432 223344566666544
No 51
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=5.9e-26 Score=215.17 Aligned_cols=240 Identities=20% Similarity=0.278 Sum_probs=190.8
Q ss_pred CccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 037101 109 ETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLE 188 (395)
Q Consensus 109 ~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 188 (395)
....+++.|++++|.+.+ ++. +..+++|++|++++|.++. + +.+..+++|++|++++|.+++. +. +..+++|+
T Consensus 63 ~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~ 135 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMY 135 (347)
T ss_dssp GGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCC
T ss_pred hhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCcee
Confidence 345588889999888886 333 8888899999999888875 3 3588888999999999988844 43 88889999
Q ss_pred EEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCc
Q 037101 189 FLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQ 267 (395)
Q Consensus 189 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~ 267 (395)
+|++++|.....++.....++|++|++++|.+.+..+ +.. ++|++|++++|.+. .++. +..+++|++|++++|.
T Consensus 136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp EEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSSC
T ss_pred EEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccCC
Confidence 9999988666566554444889999999988874433 333 78999999999887 4554 4458899999999998
Q ss_pred CcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCC
Q 037101 268 LTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLC 347 (395)
Q Consensus 268 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 347 (395)
+.+..+ +..+++|++|++++|++++. +. +..+++|++|++++|.+++. ..+..+++|+.|++++|.++++ +.+
T Consensus 211 l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~ 283 (347)
T 4fmz_A 211 ITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVL 283 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGG
T ss_pred CCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhh
Confidence 885544 78889999999999999854 43 88899999999999998664 4688899999999999999886 457
Q ss_pred cCCCCCCEEEccCCCCCCCC
Q 037101 348 RFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 348 ~~l~~L~~L~L~~N~i~~lp 367 (395)
..+++|++|++++|.+++.+
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGG
T ss_pred cCCCCCCEEECcCCcCCCcC
Confidence 88899999999999988754
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.5e-27 Score=225.42 Aligned_cols=263 Identities=16% Similarity=0.175 Sum_probs=212.1
Q ss_pred EEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCc
Q 037101 117 IDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNY 196 (395)
Q Consensus 117 L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 196 (395)
.+.+++.++. +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|+
T Consensus 36 c~~~~~~l~~--iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSGSLNS--IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EECCSTTCSS--CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCCCccc--cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 7999999887 444333 589999999999997777789999999999999999998778889999999999999999
Q ss_pred CCCCCCchhcc--CCCCeeeeccccCcccCCc--cccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCccc
Q 037101 197 FTGSVPPQIFT--QNLDFLFINNNGFMIKLPD--NIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGC 271 (395)
Q Consensus 197 l~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~--~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~ 271 (395)
++ .+|...+. ++|++|++++|.+.. ++. .+.. ++|++|++++|...+.++...+..+++|++|++++|.+++.
T Consensus 112 l~-~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp CS-SCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CC-cCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 99 67766433 899999999999984 554 5555 89999999999533356554455689999999999999988
Q ss_pred CchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhc---CCCCCcEEEccCCccccc-----
Q 037101 272 LPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVC---GLPNLLHFSLSDNYFTHA----- 343 (395)
Q Consensus 272 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~----- 343 (395)
.|..+..+++|++|++++|+++......+..+++|++|++++|.+++..+..+. ....++.++++++.+++.
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 899999999999999999999844333455689999999999999876554433 457888999999988763
Q ss_pred CCCCcCCCCCCEEEccCCCCCCCCCCC----CchhhhcccCCCCCC
Q 037101 344 GPLCRFLIEKGVLDVRNNCIPDLPFQR----SVAECADFFAHPRFC 385 (395)
Q Consensus 344 ~~~~~~l~~L~~L~L~~N~i~~lp~~~----~~~~~~~~~~~~~~c 385 (395)
+..+..+++|++|+|++|+|+.+|... ......++.+|+..|
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 345788999999999999999998542 122334566666554
No 53
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.2e-27 Score=235.27 Aligned_cols=218 Identities=17% Similarity=0.117 Sum_probs=182.1
Q ss_pred CCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeee
Q 037101 135 QLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLF 214 (395)
Q Consensus 135 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~ 214 (395)
.+++|++|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.++ .+|.. ++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~~---~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVG---PSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEEC---TTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCCC---CCcCEEE
Confidence 34489999999999988888889999999999999999986655 888999999999999988 44432 7899999
Q ss_pred eccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhc-CCCCCcEEEccCCccc
Q 037101 215 INNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIG-YLKEAVVFDVGDNQLT 293 (395)
Q Consensus 215 L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~ 293 (395)
+++|.+.+..+..+ ++|++|++++|.+.+..|..+. .+++|++|++++|.+++..|..+. .+++|++|+|++|.++
T Consensus 106 L~~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 99999886555432 6899999999999865565544 488999999999999988887776 7899999999999998
Q ss_pred ccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcCCCCCCEEEccCCCCC
Q 037101 294 GQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIP 364 (395)
Q Consensus 294 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~ 364 (395)
+. |. +..+++|++|+|++|.+++..| .+..+++|+.|+|++|.++++++.+..+++|+.|++++|.+.
T Consensus 183 ~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 183 DV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred cc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 55 33 3468899999999999977544 488899999999999999998888888999999999999988
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.2e-26 Score=214.08 Aligned_cols=222 Identities=15% Similarity=0.109 Sum_probs=192.6
Q ss_pred cEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhcc-CCCCeeeeccc
Q 037101 140 ALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT-QNLDFLFINNN 218 (395)
Q Consensus 140 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n 218 (395)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.. ++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67888888887 456543 479999999999999777788999999999999999998555655544 89999999999
Q ss_pred c-CcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccC
Q 037101 219 G-FMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQL 296 (395)
Q Consensus 219 ~-l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 296 (395)
. +....+..+.. ++|++|++++|.+.+..+. .+..+++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 8 66555677766 8999999999999954444 4455899999999999999777777899999999999999999766
Q ss_pred chhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-CcCCCCCCEEEccCCCCCC
Q 037101 297 PFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 297 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~i~~ 365 (395)
+..+..+++|++|++++|.+++..|..|..+++|+.|++++|.++++++. +..+++|++|+|++|.+..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 67799999999999999999998899999999999999999999998765 8899999999999999875
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=9.1e-26 Score=222.69 Aligned_cols=82 Identities=23% Similarity=0.320 Sum_probs=58.3
Q ss_pred ccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 037101 110 TAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEF 189 (395)
Q Consensus 110 ~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 189 (395)
...+++.|++++|.+.+ ++. +..+++|++|++++|.+.+..+ +.++++|++|++++|.+++. +. +.++++|++
T Consensus 66 ~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~ 138 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNR 138 (466)
T ss_dssp GCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSE
T ss_pred hhcCCCEEECCCCccCC--chh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCE
Confidence 34578888888888776 233 7778888888888887775443 77778888888888777744 32 667777777
Q ss_pred EEeecCcCC
Q 037101 190 LDIRFNYFT 198 (395)
Q Consensus 190 L~Ls~n~l~ 198 (395)
|++++|.+.
T Consensus 139 L~l~~n~l~ 147 (466)
T 1o6v_A 139 LELSSNTIS 147 (466)
T ss_dssp EEEEEEEEC
T ss_pred EECCCCccC
Confidence 777777665
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=8.1e-28 Score=224.96 Aligned_cols=225 Identities=18% Similarity=0.179 Sum_probs=189.0
Q ss_pred cEEEEEcCCCCcCCCCcccccC-------CCCCCcEEECCCCCCCCCCcccc--CCCCCCCEEEccCCCCCCCcchhhcC
Q 037101 113 AVASIDFNGFQLSAPTLDGFLD-------QLPDIALFHANSNNFAGTISSNI--AKLPYLYELDISNNKFSGPFPAAVLG 183 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~-------~l~~L~~L~l~~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p~~l~~ 183 (395)
.++.|++++|.+.....+..+. .+++|++|++++|.+++.+|..+ ..+++|++|++++|++++. |..+..
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 142 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE 142 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence 4788899999885433444444 78999999999999999999886 8999999999999999977 888887
Q ss_pred C-----CCCcEEEeecCcCCCCCCchhcc-CCCCeeeeccccCccc--CCccc--cC-ccccEEEcccCCCCC--CCchH
Q 037101 184 M-----NNLEFLDIRFNYFTGSVPPQIFT-QNLDFLFINNNGFMIK--LPDNI--GS-THILFLTLANNKFIG--PLPRS 250 (395)
Q Consensus 184 l-----~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~--~~~~~--~~-~~L~~L~l~~n~l~~--~~p~~ 250 (395)
+ ++|++|++++|++++..|..+.. ++|++|++++|++.+. ++..+ .. ++|++|++++|++.+ .++..
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 7 99999999999999555455544 8999999999998765 23333 33 899999999999983 34556
Q ss_pred HHhcCCCCcEEEccCCcCcccCc-hhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCC
Q 037101 251 IFKAFSELTEVLLVNNQLTGCLP-YEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPN 329 (395)
Q Consensus 251 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 329 (395)
++..+++|++|++++|++++..| ..+..+++|++|+|++|+++ .+|..+. ++|++|++++|++++. |. +..+++
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~ 297 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ 297 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence 66668999999999999998775 45677899999999999999 7888776 8999999999999776 66 899999
Q ss_pred CcEEEccCCccccc
Q 037101 330 LLHFSLSDNYFTHA 343 (395)
Q Consensus 330 L~~L~L~~N~l~~~ 343 (395)
|+.|++++|.+++.
T Consensus 298 L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 298 VGNLSLKGNPFLDS 311 (312)
T ss_dssp EEEEECTTCTTTCC
T ss_pred CCEEeccCCCCCCC
Confidence 99999999999864
No 57
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.9e-25 Score=220.39 Aligned_cols=236 Identities=24% Similarity=0.337 Sum_probs=139.1
Q ss_pred cccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 037101 111 AIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFL 190 (395)
Q Consensus 111 ~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 190 (395)
..+++.|++++|.+.+ .+. +..+++|++|++++|.+++. +. +.++++|++|++++|.+.+ ++ .+..+++|++|
T Consensus 89 l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L 161 (466)
T 1o6v_A 89 LTKLVDILMNNNQIAD--ITP-LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQL 161 (466)
T ss_dssp CTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEE
T ss_pred cccCCEEECCCCcccc--Chh-hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEe
Confidence 3455566666665554 222 55556666666666555533 21 5555666666666665553 22 25555666666
Q ss_pred EeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCc
Q 037101 191 DIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLT 269 (395)
Q Consensus 191 ~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~ 269 (395)
+++ |.+. .++.....++|++|++++|.+.. ++. +.. ++|++|++++|.+.+..+ +..+++|++|++++|+++
T Consensus 162 ~l~-~~~~-~~~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 162 SFG-NQVT-DLKPLANLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp EEE-ESCC-CCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCC
T ss_pred ecC-Cccc-CchhhccCCCCCEEECcCCcCCC-Chh-hccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcc
Confidence 654 3333 22222222556666666665542 222 222 566666666666664333 223666777777766666
Q ss_pred ccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcC
Q 037101 270 GCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRF 349 (395)
Q Consensus 270 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 349 (395)
+. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++.++ +..
T Consensus 235 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~ 307 (466)
T 1o6v_A 235 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISN 307 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGG
T ss_pred cc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcC
Confidence 32 346667777777777777764433 6677777777777777755433 6677777777777777776554 667
Q ss_pred CCCCCEEEccCCCCCCCC
Q 037101 350 LIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 350 l~~L~~L~L~~N~i~~lp 367 (395)
+++|++|++++|++++++
T Consensus 308 l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp CTTCSEEECCSSCCSCCG
T ss_pred CCCCCEEECcCCcCCCch
Confidence 777788888888777755
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=233.77 Aligned_cols=246 Identities=17% Similarity=0.182 Sum_probs=207.7
Q ss_pred cccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 037101 111 AIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFL 190 (395)
Q Consensus 111 ~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 190 (395)
..+++.|+++++.+.+ ++..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|
T Consensus 281 l~~L~~L~l~~~~l~~--l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L 352 (570)
T 2z63_A 281 LTNVSSFSLVSVTIER--VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFL 352 (570)
T ss_dssp GTTCSEEEEESCEECS--CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEE
T ss_pred cCcccEEEecCccchh--hhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEE
Confidence 4577888888887775 55566777 8888888888877 5554 4678888888888888766554 678999999
Q ss_pred EeecCcCCCCC--Cchhcc-CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCC
Q 037101 191 DIRFNYFTGSV--PPQIFT-QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNN 266 (395)
Q Consensus 191 ~Ls~n~l~~~~--p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n 266 (395)
++++|.+++.. |..+.. ++|++|++++|.+.+..+. +.. ++|++|++++|.+.+..+...+..+++|++|++++|
T Consensus 353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 431 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431 (570)
T ss_dssp ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred eCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence 99999987432 343433 8999999999998855444 555 899999999999986666455566899999999999
Q ss_pred cCcccCchhhcCCCCCcEEEccCCccc-ccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC
Q 037101 267 QLTGCLPYEIGYLKEAVVFDVGDNQLT-GQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP 345 (395)
Q Consensus 267 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 345 (395)
.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..|..+++|+.|++++|++++.++
T Consensus 432 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence 999889999999999999999999998 5789999999999999999999999889999999999999999999999877
Q ss_pred C-CcCCCCCCEEEccCCCCCC
Q 037101 346 L-CRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 346 ~-~~~l~~L~~L~L~~N~i~~ 365 (395)
. +..+++|++|++++|.++.
T Consensus 512 ~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 512 GIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTTTTCTTCCEEECCSSCBCC
T ss_pred HHhhcccCCcEEEecCCcccC
Confidence 5 7899999999999999987
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1.3e-25 Score=228.98 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=101.1
Q ss_pred cCCCCcEEEccCCcCc-ccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcE
Q 037101 254 AFSELTEVLLVNNQLT-GCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLH 332 (395)
Q Consensus 254 ~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 332 (395)
.++.+++|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence 3568889999999754 457888999999999999999999888999999999999999999999988889999999999
Q ss_pred EEccCCcccccCCC-CcCC-CCCCEEEccCCCCCC
Q 037101 333 FSLSDNYFTHAGPL-CRFL-IEKGVLDVRNNCIPD 365 (395)
Q Consensus 333 L~L~~N~l~~~~~~-~~~l-~~L~~L~L~~N~i~~ 365 (395)
|+|++|+|+++++. +..+ ++|++|+|++|++.-
T Consensus 547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp EECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred EECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999999998775 7777 689999999998874
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1e-27 Score=224.81 Aligned_cols=236 Identities=19% Similarity=0.157 Sum_probs=199.6
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLD 191 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 191 (395)
.+++.|++++|.+.+ ..+..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ ..++|++|+
T Consensus 34 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred CCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEE
Confidence 389999999999998 466789999999999999999986654 8999999999999999984 33 348999999
Q ss_pred eecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcc
Q 037101 192 IRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTG 270 (395)
Q Consensus 192 Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~ 270 (395)
+++|++++ ++... .++|++|++++|.+.+..+..+.. ++|++|++++|.+.+..+..++..+++|++|++++|.+++
T Consensus 106 l~~n~l~~-~~~~~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 106 AANNNISR-VSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CCSSCCSE-EEECC-CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCccCC-cCccc-cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 99999984 44332 378999999999999777767766 8999999999999966666666568999999999999985
Q ss_pred cCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCccc-ccCC-CCc
Q 037101 271 CLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFT-HAGP-LCR 348 (395)
Q Consensus 271 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~~-~~~ 348 (395)
. +. ...+++|++|++++|++++ +|..+..+++|++|++++|++++ +|..+..+++|+.|++++|.++ +..+ .+.
T Consensus 184 ~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 184 V-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp E-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred c-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 5 33 3458999999999999995 55568899999999999999964 6788999999999999999998 4333 477
Q ss_pred CCCCCCEEEccCC
Q 037101 349 FLIEKGVLDVRNN 361 (395)
Q Consensus 349 ~l~~L~~L~L~~N 361 (395)
.+++|+.|+++++
T Consensus 260 ~~~~L~~l~l~~~ 272 (317)
T 3o53_A 260 KNQRVQTVAKQTV 272 (317)
T ss_dssp TCHHHHHHHHHHH
T ss_pred ccccceEEECCCc
Confidence 8888999988843
No 61
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.8e-25 Score=219.68 Aligned_cols=184 Identities=20% Similarity=0.214 Sum_probs=85.8
Q ss_pred cccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 037101 111 AIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFL 190 (395)
Q Consensus 111 ~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 190 (395)
..+++.|++++|.+.+ ++ +..+++|++|++++|.+++. + ++++++|++|++++|++++ ++ +..+++|++|
T Consensus 63 l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L 132 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL 132 (457)
T ss_dssp CTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence 3455555666555555 11 45555555555555555542 2 5555555555555555553 22 5555555555
Q ss_pred EeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCc
Q 037101 191 DIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLT 269 (395)
Q Consensus 191 ~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~ 269 (395)
++++|++++ ++ ....++|++|++++|...+.++ +.. ++|++|++++|++.+ +| +..+++|++|++++|+++
T Consensus 133 ~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 133 NCARNTLTE-ID-VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp ECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCS
T ss_pred ECCCCccce-ec-cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCC
Confidence 555555553 32 1112444455554443333331 222 444555555554442 33 122444444444444444
Q ss_pred ccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCC
Q 037101 270 GCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFG 318 (395)
Q Consensus 270 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 318 (395)
+. .++.+++|++|++++|++++ +| +..+++|++|++++|++++
T Consensus 205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 205 KL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred ee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 32 13444444444444444443 23 3344444444444444433
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4e-27 Score=233.45 Aligned_cols=234 Identities=19% Similarity=0.156 Sum_probs=200.1
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLD 191 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 191 (395)
.+|+.|+|++|.+.+ ..+..|..+++|++|++++|.+++..| +..+++|++|+|++|.+++. | ..++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence 489999999999998 466789999999999999999987665 89999999999999999843 3 248999999
Q ss_pred eecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcc
Q 037101 192 IRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTG 270 (395)
Q Consensus 192 Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~ 270 (395)
+++|.+++ ++.. ..++|+.|++++|.+.+..|..++. ++|++|++++|.+.+..|..++..+++|++|++++|.+++
T Consensus 106 L~~N~l~~-~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISR-VSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCC-EEEC-CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCC-CCcc-ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99999984 4433 2378999999999999888877776 8999999999999987888777568999999999999996
Q ss_pred cCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCccc-c-cCCCCc
Q 037101 271 CLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFT-H-AGPLCR 348 (395)
Q Consensus 271 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~-~~~~~~ 348 (395)
. +. +..+++|++|+|++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. + .+..+.
T Consensus 184 ~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 V-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp E-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred c-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 5 32 4469999999999999996 45558899999999999999976 6778999999999999999998 3 333467
Q ss_pred CCCCCCEEEcc
Q 037101 349 FLIEKGVLDVR 359 (395)
Q Consensus 349 ~l~~L~~L~L~ 359 (395)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 77777777775
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2.6e-24 Score=211.50 Aligned_cols=228 Identities=20% Similarity=0.188 Sum_probs=194.2
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLD 191 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 191 (395)
.+++.|++++|.+.+ ++ .+..+++|++|++++|.+++. + ++.+++|++|++++|.+++. + ++++++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred CCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 489999999999998 34 589999999999999999974 4 89999999999999999964 4 89999999999
Q ss_pred eecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcc
Q 037101 192 IRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTG 270 (395)
Q Consensus 192 Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~ 270 (395)
+++|++++ +| ....++|++|++++|.+.+. + ++. ++|++|++++|...+.++ +..+++|++|++++|++++
T Consensus 113 L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 113 CDTNKLTK-LD-VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCSSCCSC-CC-CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCe-ec-CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce
Confidence 99999994 65 22338999999999999863 3 444 899999999997666764 3348999999999999996
Q ss_pred cCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcCC
Q 037101 271 CLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFL 350 (395)
Q Consensus 271 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l 350 (395)
+| ++.+++|+.|++++|++++. .+..+++|++|++++|++++ +| +..+++|+.|++++|++++.+ +..+
T Consensus 185 -l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l 253 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTL 253 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred -ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHC
Confidence 45 88999999999999999964 38889999999999999987 55 889999999999999999975 4566
Q ss_pred CCCCEEEccCCCCCCCC
Q 037101 351 IEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 351 ~~L~~L~L~~N~i~~lp 367 (395)
++|+.|++++|+++.+.
