Query 037105
Match_columns 98
No_of_seqs 91 out of 106
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 08:43:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08137 DVL: DVL family; Int 99.6 5.8E-16 1.2E-20 82.4 0.4 19 73-91 1-19 (19)
2 PF15654 Tox-WTIP: Toxin with 32.8 20 0.00044 23.4 0.7 14 77-90 24-37 (54)
3 PF14766 RPA_interact_N: Repli 29.0 36 0.00077 20.4 1.3 19 62-80 17-35 (42)
4 KOG4064 Cysteine dioxygenase C 22.0 23 0.00051 27.9 -0.6 7 87-93 74-80 (196)
5 PF05995 CDO_I: Cysteine dioxy 20.9 13 0.00029 27.1 -2.1 16 77-92 67-82 (175)
6 cd08784 Death_DRs Death Domain 19.3 1.2E+02 0.0025 19.6 2.4 30 64-95 23-52 (79)
7 PHA02673 ORF109 EEV glycoprote 17.3 87 0.0019 24.2 1.6 19 69-91 19-37 (161)
8 PF08247 ENOD40: ENOD40 protei 14.2 43 0.00092 16.1 -0.5 7 88-94 1-7 (12)
9 PF06747 CHCH: CHCH domain; I 13.1 85 0.0018 16.8 0.5 11 87-97 7-17 (35)
10 KOG0200 Fibroblast/platelet-de 13.0 89 0.0019 26.8 0.8 10 86-95 553-562 (609)
No 1
>PF08137 DVL: DVL family; InterPro: IPR012552 This family consists of the DVL family of proteins. In a gain-of-function genetic screen for genes that influence fruit development in Arabidopsis, DEVIL (DVL) gene was identified. DVL is a small protein and over expression of the protein results in pleiotropic phenotypes featured by shortened stature, rounder rosette leaves, clustered inflorescences, shortened pedicles, and siliques with pronged tips. DVL family is a novel class of small polypeptides and the over expression phenotypes suggest that these polypeptides may have a role in plant development [].
Probab=99.56 E-value=5.8e-16 Score=82.37 Aligned_cols=19 Identities=74% Similarity=1.429 Sum_probs=18.5
Q ss_pred HhhhhhehhhhHHHHhhhh
Q 037105 73 KEQKARFYIMRRCVAMLVC 91 (98)
Q Consensus 73 KeQRaRlYIiRRCv~MLlC 91 (98)
||||||||||||||+||||
T Consensus 1 keqr~r~YIirrCv~mLlc 19 (19)
T PF08137_consen 1 KEQRARLYIIRRCVVMLLC 19 (19)
T ss_pred CCcceEEEeHHHhHHHhcC
Confidence 7999999999999999998
No 2
>PF15654 Tox-WTIP: Toxin with a conserved tryptophan and TIP tripeptide motif
Probab=32.82 E-value=20 Score=23.38 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=11.3
Q ss_pred hhehhhhHHHHhhh
Q 037105 77 ARFYIMRRCVAMLV 90 (98)
Q Consensus 77 aRlYIiRRCv~MLl 90 (98)
+--|+|-|||-||-
T Consensus 24 G~gY~iYR~vRmlP 37 (54)
T PF15654_consen 24 GAGYLIYRGVRMLP 37 (54)
T ss_pred chhhhhhhHHhhcc
Confidence 34599999999984
No 3
>PF14766 RPA_interact_N: Replication protein A interacting N-terminal
Probab=29.01 E-value=36 Score=20.44 Aligned_cols=19 Identities=11% Similarity=0.476 Sum_probs=16.6
Q ss_pred CchhhhHHHHHHhhhhheh
Q 037105 62 SSISRKCRGLAKEQKARFY 80 (98)
Q Consensus 62 ~s~~~rc~~~~KeQRaRlY 80 (98)
..|.++|..-||+.|++|.
