Query 037105
Match_columns 98
No_of_seqs 91 out of 106
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 14:36:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rrh_A VIP peptides; peptide h 15.6 71 0.0024 17.1 1.4 22 62-83 4-25 (29)
2 1gea_A Pituitary adenylate cyc 13.4 88 0.003 16.7 1.4 20 62-81 4-23 (26)
3 3c0f_B Uncharacterized protein 10.3 38 0.0013 23.1 -0.9 10 87-96 34-43 (91)
4 2d2p_A Pituitary adenylate cyc 10.3 1.3E+02 0.0046 17.1 1.6 22 62-83 4-25 (39)
5 1wq6_A AML1-ETO; NHR2, oncopro 9.7 1.3E+02 0.0046 19.6 1.6 19 69-87 34-52 (72)
6 1fad_A Protein (FADD protein); 9.3 94 0.0032 19.2 0.7 14 81-94 53-66 (99)
7 2ki9_A Cannabinoid receptor 2; 8.6 1.1E+02 0.0038 15.4 0.7 11 84-94 11-21 (33)
8 1wxp_A THO complex subunit 1; 8.5 1E+02 0.0036 19.7 0.7 12 83-94 58-69 (110)
9 2h80_A STAR-related lipid tran 8.2 78 0.0027 21.2 -0.0 12 77-88 69-80 (81)
10 2dky_A RHO-GTPase-activating p 7.9 84 0.0029 21.4 0.0 18 76-93 70-87 (91)
No 1
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=15.57 E-value=71 Score=17.15 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=18.2
Q ss_pred CchhhhHHHHHHhhhhhehhhh
Q 037105 62 SSISRKCRGLAKEQKARFYIMR 83 (98)
Q Consensus 62 ~s~~~rc~~~~KeQRaRlYIiR 83 (98)
..|+.-..+++++++|+-||=+
T Consensus 4 g~FTsdysk~l~~~~ak~fl~~ 25 (29)
T 2rrh_A 4 AVFTDNYTRLRKQMAVKKYLNS 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHH
Confidence 3588888999999999988743
No 2
>1gea_A Pituitary adenylate cyclase activating polypeptide; beta coil, consecutive beta turns, type-II beta turn, type- I beta turn, helix, neuropeptide; HET: LYN; NMR {Synthetic} SCOP: j.81.1.1
Probab=13.42 E-value=88 Score=16.67 Aligned_cols=20 Identities=5% Similarity=0.071 Sum_probs=15.5
Q ss_pred CchhhhHHHHHHhhhhhehh
Q 037105 62 SSISRKCRGLAKEQKARFYI 81 (98)
Q Consensus 62 ~s~~~rc~~~~KeQRaRlYI 81 (98)
.-|+.-..+++++++++-||
T Consensus 4 g~FTsdySry~~~~~~q~fl 23 (26)
T 1gea_A 4 GIFTDSYSRYRKQMAVKXXX 23 (26)
T ss_dssp SSSSSHHHHHHHHHHHCC--
T ss_pred ccchhHHHHHHHHHHHHhcc
Confidence 46888888999999999887
No 3
>3c0f_B Uncharacterized protein AF_1514; hot DOG fold, sulphur SAD, methylated, unknown function; HET: MLY; 1.80A {Archaeoglobus fulgidus dsm 4304}
Probab=10.33 E-value=38 Score=23.11 Aligned_cols=10 Identities=20% Similarity=0.395 Sum_probs=8.6
Q ss_pred HhhhhhcccC
Q 037105 87 AMLVCWHKHG 96 (98)
Q Consensus 87 ~MLlCwhd~~ 96 (98)
.|||-|+|.-
T Consensus 34 ~mLLaW~D~k 43 (91)
T 3c0f_B 34 GILLSVHDSX 43 (91)
T ss_dssp EEEEEEEETT
T ss_pred cEEEEEeecc
Confidence 7999999974
No 4
>2d2p_A Pituitary adenylate cyclase activating polypeptide-38; hormone/growth factor complex; NMR {Homo sapiens} PDB: 2jod_B
Probab=10.32 E-value=1.3e+02 Score=17.13 Aligned_cols=22 Identities=9% Similarity=0.167 Sum_probs=19.0
Q ss_pred CchhhhHHHHHHhhhhhehhhh