T Consensus 254 ~~L~~L~l~~n~L~~L~ 270 (457)
T 3bz5_A 254 SKLTTLHCIQTDLLEID 270 (457)
T ss_dssp TTCCEEECTTCCCSCCC
T ss_pred CCCCEEeccCCCCCEEE
Confidence 77777777777766654
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.2e-25 Score=228.04 Aligned_cols=216 Identities=26% Similarity=0.264 Sum_probs=98.8
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
+++.|++++|.+.. ++. .+++|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|++
T Consensus 62 ~L~~L~L~~N~l~~--lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L 128 (622)
T 3g06_A 62 HITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI 128 (622)
T ss_dssp TCSEEEECSCCCSC--CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred CCcEEEecCCCCCC--CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence 44444444444443 221 2344455555555444 2332 34445555555555442 222 3444555555
Q ss_pred ecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccC
Q 037101 193 RFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCL 272 (395)
Q Consensus 193 s~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~ 272 (395)
++|+++ .+|..+ ++|++|++++|.+.+ +|.. ..+|+.|++++|.+. .+| ..+++|++|++++|.+++ +
T Consensus 129 ~~N~l~-~lp~~l--~~L~~L~Ls~N~l~~-l~~~--~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l 196 (622)
T 3g06_A 129 FGNQLT-SLPVLP--PGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-L 196 (622)
T ss_dssp CSSCCS-CCCCCC--TTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-C
T ss_pred CCCCCC-cCCCCC--CCCCEEECcCCcCCC-cCCc--cCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-C
Confidence 555554 344322 455555555555542 2221 135555555555555 344 124667777777777663 3
Q ss_pred chhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcCCCC
Q 037101 273 PYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIE 352 (395)
Q Consensus 273 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 352 (395)
|.. +++|+.|++++|.++ .+|.. +++|+.|++++|.+++ +| ..+++|+.|++++|.|+.++. .+++
T Consensus 197 ~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~ 262 (622)
T 3g06_A 197 PTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSG 262 (622)
T ss_dssp CCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTT
T ss_pred CCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---cccc
Confidence 322 234444444444444 22221 2345555555555433 22 223444455555554444333 3344
Q ss_pred CCEEEccCCCCCCCC
Q 037101 353 KGVLDVRNNCIPDLP 367 (395)
Q Consensus 353 L~~L~L~~N~i~~lp 367 (395)
|+.|+|++|+|+.+|
T Consensus 263 L~~L~Ls~N~L~~lp 277 (622)
T 3g06_A 263 LLSLSVYRNQLTRLP 277 (622)
T ss_dssp CCEEECCSSCCCSCC
T ss_pred CcEEeCCCCCCCcCC
Confidence 444555555444444
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=9.3e-25 Score=202.01 Aligned_cols=202 Identities=19% Similarity=0.206 Sum_probs=114.6
Q ss_pred cCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCe
Q 037101 133 LDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDF 212 (395)
Q Consensus 133 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~ 212 (395)
+.++++++.++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++ .++.....++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTTCCE
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCCCCCCcCCE
Confidence 455666677777766666 3444432 56777777777777666666777777777777777776 3433322245555
Q ss_pred eeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCc
Q 037101 213 LFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQ 291 (395)
Q Consensus 213 L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 291 (395)
|++++|.+. .+|..+.. ++|++|++++|++. .++...+..+++|++|++++|++++..+..|..+++|+.|+|++|+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 555555544 33333333 45555555555555 3333333335566666666666664444445556666666666666
Q ss_pred ccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCccc
Q 037101 292 LTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFT 341 (395)
Q Consensus 292 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 341 (395)
+++..+..+..+++|++|++++|+++ .+|..+..+.+|+.++|++|.+.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 66433344455566666666666653 34555555556666666666554
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.1e-24 Score=199.98 Aligned_cols=220 Identities=15% Similarity=0.065 Sum_probs=144.3
Q ss_pred EEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCc
Q 037101 117 IDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNY 196 (395)
Q Consensus 117 L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 196 (395)
++-.+.++.. ++..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|+
T Consensus 12 ~~c~~~~l~~--ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFYK--IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCSS--CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCccc--cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4555555544 333222 468888888888887666678888888888888888886666678888888888888888
Q ss_pred CCCCCCchhcc-CCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCccc-Cch
Q 037101 197 FTGSVPPQIFT-QNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGC-LPY 274 (395)
Q Consensus 197 l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~-~~~ 274 (395)
+++..+..+.. ++|++|++++|.+.+..+.. +..+++|++|++++|.+++. +|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------------~~~l~~L~~L~l~~n~l~~~~l~~ 143 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFP------------------------IGHLKTLKELNVAHNLIQSFKLPE 143 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCC------------------------CTTCTTCCEEECCSSCCCCCCCCG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchh------------------------cccCCCCCEEECcCCccceecCch
Confidence 87333232222 45555555555444222212 23366777777777776642 466
Q ss_pred hhcCCCCCcEEEccCCcccccCchhccCCCCCC----eeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-CcC
Q 037101 275 EIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVE----QLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRF 349 (395)
Q Consensus 275 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~ 349 (395)
.+..+++|++|++++|++++..+..+..+.+|+ +|++++|.+.+..+..+. ..+|+.|++++|.++++++. +..
T Consensus 144 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTT
T ss_pred hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcc
Confidence 677777777777777777765555565555555 677777777655444333 34677777777777776664 567
Q ss_pred CCCCCEEEccCCCCCC
Q 037101 350 LIEKGVLDVRNNCIPD 365 (395)
Q Consensus 350 l~~L~~L~L~~N~i~~ 365 (395)
+++|++|+|++|+++.
T Consensus 223 l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCSCCEEECCSSCBCC
T ss_pred cccccEEEccCCcccc
Confidence 7777777777777775
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.9e-24 Score=198.30 Aligned_cols=208 Identities=15% Similarity=0.108 Sum_probs=148.8
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLD 191 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 191 (395)
..++.|++++|.+.+ ..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 479999999999987 3455789999999999999999987777899999999999999999988888899999999999
Q ss_pred eecCcCCCCCCchhcc-CCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcc
Q 037101 192 IRFNYFTGSVPPQIFT-QNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTG 270 (395)
Q Consensus 192 Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~ 270 (395)
+++|.+.+..+..+.. ++|++|++++|.+.+. .+|..+.. +++|++|++++|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~l~~~~~~-l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------KLPEYFSN-LTNLEHLDLSSNKIQS 163 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------------------CCCGGGGG-CTTCCEEECCSSCCCE
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCcccee----------------------cCchhhcc-CCCCCEEECCCCCCCc
Confidence 9999998433323222 5666666666665531 13333332 5666666666666665
Q ss_pred cCchhhcCCCCCc----EEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccC
Q 037101 271 CLPYEIGYLKEAV----VFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAG 344 (395)
Q Consensus 271 ~~~~~~~~l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 344 (395)
..+..+..+.+|+ .|++++|.+++..+..+ ...+|++|++++|++++..+..|..+++|+.|++++|.++..-
T Consensus 164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 5445554444444 67777777764433333 3346777777777776655555667777777777777776543
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=4.1e-25 Score=206.39 Aligned_cols=224 Identities=17% Similarity=0.127 Sum_probs=178.2
Q ss_pred CCCcEEECCCCCCCCCCcc---ccCCCCCCCEEEccCCCCCCCcchhh--cCCCCCcEEEeecCcCCCCCCchh-----c
Q 037101 137 PDIALFHANSNNFAGTISS---NIAKLPYLYELDISNNKFSGPFPAAV--LGMNNLEFLDIRFNYFTGSVPPQI-----F 206 (395)
Q Consensus 137 ~~L~~L~l~~n~l~~~~p~---~~~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~-----~ 206 (395)
..++.+.+.++.+....-. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+... .
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3467888887776532111 12234679999999999998888888 899999999999999987655221 2
Q ss_pred cCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCC--CchHH-HhcCCCCcEEEccCCcCcccCch----hhcC
Q 037101 207 TQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGP--LPRSI-FKAFSELTEVLLVNNQLTGCLPY----EIGY 278 (395)
Q Consensus 207 ~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~--~p~~~-~~~l~~L~~L~l~~n~l~~~~~~----~~~~ 278 (395)
.++|++|++++|.+.+..+..+.. ++|++|++++|++.+. ++... ...+++|++|++++|+++ .++. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 379999999999998777777766 8999999999997642 22222 235889999999999997 3333 3578
Q ss_pred CCCCcEEEccCCcccccCchhccCC---CCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcCCCCCCE
Q 037101 279 LKEAVVFDVGDNQLTGQLPFSLACL---EKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGV 355 (395)
Q Consensus 279 l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~ 355 (395)
+++|++|+|++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|+|++|++++++ .+..+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~-~~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP-QPDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC-CTTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc-hhhhCCCccE
Confidence 8999999999999998778777776 69999999999997 5677664 89999999999999874 4788899999
Q ss_pred EEccCCCCCC
Q 037101 356 LDVRNNCIPD 365 (395)
Q Consensus 356 L~L~~N~i~~ 365 (395)
|+|++|+|++
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999976
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=3.6e-25 Score=217.40 Aligned_cols=234 Identities=23% Similarity=0.265 Sum_probs=114.1
Q ss_pred ccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCC-------------CEEEccCCCCCCC
Q 037101 110 TAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYL-------------YELDISNNKFSGP 176 (395)
Q Consensus 110 ~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L-------------~~L~Ls~n~l~~~ 176 (395)
...++++|++++|.+ + .+|..++++++|++|++++|.+.+.+|..++++.+| ++|++++|.+++
T Consensus 9 ~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~- 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS- 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred ccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence 345777788888777 3 356667777777777777777777777777666543 666666666663
Q ss_pred cchhhcCCCCCcEEEeecCcCCCCCCchh------------------ccCCCCeeeeccccCcccCCccccC-ccccEEE
Q 037101 177 FPAAVLGMNNLEFLDIRFNYFTGSVPPQI------------------FTQNLDFLFINNNGFMIKLPDNIGS-THILFLT 237 (395)
Q Consensus 177 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~------------------~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~ 237 (395)
+|.. .++|++|++++|.+++ +|... ..++|++|++++|.+.+ +|. ++. ++|++|+
T Consensus 86 lp~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp~-~~~l~~L~~L~ 159 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LPE-LQNSSFLKIID 159 (454)
T ss_dssp CCSC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CCC-CTTCTTCCEEE
T ss_pred CCCC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Ccc-cCCCCCCCEEE
Confidence 3321 2455555555555553 44321 01345555555555553 442 333 5555555
Q ss_pred cccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCC
Q 037101 238 LANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLF 317 (395)
Q Consensus 238 l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 317 (395)
+++|++. .+|.. ..+|++|++++|++++ +| .++.+++|++|++++|++++ +|... ++|++|++++|.+.
T Consensus 160 l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 160 VDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE 228 (454)
T ss_dssp CCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS
T ss_pred CCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC
Confidence 5555555 24331 2355555555555553 33 35555666666666666553 33221 35666666666654
Q ss_pred CCChhhhcCCCCCcEEEccCCcccccCCCCcCCCCCCEEEccCCCCCCCCC
Q 037101 318 GMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 318 ~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~lp~ 368 (395)
.+|. +..+++|+.|++++|++++++.. +++|++|++++|+++++|.
T Consensus 229 -~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~ 274 (454)
T 1jl5_A 229 -ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPE 274 (454)
T ss_dssp -SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCC
T ss_pred -cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCc
Confidence 3443 56666666666666666654332 2556666666666666553
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.9e-23 Score=205.16 Aligned_cols=225 Identities=23% Similarity=0.295 Sum_probs=129.9
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
+++.|++++|.+.+ ++ .+..+++|++|++++|.+++ +|..+ .+|++|++++|.+++ +| .+.++++|++|++
T Consensus 132 ~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 56666666666665 33 36667777777777776664 44322 466777777776664 44 4677777777777
Q ss_pred ecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCccc
Q 037101 193 RFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGC 271 (395)
Q Consensus 193 s~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~ 271 (395)
++|+++ .+|... .+|++|++++|.+. .+|. ++. ++|++|++++|++. .+|.. +++|++|++++|++++
T Consensus 203 ~~N~l~-~l~~~~--~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~N~l~~- 271 (454)
T 1jl5_A 203 DNNSLK-KLPDLP--LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLTD- 271 (454)
T ss_dssp CSSCCS-SCCCCC--TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCCSC-
T ss_pred CCCcCC-cCCCCc--CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC-ccccc----ccccCEEECCCCcccc-
Confidence 777776 344322 46777777777666 5554 333 66777777777766 34431 3556666666666653
Q ss_pred CchhhcCCCCCcEEEccCCcccc--cCchhcc-------------CC-CCCCeeecccCcCCCCChhhhcCCCCCcEEEc
Q 037101 272 LPYEIGYLKEAVVFDVGDNQLTG--QLPFSLA-------------CL-EKVEQLNFANNLLFGMVPEAVCGLPNLLHFSL 335 (395)
Q Consensus 272 ~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~-------------~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 335 (395)
+|.. +++|++|++++|++++ .+|..+. .+ ++|++|++++|++++ +|.. +++|+.|++
T Consensus 272 l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L 344 (454)
T 1jl5_A 272 LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIA 344 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEEC
Confidence 3322 2455555555555553 1221111 11 356666666666644 3332 356666666
Q ss_pred cCCcccccCCCCcCCCCCCEEEccCCCCCCCC
Q 037101 336 SDNYFTHAGPLCRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 336 ~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~lp 367 (395)
++|++++++. .+++|++|++++|+++++|
T Consensus 345 ~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~ 373 (454)
T 1jl5_A 345 SFNHLAEVPE---LPQNLKQLHVEYNPLREFP 373 (454)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSSCC
T ss_pred CCCccccccc---hhhhccEEECCCCCCCcCC
Confidence 6666665443 3566666666666666643
No 71
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=3.5e-24 Score=193.91 Aligned_cols=191 Identities=19% Similarity=0.222 Sum_probs=116.3
Q ss_pred CCCCcceeeeCCCCCCCccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCC
Q 037101 93 DICNYKGFYCESPPDNETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNK 172 (395)
Q Consensus 93 ~~C~w~gv~c~~~~~~~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 172 (395)
+||.|.|..|.. ..+.++++++.+.. ++..+. ++++.|++++|.+.+..+..|.++++|++|+|++|.
T Consensus 3 ~Cp~~~gC~C~~--------~~~~l~~~~~~l~~--~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 70 (251)
T 3m19_A 3 TCETVTGCTCNE--------GKKEVDCQGKSLDS--VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ 70 (251)
T ss_dssp -CHHHHSSEEEG--------GGTEEECTTCCCSS--CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCCCCceEcCC--------CCeEEecCCCCccc--cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc
Confidence 466899999953 56678999998886 343333 578888888888887777778888888888888888
Q ss_pred CCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHH
Q 037101 173 FSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIF 252 (395)
Q Consensus 173 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 252 (395)
+++..+..|..+++|++|++++|+++ .+|... +
T Consensus 71 l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~----------------------------------------------~ 103 (251)
T 3m19_A 71 LQTLSAGVFDDLTELGTLGLANNQLA-SLPLGV----------------------------------------------F 103 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTT----------------------------------------------T
T ss_pred CCccCHhHhccCCcCCEEECCCCccc-ccChhH----------------------------------------------h
Confidence 88777777888888888888888877 333221 1
Q ss_pred hcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcE
Q 037101 253 KAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLH 332 (395)
Q Consensus 253 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 332 (395)
..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|++.+..+..|..+++|+.
T Consensus 104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 12334444444444444333333444444444444444444333334444445555555555544444444444555555
Q ss_pred EEccCCcccc
Q 037101 333 FSLSDNYFTH 342 (395)
Q Consensus 333 L~L~~N~l~~ 342 (395)
|++++|.++.
T Consensus 184 L~l~~N~~~c 193 (251)
T 3m19_A 184 ITLFGNQFDC 193 (251)
T ss_dssp EECCSCCBCT
T ss_pred EEeeCCceeC
Confidence 5555555443
No 72
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=1.7e-25 Score=213.54 Aligned_cols=249 Identities=16% Similarity=0.164 Sum_probs=182.6
Q ss_pred EEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCc----cccCCCC-CCCEEEccCCCCCCCcchhhcCC-----CC
Q 037101 117 IDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTIS----SNIAKLP-YLYELDISNNKFSGPFPAAVLGM-----NN 186 (395)
Q Consensus 117 L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~ 186 (395)
++++.+.+++ .++..+...++|++|++++|.+++..+ ..+..++ +|++|+|++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSN-PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCC-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchH-HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 5678888887 355556666669999999998887666 6677788 89999999998887777777665 88
Q ss_pred CcEEEeecCcCCCCCCchhcc------CCCCeeeeccccCcccCCccccC------ccccEEEcccCCCCCCCchHHHh-
Q 037101 187 LEFLDIRFNYFTGSVPPQIFT------QNLDFLFINNNGFMIKLPDNIGS------THILFLTLANNKFIGPLPRSIFK- 253 (395)
Q Consensus 187 L~~L~Ls~n~l~~~~p~~~~~------~~L~~L~L~~n~l~~~~~~~~~~------~~L~~L~l~~n~l~~~~p~~~~~- 253 (395)
|++|+|++|.+++..+..+.. ++|++|++++|.+.+..+..+.. .+|++|++++|.+.+.....+..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999888655553332 58899999999887655544332 48999999999888544433321
Q ss_pred --cCC-CCcEEEccCCcCcccCchhh----cCC-CCCcEEEccCCccccc----CchhccC-CCCCCeeecccCcCCCCC
Q 037101 254 --AFS-ELTEVLLVNNQLTGCLPYEI----GYL-KEAVVFDVGDNQLTGQ----LPFSLAC-LEKVEQLNFANNLLFGMV 320 (395)
Q Consensus 254 --~l~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~Ls~n~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~ 320 (395)
.++ +|++|++++|++++..+..+ ..+ ++|++|+|++|.+++. ++..+.. .++|++|+|++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 233 89999999999886665444 344 5899999999998853 4445554 358999999999987765
Q ss_pred h----hhhcCCCCCcEEEccCCccccc--------CCCCcCCCCCCEEEccCCCCCCC
Q 037101 321 P----EAVCGLPNLLHFSLSDNYFTHA--------GPLCRFLIEKGVLDVRNNCIPDL 366 (395)
Q Consensus 321 p----~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~l~~L~~L~L~~N~i~~l 366 (395)
+ ..+..+++|+.|++++|.+.++ ...+..+++|++||+++|+|...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 5 3346678899999999985443 23467788888999999988763
No 73
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.4e-25 Score=216.02 Aligned_cols=238 Identities=20% Similarity=0.222 Sum_probs=158.3
Q ss_pred ccccCCCCCCcEEECCCCCCCCCC----ccccCCCCCCCEEEccCCC---CCCCcchhh-------cCCCCCcEEEeecC
Q 037101 130 DGFLDQLPDIALFHANSNNFAGTI----SSNIAKLPYLYELDISNNK---FSGPFPAAV-------LGMNNLEFLDIRFN 195 (395)
Q Consensus 130 ~~~l~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~Ls~n~---l~~~~p~~l-------~~l~~L~~L~Ls~n 195 (395)
...+..+++|++|++++|.+.... +..+..+++|++|+|++|. +++.+|..+ ..+++|++|+|++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 334555666666666666665442 2335566666666666643 333444433 46666666666666
Q ss_pred cCCCC----CCchhcc-CCCCeeeeccccCcccCCccccC--------------ccccEEEcccCCCC-CCCch--HHHh
Q 037101 196 YFTGS----VPPQIFT-QNLDFLFINNNGFMIKLPDNIGS--------------THILFLTLANNKFI-GPLPR--SIFK 253 (395)
Q Consensus 196 ~l~~~----~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~--------------~~L~~L~l~~n~l~-~~~p~--~~~~ 253 (395)
.+++. +|..+.. ++|++|++++|.+....+..+.. ++|++|++++|++. +.++. ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 66642 3333322 56666666666664332222222 47888888888886 33442 2233
Q ss_pred cCCCCcEEEccCCcCcc-----cCchhhcCCCCCcEEEccCCccc----ccCchhccCCCCCCeeecccCcCCCC----C
Q 037101 254 AFSELTEVLLVNNQLTG-----CLPYEIGYLKEAVVFDVGDNQLT----GQLPFSLACLEKVEQLNFANNLLFGM----V 320 (395)
Q Consensus 254 ~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~ 320 (395)
.+++|++|++++|+++. ..+..+..+++|++|+|++|.++ ..+|..+..+++|++|+|++|.+++. +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 47889999999998873 23436788889999999999985 46777888888999999999998765 4
Q ss_pred hhhhc--CCCCCcEEEccCCcccc-----cCCCC-cCCCCCCEEEccCCCCCCCC
Q 037101 321 PEAVC--GLPNLLHFSLSDNYFTH-----AGPLC-RFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 321 p~~~~--~l~~L~~L~L~~N~l~~-----~~~~~-~~l~~L~~L~L~~N~i~~lp 367 (395)
+..+. .+++|+.|+|++|.+++ ++..+ .++++|++|+|++|++++..
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 56663 38899999999999887 44444 56789999999999888744
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=5.3e-23 Score=208.61 Aligned_cols=221 Identities=24% Similarity=0.289 Sum_probs=186.1
Q ss_pred ccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 037101 110 TAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEF 189 (395)
Q Consensus 110 ~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 189 (395)
...+++.|++++|.+++ ++. .+++|++|++++|.+++ +|. .+++|++|++++|++++ +|.. +++|++
T Consensus 79 ~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~ 145 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQE 145 (622)
T ss_dssp CCTTCCEEEECSCCCSC--CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred cCCCCCEEEcCCCcCCc--CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCE
Confidence 34689999999999986 443 78999999999999985 444 67899999999999994 6653 589999
Q ss_pred EEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCc
Q 037101 190 LDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLT 269 (395)
Q Consensus 190 L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~ 269 (395)
|++++|.++ .+|. ...+|+.|++++|.+.. +| ...++|++|++++|.+. .+|.. +++|+.|++++|.++
T Consensus 146 L~Ls~N~l~-~l~~--~~~~L~~L~L~~N~l~~-l~--~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 146 LSVSDNQLA-SLPA--LPSELCKLWAYNNQLTS-LP--MLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT 214 (622)
T ss_dssp EECCSSCCS-CCCC--CCTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS
T ss_pred EECcCCcCC-CcCC--ccCCCCEEECCCCCCCC-Cc--ccCCCCcEEECCCCCCC-CCCCc----cchhhEEECcCCccc
Confidence 999999998 5665 34789999999999984 55 22378999999999998 56642 579999999999999
Q ss_pred ccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcC
Q 037101 270 GCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRF 349 (395)
Q Consensus 270 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 349 (395)
.+|. .+++|++|++++|.+++ +| ..+++|+.|++++|++++ +|. .+++|+.|+|++|.|+.++..+..