T Consensus 17 e~lR~rC~~R~r~~R~~lL 35 (42)
T PF14766_consen 17 ETLRERCLERVRESRTQLL 35 (42)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999874
No 4
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=22.04 E-value=23 Score=27.94 Aligned_cols=7 Identities=43% Similarity=1.521 Sum_probs=5.5
Q ss_pred Hhhhhhc
Q 037105 87 AMLVCWH 93 (98)
Q Consensus 87 ~MLlCwh 93 (98)
.|+|||-
T Consensus 74 LmILCWG 80 (196)
T KOG4064|consen 74 LMILCWG 80 (196)
T ss_pred EEEEEec
Confidence 5899993
No 5
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=20.87 E-value=13 Score=27.13 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=9.9
Q ss_pred hhehhhhHHHHhhhhh
Q 037105 77 ARFYIMRRCVAMLVCW 92 (98)
Q Consensus 77 aRlYIiRRCv~MLlCw 92 (98)
.+||-=-.+-+||+||
T Consensus 67 ~ll~~~~~~el~ll~W 82 (175)
T PF05995_consen 67 NLLYRDERFELWLLCW 82 (175)
T ss_dssp EEEEGGCT-EEEEEEE
T ss_pred EEEecCCCeEEEEEEe
Confidence 3344445677889999
No 6
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=19.35 E-value=1.2e+02 Score=19.60 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=19.2
Q ss_pred hhhhHHHHHHhhhhhehhhhHHHHhhhhhccc
Q 037105 64 ISRKCRGLAKEQKARFYIMRRCVAMLVCWHKH 95 (98)
Q Consensus 64 ~~~rc~~~~KeQRaRlYIiRRCv~MLlCwhd~ 95 (98)
|+..=...++..-.+ .-.+|.-||..|.+-
T Consensus 23 ls~~~I~~ie~~~~~--~~eq~~~mL~~W~~k 52 (79)
T cd08784 23 LSDNEIKVAELDNPQ--HRDRVYELLRIWRNK 52 (79)
T ss_pred CCHHHHHHHHHcCCc--hHHHHHHHHHHHHhc
Confidence 333333444444444 568999999999874
No 7
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=17.28 E-value=87 Score=24.17 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=13.9
Q ss_pred HHHHHhhhhhehhhhHHHHhhhh
Q 037105 69 RGLAKEQKARFYIMRRCVAMLVC 91 (98)
Q Consensus 69 ~~~~KeQRaRlYIiRRCv~MLlC 91 (98)
.+-||.|+++ |||+.|++.
T Consensus 19 ~as~~r~k~~----~R~i~l~~R 37 (161)
T PHA02673 19 VASVKRQKAI----RRYIKLFFR 37 (161)
T ss_pred hhHHHHHHHH----HHHHHHHHH
Confidence 3558888885 888887764
No 8
>PF08247 ENOD40: ENOD40 protein; InterPro: IPR013186 The soybean early nodulin 40 (ENOD40) mRNA contains two short overlapping ORFs; in vitro translation yields two peptides of 12 and 24 amino acids []. The putative role of the ENOD40 genes has been in favour of organogenesis, such as induction of the cortical cell divisions that lead to initiation of nodule primordia, in developing lateral roots and embryonic tissues. This supports the hypothesis for a role of ENOD40 in lateral organ development [].
Probab=14.20 E-value=43 Score=16.13 Aligned_cols=7 Identities=57% Similarity=1.588 Sum_probs=5.2
Q ss_pred hhhhhcc
Q 037105 88 MLVCWHK 94 (98)
Q Consensus 88 MLlCwhd 94 (98)
|-|||.+
T Consensus 1 m~l~wqk 7 (12)
T PF08247_consen 1 MELCWQK 7 (12)
T ss_pred CceeEee
Confidence 6689965
No 9
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=13.15 E-value=85 Score=16.85 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=7.8
Q ss_pred HhhhhhcccCC
Q 037105 87 AMLVCWHKHGD 97 (98)
Q Consensus 87 ~MLlCwhd~~~ 97 (98)
.+|-||.++++
T Consensus 7 ~~~~Cl~~n~~ 17 (35)
T PF06747_consen 7 AYLACLKENNF 17 (35)
T ss_dssp HHHHHHHCH-S
T ss_pred HHHHHHHHCCC
Confidence 57889988864
No 10
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=13.04 E-value=89 Score=26.83 Aligned_cols=10 Identities=30% Similarity=0.800 Sum_probs=7.9
Q ss_pred HHhhhhhccc
Q 037105 86 VAMLVCWHKH 95 (98)
Q Consensus 86 v~MLlCwhd~ 95 (98)
-+|+.|||..
T Consensus 553 ~iM~~CW~~~ 562 (609)
T KOG0200|consen 553 DLMKSCWNAD 562 (609)
T ss_pred HHHHHHhCCC
Confidence 5699999765
Done!