BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037106
         (145 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant
 pdb|1UCX|B Chain B, Crystal Structure Of Proglycinin C12g Mutant
 pdb|1UCX|C Chain C, Crystal Structure Of Proglycinin C12g Mutant
          Length = 476

 Score = 27.7 bits (60), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 4/24 (16%)

Query: 32 NNMKPDYDLAIRLEASGGLTECWN 55
          N +KPD     R+E+ GGL E WN
Sbjct: 18 NALKPDN----RIESEGGLIETWN 37


>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s
 pdb|1UD1|B Chain B, Crystal Structure Of Proglycinin Mutant C88s
 pdb|1UD1|C Chain C, Crystal Structure Of Proglycinin Mutant C88s
          Length = 476

 Score = 27.7 bits (60), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 4/24 (16%)

Query: 32 NNMKPDYDLAIRLEASGGLTECWN 55
          N +KPD     R+E+ GGL E WN
Sbjct: 18 NALKPDN----RIESEGGLIETWN 37


>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b
          Homotrimer
 pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b
          Homotrimer
 pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b
          Homotrimer
          Length = 476

 Score = 27.7 bits (60), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 4/24 (16%)

Query: 32 NNMKPDYDLAIRLEASGGLTECWN 55
          N +KPD     R+E+ GGL E WN
Sbjct: 18 NALKPDN----RIESEGGLIETWN 37


>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
 pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
          Length = 492

 Score = 27.7 bits (60), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 4/24 (16%)

Query: 32 NNMKPDYDLAIRLEASGGLTECWN 55
          N ++PD+    R+E+ GGL E WN
Sbjct: 14 NALEPDH----RVESEGGLIETWN 33


>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
          Length = 493

 Score = 27.7 bits (60), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 4/24 (16%)

Query: 32 NNMKPDYDLAIRLEASGGLTECWN 55
          N ++PD+    R+E+ GGL E WN
Sbjct: 15 NALEPDH----RVESEGGLIETWN 34


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,006,033
Number of Sequences: 62578
Number of extensions: 142040
Number of successful extensions: 391
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 5
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)