T Consensus 215 -~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~~lp~~l~~ 282 (622)
T 3g06_A 215 -SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLTRLPESLIH 282 (622)
T ss_dssp -SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCCSCCGGGGG
T ss_pred -ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCCcCCHHHhh
Confidence 5554 35889999999999994 66 456899999999999964 555 678999999999999988777999
Q ss_pred CCCCCEEEccCCCCCCC
Q 037101 350 LIEKGVLDVRNNCIPDL 366 (395)
Q Consensus 350 l~~L~~L~L~~N~i~~l 366 (395)
+++|+.|+|++|.|++.
T Consensus 283 l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 283 LSSETTVNLEGNPLSER 299 (622)
T ss_dssp SCTTCEEECCSCCCCHH
T ss_pred ccccCEEEecCCCCCCc
Confidence 99999999999999874
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.8e-23 Score=193.28 Aligned_cols=203 Identities=18% Similarity=0.100 Sum_probs=174.9
Q ss_pred cCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhcc-CCCCeeeeccccCcccCCccccCccccE
Q 037101 157 IAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT-QNLDFLFINNNGFMIKLPDNIGSTHILF 235 (395)
Q Consensus 157 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~ 235 (395)
+++++++++++++++.++ .+|..+. +++++|++++|.+++..+..+.. ++|++|++++|.+.+. +.....++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECCSCCTTCCE
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCCCCCCcCCE
Confidence 678899999999999999 6776553 78999999999998544444443 8999999999999854 33333389999
Q ss_pred EEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCc
Q 037101 236 LTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNL 315 (395)
Q Consensus 236 L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 315 (395)
|++++|++. .+|..+.. +++|++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|+
T Consensus 82 L~Ls~N~l~-~l~~~~~~-l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EECCSSCCS-SCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCC-cCchhhcc-CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 999999998 78876544 8999999999999997777889999999999999999997777778899999999999999
Q ss_pred CCCCChhhhcCCCCCcEEEccCCcccccCCCCcCCCCCCEEEccCCCCCC
Q 037101 316 LFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 316 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~ 365 (395)
+++..+..|..+++|+.|+|++|.++.++..+..+++|+.|+|++|.+..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 98776677889999999999999999988888888999999999998764
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=2.2e-25 Score=210.24 Aligned_cols=256 Identities=14% Similarity=0.145 Sum_probs=200.7
Q ss_pred CcceeeeCCCCCCCccccEEEEEcCCCCcCCCCcccccCCC--CCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCC
Q 037101 96 NYKGFYCESPPDNETAIAVASIDFNGFQLSAPTLDGFLDQL--PDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKF 173 (395)
Q Consensus 96 ~w~gv~c~~~~~~~~~~~l~~L~Ls~~~l~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 173 (395)
.|.++.|+. ..++.++++++.+. +..+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+
T Consensus 38 ~W~~~~~~~-------~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 38 RWYRLASDE-------SLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp HHHHHHTCS-------TTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE
T ss_pred HHHHHhcCc-------hhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc
Confidence 688887753 15778999998876 3445666 8999999999999877665 56799999999999998
Q ss_pred CCC-cchhhcCCCCCcEEEeecCcCCCCCCchhcc-CCCCeeeeccc-cCccc-CCccccC-ccccEEEcccC-CCCCC-
Q 037101 174 SGP-FPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT-QNLDFLFINNN-GFMIK-LPDNIGS-THILFLTLANN-KFIGP- 246 (395)
Q Consensus 174 ~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n-~l~~~-~~~~~~~-~~L~~L~l~~n-~l~~~- 246 (395)
++. ++..+..+++|++|++++|.+++..+..+.. ++|++|++++| .+++. ++..+.. ++|++|++++| .+++.
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 865 8888999999999999999988666665554 89999999999 56643 4544444 89999999999 88754
Q ss_pred CchHHHhcCC-CCcEEEccCC--cCc-ccCchhhcCCCCCcEEEccCCc-ccccCchhccCCCCCCeeecccCc-CCCCC
Q 037101 247 LPRSIFKAFS-ELTEVLLVNN--QLT-GCLPYEIGYLKEAVVFDVGDNQ-LTGQLPFSLACLEKVEQLNFANNL-LFGMV 320 (395)
Q Consensus 247 ~p~~~~~~l~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~ 320 (395)
++..+. .++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +....
T Consensus 186 ~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 186 VQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp HHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred HHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence 444444 488 9999999999 555 4667778889999999999999 777778889999999999999995 33332
Q ss_pred hhhhcCCCCCcEEEccCCcccccCCCCcCC-CCCCEEEccCCCCCCCC
Q 037101 321 PEAVCGLPNLLHFSLSDNYFTHAGPLCRFL-IEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 321 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l-~~L~~L~L~~N~i~~lp 367 (395)
...+..+++|+.|++++| ++.. .+..+ .++..|++++|++++..
T Consensus 265 ~~~l~~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIA 309 (336)
T ss_dssp GGGGGGCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTT
T ss_pred HHHHhcCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecccCcccc
Confidence 336788999999999999 4332 23333 23666779999999854
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=3.3e-23 Score=193.29 Aligned_cols=192 Identities=18% Similarity=0.327 Sum_probs=126.4
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
+++.|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus 42 ~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 42 GITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp TCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred CcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 56666666666554 22 25555666666666666553322 5556666666666666553 22 3555666666666
Q ss_pred ecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCccc
Q 037101 193 RFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGC 271 (395)
Q Consensus 193 s~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~ 271 (395)
++|+++ .++. +.. ++|++|++++|.+. .++. +..+++|++|++++|.+++.
T Consensus 115 ~~n~l~-~~~~------------------------l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 115 TSTQIT-DVTP------------------------LAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp TTSCCC-CCGG------------------------GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCC-Cchh------------------------hcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCC
Confidence 666555 2222 222 56666677777666 3443 34478899999999988853
Q ss_pred CchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC
Q 037101 272 LPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP 345 (395)
Q Consensus 272 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 345 (395)
+. +..+++|+.|++++|++++..+ +..+++|++|++++|++.+.. .+..+++|+.|++++|.+++.+.
T Consensus 167 -~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 167 -TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp -GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred -hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 33 7888899999999998885433 778888999999999886654 37888889999999998887544
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.7e-23 Score=190.40 Aligned_cols=203 Identities=20% Similarity=0.199 Sum_probs=126.4
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
+++.|+++++.+.. ++ .+..+++|++|++++|.+.+. +.+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 42 ~L~~L~l~~~~i~~--~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 42 SIDQIIANNSDIKS--VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TCCEEECTTSCCCC--CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ceeeeeeCCCCccc--cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 56666666666554 22 255566666666666666542 34666666666666666666555555666666666666
Q ss_pred ecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCccc
Q 037101 193 RFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGC 271 (395)
Q Consensus 193 s~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~ 271 (395)
++|+++ .++ +..+.. ++|++|++++|.+. .++...+..+++|++|++++|++++.
T Consensus 117 ~~n~l~-~~~----------------------~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 117 VENQLQ-SLP----------------------DGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCC-CCC----------------------TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCC-ccC----------------------HHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCcc
Confidence 666665 333 222332 45556666666555 44444444467777777777777766
Q ss_pred CchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-CcCC
Q 037101 272 LPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFL 350 (395)
Q Consensus 272 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l 350 (395)
.+..++.+++|++|++++|++++..+..+..+++|++|++++|.+.+. +++|+.|+++.|.++|.+|. ++.+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 566667777777777777777766666667777777777777776543 45677777777777776553 4444
Q ss_pred C
Q 037101 351 I 351 (395)
Q Consensus 351 ~ 351 (395)
.
T Consensus 246 ~ 246 (272)
T 3rfs_A 246 A 246 (272)
T ss_dssp C
T ss_pred C
Confidence 3
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.1e-23 Score=191.06 Aligned_cols=201 Identities=22% Similarity=0.235 Sum_probs=150.7
Q ss_pred cCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCe
Q 037101 133 LDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDF 212 (395)
Q Consensus 133 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~ 212 (395)
+..+++|+.|++++|.+.. + ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.++ .+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~-~~----------- 100 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ-SL----------- 100 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC-CC-----------
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC-cc-----------
Confidence 3455666777777666652 2 235666667777777776664 2 24666666666666666665 22
Q ss_pred eeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCc
Q 037101 213 LFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQ 291 (395)
Q Consensus 213 L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 291 (395)
.+..+.. ++|++|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 101 -----------~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 101 -----------PNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp -----------CTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -----------ChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC
Confidence 2222333 57788888888877 5555555558999999999999997777778899999999999999
Q ss_pred ccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcCCCCCCEEEccCCCCCC-CC
Q 037101 292 LTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPD-LP 367 (395)
Q Consensus 292 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~-lp 367 (395)
+++..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+. +++|+.|+++.|.+++ +|
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC------TTTTHHHHHHHHHTGGGBB
T ss_pred cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc------CcHHHHHHHHHHhCCCccc
Confidence 9977777788999999999999999888888889999999999999988754 4567888999998886 45
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.3e-22 Score=185.52 Aligned_cols=200 Identities=22% Similarity=0.272 Sum_probs=173.4
Q ss_pred CCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCch-hcc-CCCCeeeeccccCcccCCccccC-ccccEEE
Q 037101 161 PYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQ-IFT-QNLDFLFINNNGFMIKLPDNIGS-THILFLT 237 (395)
Q Consensus 161 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~ 237 (395)
..+++++++++.++ .+|..+. ++|++|++++|+++ .++.. +.. ++|++|++++|.+....+..+.. ++|++|+
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 35789999999999 6776553 68999999999998 56653 333 89999999999998544444454 8999999
Q ss_pred cccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCC
Q 037101 238 LANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLF 317 (395)
Q Consensus 238 l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 317 (395)
+++|.+. .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 92 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 92 VTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 9999998 666666666999999999999999888888899999999999999999766667899999999999999998
Q ss_pred CCChhhhcCCCCCcEEEccCCcccccCCC-CcCCCCCCEEEccCCCCCC
Q 037101 318 GMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 318 ~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~i~~ 365 (395)
+..+..|..+++|+.|++++|.++++++. +..+++|+.|+|++|.+..
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 87777899999999999999999998775 7889999999999998865
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=195.29 Aligned_cols=225 Identities=18% Similarity=0.105 Sum_probs=179.2
Q ss_pred cEEEEEcCCCCcCCCCccc--ccCCCCCCcEEECCCCCCCCCCcccc--CCCCCCCEEEccCCCCCCCcc----hhhcCC
Q 037101 113 AVASIDFNGFQLSAPTLDG--FLDQLPDIALFHANSNNFAGTISSNI--AKLPYLYELDISNNKFSGPFP----AAVLGM 184 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p----~~l~~l 184 (395)
+++.+++.++.+....+.. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 5778888887765421111 12234679999999999999999887 899999999999999997554 445679
Q ss_pred CCCcEEEeecCcCCCCCCchhcc-CCCCeeeeccccCccc--CC--ccccC-ccccEEEcccCCCCCCCch---HHHhcC
Q 037101 185 NNLEFLDIRFNYFTGSVPPQIFT-QNLDFLFINNNGFMIK--LP--DNIGS-THILFLTLANNKFIGPLPR---SIFKAF 255 (395)
Q Consensus 185 ~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~--~~--~~~~~-~~L~~L~l~~n~l~~~~p~---~~~~~l 255 (395)
++|++|++++|++++..+..+.. ++|++|++++|++.+. ++ ..+.. ++|++|++++|+++ .++. .++..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 99999999999998544444433 8999999999997642 22 22233 78999999999997 4444 345568
Q ss_pred CCCcEEEccCCcCcccCchhhcCC---CCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcE
Q 037101 256 SELTEVLLVNNQLTGCLPYEIGYL---KEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLH 332 (395)
Q Consensus 256 ~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 332 (395)
++|++|++++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 999999999999998878777776 69999999999999 7787764 7999999999999774 33 678899999
Q ss_pred EEccCCccccc
Q 037101 333 FSLSDNYFTHA 343 (395)
Q Consensus 333 L~L~~N~l~~~ 343 (395)
|++++|.+++.
T Consensus 299 L~L~~N~l~~~ 309 (310)
T 4glp_A 299 LTLDGNPFLVP 309 (310)
T ss_dssp EECSSTTTSCC
T ss_pred EECcCCCCCCC
Confidence 99999999753
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=2e-24 Score=206.10 Aligned_cols=227 Identities=15% Similarity=0.101 Sum_probs=183.8
Q ss_pred EEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcc----hhhcCCC-CCcEEEeecCcCCCCCCchhcc------CC
Q 037101 141 LFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFP----AAVLGMN-NLEFLDIRFNYFTGSVPPQIFT------QN 209 (395)
Q Consensus 141 ~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~------~~ 209 (395)
++.++.|.+++.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|.+++..+..+.. ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46789999999988888877889999999999997776 7888999 9999999999999766665554 79
Q ss_pred CCeeeeccccCcccCCccccC------ccccEEEcccCCCCCCCchHHHhc----CCCCcEEEccCCcCcccC----chh
Q 037101 210 LDFLFINNNGFMIKLPDNIGS------THILFLTLANNKFIGPLPRSIFKA----FSELTEVLLVNNQLTGCL----PYE 275 (395)
Q Consensus 210 L~~L~L~~n~l~~~~~~~~~~------~~L~~L~l~~n~l~~~~p~~~~~~----l~~L~~L~l~~n~l~~~~----~~~ 275 (395)
|++|++++|.+.+..+..+.. ++|++|++++|.+.+..+..+... .++|++|++++|.+++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998766654332 589999999999986665555432 369999999999998543 344
Q ss_pred hcCCC-CCcEEEccCCcccccCchhc----cCC-CCCCeeecccCcCCCC----ChhhhcC-CCCCcEEEccCCcccccC
Q 037101 276 IGYLK-EAVVFDVGDNQLTGQLPFSL----ACL-EKVEQLNFANNLLFGM----VPEAVCG-LPNLLHFSLSDNYFTHAG 344 (395)
Q Consensus 276 ~~~l~-~L~~L~Ls~n~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~~----~p~~~~~-l~~L~~L~L~~N~l~~~~ 344 (395)
+..++ +|++|+|++|++++..+..+ ..+ ++|++|+|++|.+++. ++..+.. .++|+.|+|++|.+++.+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 55665 99999999999997766544 344 5999999999999774 3445555 469999999999999865
Q ss_pred C-----CCcCCCCCCEEEccCCCCCCCC
Q 037101 345 P-----LCRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 345 ~-----~~~~l~~L~~L~L~~N~i~~lp 367 (395)
. .+..+++|++|+|++|.+..+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~ 269 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMS 269 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccC
Confidence 4 2578899999999999977654
No 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=9e-26 Score=222.00 Aligned_cols=181 Identities=15% Similarity=0.146 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCcCCC---CcccccCCCCCCcEEECCCCCCCCCCcccc-----CCCCCCCEEEccCCCCCCC----cchh
Q 037101 113 AVASIDFNGFQLSAP---TLDGFLDQLPDIALFHANSNNFAGTISSNI-----AKLPYLYELDISNNKFSGP----FPAA 180 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~---~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~Ls~n~l~~~----~p~~ 180 (395)
+++.|++++|.+... .++..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 466777777766531 234556666777777777766654322221 2244566666666666643 2444
Q ss_pred hcCCCCCcEEEeecCcCCCCCCchhc------cCCCCeeeeccccCccc----CCccccC-ccccEEEcccCCCCCCCc-
Q 037101 181 VLGMNNLEFLDIRFNYFTGSVPPQIF------TQNLDFLFINNNGFMIK----LPDNIGS-THILFLTLANNKFIGPLP- 248 (395)
Q Consensus 181 l~~l~~L~~L~Ls~n~l~~~~p~~~~------~~~L~~L~L~~n~l~~~----~~~~~~~-~~L~~L~l~~n~l~~~~p- 248 (395)
+..+++|++|++++|.+++..+..+. .++|++|++++|.+... ++..+.. ++|++|++++|.+.+...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 55566666666666665532222221 13566666666655532 2222222 455555555555442211
Q ss_pred ---hHHHhcCCCCcEEEccCCcCccc----CchhhcCCCCCcEEEccCCccc
Q 037101 249 ---RSIFKAFSELTEVLLVNNQLTGC----LPYEIGYLKEAVVFDVGDNQLT 293 (395)
Q Consensus 249 ---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~ 293 (395)
..++..+++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 11221244555555555555432 3344444555555555555544
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=9.1e-23 Score=183.12 Aligned_cols=195 Identities=16% Similarity=0.164 Sum_probs=131.1
Q ss_pred CCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCC-CCCCcchhhcCCCCCcEEEeec-CcCCCCCCchhcc--CCCCe
Q 037101 137 PDIALFHANSNNFAGTISSNIAKLPYLYELDISNNK-FSGPFPAAVLGMNNLEFLDIRF-NYFTGSVPPQIFT--QNLDF 212 (395)
Q Consensus 137 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~--~~L~~ 212 (395)
++|++|++++|.+++..+..|..+++|++|++++|+ ++...+..|.++++|++|++++ |+++ .+|...+. ++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence 378888888888887666678888888888888886 7755556788888888888888 8887 44433322 45555
Q ss_pred eeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCc---EEEccCC-cCcccCchhhcCCCCCc-EEEc
Q 037101 213 LFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELT---EVLLVNN-QLTGCLPYEIGYLKEAV-VFDV 287 (395)
Q Consensus 213 L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~L 287 (395)
|++++|.+.+ +|. +..+++|+ +|++++| .+++..+..|..+++|+ +|++
T Consensus 110 L~l~~n~l~~------------------------lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 110 LGIFNTGLKM------------------------FPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp EEEEEECCCS------------------------CCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred EeCCCCCCcc------------------------ccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 5555555542 333 22245555 7777777 66655555566777777 7777
Q ss_pred cCCcccccCchhccCCCCCCeeecccCc-CCCCChhhhcCC-CCCcEEEccCCcccccCCCCcCCCCCCEEEccCC
Q 037101 288 GDNQLTGQLPFSLACLEKVEQLNFANNL-LFGMVPEAVCGL-PNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNN 361 (395)
Q Consensus 288 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N 361 (395)
++|+++ .+|......++|++|++++|+ +++..+..|..+ ++|+.|++++|+++++++. .+++|+.|+++++
T Consensus 164 ~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 777777 444332233677777777774 765555667777 7777777777777766554 5667777777765
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.2e-24 Score=207.59 Aligned_cols=249 Identities=16% Similarity=0.173 Sum_probs=193.6
Q ss_pred ccEEEEEcCCCCcCCCC---cccccCCCCCCcEEECCCC---CCCCCCcccc-------CCCCCCCEEEccCCCCCC---
Q 037101 112 IAVASIDFNGFQLSAPT---LDGFLDQLPDIALFHANSN---NFAGTISSNI-------AKLPYLYELDISNNKFSG--- 175 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~---~~~~l~~l~~L~~L~l~~n---~l~~~~p~~~-------~~l~~L~~L~Ls~n~l~~--- 175 (395)
.+++.|+|++|.+.+.. +...+..+++|++|++++| .+.+.+|..+ ..+++|++|+|++|.+++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 37999999999987621 3344778999999999996 4455566555 789999999999999997
Q ss_pred -CcchhhcCCCCCcEEEeecCcCCCCCCchhcc--------------CCCCeeeeccccCc-ccCC---ccccC-ccccE
Q 037101 176 -PFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT--------------QNLDFLFINNNGFM-IKLP---DNIGS-THILF 235 (395)
Q Consensus 176 -~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--------------~~L~~L~L~~n~l~-~~~~---~~~~~-~~L~~ 235 (395)
.++..+..+++|++|+|++|.+++..+..+.. ++|++|++++|++. +.++ ..+.. ++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 47888999999999999999997443333332 69999999999997 3344 23333 79999
Q ss_pred EEcccCCCCCC----CchHHHhcCCCCcEEEccCCcCc----ccCchhhcCCCCCcEEEccCCccccc----Cchhcc--
Q 037101 236 LTLANNKFIGP----LPRSIFKAFSELTEVLLVNNQLT----GCLPYEIGYLKEAVVFDVGDNQLTGQ----LPFSLA-- 301 (395)
Q Consensus 236 L~l~~n~l~~~----~p~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~-- 301 (395)
|++++|.+... +....+..+++|++|++++|.++ +.++..+..+++|++|+|++|.+++. ++..+.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 99999998732 22212334899999999999996 57788899999999999999999865 566663
Q ss_pred CCCCCCeeecccCcCCC----CChhhh-cCCCCCcEEEccCCcccccCC---CC-cCCCCCCEEEccC
Q 037101 302 CLEKVEQLNFANNLLFG----MVPEAV-CGLPNLLHFSLSDNYFTHAGP---LC-RFLIEKGVLDVRN 360 (395)
Q Consensus 302 ~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~L~~N~l~~~~~---~~-~~l~~L~~L~L~~ 360 (395)
.+++|++|+|++|.+++ .+|..+ ..+++|+.|++++|.+++..+ .+ ..++.++.+++..
