BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037105
         (98 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B3QR77|RL4_CHLP8 50S ribosomal protein L4 OS=Chlorobaculum parvum (strain NCIB 8327)
           GN=rplD PE=3 SV=1
          Length = 208

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 32  STKSTSSKSPLLQKSSSTKCPLPRSYSQKGSSISRKCRGLAK 73
           + +  SS+SP++    +   P PRSY QK   ++RK + LA+
Sbjct: 72  NARQGSSRSPIMVGGGTIFGPQPRSYEQK---VNRKVKQLAR 110


>sp|B6IYD3|GPMA_RHOCS 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
           OS=Rhodospirillum centenum (strain ATCC 51521 / SW)
           GN=gpmA PE=3 SV=1
          Length = 228

 Score = 31.6 bits (70), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%)

Query: 1   MDEKWKLSKKDGSCSSSHASSSNKLPFTRSFSTKSTSSKSPLLQKSSSTKCPLPRSYSQK 60
           MD  W   +KD   +  H      L  T++ +           +       PLP    ++
Sbjct: 72  MDRLWLPVQKDWRLNERHYGGLQGLNKTQTAAQHGKEQVHIWRRSYDIPPPPLPEG-DER 130

Query: 61  GSSISRKCRGLAKEQKARFYIMRRCVA-MLVCWHK 94
                R+ +GL+KEQ  R   ++ CVA +L  WH+
Sbjct: 131 LPDGDRRYKGLSKEQLPRTESLKDCVARVLPYWHE 165


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.121    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,888,908
Number of Sequences: 539616
Number of extensions: 873115
Number of successful extensions: 6717
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 5291
Number of HSP's gapped (non-prelim): 1015
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)