Q 037105 62 SSISRKCRGLAKEQKARFYIMR 83 (98)
Q Consensus 62 ~s~~~rc~~~~KeQRaRlYIiR 83 (98)
..|+.-..+++++++|+-||-+
T Consensus 4 g~FTs~yskyl~~~~ak~fl~~ 25 (39)
T 2d2p_A 4 GIFTDSYSRYRKQMAVKKYLAA 25 (39)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHH
Confidence 4688889999999999999854
No 5
>1wq6_A AML1-ETO; NHR2, oncoprotein; 2.00A {Homo sapiens}
Probab=9.71 E-value=1.3e+02 Score=19.62 Aligned_cols=19 Identities=16% Similarity=0.545 Sum_probs=14.7
Q ss_pred HHHHHhhhhhehhhhHHHH
Q 037105 69 RGLAKEQKARFYIMRRCVA 87 (98)
Q Consensus 69 ~~~~KeQRaRlYIiRRCv~ 87 (98)
..+|..-|--|-|+|||.-
T Consensus 34 ~~MVEKTrRsltvLrRcQe 52 (72)
T 1wq6_A 34 MDMVEKTRRSLTVLRRCQE 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777888888999975
No 6
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=9.27 E-value=94 Score=19.22 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=11.1
Q ss_pred hhhHHHHhhhhhcc
Q 037105 81 IMRRCVAMLVCWHK 94 (98)
Q Consensus 81 IiRRCv~MLlCwhd 94 (98)
.--+|..||.-|.+
T Consensus 53 ~~eq~~~mL~~W~~ 66 (99)
T 1fad_A 53 LSERVRESLKVWKN 66 (99)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34689999999965
No 7
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=8.56 E-value=1.1e+02 Score=15.35 Aligned_cols=11 Identities=27% Similarity=0.957 Sum_probs=7.2
Q ss_pred HHHHhhhhhcc
Q 037105 84 RCVAMLVCWHK 94 (98)
Q Consensus 84 RCv~MLlCwhd 94 (98)
--++.++||--
T Consensus 11 vv~~F~icW~P 21 (33)
T 2ki9_A 11 VLAVLLICWFP 21 (33)
T ss_dssp HHHHHTTTSSH
T ss_pred HHHHHHHHHhH
Confidence 34567788853
No 8
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=8.53 E-value=1e+02 Score=19.74 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=10.3
Q ss_pred hHHHHhhhhhcc
Q 037105 83 RRCVAMLVCWHK 94 (98)
Q Consensus 83 RRCv~MLlCwhd 94 (98)
-+|..||.-|.+
T Consensus 58 eq~~~mL~~W~~ 69 (110)
T 1wxp_A 58 MRAKQLLVAWQD 69 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 589999999974
No 9
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=8.23 E-value=78 Score=21.17 Aligned_cols=12 Identities=25% Similarity=0.747 Sum_probs=9.6
Q ss_pred hhehhhhHHHHh
Q 037105 77 ARFYIMRRCVAM 88 (98)
Q Consensus 77 aRlYIiRRCv~M 88 (98)
-||-++.+|+.|
T Consensus 69 RRl~tLN~Ca~M 80 (81)
T 2h80_A 69 RRLNTLNKCASM 80 (81)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHhhhhC
Confidence 467888899887
No 10
>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A
Probab=7.95 E-value=84 Score=21.41 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=13.3
Q ss_pred hhhehhhhHHHHhhhhhc
Q 037105 76 KARFYIMRRCVAMLVCWH 93 (98)
Q Consensus 76 RaRlYIiRRCv~MLlCwh 93 (98)
=-||-++.+|+.|=|=-|
T Consensus 70 ~RRl~tLN~Ca~Mkle~~ 87 (91)
T 2dky_A 70 CRRLNTLNKCAVMKLESG 87 (91)
T ss_dssp HHHHHHHHHHTTTTTCCC
T ss_pred HHHHHHHHHHhhheeccC
Confidence 357889999999966433
Done!