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 48999999999999987 477777 668999999999999998763 11 2344444445543
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.8e-22 Score=180.50 Aligned_cols=177 Identities=23% Similarity=0.203 Sum_probs=138.0
Q ss_pred CcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccC
Q 037101 187 LEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVN 265 (395)
Q Consensus 187 L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~ 265 (395)
.++++++++.++ .+|..+. +.++.|++++|.+.+..+..+.. ++|++|++++|.+.+ ++...+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCC
Confidence 334444444444 4443322 34555555555555444444444 678888888888774 4444445589999999999
Q ss_pred CcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC
Q 037101 266 NQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP 345 (395)
Q Consensus 266 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 345 (395)
|++++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..|..+++|+.|+|++|.++++++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 99997777888999999999999999997767778999999999999999988777789999999999999999999887
Q ss_pred -CCcCCCCCCEEEccCCCCCCC
Q 037101 346 -LCRFLIEKGVLDVRNNCIPDL 366 (395)
Q Consensus 346 -~~~~l~~L~~L~L~~N~i~~l 366 (395)
.+..+++|++|+|++|.++.-
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 488999999999999999764
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.6e-22 Score=181.42 Aligned_cols=202 Identities=16% Similarity=0.183 Sum_probs=142.6
Q ss_pred cccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCC-CCCCCccccCCCCCCCEEEccC-CCCCCCcchhhcCCCCCc
Q 037101 111 AIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNN-FAGTISSNIAKLPYLYELDISN-NKFSGPFPAAVLGMNNLE 188 (395)
Q Consensus 111 ~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~ 188 (395)
...++.|++++|++.+ +.+..|..+++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|.++++|+
T Consensus 30 ~~~l~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CTTCCEEEEESCCCSE-ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCcccEEEEeCCcceE-ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 3489999999999997 455578999999999999997 8766667899999999999999 999976677899999999
Q ss_pred EEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEcccC-CCCCCCchHHHhcCCCCc-EEEccCC
Q 037101 189 FLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANN-KFIGPLPRSIFKAFSELT-EVLLVNN 266 (395)
Q Consensus 189 ~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~~l~~L~-~L~l~~n 266 (395)
+|++++|+++ .+|......+|+ .|++|++++| .+. .++...+..+++|+ +|++++|
T Consensus 109 ~L~l~~n~l~-~lp~~~~l~~L~--------------------~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 109 FLGIFNTGLK-MFPDLTKVYSTD--------------------IFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEEEEEECCC-SCCCCTTCCBCC--------------------SEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSC
T ss_pred EEeCCCCCCc-cccccccccccc--------------------cccEEECCCCcchh-hcCcccccchhcceeEEEcCCC
Confidence 9999999998 577622224444 1224444444 433 34443344466677 7777777
Q ss_pred cCcccCchhhcCCCCCcEEEccCCc-ccccCchhccCC-CCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCc
Q 037101 267 QLTGCLPYEIGYLKEAVVFDVGDNQ-LTGQLPFSLACL-EKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNY 339 (395)
Q Consensus 267 ~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 339 (395)
+++ .+|......++|+.|++++|+ +++..+..+..+ ++|++|++++|++++. |.. .+++|+.|+++++.
T Consensus 167 ~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 167 GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred CCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 766 444333233667777777774 765555666677 7777777777777543 332 46677777776653
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.2e-21 Score=182.74 Aligned_cols=198 Identities=22% Similarity=0.319 Sum_probs=162.8
Q ss_pred cCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCe
Q 037101 133 LDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDF 212 (395)
Q Consensus 133 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~ 212 (395)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|+++ .++.....+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~~~~~l~---- 107 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSAIAGLQ---- 107 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGGGTTCT----
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-CchhhcCCC----
Confidence 4567899999999999875 44 58899999999999999995444 999999999999999998 455322113
Q ss_pred eeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcc
Q 037101 213 LFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQL 292 (395)
Q Consensus 213 L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 292 (395)
+|++|++++|.+. .++. +..+++|++|++++|.+++..+ +..+++|++|++++|++
T Consensus 108 -------------------~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 108 -------------------SIKTLDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp -------------------TCCEEECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred -------------------CCCEEECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcC
Confidence 5556666666655 4554 4458999999999999995543 88999999999999999
Q ss_pred cccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcCCCCCCEEEccCCCCCCCCC
Q 037101 293 TGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 293 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~lp~ 368 (395)
++ ++. +..+++|++|++++|++++..+ +..+++|+.|++++|.+++.++ +..+++|++|+|++|+++..|.
T Consensus 164 ~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 164 SD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred CC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence 95 444 8899999999999999976533 8889999999999999998874 8899999999999999998774
No 89
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=2.5e-24 Score=211.71 Aligned_cols=252 Identities=19% Similarity=0.142 Sum_probs=171.2
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCC----CCcEEECCCCCCCC----CCccccCCCCCCCEEEccCCCCCCCcchhhc-
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLP----DIALFHANSNNFAG----TISSNIAKLPYLYELDISNNKFSGPFPAAVL- 182 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~----~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~- 182 (395)
.+++.|++++|.+.+......+..++ +|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 47899999999887633333344455 69999999999884 4577888999999999999998755444333
Q ss_pred ----CCCCCcEEEeecCcCCCCCCchh----cc-CCCCeeeeccccCcccCCcccc------CccccEEEcccCCCCCC-
Q 037101 183 ----GMNNLEFLDIRFNYFTGSVPPQI----FT-QNLDFLFINNNGFMIKLPDNIG------STHILFLTLANNKFIGP- 246 (395)
Q Consensus 183 ----~l~~L~~L~Ls~n~l~~~~p~~~----~~-~~L~~L~L~~n~l~~~~~~~~~------~~~L~~L~l~~n~l~~~- 246 (395)
..++|++|++++|++++.....+ .. ++|++|++++|.+....+..+. .++|++|++++|.+.+.
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 35689999999999885432222 22 7999999999988754443332 24899999999998853
Q ss_pred ---CchHHHhcCCCCcEEEccCCcCcccC-----chhhcCCCCCcEEEccCCccccc----CchhccCCCCCCeeecccC
Q 037101 247 ---LPRSIFKAFSELTEVLLVNNQLTGCL-----PYEIGYLKEAVVFDVGDNQLTGQ----LPFSLACLEKVEQLNFANN 314 (395)
Q Consensus 247 ---~p~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N 314 (395)
++..+.. +++|++|++++|.+++.. +..+..+++|++|++++|.++.. ++..+..+++|++|++++|
T Consensus 216 ~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 216 CRDLCGIVAS-KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHH-CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHh-CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 4554444 899999999999987543 22233588999999999999853 5666777888888888888
Q ss_pred cCCCCChhhhcC-----CCCCcEEEccCCcccccC-----CCCcCCCCCCEEEccCCCCC
Q 037101 315 LLFGMVPEAVCG-----LPNLLHFSLSDNYFTHAG-----PLCRFLIEKGVLDVRNNCIP 364 (395)
Q Consensus 315 ~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~~-----~~~~~l~~L~~L~L~~N~i~ 364 (395)
.+.+..+..+.. .++|+.|++++|.+++.. ..+..+++|++|+|++|.|+
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 875433322221 145555555555554431 11333444455555554443
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=9.3e-23 Score=192.17 Aligned_cols=229 Identities=14% Similarity=0.095 Sum_probs=182.9
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCC-CccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGT-ISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFL 190 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 190 (395)
..++.|++++|.+.+. .+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQP-LAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSC-CCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCcccccc-chh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 5899999999999884 333 66899999999999998866 78889999999999999999998899999999999999
Q ss_pred EeecC-cCCCC-CCchhcc-CCCCeeeeccc-cCccc-CCccccC-c-cccEEEcccC--CCC-CCCchHHHhcCCCCcE
Q 037101 191 DIRFN-YFTGS-VPPQIFT-QNLDFLFINNN-GFMIK-LPDNIGS-T-HILFLTLANN--KFI-GPLPRSIFKAFSELTE 260 (395)
Q Consensus 191 ~Ls~n-~l~~~-~p~~~~~-~~L~~L~L~~n-~l~~~-~~~~~~~-~-~L~~L~l~~n--~l~-~~~p~~~~~~l~~L~~ 260 (395)
++++| .+++. ++..+.. ++|++|++++| .+++. ++..+.. + +|++|++++| .++ +.++..+. .+++|++
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~ 226 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR-RCPNLVH 226 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-HCTTCSE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-hCCCCCE
Confidence 99999 67642 4443333 89999999999 88754 4554554 7 9999999999 454 34555444 4899999
Q ss_pred EEccCCc-CcccCchhhcCCCCCcEEEccCCc-ccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCC
Q 037101 261 VLLVNNQ-LTGCLPYEIGYLKEAVVFDVGDNQ-LTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDN 338 (395)
Q Consensus 261 L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 338 (395)
|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| +.......+. .++..|++++|
T Consensus 227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n 303 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCS 303 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCC
T ss_pred EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecc
Confidence 9999999 777778889999999999999995 33222336788999999999999 5443333332 23666679999
Q ss_pred cccccCCC
Q 037101 339 YFTHAGPL 346 (395)
Q Consensus 339 ~l~~~~~~ 346 (395)
++++..+.
T Consensus 304 ~l~~~~~~ 311 (336)
T 2ast_B 304 HFTTIARP 311 (336)
T ss_dssp CSCCTTCS
T ss_pred cCccccCC
Confidence 99998764
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=6.4e-22 Score=198.42 Aligned_cols=204 Identities=23% Similarity=0.374 Sum_probs=129.2
Q ss_pred CCC-CCCCC-----Cccee-eeCCCCCCCccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCC
Q 037101 88 TWV-GSDIC-----NYKGF-YCESPPDNETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKL 160 (395)
Q Consensus 88 ~W~-~~~~C-----~w~gv-~c~~~~~~~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l 160 (395)
.|. ..++| .|.++ .|.. .+++.|++++|.+.+ ++..+ +++|++|++++|.++ .+| ..+
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~-------~~L~~L~Ls~n~L~~--lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l 99 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI-------NQFSELQLNRLNLSS--LPDNL--PPQITVLEITQNALI-SLP---ELP 99 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH-------TTCSEEECCSSCCSC--CCSCC--CTTCSEEECCSSCCS-CCC---CCC
T ss_pred HHhccCCccccccchhhhcccccc-------CCccEEEeCCCCCCc--cCHhH--cCCCCEEECcCCCCc-ccc---ccc
Confidence 353 34677 68888 6753 278899999998887 44333 377888888888887 566 456
Q ss_pred CCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEccc
Q 037101 161 PYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLAN 240 (395)
Q Consensus 161 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~ 240 (395)
++|++|++++|.+++ +|. +.+ +|++|++++|.+++ +|. ..++|++|++++|.+++ +|. ..++|++|++++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRN 169 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCS
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC--cCCCcCEEECCC
Confidence 788888888888885 666 554 88888888888874 666 44667777777777664 443 224566666666
Q ss_pred CCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCC-------cEEEccCCcccccCchhccCCCCCCeeeccc
Q 037101 241 NKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEA-------VVFDVGDNQLTGQLPFSLACLEKVEQLNFAN 313 (395)
Q Consensus 241 n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 313 (395)
|.+.+ +|. + . ++|++|++++|+++ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++
T Consensus 170 N~L~~-lp~-l-~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 170 NQLTF-LPE-L-P--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239 (571)
T ss_dssp SCCSC-CCC-C-C--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCS
T ss_pred CCCCC-cch-h-h--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeC
Confidence 66653 554 2 1 55666666666665 4444 332 44 55666666665 4555555555666666666
Q ss_pred CcCCCCChhhhcC
Q 037101 314 NLLFGMVPEAVCG 326 (395)
Q Consensus 314 N~l~~~~p~~~~~ 326 (395)
|.+++.+|..+..
T Consensus 240 N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 240 NPLSSRIRESLSQ 252 (571)
T ss_dssp SSCCHHHHHHHHH
T ss_pred CcCCCcCHHHHHH
Confidence 6655555554443
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=3.4e-21 Score=182.82 Aligned_cols=237 Identities=19% Similarity=0.211 Sum_probs=173.9
Q ss_pred CCcceeeeCCCC--CC--CccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCc-cccCCCCCCCE-EEc
Q 037101 95 CNYKGFYCESPP--DN--ETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTIS-SNIAKLPYLYE-LDI 168 (395)
Q Consensus 95 C~w~gv~c~~~~--~~--~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~-L~L 168 (395)
|.+..|.|.... .. ....+++.|+|++|+++. +.+++|.++++|++|+|++|.+.+.++ ..|.++++|++ +.+
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 678889996421 11 123578999999999987 455678999999999999999877665 45788888776 566
Q ss_pred cCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhcc--CCCCeeeecc-ccCcccCCccccC--ccccEEEcccCCC
Q 037101 169 SNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT--QNLDFLFINN-NGFMIKLPDNIGS--THILFLTLANNKF 243 (395)
Q Consensus 169 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--~~L~~L~L~~-n~l~~~~~~~~~~--~~L~~L~l~~n~l 243 (395)
++|+++...|..|..+++|++|++++|++. .+|...+. .++..+++.+ +.+....+..+.. ..+++|++++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 779999777888999999999999999998 66655443 5677788865 4454333333333 4688999999999
Q ss_pred CCCCchHHHhcCCCCcEEEccC-CcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChh
Q 037101 244 IGPLPRSIFKAFSELTEVLLVN-NQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPE 322 (395)
Q Consensus 244 ~~~~p~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 322 (395)
. .++...+. ..+|++|++.+ |.++...+..|..+++|++|++++|+|+ .+|.. .+.+|+.|.+.++.-...+|.
T Consensus 167 ~-~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 167 Q-EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp C-EECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC
T ss_pred c-CCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC
Confidence 8 77777776 57899999975 5566333456788999999999999998 45542 244555555555444456664
Q ss_pred hhcCCCCCcEEEccCCc
Q 037101 323 AVCGLPNLLHFSLSDNY 339 (395)
Q Consensus 323 ~~~~l~~L~~L~L~~N~ 339 (395)
+..+++|+.+++.++.
T Consensus 242 -l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 242 -LEKLVALMEASLTYPS 257 (350)
T ss_dssp -TTTCCSCCEEECSCHH
T ss_pred -chhCcChhhCcCCCCc
Confidence 7888999999998754
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=1.1e-20 Score=189.61 Aligned_cols=204 Identities=23% Similarity=0.292 Sum_probs=155.6
Q ss_pred CCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeecc
Q 037101 138 DIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINN 217 (395)
Q Consensus 138 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~ 217 (395)
+|+.|++++|.+++ +|..+ +++|++|+|++|+|+ .+| ..+++|++|++++|.+++ +|. +. .+|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECCC
Confidence 89999999999986 77655 388999999999999 677 558999999999999995 888 43 4999999999
Q ss_pred ccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCc
Q 037101 218 NGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLP 297 (395)
Q Consensus 218 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 297 (395)
|.+++ +|. ..++|++|++++|.++ .+|. .+++|++|++++|++++ +|. +. ++|++|+|++|+|+ .+|
T Consensus 130 N~l~~-lp~--~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 130 NQLTM-LPE--LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SCCSC-CCC--CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CcCCC-CCC--cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 99986 666 4478999999999998 4776 37899999999999996 666 55 89999999999999 677
Q ss_pred hhccCCCCC-------CeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-CcCCCC-------CCEEEccCCC
Q 037101 298 FSLACLEKV-------EQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFLIE-------KGVLDVRNNC 362 (395)
Q Consensus 298 ~~l~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~-------L~~L~L~~N~ 362 (395)
. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|.+++..+. +..++. ..++++++|.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~~~~ 272 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC----
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeecccc
Confidence 6 554 77 99999999996 4788788899999999999999886552 332211 1234566666
Q ss_pred CCCCCC
Q 037101 363 IPDLPF 368 (395)
Q Consensus 363 i~~lp~ 368 (395)
+..++.
T Consensus 273 ~~~~~~ 278 (571)
T 3cvr_A 273 QNTLHR 278 (571)
T ss_dssp ------
T ss_pred cccccc
Confidence 665543
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.3e-20 Score=178.82 Aligned_cols=237 Identities=14% Similarity=0.094 Sum_probs=179.0
Q ss_pred EEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcE-EEe
Q 037101 115 ASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFP-AAVLGMNNLEF-LDI 192 (395)
Q Consensus 115 ~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~-L~L 192 (395)
++++-++++++. +|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.++++|++ +.+
T Consensus 12 ~~v~C~~~~Lt~--iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTE--IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCS--CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCc--cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 356778888886 44433 3689999999999996556679999999999999999976666 46788988775 667
Q ss_pred ecCcCCCCCCchhcc--CCCCeeeeccccCcccCCccccC-ccccEEEcccC-CCCCCCchHHHhcC-CCCcEEEccCCc
Q 037101 193 RFNYFTGSVPPQIFT--QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANN-KFIGPLPRSIFKAF-SELTEVLLVNNQ 267 (395)
Q Consensus 193 s~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n-~l~~~~p~~~~~~l-~~L~~L~l~~n~ 267 (395)
..|+++ .+++..+. ++|++|++++|++....+..+.. .++..|++.++ .+. .++...+..+ ..+++|++++|+
T Consensus 88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSC
T ss_pred cCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccc
Confidence 779998 66655544 89999999999998555444443 67888998765 454 6666544444 468999999999
Q ss_pred CcccCchhhcCCCCCcEEEccC-CcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC
Q 037101 268 LTGCLPYEIGYLKEAVVFDVGD-NQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL 346 (395)
Q Consensus 268 l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 346 (395)
++ .++.......+|+.|++++ |.++...+..|..+++|++|++++|+|+...+.. +.+|+.|.+.++.-....|.
T Consensus 166 i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 166 IQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC
T ss_pred cc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC
Confidence 99 5665555667899999975 6777444456899999999999999996654433 55677777666543344556
Q ss_pred CcCCCCCCEEEccCC
Q 037101 347 CRFLIEKGVLDVRNN 361 (395)
Q Consensus 347 ~~~l~~L~~L~L~~N 361 (395)
+..+++|+.+++.++
T Consensus 242 l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 242 LEKLVALMEASLTYP 256 (350)
T ss_dssp TTTCCSCCEEECSCH
T ss_pred chhCcChhhCcCCCC
Confidence 889999999999764
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=9.6e-21 Score=166.16 Aligned_cols=164 Identities=19% Similarity=0.235 Sum_probs=105.5
Q ss_pred CCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeee
Q 037101 136 LPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFI 215 (395)
Q Consensus 136 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L 215 (395)
.++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|+++ .+|...+.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-------- 97 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFD-------- 97 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT--------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhc--------
Confidence 356777888888777655556777788888888888887655556677788888888887777 44433211
Q ss_pred ccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCccccc
Q 037101 216 NNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQ 295 (395)
Q Consensus 216 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 295 (395)
..++|++|++++|++. .++...+..+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 98 -------------~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 98 -------------KLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp -------------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred -------------CccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence 0034444444444444 3333333346677777777777775555556677777777777776653
Q ss_pred CchhccCCCCCCeeecccCcCCCCChhhhcCCCC
Q 037101 296 LPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPN 329 (395)
Q Consensus 296 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 329 (395)
.+++|+.|+++.|+++|.+|..++.++.
T Consensus 163 ------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 2446777777777777777777665554
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=4.5e-20 Score=164.54 Aligned_cols=166 Identities=19% Similarity=0.208 Sum_probs=97.2
Q ss_pred CCCCCCCCCCCCcceeeeCCCCCCCccccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCC
Q 037101 85 ITKTWVGSDICNYKGFYCESPPDNETAIAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLY 164 (395)
Q Consensus 85 ~~~~W~~~~~C~w~gv~c~~~~~~~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 164 (395)
....|.+...|+|.+|.|... .+.. ++..+ .++|++|++++|.+++..|..|..+++|+
T Consensus 9 ~~~~~~~~~~Cs~~~v~c~~~-----------------~l~~--ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 67 (229)
T 3e6j_A 9 HSAACPSQCSCSGTTVDCRSK-----------------RHAS--VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLK 67 (229)
T ss_dssp --CCCCTTCEEETTEEECTTS-----------------CCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hhccCCCCCEEeCCEeEccCC-----------------CcCc--cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCc
Confidence 334566778899999999641 1221 12111 14555555555555554455555555555
Q ss_pred EEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEcccCCCC
Q 037101 165 ELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFI 244 (395)
Q Consensus 165 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 244 (395)
+|+|++|.++...+..|..+++|++|+|++|+++
T Consensus 68 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~---------------------------------------------- 101 (229)
T 3e6j_A 68 ELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT---------------------------------------------- 101 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----------------------------------------------
T ss_pred EEECCCCCCCCcChhhcccCCCcCEEECCCCcCC----------------------------------------------
Confidence 5555555554333334445555555555555444
Q ss_pred CCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCC
Q 037101 245 GPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGM 319 (395)
Q Consensus 245 ~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 319 (395)
.++...+..+++|++|++++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|++|++++|.+...
T Consensus 102 -~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred -ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 222222334677777888877777 6677777777777777777777755555677777777777777777543
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=5.5e-20 Score=169.98 Aligned_cols=189 Identities=20% Similarity=0.280 Sum_probs=129.8
Q ss_pred CcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccc
Q 037101 139 IALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNN 218 (395)
Q Consensus 139 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n 218 (395)
+..+.+..+.+.+..+ +..+++|++|++++|.+.. ++ .+..+++|++|++++|+++ .++.....++|++|++++|
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~-~~~~l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCcccccc--hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccC-CCcccccCCCCCEEECCCC
Confidence 3344555666554322 4568889999999999984 44 4888999999999999998 4555333378888888888
Q ss_pred cCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCc
Q 037101 219 GFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLP 297 (395)
Q Consensus 219 ~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 297 (395)
.+.+ ++. +.. ++|++|++++|++.+ ++ .+ ..+++|++|++++|++++. ..+..+++|++|++++|++++..+
T Consensus 101 ~l~~-~~~-l~~l~~L~~L~L~~n~i~~-~~-~l-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 101 KVKD-LSS-LKDLKKLKSLSLEHNGISD-IN-GL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CCCC-GGG-GTTCTTCCEEECTTSCCCC-CG-GG-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred cCCC-Chh-hccCCCCCEEECCCCcCCC-Ch-hh-cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 8764 333 333 677777777777763 43 22 3367777777777777743 456777777777777777774433
Q ss_pred hhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCccccc
Q 037101 298 FSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHA 343 (395)
Q Consensus 298 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 343 (395)
+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.++..
T Consensus 174 --l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred --hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 6677777777777777755 33 366777777777777777654
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.2e-19 Score=159.25 Aligned_cols=177 Identities=19% Similarity=0.176 Sum_probs=135.6
Q ss_pred EECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccccCc
Q 037101 142 FHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFM 221 (395)
Q Consensus 142 L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~ 221 (395)
++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|+++ .+|...+
T Consensus 12 v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~--------------- 72 (208)
T 2o6s_A 12 VECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVF--------------- 72 (208)
T ss_dssp EECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTT---------------
T ss_pred EEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhc---------------
Confidence 344444444 334333 358899999999998776677888999999999999887 4443321
Q ss_pred ccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhc
Q 037101 222 IKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSL 300 (395)
Q Consensus 222 ~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l 300 (395)
.. ++|++|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+
T Consensus 73 -------~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 144 (208)
T 2o6s_A 73 -------NKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144 (208)
T ss_dssp -------TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred -------CCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh
Confidence 22 46666666666666 5555555568999999999999997777778999999999999999997766678
Q ss_pred cCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC-CCcCCCC
Q 037101 301 ACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP-LCRFLIE 352 (395)
Q Consensus 301 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~ 352 (395)
..+++|++|++++|.+.+ .+++|+.|+++.|.+++..| .++.++.
T Consensus 145 ~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 999999999999998854 45789999999999998766 4666554
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=160.85 Aligned_cols=133 Identities=22% Similarity=0.193 Sum_probs=88.1
Q ss_pred ccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecc
Q 037101 233 ILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFA 312 (395)
Q Consensus 233 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 312 (395)
+++|++++|.+.+..+...+..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 44555555555533333334446677777777777775555567777777777777777776666667777777777777
Q ss_pred cCcCCCCChhhhcCCCCCcEEEccCCcccccCC-CCcCCCCCCEEEccCCCCCC
Q 037101 313 NNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP-LCRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 313 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~i~~ 365 (395)
+|++++..|..|..+++|+.|+|++|.++++++ .+..+++|++|+|++|.+..
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 777766666667777777777777777777644 36667777777777776654
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=3e-19 Score=165.08 Aligned_cols=170 Identities=19% Similarity=0.288 Sum_probs=120.6
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLD 191 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 191 (395)
.+++.|++++|.+.. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 46 ~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred CcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 367777777777665 22 25666777777777777765333 6677777777777777763 33 366677777777
Q ss_pred eecCcCCCCCCchhccCCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCccc
Q 037101 192 IRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGC 271 (395)
Q Consensus 192 Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~ 271 (395)
+++|+++ .++... ..++|++|++++|.+. .+ .. +..+++|++|++++|++++.
T Consensus 119 L~~n~i~-~~~~l~-----------------------~l~~L~~L~l~~n~l~-~~-~~-l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 119 LEHNGIS-DINGLV-----------------------HLPQLESLYLGNNKIT-DI-TV-LSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp CTTSCCC-CCGGGG-----------------------GCTTCCEEECCSSCCC-CC-GG-GGGCTTCSEEECCSSCCCCC
T ss_pred CCCCcCC-CChhhc-----------------------CCCCCCEEEccCCcCC-cc-hh-hccCCCCCEEEccCCccccc
Confidence 7777666 232211 1146677777777766 33 23 34489999999999999965
Q ss_pred CchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCC
Q 037101 272 LPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGM 319 (395)
Q Consensus 272 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 319 (395)
.+ +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++...
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred hh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 54 8999999999999999994 55 488999999999999998664
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=2.8e-19 Score=158.31 Aligned_cols=133 Identities=20% Similarity=0.160 Sum_probs=91.0
Q ss_pred cccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeec
Q 037101 232 HILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNF 311 (395)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 311 (395)
++++|++++|.+. .++...+..+++|++|++++|++++..|..|.++++|++|+|++|+|+...+..|..+++|++|+|
T Consensus 33 ~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 4555555555555 344333444677777777777777666777777777777777777777544445667777777777
Q ss_pred ccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-CcCCCCCCEEEccCCCCCC
Q 037101 312 ANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 312 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~i~~ 365 (395)
++|++.+..+..|..+++|+.|+|++|.++++++. +..+++|++|+|++|.+..
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 77777776677777777777777777777776654 6677777777777776643
No 102
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=1.1e-20 Score=195.59 Aligned_cols=263 Identities=15% Similarity=0.145 Sum_probs=107.4
Q ss_pred hhhhhHHHHHHHHHHhccCCCCCCCCCCCC--CCCCCcceeeeCCCCCCCccccEEEEEcCCCCcCCCCcccccCCCCCC
Q 037101 62 QRLAVVYPIIQEFKSIITSDPLGITKTWVG--SDICNYKGFYCESPPDNETAIAVASIDFNGFQLSAPTLDGFLDQLPDI 139 (395)
Q Consensus 62 ~~~~~~~~~l~~~k~~~~~~~~~~~~~W~~--~~~C~w~gv~c~~~~~~~~~~~l~~L~Ls~~~l~~~~~~~~l~~l~~L 139 (395)
...+.++++++.+........+.....|.. ...+.|.++.+.. .+++.|+|.++.+.. .+. ..|
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-------~~~~~l~L~~n~~~~--~~~-----~~l 193 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST-------PLTPKIELFANGKDE--ANQ-----ALL 193 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC-------CccceEEeeCCCCCc--chh-----hHh
Confidence 345577788888888876555555566752 2345787776654 378899998888776 122 123
Q ss_pred cEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhcc-CCCCeeeeccc
Q 037101 140 ALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT-QNLDFLFINNN 218 (395)
Q Consensus 140 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n 218 (395)
+.++|+.+.+.+ ++++.|.+. ..+..+..++.|+.|+|++|.+. .+|..++. ++|++|+|++|
T Consensus 194 ~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N 257 (727)
T 4b8c_D 194 QHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN 257 (727)
T ss_dssp -------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS
T ss_pred hcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC
Confidence 344444443332 222333333 33444445555555555555554 44444333 44555555555
Q ss_pred cCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCc
Q 037101 219 GFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLP 297 (395)
Q Consensus 219 ~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 297 (395)
.++ .+|..++. ++|++|+|++|.++ .+|..+.. +++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|
T Consensus 258 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 258 SLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG-GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred cCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC-CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence 554 45555544 66777777777777 67776654 788888888888887 777778888888888888888888777
Q ss_pred hhccCCCC-CCeeecccCcCCCCChhhhcCCCCCcEEEccCC--------cccccCC-CCcCCCCCCEEEccCCCCC
Q 037101 298 FSLACLEK-VEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDN--------YFTHAGP-LCRFLIEKGVLDVRNNCIP 364 (395)
Q Consensus 298 ~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N--------~l~~~~~-~~~~l~~L~~L~L~~N~i~ 364 (395)
..+..+.. +..++|++|.+++.+|. .|+.|+++.| .+.+..+ .+..+..+....+++|.+.
T Consensus 334 ~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 334 KILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred HHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 77654422 23478888888887764 4556666666 2222222 1344555566677777665
No 103
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.80 E-value=1.4e-22 Score=203.81 Aligned_cols=189 Identities=17% Similarity=0.200 Sum_probs=115.9
Q ss_pred CCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCc-------------CCCCCCchhcc-CCCCeee-eccc----
Q 037101 158 AKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNY-------------FTGSVPPQIFT-QNLDFLF-INNN---- 218 (395)
Q Consensus 158 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~~~~-~~L~~L~-L~~n---- 218 (395)
..+++|+.|+|++|+++ .+|..++++++|++|++++|. +.+..|..+.. ++|+.|+ ++.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34566666666666665 566666666666666665543 22233332222 4444444 3333
Q ss_pred ---------cCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccC
Q 037101 219 ---------GFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGD 289 (395)
Q Consensus 219 ---------~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 289 (395)
.+... + ...|+.|++++|.++ .+|. +..+++|++|++++|.++ .+|..++.+++|+.|+|++
T Consensus 425 L~~l~l~~n~i~~l-~----~~~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 425 LRSKFLLENSVLKM-E----YADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHH-H----HTTCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred hhhhhhhccccccc-C----ccCceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence 33211 1 124667777777776 4564 334677777777777777 6666777777777777777
Q ss_pred CcccccCchhccCCCCCCeeecccCcCCCCC-hhhhcCCCCCcEEEccCCcccccCCCC----cCCCCCCEEEc
Q 037101 290 NQLTGQLPFSLACLEKVEQLNFANNLLFGMV-PEAVCGLPNLLHFSLSDNYFTHAGPLC----RFLIEKGVLDV 358 (395)
Q Consensus 290 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~~----~~l~~L~~L~L 358 (395)
|+|++ +| .+..+++|++|+|++|++++.. |..+..+++|+.|+|++|.+++.++.. ..+++|+.|++
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77774 55 6677777777777777776655 677777777777777777777765542 23667776654
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=2e-19 Score=182.03 Aligned_cols=192 Identities=20% Similarity=0.275 Sum_probs=150.6
Q ss_pred CCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeecc
Q 037101 138 DIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINN 217 (395)
Q Consensus 138 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~ 217 (395)
.+..+.+..+.+....+ +..+++|++|++++|.+. .++ .+..+++|++|+|++|+++ .++.....++|+.|+|++
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~-~~~~l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCC-CCGGGGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCC-CChhhccCCCCCEEECcC
Confidence 44555666666665433 567889999999999998 444 5899999999999999998 555533448999999999
Q ss_pred ccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccC
Q 037101 218 NGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQL 296 (395)
Q Consensus 218 n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 296 (395)
|.+.+ ++ .+.. ++|++|+|++|.+. .++. +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..
T Consensus 97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 97 NKIKD-LS-SLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SCCCC-CT-TSTTCTTCCEEECTTSCCC-CCGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCC-Ch-hhccCCCCCEEEecCCCCC-CCcc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 99874 44 3444 88999999999988 4543 33488899999999988854 56888899999999999988655
Q ss_pred chhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC
Q 037101 297 PFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP 345 (395)
Q Consensus 297 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 345 (395)
| +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++.+.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 5 78888999999999988664 358888899999999998887644
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=5.1e-19 Score=153.86 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=74.0
Q ss_pred CCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEE
Q 037101 255 FSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFS 334 (395)
Q Consensus 255 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 334 (395)
+++|++|++++|.+++..+..++.+++|++|++++|++++..|..+..+++|++|++++|.+.+.++ .+..+++|+.|+
T Consensus 87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~ 165 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLN 165 (197)
T ss_dssp CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEE
T ss_pred CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEE
Confidence 5666666666666665566666777777777777777776666677777777777777776224444 567777777777
Q ss_pred ccCCcccccCCCCcCCCCCCEEEccCCCCCC
Q 037101 335 LSDNYFTHAGPLCRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 335 L~~N~l~~~~~~~~~l~~L~~L~L~~N~i~~ 365 (395)
+++|.+++++ .+..+++|++|++++|+|.+
T Consensus 166 l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 166 IQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred CCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 7777777654 56777778888888877654
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=2.3e-19 Score=170.93 Aligned_cols=173 Identities=18% Similarity=0.222 Sum_probs=84.8
Q ss_pred CEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhc---cCCCCeeeeccccCcccCCccccC-ccccEEEcc
Q 037101 164 YELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIF---TQNLDFLFINNNGFMIKLPDNIGS-THILFLTLA 239 (395)
Q Consensus 164 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~---~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~ 239 (395)
+.++++++.++ .+|..+. ..++.|+|++|+++ .++...+ .++|++|++++|++.+..+..+.. ++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 57778887777 4665443 45777777777777 3333322 255666666666555443333333 445555555
Q ss_pred cCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhc---cCCCCCCeeecccCcC
Q 037101 240 NNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSL---ACLEKVEQLNFANNLL 316 (395)
Q Consensus 240 ~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l 316 (395)
+|++. .++...+..+++|++|+|++|++++..+..|..+++|+.|+|++|+|++..+..+ ..+++|++|+|++|++
T Consensus 97 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 55544 3333333334455555555555544444444445555555555555442222222 2344445555555544
Q ss_pred CCCChhhhcCCCC--CcEEEccCCccc
Q 037101 317 FGMVPEAVCGLPN--LLHFSLSDNYFT 341 (395)
Q Consensus 317 ~~~~p~~~~~l~~--L~~L~L~~N~l~ 341 (395)
++..+..+..++. ++.|+|++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 4433334444443 244444444443
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=9.1e-19 Score=155.03 Aligned_cols=154 Identities=23% Similarity=0.241 Sum_probs=99.0
Q ss_pred CEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCC
Q 037101 164 YELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNK 242 (395)
Q Consensus 164 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~ 242 (395)
+++++++|.++ .+|..+. ..+++|+|++|++++..+... +.. ++|++|++++|+
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~----------------------~~~l~~L~~L~L~~N~ 68 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGI----------------------FKKLPQLRKINFSNNK 68 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCC----------------------GGGCTTCCEEECCSSC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhh----------------------hccCCCCCEEECCCCc
Confidence 46777777776 4555432 345666777666663323221 222 455555555555
Q ss_pred CCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChh
Q 037101 243 FIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPE 322 (395)
Q Consensus 243 l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 322 (395)
+. .++...+..+++|++|++++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|++++..|.
T Consensus 69 i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 69 IT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp CC-EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred CC-EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 55 33333334467777777777777766666677777777777777777766677777777777777777777776677
Q ss_pred hhcCCCCCcEEEccCCccccc
Q 037101 323 AVCGLPNLLHFSLSDNYFTHA 343 (395)
Q Consensus 323 ~~~~l~~L~~L~L~~N~l~~~ 343 (395)
.|..+++|+.|++++|.+...
T Consensus 148 ~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTTTCTTCCEEECCSCCEECS
T ss_pred HhcCCCCCCEEEecCcCCcCC
Confidence 777777777777777777643
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1.3e-18 Score=176.15 Aligned_cols=172 Identities=21% Similarity=0.300 Sum_probs=105.8
Q ss_pred CCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeee
Q 037101 136 LPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFI 215 (395)
Q Consensus 136 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L 215 (395)
+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.++ .+|.....++|+.|+|
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCTTSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CChhhccCCCCCEEEe
Confidence 3344444444444432 11 24444444444444444443222 444444444444444444 2332222244555555
Q ss_pred ccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCccccc
Q 037101 216 NNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQ 295 (395)
Q Consensus 216 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 295 (395)
++|.+.+ ++.....++|+.|+|++|.+.+ + .. +..+++|++|+|++|.+.+..| +..+++|+.|+|++|.|++
T Consensus 117 s~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~-l-~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~- 189 (605)
T 1m9s_A 117 EHNGISD-INGLVHLPQLESLYLGNNKITD-I-TV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 189 (605)
T ss_dssp TTSCCCC-CGGGGGCTTCSEEECCSSCCCC-C-GG-GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred cCCCCCC-CccccCCCccCEEECCCCccCC-c-hh-hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-
Confidence 5554442 2221222677777777777773 4 23 4458999999999999997666 8999999999999999995
Q ss_pred CchhccCCCCCCeeecccCcCCCCC
Q 037101 296 LPFSLACLEKVEQLNFANNLLFGMV 320 (395)
Q Consensus 296 ~p~~l~~l~~L~~L~Ls~N~l~~~~ 320 (395)
++ .+..+++|+.|+|++|.+.+..
T Consensus 190 l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 190 LR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred Ch-HHccCCCCCEEEccCCcCcCCc
Confidence 44 6889999999999999997653
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=6.6e-19 Score=167.79 Aligned_cols=175 Identities=22% Similarity=0.243 Sum_probs=130.2
Q ss_pred EEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccC-CCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeec
Q 037101 116 SIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIA-KLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRF 194 (395)
Q Consensus 116 ~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 194 (395)
.++++++++.. +|..+ .+.++.|++++|.+++..+..+. .+++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 22 ~l~c~~~~l~~--iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLPN--VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCSS--CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcCc--cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56777777776 34323 24588899999999877777776 889999999999999877777888999999999999
Q ss_pred CcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCc
Q 037101 195 NYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLP 273 (395)
Q Consensus 195 n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~ 273 (395)
|+++ .++... +.. ++|++|++++|.+. .++...+..+++|++|+|++|++++..+
T Consensus 98 N~l~-~~~~~~----------------------~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 153 (361)
T 2xot_A 98 NHLH-TLDEFL----------------------FSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPV 153 (361)
T ss_dssp SCCC-EECTTT----------------------TTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred CcCC-cCCHHH----------------------hCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCH
Confidence 9887 443322 112 45666666666665 3333334458999999999999995444
Q ss_pred hhh---cCCCCCcEEEccCCcccccCchhccCCCC--CCeeecccCcCCC
Q 037101 274 YEI---GYLKEAVVFDVGDNQLTGQLPFSLACLEK--VEQLNFANNLLFG 318 (395)
Q Consensus 274 ~~~---~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~ 318 (395)
..+ ..+++|+.|+|++|+|++..+..+..++. ++.|+|++|.+..
T Consensus 154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 444 57999999999999999666677887876 4899999999854
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2.6e-18 Score=153.02 Aligned_cols=152 Identities=26% Similarity=0.265 Sum_probs=86.4
Q ss_pred CcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccC
Q 037101 187 LEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVN 265 (395)
Q Consensus 187 L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~ 265 (395)
.+.++++++.++ .+|..+. ++|++|++++|.+.+..+..+.. ++|++|++++|++. .++...+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence 456777777776 6665443 56666666666666555554444 55566666665554 44444444455555555555
Q ss_pred CcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccc
Q 037101 266 NQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTH 342 (395)
Q Consensus 266 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 342 (395)
|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++.+..+..|..+++|+.|++++|.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 5555444444555555555555555555 455555555555555555555554444445555555555555555543
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.8e-18 Score=153.05 Aligned_cols=152 Identities=15% Similarity=0.217 Sum_probs=90.7
Q ss_pred CEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCC
Q 037101 164 YELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNK 242 (395)
Q Consensus 164 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~ 242 (395)
+.++++++.++ .+|..+. ++|++|++++|+++ .++. ..+.. ++|++|++++|+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~----------------------~~~~~l~~L~~L~Ls~N~ 67 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPP----------------------GAFSPYKKLRRIDLSNNQ 67 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECT----------------------TSSTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCH----------------------hHhhCCCCCCEEECCCCc
Confidence 46666666666 4554432 56666666666666 3332 22222 455555555555
Q ss_pred CCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChh
Q 037101 243 FIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPE 322 (395)
Q Consensus 243 l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 322 (395)
+.+..|..+ ..+++|++|++++|+++...+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+.
T Consensus 68 i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 68 ISELAPDAF-QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp CCEECTTTT-TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCCcCHHHh-hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 553223332 3366666666666666644444456666677777777776666666666667777777777776666555
Q ss_pred hhcCCCCCcEEEccCCcccc
Q 037101 323 AVCGLPNLLHFSLSDNYFTH 342 (395)
Q Consensus 323 ~~~~l~~L~~L~L~~N~l~~ 342 (395)
.|..+++|+.|++++|.+..
T Consensus 147 ~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 147 TFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTCTTCCEEECCSSCEEC
T ss_pred HHhCCCCCCEEEeCCCCcCC
Confidence 66666777777777776643
No 112
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=3.2e-20 Score=188.11 Aligned_cols=136 Identities=15% Similarity=0.025 Sum_probs=100.5
Q ss_pred ccccEEEcccCCCCCCCchHHHhcCCCCcEEEcc----CCcCccc-----CchhhcCCCCCcEEEccCCc--ccccCchh
Q 037101 231 THILFLTLANNKFIGPLPRSIFKAFSELTEVLLV----NNQLTGC-----LPYEIGYLKEAVVFDVGDNQ--LTGQLPFS 299 (395)
Q Consensus 231 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~ 299 (395)
++|++|++..|.+++..+..+...+++|++|+++ .|.+++. ++..+.++++|++|+++.|. +++..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 6788888877777766666666557788888885 5566643 33446678888888887543 55544444
Q ss_pred cc-CCCCCCeeecccCcCCCC-ChhhhcCCCCCcEEEccCCccccc-CCC-CcCCCCCCEEEccCCCCCCC
Q 037101 300 LA-CLEKVEQLNFANNLLFGM-VPEAVCGLPNLLHFSLSDNYFTHA-GPL-CRFLIEKGVLDVRNNCIPDL 366 (395)
Q Consensus 300 l~-~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~-~~~-~~~l~~L~~L~L~~N~i~~l 366 (395)
+. .+++|++|++++|.+++. ++..+..+++|+.|++++|.+++. .+. +..+++|++|+|++|++++.
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 43 478899999999998763 455668899999999999998754 222 45789999999999998874
No 113
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=2.7e-20 Score=188.62 Aligned_cols=252 Identities=13% Similarity=0.064 Sum_probs=138.6
Q ss_pred cEEEEEcCCCCcCCCC---cccccCCCCCCcEEECCCCCCCCC----CccccCCCCCCCEEEccCCCCCCCcchhhcCCC
Q 037101 113 AVASIDFNGFQLSAPT---LDGFLDQLPDIALFHANSNNFAGT----ISSNIAKLPYLYELDISNNKFSGPFPAAVLGMN 185 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~---~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 185 (395)
+++.|+|++|.+.+.. +...+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+ ++..+..++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~ 243 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA 243 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh
Confidence 5666666666554421 222344556666666666665422 23333455666666666665542 344444444
Q ss_pred CCcEEEeecCcC--------------------------CCCCCchhcc-CCCCeeeeccccCcccCCcc-cc--------
Q 037101 186 NLEFLDIRFNYF--------------------------TGSVPPQIFT-QNLDFLFINNNGFMIKLPDN-IG-------- 229 (395)
Q Consensus 186 ~L~~L~Ls~n~l--------------------------~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~-~~-------- 229 (395)
+|++|+++.+.. .+.+|..+.. ++|++|++++|.+.+..... +.
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L 323 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL 323 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEE
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEE
Confidence 444444442110 0112222211 46666666666643221111 11
Q ss_pred ----------------C-ccccEEEccc-----------CCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcC-CC
Q 037101 230 ----------------S-THILFLTLAN-----------NKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGY-LK 280 (395)
Q Consensus 230 ----------------~-~~L~~L~l~~-----------n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~ 280 (395)
. ++|++|++++ +.+++.....+...+++|++|++..|.+++..+..+.. ++
T Consensus 324 ~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 403 (592)
T 3ogk_B 324 ETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK 403 (592)
T ss_dssp EEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCC
T ss_pred eccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCC
Confidence 1 4566666662 34433222333344667777777666666555555544 67
Q ss_pred CCcEEEcc----CCccccc-----CchhccCCCCCCeeecccCc--CCCCChhhhc-CCCCCcEEEccCCcccccC-C-C
Q 037101 281 EAVVFDVG----DNQLTGQ-----LPFSLACLEKVEQLNFANNL--LFGMVPEAVC-GLPNLLHFSLSDNYFTHAG-P-L 346 (395)
Q Consensus 281 ~L~~L~Ls----~n~l~~~-----~p~~l~~l~~L~~L~Ls~N~--l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~-~-~ 346 (395)
+|+.|+++ .|.+++. ++..+..+++|++|++++|. +++..+..+. .+++|+.|++++|.+++.. + .
T Consensus 404 ~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 483 (592)
T 3ogk_B 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF 483 (592)
T ss_dssp SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH
T ss_pred CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH
Confidence 77777775 5566642 33335567788888886433 5554444443 4788999999999887632 2 3
Q ss_pred CcCCCCCCEEEccCCCCCC
Q 037101 347 CRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 347 ~~~l~~L~~L~L~~N~i~~ 365 (395)
+..+++|++|+|++|.|++
T Consensus 484 ~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp HTCCTTCCEEEEESCCCBH
T ss_pred HhcCcccCeeeccCCCCcH
Confidence 5678999999999998764
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=8.3e-19 Score=159.63 Aligned_cols=172 Identities=17% Similarity=0.211 Sum_probs=115.8
Q ss_pred CCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeee
Q 037101 136 LPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFI 215 (395)
Q Consensus 136 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L 215 (395)
+.++..++++.+.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|+++ .++.....
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~l~~l-------- 84 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSPLKDL-------- 84 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGGGTTC--------
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChhhccC--------
Confidence 344555666666665332 3566677777777777776 344 4666777777777777776 33331111
Q ss_pred ccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCccccc
Q 037101 216 NNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQ 295 (395)
Q Consensus 216 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 295 (395)
++|++|++++|++. .++... .++|++|++++|++++ ++ .+..+++|+.|++++|++++
T Consensus 85 ---------------~~L~~L~L~~N~l~-~l~~~~---~~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~- 142 (263)
T 1xeu_A 85 ---------------TKLEELSVNRNRLK-NLNGIP---SACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS- 142 (263)
T ss_dssp ---------------SSCCEEECCSSCCS-CCTTCC---CSSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-
T ss_pred ---------------CCCCEEECCCCccC-CcCccc---cCcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-
Confidence 34555555555554 233211 1688888888888885 33 57888888888888888884
Q ss_pred CchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC
Q 037101 296 LPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP 345 (395)
Q Consensus 296 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 345 (395)
++ .+..+++|++|++++|++.+. ..+..+++|+.|++++|.++..+.
T Consensus 143 ~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 143 IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 34 577888888888888888765 667888888888888888877643
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=2.9e-21 Score=194.35 Aligned_cols=180 Identities=18% Similarity=0.171 Sum_probs=149.3
Q ss_pred cCCCCCcEEEeecCcCCCCCCchhcc-CCCCeeeecccc-------------CcccCCccccC-ccccEEE-cccCCCCC
Q 037101 182 LGMNNLEFLDIRFNYFTGSVPPQIFT-QNLDFLFINNNG-------------FMIKLPDNIGS-THILFLT-LANNKFIG 245 (395)
Q Consensus 182 ~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~-------------l~~~~~~~~~~-~~L~~L~-l~~n~l~~ 245 (395)
...++|+.|+|++|+++ .+|..+.. ++|+.|++++|. ..+..|..++. ++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56899999999999998 89988877 889999987775 45555666555 7788887 5655433
Q ss_pred CCchHHH------h-cCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCC
Q 037101 246 PLPRSIF------K-AFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFG 318 (395)
Q Consensus 246 ~~p~~~~------~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 318 (395)
.++.... . ....|+.|++++|.+++ +|. ++.+++|+.|+|++|+|+ .+|..+..+++|++|+|++|.+++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 2221100 0 02369999999999995 676 999999999999999999 889999999999999999999977
Q ss_pred CChhhhcCCCCCcEEEccCCccccc--CCCCcCCCCCCEEEccCCCCCCCCC
Q 037101 319 MVPEAVCGLPNLLHFSLSDNYFTHA--GPLCRFLIEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 319 ~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~L~~N~i~~lp~ 368 (395)
+| .+..+++|+.|+|++|.|++. +..+..+++|+.|+|++|.|+++|.
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 67 899999999999999999998 4569999999999999999999874
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1e-18 Score=158.96 Aligned_cols=166 Identities=19% Similarity=0.247 Sum_probs=106.0
Q ss_pred ccEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 037101 112 IAVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLD 191 (395)
Q Consensus 112 ~~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 191 (395)
.+++.++++++.+.+ ++ .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 19 ~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 356667788888776 33 47788999999999999884 45 68899999999999999996544 99999999999
Q ss_pred eecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcc
Q 037101 192 IRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTG 270 (395)
Q Consensus 192 Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~ 270 (395)
+++|+++ .+|.... ++|++|++++|++.+ ++ .+.. ++|++|++++|++. .++ . +..+++|++|++++|++++
T Consensus 92 L~~N~l~-~l~~~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~-~~~-~-l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLK-NLNGIPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLK-SIV-M-LGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCS-CCTTCCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCC-BCG-G-GGGCTTCCEEECTTSCCCB
T ss_pred CCCCccC-CcCcccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCC-CCh-H-HccCCCCCEEECCCCcCcc
Confidence 9999998 5665333 666666666666553 22 1222 44444444444444 222 1 2224444444444444443
Q ss_pred cCchhhcCCCCCcEEEccCCccc
Q 037101 271 CLPYEIGYLKEAVVFDVGDNQLT 293 (395)
Q Consensus 271 ~~~~~~~~l~~L~~L~Ls~n~l~ 293 (395)
. ..+..+++|+.|++++|.+.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEE
T ss_pred h--HHhccCCCCCEEeCCCCccc
Confidence 2 33444444444444444444
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.2e-17 Score=145.13 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=42.0
Q ss_pred CCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCc-ccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEE
Q 037101 255 FSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQ-LTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHF 333 (395)
Q Consensus 255 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 333 (395)
+++|++|++++|++++..+..+..+++|++|++++|+ ++ .+| .+..+++|++|++++|.+++. + .+..+++|+.|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L 186 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQL 186 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEE
Confidence 4445555555555554444455555555555555554 33 333 355555555555555555442 2 45555666666
Q ss_pred EccCCccc
Q 037101 334 SLSDNYFT 341 (395)
Q Consensus 334 ~L~~N~l~ 341 (395)
++++|+|.
T Consensus 187 ~l~~N~i~ 194 (197)
T 4ezg_A 187 YAFSQTIG 194 (197)
T ss_dssp EECBC---
T ss_pred EeeCcccC
Confidence 66666554
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=1.4e-17 Score=140.75 Aligned_cols=135 Identities=21% Similarity=0.204 Sum_probs=113.0
Q ss_pred ccccEEEcccCCCC-CCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCee
Q 037101 231 THILFLTLANNKFI-GPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQL 309 (395)
Q Consensus 231 ~~L~~L~l~~n~l~-~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 309 (395)
++|++|++++|.+. +.+|..+ ..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 46778888888776 5666653 3478899999999998855 678889999999999999997788888889999999
Q ss_pred ecccCcCCCCC-hhhhcCCCCCcEEEccCCcccccCC----CCcCCCCCCEEEccCCCCCCCCC
Q 037101 310 NFANNLLFGMV-PEAVCGLPNLLHFSLSDNYFTHAGP----LCRFLIEKGVLDVRNNCIPDLPF 368 (395)
Q Consensus 310 ~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L~~L~L~~N~i~~lp~ 368 (395)
++++|.+++.. +..+..+++|+.|++++|.+++.++ .+..+++|++|++++|.+..+|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 99999996642 2678899999999999999998887 57889999999999999998874
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=5e-17 Score=140.68 Aligned_cols=130 Identities=22% Similarity=0.287 Sum_probs=65.4
Q ss_pred CeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCC
Q 037101 211 DFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDN 290 (395)
Q Consensus 211 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 290 (395)
+++++++|++. .+|..+.. ++++|++++|.+.+..+...+..+++|++|++++|++++..|..|..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~-~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL-HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT-TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcC-cCccCCCC-CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 45555555553 44443332 55555555555542222222333555555555555555444555555555555555555
Q ss_pred cccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccc
Q 037101 291 QLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTH 342 (395)
Q Consensus 291 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 342 (395)
++++..+..+..+++|++|+|++|++++..|..|..+++|+.|++++|.+++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 5554444445555555555555555555545555555555555555555543
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=8e-17 Score=139.36 Aligned_cols=127 Identities=24% Similarity=0.276 Sum_probs=58.1
Q ss_pred cEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCch-hhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecc
Q 037101 234 LFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPY-EIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFA 312 (395)
Q Consensus 234 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 312 (395)
+++++++|.+. .+|..+. .++++|++++|++++..+. .+..+++|++|+|++|++++..|..+..+++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 34444444443 4443321 2444444444444433322 24444444444444444444444444444444444444
Q ss_pred cCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-CcCCCCCCEEEccCCCCC
Q 037101 313 NNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFLIEKGVLDVRNNCIP 364 (395)
Q Consensus 313 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~i~ 364 (395)
+|++++..+..|..+++|+.|+|++|++++.++. +..+++|++|+|++|.++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 4444444444444444444444444444444332 444444444444444444
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=1.9e-18 Score=175.04 Aligned_cols=133 Identities=14% Similarity=0.043 Sum_probs=92.5
Q ss_pred ccccEEEcccCCCCCCCchHHHhcCCCCcEEEcc--C----CcCccc-----CchhhcCCCCCcEEEccCCcccccCchh
Q 037101 231 THILFLTLANNKFIGPLPRSIFKAFSELTEVLLV--N----NQLTGC-----LPYEIGYLKEAVVFDVGDNQLTGQLPFS 299 (395)
Q Consensus 231 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 299 (395)
++|++|.+..|.+++.....+...+++|++|+++ + +.+++. ++..+..+++|+.|++++ .+++..+..
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 5677777777776655555555457788888887 3 444421 222356677888888876 565544445
Q ss_pred ccC-CCCCCeeecccCcCCCCChhhh-cCCCCCcEEEccCCcccccCC--CCcCCCCCCEEEccCCCCC
Q 037101 300 LAC-LEKVEQLNFANNLLFGMVPEAV-CGLPNLLHFSLSDNYFTHAGP--LCRFLIEKGVLDVRNNCIP 364 (395)
Q Consensus 300 l~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~L~~N~i~ 364 (395)
+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|.+++... ....+++|++|++++|+++
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 544 7889999999999876555444 568899999999999865433 2456889999999999874
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=136.80 Aligned_cols=126 Identities=23% Similarity=0.260 Sum_probs=84.0
Q ss_pred cEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeeccc
Q 037101 234 LFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFAN 313 (395)
Q Consensus 234 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 313 (395)
+++++++|.+. .+|..+ .++|++|++++|+++ .+|..+..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45556666655 555543 246677777777766 5556667777777777777777765556667777777777777
Q ss_pred CcCCCCChhhhcCCCCCcEEEccCCcccccCCC-CcCCCCCCEEEccCCCCC
Q 037101 314 NLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFLIEKGVLDVRNNCIP 364 (395)
Q Consensus 314 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~i~ 364 (395)
|++++..+..|..+++|+.|+|++|.|+.+++. +..+++|+.|+|++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666666677777777777777777766553 666777777777777654
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=2.2e-17 Score=170.94 Aligned_cols=195 Identities=18% Similarity=0.233 Sum_probs=120.6
Q ss_pred cEEEEEcCCCCcCCC--------CcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCC
Q 037101 113 AVASIDFNGFQLSAP--------TLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGM 184 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~--------~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 184 (395)
.+..++|+.+.+.+. ..+..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|..+
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 269 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL 269 (727)
T ss_dssp ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence 455566666655441 24667889999999999999998 67777889999999999999999 889999999
Q ss_pred CCCcEEEeecCcCCCCCCchhcc-CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEE
Q 037101 185 NNLEFLDIRFNYFTGSVPPQIFT-QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVL 262 (395)
Q Consensus 185 ~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~ 262 (395)
++|++|+|++|.|+ .+|..+.. ++|++|+|++|.+. .+|..++. ++|++|+|++|.+.+.+|..+......+..++
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence 99999999999999 88988766 89999999999997 78888877 89999999999999888877654222334578
Q ss_pred ccCCcCcccCchhhcCCCCCcEEEccCC--------cccccCchhccCCCCCCeeecccCcCC
Q 037101 263 LVNNQLTGCLPYEIGYLKEAVVFDVGDN--------QLTGQLPFSLACLEKVEQLNFANNLLF 317 (395)
Q Consensus 263 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--------~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 317 (395)
+++|.+++.+|.. |+.|+++.| .+.+..+..+..+..++...++.|.+.
T Consensus 348 l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 348 LRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred hccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 9999999887764 555667666 333333444555666677777777764
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=7.2e-16 Score=131.40 Aligned_cols=131 Identities=16% Similarity=0.063 Sum_probs=103.6
Q ss_pred cccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeec
Q 037101 232 HILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNF 311 (395)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 311 (395)
+.+.++++++++. .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 3456777777776 666543 357888888888888666666788888888888888888666666788888888898
Q ss_pred ccCcCCCCChhhhcCCCCCcEEEccCCcccccCCC-CcCCCCCCEEEccCCCCCCC
Q 037101 312 ANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFLIEKGVLDVRNNCIPDL 366 (395)
Q Consensus 312 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~i~~l 366 (395)
++|++++..+..+..+++|+.|++++|.++++++. +..+++|++|+|++|.+..-
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 88888877667778888899999998888887775 57788889999999888763
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=8.2e-17 Score=133.21 Aligned_cols=127 Identities=22% Similarity=0.239 Sum_probs=94.6
Q ss_pred ccccEEEcccCCCC-CCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCee
Q 037101 231 THILFLTLANNKFI-GPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQL 309 (395)
Q Consensus 231 ~~L~~L~l~~n~l~-~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 309 (395)
+++++|++++|.+. +.+|..+. .+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 46777777777776 55665433 377888888888888754 667778888888888888886677777778888888
Q ss_pred ecccCcCCCC-ChhhhcCCCCCcEEEccCCcccccCC----CCcCCCCCCEEEccC
Q 037101 310 NFANNLLFGM-VPEAVCGLPNLLHFSLSDNYFTHAGP----LCRFLIEKGVLDVRN 360 (395)
Q Consensus 310 ~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L~~L~L~~ 360 (395)
++++|.+++. .+..+..+++|+.|++++|.+++.++ .+..+++|++||+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888663 34677888888888888888888766 367788888887763
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=4.4e-16 Score=131.51 Aligned_cols=136 Identities=20% Similarity=0.161 Sum_probs=77.6
Q ss_pred CCCCcEEEeecCcCC-CCCCchhcc-CCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEE
Q 037101 184 MNNLEFLDIRFNYFT-GSVPPQIFT-QNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEV 261 (395)
Q Consensus 184 l~~L~~L~Ls~n~l~-~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L 261 (395)
.++|++|++++|.++ +.+|..+.. ++|++|++++|.+.+. .. +..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~------------------------~~~l~~L~~L 76 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SN------------------------LPKLPKLKKL 76 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SS------------------------CCCCSSCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hh------------------------hccCCCCCEE
Confidence 356677777777665 455544222 4455555555544422 11 2235566666
Q ss_pred EccCCcCcccCchhhcCCCCCcEEEccCCcccccC-chhccCCCCCCeeecccCcCCCCCh---hhhcCCCCCcEEEccC
Q 037101 262 LLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQL-PFSLACLEKVEQLNFANNLLFGMVP---EAVCGLPNLLHFSLSD 337 (395)
Q Consensus 262 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~ 337 (395)
++++|.+++.+|..+..+++|++|++++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 77 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 66666666555555555666666666666666321 1456666666666666666655433 3566666777777776
Q ss_pred CcccccCC
Q 037101 338 NYFTHAGP 345 (395)
Q Consensus 338 N~l~~~~~ 345 (395)
|.+...+.
T Consensus 157 n~~~~~~~ 164 (168)
T 2ell_A 157 REDQEAPD 164 (168)
T ss_dssp TTSCBCCS
T ss_pred CChhhccc
Confidence 66655443
No 127
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=1.8e-17 Score=167.83 Aligned_cols=110 Identities=17% Similarity=0.107 Sum_probs=69.6
Q ss_pred CCCCcEEEccCCcCcccCchhhc-CCCCCcEEEcc--C----Ccccc-----cCchhccCCCCCCeeecccCcCCCCChh
Q 037101 255 FSELTEVLLVNNQLTGCLPYEIG-YLKEAVVFDVG--D----NQLTG-----QLPFSLACLEKVEQLNFANNLLFGMVPE 322 (395)
Q Consensus 255 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 322 (395)
+++|++|.+..|.+++.....+. .+++|+.|+++ + +.+++ .++..+..+++|++|++++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 55555555555555544333343 46777777777 3 44441 1122245567777777766 55554444
Q ss_pred hhcC-CCCCcEEEccCCcccccCC-CC-cCCCCCCEEEccCCCCCC
Q 037101 323 AVCG-LPNLLHFSLSDNYFTHAGP-LC-RFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 323 ~~~~-l~~L~~L~L~~N~l~~~~~-~~-~~l~~L~~L~L~~N~i~~ 365 (395)
.+.. +++|+.|++++|.+++... .+ ..+++|++|+|++|.+++
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 5554 7889999999998876433 23 568899999999999854
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.1e-15 Score=130.53 Aligned_cols=110 Identities=19% Similarity=0.254 Sum_probs=88.6
Q ss_pred ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeee
Q 037101 231 THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLN 310 (395)
Q Consensus 231 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 310 (395)
.++++|++++|.+. .+|..+ ..+++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCc-hhHHHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 36677777777776 677544 4488888888888888877777788888899999999988877777888888899999
Q ss_pred cccCcCCCCChhhhcCCCCCcEEEccCCcccc
Q 037101 311 FANNLLFGMVPEAVCGLPNLLHFSLSDNYFTH 342 (395)
Q Consensus 311 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 342 (395)
|++|+++...+..|..+++|+.|++++|.+..
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99998877666678888889999999888764
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=3.7e-15 Score=139.91 Aligned_cols=235 Identities=15% Similarity=0.119 Sum_probs=128.4
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCC--------CCCCCEEEccCCCCCCCcchhhcCC
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAK--------LPYLYELDISNNKFSGPFPAAVLGM 184 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~--------l~~L~~L~Ls~n~l~~~~p~~l~~l 184 (395)
+++.|||++|++.. ....-+.++.++.+.+..+.+. ...|.+ +++|++|+|.+ .++..-..+|.++
T Consensus 50 ~L~~LdLs~n~i~~--~~~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 50 SLKVLDISNAEIKM--YSGKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp TCCEEEEEEEEECC--EEESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred cCeEEecCcceeEE--ecCccccccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 78888888888772 1111122222344444444222 234556 88888888888 7775666678888
Q ss_pred CCCcEEEeecCcCCCCCCchhccCCCCeeeecccc--C---cccCC-ccccC-c--------------------------
Q 037101 185 NNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNG--F---MIKLP-DNIGS-T-------------------------- 231 (395)
Q Consensus 185 ~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~--l---~~~~~-~~~~~-~-------------------------- 231 (395)
++|+.|+++.|.+. .++...|...+....+..+. . ...+. ..+.. .
T Consensus 124 ~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 124 DNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp TTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred cccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 88888888888887 67766666433333333222 1 00011 11111 2
Q ss_pred cccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCC-eee
Q 037101 232 HILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVE-QLN 310 (395)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~-~L~ 310 (395)
++..+.+.++-.. .-...+...+++|+++++++|+++......|.++.+|+.|++.+| ++...+..|.++.+|+ .++
T Consensus 203 ~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 203 DINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence 2333333332111 111112222556666666666666444455666666666666665 5544455566666666 666
Q ss_pred cccCcCCCCChhhhcCCCCCcEEEccCCcccccCC-CCcCCCCCCEEE
Q 037101 311 FANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP-LCRFLIEKGVLD 357 (395)
Q Consensus 311 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~ 357 (395)
+.+ .++...+..|.++++|+.++++.|.++.+.. .|.++++|+.+.
T Consensus 281 l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 281 LPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred Ecc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 666 4545445566666666666666666666655 366666666654
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=2.4e-15 Score=124.35 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=30.6
Q ss_pred CCCCcEEEccCCcCccc-CchhhcCCCCCcEEEccCCcccccCc---hhccCCCCCCeeecc
Q 037101 255 FSELTEVLLVNNQLTGC-LPYEIGYLKEAVVFDVGDNQLTGQLP---FSLACLEKVEQLNFA 312 (395)
Q Consensus 255 l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~Ls 312 (395)
+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55566666666555532 22445555566666666665553333 245555555555544
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=4.9e-15 Score=126.20 Aligned_cols=113 Identities=21% Similarity=0.259 Sum_probs=80.4
Q ss_pred cccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeec
Q 037101 232 HILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNF 311 (395)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 311 (395)
+|++|++++|++. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 5666666666665 444444444777888888888777555556677888888888888887665666777788888888
Q ss_pred ccCcCCCCChhhhcCCCCCcEEEccCCcccccCC
Q 037101 312 ANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP 345 (395)
Q Consensus 312 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 345 (395)
++|++++..+..+..+++|+.|++++|.+++..+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888876555556777888888888888776543
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=2.8e-15 Score=127.65 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=99.1
Q ss_pred ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeee
Q 037101 231 THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLN 310 (395)
Q Consensus 231 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 310 (395)
.+|++|++++|.+. .++. +....++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 56777777777777 4543 344344888888888888854 5678888888888888888855445557888888999
Q ss_pred cccCcCCCCChh--hhcCCCCCcEEEccCCcccccCCC----CcCCCCCCEEEccCCCCCC
Q 037101 311 FANNLLFGMVPE--AVCGLPNLLHFSLSDNYFTHAGPL----CRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 311 Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~L~~N~i~~ 365 (395)
+++|++. .+|. .+..+++|+.|++++|.++..+.. +..+++|++||+++|.+..
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9988884 4555 678888899999999988877663 7788889999988887654
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=9.4e-16 Score=143.98 Aligned_cols=212 Identities=9% Similarity=-0.013 Sum_probs=155.1
Q ss_pred EEEEcCCCCcCCCCcccccCC--------CCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCC
Q 037101 115 ASIDFNGFQLSAPTLDGFLDQ--------LPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNN 186 (395)
Q Consensus 115 ~~L~Ls~~~l~~~~~~~~l~~--------l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 186 (395)
..+.+..+.+ ...+|.+ +++|+.+++.+ .++..-..+|..+++|++|++++|.+....+.+|.++.+
T Consensus 75 ~~~~~~~~~I----~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~ 149 (329)
T 3sb4_A 75 KFYIYMANFV----PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVT 149 (329)
T ss_dssp CCEEECTTEE----CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTC
T ss_pred cccccccccc----CHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCc
Confidence 3344454433 3345667 89999999988 787666677999999999999999988667777888777
Q ss_pred CcEEEeecCcC---CCCCCchhc----------------------------cCCCCeeeeccccCcccCCcccc--Cccc
Q 037101 187 LEFLDIRFNYF---TGSVPPQIF----------------------------TQNLDFLFINNNGFMIKLPDNIG--STHI 233 (395)
Q Consensus 187 L~~L~Ls~n~l---~~~~p~~~~----------------------------~~~L~~L~L~~n~l~~~~~~~~~--~~~L 233 (395)
+.++.+..+.. ...+....+ ..++..+.+.++-.. .....+. .++|
T Consensus 150 l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L 228 (329)
T 3sb4_A 150 AIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNL 228 (329)
T ss_dssp EEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTC
T ss_pred eEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCC
Confidence 77776655221 001111111 133444444433111 0011111 2689
Q ss_pred cEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCc-EEEccCCcccccCchhccCCCCCCeeecc
Q 037101 234 LFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAV-VFDVGDNQLTGQLPFSLACLEKVEQLNFA 312 (395)
Q Consensus 234 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 312 (395)
+.+++.+|++. .++...|..+.+|+++++.+| ++......|.++.+|+ .+++.+ .++...+..|.++++|+.++++
T Consensus 229 ~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 229 VSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp CEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred eEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC
Confidence 99999999988 899988988999999999998 7756677899999999 999998 7776777899999999999999
Q ss_pred cCcCCCCChhhhcCCCCCcEEEc
Q 037101 313 NNLLFGMVPEAVCGLPNLLHFSL 335 (395)
Q Consensus 313 ~N~l~~~~p~~~~~l~~L~~L~L 335 (395)
+|.+....+..|.++++|+.++.
T Consensus 306 ~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 306 GDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp SSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCccCccchhhhcCCcchhhhcc
Confidence 99998888889999999999874
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=9.8e-17 Score=139.44 Aligned_cols=160 Identities=16% Similarity=0.126 Sum_probs=106.4
Q ss_pred hcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCc
Q 037101 181 VLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELT 259 (395)
Q Consensus 181 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~ 259 (395)
+.....++.++++.+.+.|.+|.. . .+|..+.. ++|++|++++|.+. .+| .+.. +++|+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l----------------~-~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~-l~~L~ 73 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPI----------------E-KMDATLSTLKACKHLALSTNNIE-KIS-SLSG-MENLR 73 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTC----------------C-CCHHHHHHTTTCSEEECSEEEES-CCC-CHHH-HTTCC
T ss_pred HHhcccccCcchheeEeccccCcH----------------h-hhhHHHhcCCCCCEEECCCCCCc-ccc-cccc-CCCCC
Confidence 444556666666666666555430 0 11113333 56666666666666 355 4443 77888
Q ss_pred EEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCCh-hhhcCCCCCcEEEccCC
Q 037101 260 EVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVP-EAVCGLPNLLHFSLSDN 338 (395)
Q Consensus 260 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N 338 (395)
+|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|+.|++++|
T Consensus 74 ~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 74 ILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred EEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 8888888877 566666677788888888888874 44 57777888888888888865322 46778888888888888
Q ss_pred cccccCCC-----------CcCCCCCCEEEccCCCCCC
Q 037101 339 YFTHAGPL-----------CRFLIEKGVLDVRNNCIPD 365 (395)
Q Consensus 339 ~l~~~~~~-----------~~~l~~L~~L~L~~N~i~~ 365 (395)
.+++..+. +..+++|+.|| +|.++.
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 88776443 67788888876 666654
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.9e-14 Score=122.39 Aligned_cols=130 Identities=21% Similarity=0.221 Sum_probs=62.7
Q ss_pred cCCCCCCCEEEccCCCCCCCcchhhcCCC-CCcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-cccc
Q 037101 157 IAKLPYLYELDISNNKFSGPFPAAVLGMN-NLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THIL 234 (395)
Q Consensus 157 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~ 234 (395)
+.++.+|++|++++|.++ .++. +..+. +|++|++++|.+++ + ..+.. ++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~------------------------~~l~~l~~L~ 67 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L------------------------DGFPLLRRLK 67 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E------------------------CCCCCCSSCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c------------------------cccccCCCCC
Confidence 445566666666666666 3333 33332 56666666665551 1 11111 3445
Q ss_pred EEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCch--hhcCCCCCcEEEccCCcccccCchh----ccCCCCCCe
Q 037101 235 FLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPY--EIGYLKEAVVFDVGDNQLTGQLPFS----LACLEKVEQ 308 (395)
Q Consensus 235 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~ 308 (395)
+|++++|.+. .+|..++..+++|++|++++|.+. .+|. .+..+++|+.|++++|.++ .+|.. +..+++|++
T Consensus 68 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 68 TLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp EEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred EEECCCCccc-ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 5555555544 334333333555555555555554 3333 4455555555555555554 33332 444444555
Q ss_pred eecccCcC
Q 037101 309 LNFANNLL 316 (395)
Q Consensus 309 L~Ls~N~l 316 (395)
|++++|.+
T Consensus 145 Ld~~~n~~ 152 (176)
T 1a9n_A 145 LDFQKVKL 152 (176)
T ss_dssp ETTEECCH
T ss_pred eCCCcCCH
Confidence 55444443
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=6.4e-14 Score=118.56 Aligned_cols=108 Identities=23% Similarity=0.222 Sum_probs=60.7
Q ss_pred cccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeec
Q 037101 232 HILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNF 311 (395)
Q Consensus 232 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 311 (395)
+.+.+++++|.+. .+|..+ .++|++|++++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 3455666666655 455433 245566666666666555555556666666666666665444444555556666666
Q ss_pred ccCcCCCCChhhhcCCCCCcEEEccCCccccc
Q 037101 312 ANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHA 343 (395)
Q Consensus 312 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 343 (395)
++|++++..+..|..+++|+.|+|++|.++..
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 66665554444455555666666666555543
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=4.1e-16 Score=135.46 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=55.8
Q ss_pred hhcCCCCCcEEEeecCcCCCCCCchhccCCCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCC
Q 037101 180 AVLGMNNLEFLDIRFNYFTGSVPPQIFTQNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSEL 258 (395)
Q Consensus 180 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L 258 (395)
.+..+++|++|++++|.++ .+|.....++|++|++++|.+. .+|..+.. ++|++|++++|++. .+| .+. .+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~-~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIE-KLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCCCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC-CHH-HHH-HHHHS
T ss_pred HHhcCCCCCEEECCCCCCc-cccccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC-cCC-ccc-cCCCC
Confidence 4444555555555555444 2331111144444444444443 23333322 45555555555555 344 233 25667
Q ss_pred cEEEccCCcCcccCc-hhhcCCCCCcEEEccCCcccccCc
Q 037101 259 TEVLLVNNQLTGCLP-YEIGYLKEAVVFDVGDNQLTGQLP 297 (395)
Q Consensus 259 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p 297 (395)
++|++++|++++..+ ..+..+++|++|++++|.+.+..|
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 777777776663222 355666666777776666664443
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=7.6e-14 Score=118.55 Aligned_cols=106 Identities=23% Similarity=0.232 Sum_probs=56.3
Q ss_pred cEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeeccc
Q 037101 234 LFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFAN 313 (395)
Q Consensus 234 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 313 (395)
+.+++++|.+. .+|..+ .++|++|++++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45556665554 555433 24555555555555555455555555555555555555543333345555555555555
Q ss_pred CcCCCCChhhhcCCCCCcEEEccCCccccc
Q 037101 314 NLLFGMVPEAVCGLPNLLHFSLSDNYFTHA 343 (395)
Q Consensus 314 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 343 (395)
|++.+..+..|..+++|+.|+|++|.+...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 555444333455555555555555555443
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.1e-13 Score=117.09 Aligned_cols=107 Identities=23% Similarity=0.141 Sum_probs=78.3
Q ss_pred CCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEcc
Q 037101 257 ELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLS 336 (395)
Q Consensus 257 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 336 (395)
..+++++++|.++ .+|..+ .++|++|+|++|+|++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4567777777777 455544 3677778888888776667777777778888888887776666667777778888888
Q ss_pred CCcccccCCC-CcCCCCCCEEEccCCCCCCC
Q 037101 337 DNYFTHAGPL-CRFLIEKGVLDVRNNCIPDL 366 (395)
Q Consensus 337 ~N~l~~~~~~-~~~l~~L~~L~L~~N~i~~l 366 (395)
+|+|+++++. +..+++|++|+|++|.++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 8877777664 67777788888888777654
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=9.1e-13 Score=126.81 Aligned_cols=225 Identities=12% Similarity=0.111 Sum_probs=171.5
Q ss_pred ccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhcc-C
Q 037101 130 DGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT-Q 208 (395)
Q Consensus 130 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~ 208 (395)
..+|.+. +|+.+.+..+ ++..-..+|.+ .+|+.+.+.. .++.....+|.++.+|+.+++..|.++ .++...|. .
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~ 203 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYA 203 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeec
Confidence 4456664 7888888765 65455566777 4699999986 666566678999999999999999988 77776665 7
Q ss_pred CCCeeeeccccCcccCCccccC-ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEc
Q 037101 209 NLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDV 287 (395)
Q Consensus 209 ~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 287 (395)
+|+.+.+..+ +...-...|.. .+|+.+++..+ +. .++...|.. .+|+.+.+. +.++......|.++++|+.+++
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEE
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEe
Confidence 8999998755 55333344444 68999999875 44 677777775 789999994 4566455778899999999999
Q ss_pred cCCccc-----ccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC-CCcCCCCCCEEEccCC
Q 037101 288 GDNQLT-----GQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP-LCRFLIEKGVLDVRNN 361 (395)
Q Consensus 288 s~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N 361 (395)
.+|.+. ...+..|.++++|+.+.+.+ .+.......|.++.+|+.+++..| ++.+.. .|..+ +|+.+++.+|
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 988765 35567788999999999984 576666778999999999999655 777655 48888 9999999999
Q ss_pred CCCCCC
Q 037101 362 CIPDLP 367 (395)
Q Consensus 362 ~i~~lp 367 (395)
.+..++
T Consensus 356 ~~~~l~ 361 (401)
T 4fdw_A 356 TPPQVF 361 (401)
T ss_dssp SCCBCC
T ss_pred CCcccc
Confidence 887765
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=9.2e-13 Score=126.79 Aligned_cols=240 Identities=15% Similarity=0.081 Sum_probs=184.0
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
+++.+++..+ +.. +-..+|.+ .+|+.+.+.. .+...-..+|.++++|+.+++++|+++......|. ..+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~-I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKS-IGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCE-ECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CccEEEeCCC-ccE-ECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 5777777655 433 34556666 4799999975 66655667899999999999999999954445555 689999999
Q ss_pred ecCcCCCCCCchhcc--CCCCeeeeccccCcccCCccccCccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCc-
Q 037101 193 RFNYFTGSVPPQIFT--QNLDFLFINNNGFMIKLPDNIGSTHILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLT- 269 (395)
Q Consensus 193 s~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~- 269 (395)
..+ ++ .++...|. .+|+.+.+..+ +...-...|...+|+.+.+. +.+. .++...|..+++|+++.+.+|.+.
T Consensus 211 p~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 211 PVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp CTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCC
T ss_pred CCc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccC
Confidence 854 66 77777665 68999999875 44333344444889999994 4455 677777888999999999988765
Q ss_pred ----ccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC
Q 037101 270 ----GCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP 345 (395)
Q Consensus 270 ----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 345 (395)
......|.++++|+.+++.+ .++......|.++.+|+.+.|..| ++......|.++ +|+.+++.+|.+..+..
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 34567889999999999994 577666778999999999999665 666667789999 99999999998887655
Q ss_pred C-CcCCC-CCCEEEccCCCCCC
Q 037101 346 L-CRFLI-EKGVLDVRNNCIPD 365 (395)
Q Consensus 346 ~-~~~l~-~L~~L~L~~N~i~~ 365 (395)
. |..++ +++.|.+..+.+..
T Consensus 363 ~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 363 KVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp SSCCCSCTTCCEEEECGGGHHH
T ss_pred ccccCCCCCccEEEeCHHHHHH
Confidence 4 66664 68888888775443
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2.1e-13 Score=115.81 Aligned_cols=107 Identities=22% Similarity=0.130 Sum_probs=76.9
Q ss_pred CcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccC
Q 037101 258 LTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSD 337 (395)
Q Consensus 258 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 337 (395)
-+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 366777777776 5555443 6777777777777766677777777777777777777665555567777777777777
Q ss_pred CcccccCCC-CcCCCCCCEEEccCCCCCCCC
Q 037101 338 NYFTHAGPL-CRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 338 N~l~~~~~~-~~~l~~L~~L~L~~N~i~~lp 367 (395)
|+|+++++. +..+++|++|+|++|.+...+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 777777665 677777777777777777654
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=4e-14 Score=134.97 Aligned_cols=160 Identities=17% Similarity=0.066 Sum_probs=95.4
Q ss_pred CCCCcEEEeecCcCCCCCCchhcc------CCCCeeeeccccCcccCCccccC--ccccEEEcccCCCCCCCchHHHh--
Q 037101 184 MNNLEFLDIRFNYFTGSVPPQIFT------QNLDFLFINNNGFMIKLPDNIGS--THILFLTLANNKFIGPLPRSIFK-- 253 (395)
Q Consensus 184 l~~L~~L~Ls~n~l~~~~p~~~~~------~~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~~p~~~~~-- 253 (395)
++.|++|+|++|.++......+.. .+|+.|+|++|.+.......+.. .+|++|++++|.+.......+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467888888888886322222111 46777777777765433333322 56777777777766433333221
Q ss_pred --cCCCCcEEEccCCcCccc----CchhhcCCCCCcEEEccCCccccc----CchhccCCCCCCeeecccCcCCCC----
Q 037101 254 --AFSELTEVLLVNNQLTGC----LPYEIGYLKEAVVFDVGDNQLTGQ----LPFSLACLEKVEQLNFANNLLFGM---- 319 (395)
Q Consensus 254 --~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~---- 319 (395)
..++|++|+|++|.++.. ++..+...++|++|+|++|.|++. ++..+...++|++|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 245677777777777532 333445667777777777776632 234455566777777777777543
Q ss_pred ChhhhcCCCCCcEEEccCCccccc
Q 037101 320 VPEAVCGLPNLLHFSLSDNYFTHA 343 (395)
Q Consensus 320 ~p~~~~~l~~L~~L~L~~N~l~~~ 343 (395)
+...+...++|++|+|++|.|++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 223344556777777777777654
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=3.6e-14 Score=135.32 Aligned_cols=110 Identities=16% Similarity=0.105 Sum_probs=71.4
Q ss_pred ccccEEEcccCCCCCC----CchHHHhcCCCCcEEEccCCcCccc----CchhhcCCCCCcEEEccCCccccc----Cch
Q 037101 231 THILFLTLANNKFIGP----LPRSIFKAFSELTEVLLVNNQLTGC----LPYEIGYLKEAVVFDVGDNQLTGQ----LPF 298 (395)
Q Consensus 231 ~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~ 298 (395)
++|++|++++|.+... ++..+. .+++|++|+|++|.+++. +...+...++|++|+|++|.|+.. +..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLA-GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHH-TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHh-cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 4677778887777532 222223 367899999999988743 345567778899999999998753 334
Q ss_pred hccCCCCCCeeecccCcCCCCChhhhcCCC-----CCcEEE--ccCCccc
Q 037101 299 SLACLEKVEQLNFANNLLFGMVPEAVCGLP-----NLLHFS--LSDNYFT 341 (395)
Q Consensus 299 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-----~L~~L~--L~~N~l~ 341 (395)
.+...++|++|+|++|.|++.....+..+. .|+.+. +..|.+.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 455678899999999998765554444332 155555 5555544
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=5e-12 Score=119.26 Aligned_cols=102 Identities=22% Similarity=0.211 Sum_probs=56.3
Q ss_pred EEcccC-CCCCCCchHHHhcCCCCcEEEccC-CcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeeccc
Q 037101 236 LTLANN-KFIGPLPRSIFKAFSELTEVLLVN-NQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFAN 313 (395)
Q Consensus 236 L~l~~n-~l~~~~p~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 313 (395)
++++++ .+. .+|. + ..+++|++|+|++ |.+++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~-l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT-S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC-C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455555 555 4555 2 2355566666654 566554445555666666666666666655555555566666666666
Q ss_pred CcCCCCChhhhcCCCCCcEEEccCCccc
Q 037101 314 NLLFGMVPEAVCGLPNLLHFSLSDNYFT 341 (395)
Q Consensus 314 N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 341 (395)
|+|++..+..|..++ |+.|+|++|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666544444444333 566666666554
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=1.8e-11 Score=115.35 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=69.7
Q ss_pred eeeeccc-cCcccCCccccC-ccccEEEccc-CCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEcc
Q 037101 212 FLFINNN-GFMIKLPDNIGS-THILFLTLAN-NKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVG 288 (395)
Q Consensus 212 ~L~L~~n-~l~~~~~~~~~~-~~L~~L~l~~-n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 288 (395)
.++++++ ++. .+|. +.. ++|++|+|++ |.+. .++...+..+++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566666 666 4666 555 6777777775 7776 4444444457777777777777777777777777777777777
Q ss_pred CCcccccCchhccCCCCCCeeecccCcCCC
Q 037101 289 DNQLTGQLPFSLACLEKVEQLNFANNLLFG 318 (395)
Q Consensus 289 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 318 (395)
+|+|++..+..+..++ |+.|+|++|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 7777754444455444 7777777777753
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=1.6e-10 Score=109.27 Aligned_cols=130 Identities=12% Similarity=0.116 Sum_probs=73.5
Q ss_pred ccccEEEcccCCCCCCCchHHH-hcCCCCcEEEccC--CcCccc-----Cchhh--cCCCCCcEEEccCCcccccCchhc
Q 037101 231 THILFLTLANNKFIGPLPRSIF-KAFSELTEVLLVN--NQLTGC-----LPYEI--GYLKEAVVFDVGDNQLTGQLPFSL 300 (395)
Q Consensus 231 ~~L~~L~l~~n~l~~~~p~~~~-~~l~~L~~L~l~~--n~l~~~-----~~~~~--~~l~~L~~L~Ls~n~l~~~~p~~l 300 (395)
++|++|++..+.+.......+. ..+++|++|+|+. |...+. +...+ ..+++|++|+|.+|.+.+..+..+
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l 272 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence 3555555555544322222232 1366777777642 111111 11112 246788888888888764333333
Q ss_pred ---cCCCCCCeeecccCcCCCCC----hhhhcCCCCCcEEEccCCcccccCC-CCcC-CCCCCEEEccCCC
Q 037101 301 ---ACLEKVEQLNFANNLLFGMV----PEAVCGLPNLLHFSLSDNYFTHAGP-LCRF-LIEKGVLDVRNNC 362 (395)
Q Consensus 301 ---~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~-l~~L~~L~L~~N~ 362 (395)
..+++|++|+|+.|.+.+.. +..+..+++|+.|+|++|.|++... .+.. + ...++++.++
T Consensus 273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 24678888888888886643 2333456888888888888775422 1222 2 3567888776
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=2.2e-09 Score=101.46 Aligned_cols=199 Identities=17% Similarity=0.131 Sum_probs=96.1
Q ss_pred CCCcEEECCCCCCCC-CC-------ccccCCCCCCCEEEccCCCCC---------CCcchhhcCCCCCcEEEeecCcCCC
Q 037101 137 PDIALFHANSNNFAG-TI-------SSNIAKLPYLYELDISNNKFS---------GPFPAAVLGMNNLEFLDIRFNYFTG 199 (395)
Q Consensus 137 ~~L~~L~l~~n~l~~-~~-------p~~~~~l~~L~~L~Ls~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~l~~ 199 (395)
..++.|.+....+.+ .. ..++.++++|+.|.+...... +.+...+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 356667666554432 11 222345667777777554321 124444566677777777666311
Q ss_pred CCCchhccCCCCeeeeccccCcccCCcccc---CccccEEEccc--CCCCCC-----CchHHH-hcCCCCcEEEccCCcC
Q 037101 200 SVPPQIFTQNLDFLFINNNGFMIKLPDNIG---STHILFLTLAN--NKFIGP-----LPRSIF-KAFSELTEVLLVNNQL 268 (395)
Q Consensus 200 ~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~---~~~L~~L~l~~--n~l~~~-----~p~~~~-~~l~~L~~L~l~~n~l 268 (395)
.++. +..++|++|++..|.+.......+. .++|++|+|+. |...+. +...+. ..+++|++|++.+|.+
T Consensus 186 ~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 186 SIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp BCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred eecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 2333 2345666666666655432222222 25666666642 111111 111111 1245666666666666
Q ss_pred cccCchhhc---CCCCCcEEEccCCccccc----CchhccCCCCCCeeecccCcCCCCChhhhcC-CCCCcEEEccCCc
Q 037101 269 TGCLPYEIG---YLKEAVVFDVGDNQLTGQ----LPFSLACLEKVEQLNFANNLLFGMVPEAVCG-LPNLLHFSLSDNY 339 (395)
Q Consensus 269 ~~~~~~~~~---~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~ 339 (395)
.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++......+.. + ...++++.+.
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 533322222 355666666666666542 2222334566666666666664433333332 1 2445666554
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.74 E-value=2.5e-07 Score=88.52 Aligned_cols=84 Identities=6% Similarity=-0.013 Sum_probs=50.9
Q ss_pred hhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCCCcEEEccCCcccccCC-CCcCCCCC
Q 037101 275 EIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP-LCRFLIEK 353 (395)
Q Consensus 275 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L 353 (395)
.+..+.+|+.+.+..+ ++......|.++.+|+.+++..+ ++......|.++.+|+.+++..+ ++.+.. .|.++++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3445566666666543 44344455666777777777543 44444556777777777777655 555544 36677777
Q ss_pred CEEEccCC
Q 037101 354 GVLDVRNN 361 (395)
Q Consensus 354 ~~L~L~~N 361 (395)
+.+++..+
T Consensus 369 ~~i~lp~~ 376 (394)
T 4fs7_A 369 KKVELPKR 376 (394)
T ss_dssp CEEEEEGG
T ss_pred CEEEECCC
Confidence 77777543
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.72 E-value=1.7e-07 Score=89.80 Aligned_cols=200 Identities=12% Similarity=0.066 Sum_probs=114.4
Q ss_pred cccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCCCCCCchhcc--CCCCeeeeccccCcccCCccccCcc
Q 037101 155 SNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFTGSVPPQIFT--QNLDFLFINNNGFMIKLPDNIGSTH 232 (395)
Q Consensus 155 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~ 232 (395)
.+|.++++|+.+.+.++... .....|.++.+|+.+++..+ ++ .++...+. ..|+.+.+..+... .....+....
T Consensus 156 ~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~ 231 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY-LGDFALSKTG 231 (394)
T ss_dssp TTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCC
T ss_pred hhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE-eehhhcccCC
Confidence 45667777777777654322 44455667777777777655 33 44444433 55666665554322 1112222256
Q ss_pred ccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecc
Q 037101 233 ILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFA 312 (395)
Q Consensus 233 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 312 (395)
|+.+.+.... . .+....+..+..++.+.+..+... .....+..+..++.+....+.+. ...+..+.+|+.+.+.
T Consensus 232 l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 232 VKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEEC
T ss_pred CceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccc
Confidence 6666664332 2 333444445667777777665433 44455666777777766655433 2345666777777776
Q ss_pred cCcCCCCChhhhcCCCCCcEEEccCCcccccCC-CCcCCCCCCEEEccCCCCCCCC
Q 037101 313 NNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGP-LCRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 313 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~i~~lp 367 (395)
.+ +.......|.++.+|+.+++.++ ++.+.. .|.++.+|+.+++..| ++.++
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 54 44444456777777777777543 555544 3667777777777655 55444
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.67 E-value=3.3e-07 Score=87.70 Aligned_cols=109 Identities=8% Similarity=0.073 Sum_probs=70.2
Q ss_pred HHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCC
Q 037101 250 SIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPN 329 (395)
Q Consensus 250 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 329 (395)
..|..+..|+.+.+..+... .....|.++..|+.+.+. +.++......|.++.+|+.+.|..+ ++......|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 34445667777777654333 334556677777777775 3444344556777788888887654 44444566777888
Q ss_pred CcEEEccCCcccccCC-CCcCCCCCCEEEccCCC
Q 037101 330 LLHFSLSDNYFTHAGP-LCRFLIEKGVLDVRNNC 362 (395)
Q Consensus 330 L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~ 362 (395)
|+.+.+..+ ++.+.. .|.++.+|+.+++.++.
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 888888543 555544 37777888888877763
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=9.8e-09 Score=87.66 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=62.6
Q ss_pred CCCCcEEEccCC-cCccc----CchhhcCCCCCcEEEccCCccccc----CchhccCCCCCCeeecccCcCCCC----Ch
Q 037101 255 FSELTEVLLVNN-QLTGC----LPYEIGYLKEAVVFDVGDNQLTGQ----LPFSLACLEKVEQLNFANNLLFGM----VP 321 (395)
Q Consensus 255 l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p 321 (395)
.+.|++|+|++| .+... +...+...++|++|+|++|.|... +...+...++|++|+|++|.|... +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 455666666666 55422 233444556666666666666532 223344445667777777766443 23
Q ss_pred hhhcCCCCCcEEEc--cCCcccccCC-----CCcCCCCCCEEEccCCCCC
Q 037101 322 EAVCGLPNLLHFSL--SDNYFTHAGP-----LCRFLIEKGVLDVRNNCIP 364 (395)
Q Consensus 322 ~~~~~l~~L~~L~L--~~N~l~~~~~-----~~~~l~~L~~L~L~~N~i~ 364 (395)
..+...++|++|+| ++|.|+.... .+...++|++|+|++|.|.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 44555666777777 6676665321 2445566777777777654
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.56 E-value=7.8e-07 Score=85.10 Aligned_cols=126 Identities=12% Similarity=0.085 Sum_probs=87.8
Q ss_pred ccccEEEcccCCCCCCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeee
Q 037101 231 THILFLTLANNKFIGPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLN 310 (395)
Q Consensus 231 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 310 (395)
..|+.+.+..+.. .+....|..+..|+.+.+. +.++......|.++.+|+.+++..+ ++......|.++.+|+.+.
T Consensus 265 ~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 265 AYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp SSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 5677777765432 3555666678999999996 4455455667889999999999865 5545567899999999999
Q ss_pred cccCcCCCCChhhhcCCCCCcEEEccCCcccccCCCCcCCCCCCEEEccCCCC
Q 037101 311 FANNLLFGMVPEAVCGLPNLLHFSLSDNYFTHAGPLCRFLIEKGVLDVRNNCI 363 (395)
Q Consensus 311 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~i 363 (395)
+..+ ++......|.++.+|+.+++.++.... ..+....+|+.+.+..|.+
T Consensus 341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 341 IPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC----------
T ss_pred ECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence 9755 656666789999999999999886543 2466677888888877654
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=4.5e-08 Score=83.49 Aligned_cols=112 Identities=14% Similarity=0.088 Sum_probs=73.3
Q ss_pred ccccEEEcccC-CCCCCCchHHH---hcCCCCcEEEccCCcCccc----CchhhcCCCCCcEEEccCCccccc----Cch
Q 037101 231 THILFLTLANN-KFIGPLPRSIF---KAFSELTEVLLVNNQLTGC----LPYEIGYLKEAVVFDVGDNQLTGQ----LPF 298 (395)
Q Consensus 231 ~~L~~L~l~~n-~l~~~~p~~~~---~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~ 298 (395)
++|++|++++| .+.......+. ...++|++|+|++|.+... +...+...++|++|+|++|.|... +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 45666777766 65532222221 2256788888888887642 334455567788888888888743 345
Q ss_pred hccCCCCCCeeec--ccCcCCCC----ChhhhcCCCCCcEEEccCCcccc
Q 037101 299 SLACLEKVEQLNF--ANNLLFGM----VPEAVCGLPNLLHFSLSDNYFTH 342 (395)
Q Consensus 299 ~l~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~ 342 (395)
.+...++|++|+| ++|.+... +...+...++|+.|+|++|.+..
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 5666778888888 77888654 23445556888899998888754
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=2.1e-08 Score=90.26 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=33.7
Q ss_pred CCCCcEEEccCCcCcc--cCchhhcCCCCCcEEEccCCcccccCchhccCCC--CCCeeecccCcCCCC
Q 037101 255 FSELTEVLLVNNQLTG--CLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLE--KVEQLNFANNLLFGM 319 (395)
Q Consensus 255 l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~ 319 (395)
+++|+.|+|++|++++ .++..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence 5566666666666664 3334455566666666666666532 1222222 555555555555443
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=5e-07 Score=81.27 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=32.9
Q ss_pred CCCCCcEEEccCCcccc--cCchhccCCCCCCeeecccCcCCCCChhhhcCCC--CCcEEEccCCcccc
Q 037101 278 YLKEAVVFDVGDNQLTG--QLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLP--NLLHFSLSDNYFTH 342 (395)
Q Consensus 278 ~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~ 342 (395)
++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|++.+. ..+..+. +|+.|+|++|.+++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 45556666666666554 2234444555666666666665443 2222222 56666666666554
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.24 E-value=3.5e-05 Score=72.97 Aligned_cols=109 Identities=8% Similarity=0.074 Sum_probs=67.7
Q ss_pred HHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcCCCCChhhhcCCCC
Q 037101 250 SIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLLFGMVPEAVCGLPN 329 (395)
Q Consensus 250 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 329 (395)
..+..+..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +.......|.++.+|+.+.+.++.+.......|.++.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 33444566666666544 33233445666677777777543 44344455677777888877777765555667777778
Q ss_pred CcEEEccCCcccccCC-CCcCCCCCCEEEccCC
Q 037101 330 LLHFSLSDNYFTHAGP-LCRFLIEKGVLDVRNN 361 (395)
Q Consensus 330 L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N 361 (395)
|+.+.|..+ ++.+.. .|.++.+|+.+.+..+
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 888877644 555544 3677777777776543
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.11 E-value=6.9e-05 Score=70.91 Aligned_cols=242 Identities=11% Similarity=0.049 Sum_probs=145.4
Q ss_pred cEEEEEcCCCCcCCCCcccccCCCCCCcEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEe
Q 037101 113 AVASIDFNGFQLSAPTLDGFLDQLPDIALFHANSNNFAGTISSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDI 192 (395)
Q Consensus 113 ~l~~L~Ls~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 192 (395)
+++.+.+... ++. +-..+|.++.+|+.+.+..+ ++..-..+|.++ +|+.+.+..+ ++.....+|.. .+|+.+++
T Consensus 47 ~i~~v~ip~~-vt~-Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 47 RISEVRVNSG-ITS-IGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GCSEEEECTT-EEE-ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred CCEEEEeCCC-ccC-hHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 6677777542 332 34567888899999998644 554445567766 6888777644 44233344544 47888888
Q ss_pred ecCcCCCCCCchhcc-CCCCeeeeccccCcccCCccccC-ccccEEEcccCCCC--------------------------
Q 037101 193 RFNYFTGSVPPQIFT-QNLDFLFINNNGFMIKLPDNIGS-THILFLTLANNKFI-------------------------- 244 (395)
Q Consensus 193 s~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~-------------------------- 244 (395)
..+- + .+....+. .+|+.+.+..+ +...-...+.. ..++.+.+..+...
T Consensus 121 p~~~-~-~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
T 4h09_A 121 PGAT-T-EIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT 197 (379)
T ss_dssp CTTC-C-EECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred CCcc-c-cccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence 7553 2 33333333 45655555443 22111112221 34444443322211
Q ss_pred --------CCCchHHHhcCCCCcEEEccCCcCcccCchhhcCCCCCcEEEccCCcccccCchhccCCCCCCeeecccCcC
Q 037101 245 --------GPLPRSIFKAFSELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLL 316 (395)
Q Consensus 245 --------~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 316 (395)
..+....+....+|+.+.+..+ +.......+.++..|+.+.+..+ ++......+.++.+|+.+.+..+ +
T Consensus 198 ~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i 274 (379)
T 4h09_A 198 EFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V 274 (379)
T ss_dssp EEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C
T ss_pred ccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-c
Confidence 0011112223456666666543 33233456677888888888766 55455667888889999998654 5
Q ss_pred CCCChhhhcCCCCCcEEEccCCcccccCCC-CcCCCCCCEEEccCCCCCCCC
Q 037101 317 FGMVPEAVCGLPNLLHFSLSDNYFTHAGPL-CRFLIEKGVLDVRNNCIPDLP 367 (395)
Q Consensus 317 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~i~~lp 367 (395)
.......|..+.+|+.+.+.++.++.+... |.++.+|+.+.|..+ ++.+.
T Consensus 275 ~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 325 (379)
T 4h09_A 275 KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ 325 (379)
T ss_dssp SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEH
Confidence 455556788999999999999989887664 889999999999754 44443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=1.4e-06 Score=72.94 Aligned_cols=82 Identities=11% Similarity=-0.019 Sum_probs=38.6
Q ss_pred CCcEEEccCCcCcccCchhhcCCCCCcEEEccCCc-ccccCchhccCC----CCCCeeecccCc-CCCCChhhhcCCCCC
Q 037101 257 ELTEVLLVNNQLTGCLPYEIGYLKEAVVFDVGDNQ-LTGQLPFSLACL----EKVEQLNFANNL-LFGMVPEAVCGLPNL 330 (395)
Q Consensus 257 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~L 330 (395)
.|++|+++++.++..--..+..+++|+.|+|++|. |++..-..+..+ ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34555555554443333344455555555555553 443222333332 245555555553 444333344455555
Q ss_pred cEEEccCC
Q 037101 331 LHFSLSDN 338 (395)
Q Consensus 331 ~~L~L~~N 338 (395)
+.|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=1.4e-06 Score=72.91 Aligned_cols=86 Identities=13% Similarity=0.069 Sum_probs=69.8
Q ss_pred CCCcEEEccCCcccccCchhccCCCCCCeeecccCc-CCCCChhhhcCC----CCCcEEEccCCc-ccccCC-CCcCCCC
Q 037101 280 KEAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNL-LFGMVPEAVCGL----PNLLHFSLSDNY-FTHAGP-LCRFLIE 352 (395)
Q Consensus 280 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~~-~~~~l~~ 352 (395)
-.|+.||++++.|+..--..+..+++|++|+|++|. +++..-..+..+ ++|+.|+|++|. ||+..- .+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999987766778899999999999995 766555566664 479999999985 886533 3678999
Q ss_pred CCEEEccCCC-CCC
Q 037101 353 KGVLDVRNNC-IPD 365 (395)
Q Consensus 353 L~~L~L~~N~-i~~ 365 (395)
|++|+|+++. |++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 9999999984 654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.52 E-value=4.6e-05 Score=64.94 Aligned_cols=107 Identities=12% Similarity=0.071 Sum_probs=52.9
Q ss_pred CCCcEEEccCC-cCcc----cCchhhcCCCCCcEEEccCCccccc----CchhccCCCCCCeeecccCcCCCC----Chh
Q 037101 256 SELTEVLLVNN-QLTG----CLPYEIGYLKEAVVFDVGDNQLTGQ----LPFSLACLEKVEQLNFANNLLFGM----VPE 322 (395)
Q Consensus 256 ~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~ 322 (395)
+.|++|+|++| ++.. .+...+..-+.|+.|+|++|+|... +...+..-+.|++|+|++|.|... +.+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 45555555553 4432 1233344445566666666665532 222233445666666666666432 222
Q ss_pred hhcCCCCCcEEEccCC---ccccc-----CCCCcCCCCCCEEEccCCC
Q 037101 323 AVCGLPNLLHFSLSDN---YFTHA-----GPLCRFLIEKGVLDVRNNC 362 (395)
Q Consensus 323 ~~~~l~~L~~L~L~~N---~l~~~-----~~~~~~l~~L~~L~L~~N~ 362 (395)
.+..-+.|+.|+|++| .+... ...+..-+.|+.|+++.|.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3444556666666644 22221 1124455566666666554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.46 E-value=6.7e-05 Score=63.93 Aligned_cols=109 Identities=18% Similarity=0.126 Sum_probs=63.2
Q ss_pred ccccEEEcccC-CCCCC----CchHHHhcCCCCcEEEccCCcCccc----CchhhcCCCCCcEEEccCCccccc----Cc
Q 037101 231 THILFLTLANN-KFIGP----LPRSIFKAFSELTEVLLVNNQLTGC----LPYEIGYLKEAVVFDVGDNQLTGQ----LP 297 (395)
Q Consensus 231 ~~L~~L~l~~n-~l~~~----~p~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p 297 (395)
+.|++|+|++| .+... +...+. .-+.|++|+|++|++.+. +...+..-+.|+.|+|++|.|... +.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 35666666654 44322 122222 245677777777777632 233444557778888888877742 23
Q ss_pred hhccCCCCCCeeecccC---cCCCC----ChhhhcCCCCCcEEEccCCcc
Q 037101 298 FSLACLEKVEQLNFANN---LLFGM----VPEAVCGLPNLLHFSLSDNYF 340 (395)
Q Consensus 298 ~~l~~l~~L~~L~Ls~N---~l~~~----~p~~~~~l~~L~~L~L~~N~l 340 (395)
..+..-+.|++|+|++| .+... +.+.+..-++|+.|+++.|.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 34555567888888754 33221 334455667888888877654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.77 E-value=0.0028 Score=50.16 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=27.0
Q ss_pred CCCCEEEccCCCCCCCcchhhcCCCCCcEEEeecCcCC
Q 037101 161 PYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRFNYFT 198 (395)
Q Consensus 161 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 198 (395)
.+|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35777777777777555566777777777777777765
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.71 E-value=0.0027 Score=50.25 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=16.9
Q ss_pred CCcEEEccCCcccccCchhccCCCCCCeeecccCcC
Q 037101 281 EAVVFDVGDNQLTGQLPFSLACLEKVEQLNFANNLL 316 (395)
Q Consensus 281 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 316 (395)
+|++|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 345555555555533333344444555555555444
No 165
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=50.57 E-value=6.8 Score=20.44 Aligned_cols=8 Identities=13% Similarity=-0.226 Sum_probs=3.4
Q ss_pred cCCCCCCC
Q 037101 16 GKRISLTK 23 (395)
Q Consensus 16 ~~~~~~~~ 23 (395)
||+++++|
T Consensus 2 ggggggga 9 (29)
T 1cn3_F 2 GGGGGGGA 9 (29)
T ss_dssp CCCCCSTT
T ss_pred CCCCCCcc
Confidence 44444444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=38.13 E-value=51 Score=23.87 Aligned_cols=40 Identities=20% Similarity=0.134 Sum_probs=21.8
Q ss_pred ccccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEeec
Q 037101 154 SSNIAKLPYLYELDISNNKFSGPFPAAVLGMNNLEFLDIRF 194 (395)
Q Consensus 154 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 194 (395)
..+|.++..|+.+.|-.+ ++..-..+|.++.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344556666666665443 3323444566666666666654
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.02 E-value=1.6e+02 Score=21.11 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=4.8
Q ss_pred hcCCCCCcEEEc
Q 037101 324 VCGLPNLLHFSL 335 (395)
Q Consensus 324 ~~~l~~L~~L~L 335 (395)
|.++.+|+.+.+
T Consensus 39 F~~C~~L~~i~~ 50 (100)
T 2lz0_A 39 FSGCTALEKLIL 50 (100)
T ss_dssp STTCTTCCCEEE
T ss_pred HhccCCccEEEE
Confidence 333344444333
No 168
>3c66_C PRE-mRNA polyadenylation factor FIP1; peptide-protein complex, mRNA processing, nucleus, RNA-bindi transferase, phosphoprotein; HET: MES; 2.60A {Saccharomyces cerevisiae}
Probab=20.77 E-value=36 Score=17.88 Aligned_cols=10 Identities=20% Similarity=0.023 Sum_probs=7.2
Q ss_pred EeEEeccCCC
Q 037101 10 LGFVIGGKRI 19 (395)
Q Consensus 10 ~~~~~~~~~~ 19 (395)
+||+||-|..
T Consensus 2 vEfIIs~G~D 11 (26)
T 3c66_C 2 LEVIISLGPD 11 (26)
T ss_dssp CCEESCSSSS
T ss_pred eEEEEecCCC
Confidence 5889986653
Done!