Query 037106
Match_columns 145
No_of_seqs 98 out of 100
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 08:43:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 1E-40 2.2E-45 252.1 8.6 114 1-124 1-116 (118)
2 PF05617 Prolamin_like: Prolam 99.8 6.4E-20 1.4E-24 124.0 2.3 65 52-116 1-70 (70)
3 PF07172 GRP: Glycine rich pro 90.6 0.18 3.9E-06 37.0 2.0 10 1-10 1-10 (95)
4 PLN00214 putative protein; Pro 86.9 0.89 1.9E-05 35.0 3.6 59 50-112 36-99 (115)
5 cd03727 SOCS_ASB8 SOCS (suppre 42.7 14 0.0003 23.8 1.1 31 80-114 8-39 (43)
6 cd01960 nsLTP1 nsLTP1: Non-spe 36.8 22 0.00047 24.6 1.4 35 52-91 2-37 (89)
7 smart00499 AAI Plant lipid tra 33.2 17 0.00037 23.0 0.4 40 53-97 1-44 (79)
8 PF09585 Lin0512_fam: Conserve 29.1 17 0.00037 27.8 -0.2 32 73-105 14-46 (113)
9 cd04660 nsLTP_like nsLTP_like: 25.3 44 0.00096 22.5 1.4 36 57-96 5-42 (73)
10 cd00010 AAI_LTSS AAI_LTSS: Alp 21.7 60 0.0013 20.6 1.4 21 71-91 7-28 (63)
No 1
>PLN00213 predicted protein; Provisional
Probab=100.00 E-value=1e-40 Score=252.10 Aligned_cols=114 Identities=25% Similarity=0.480 Sum_probs=104.9
Q ss_pred CcchhHHHHHHHHHHHHhhhhcccccCcCCCCCCCCChhhhhhhhcCCCchhHhhhhccCcchHHHHHHHHHhCcc-ccC
Q 037106 1 MALKHVFFILALTCLIIANIANATSRNDHLNNNMKPDYDLAIRLEASGGLTECWNMLMELKSCSNEIVIFFLNSQT-NIG 79 (145)
Q Consensus 1 Ma~k~~~~~l~v~~ii~s~~~~a~~~~~~p~~~~~~~~~l~~rl~~~~~~~~CWssl~~v~gC~~EI~~sflnG~~-~LG 79 (145)
|++|||+++|+|+||+++ ||| +++|+|.++++|+| +++++|.+|+.||||||+++|||+.||.+++++||+ +||
T Consensus 1 m~iknV~~ll~v~cIvvs--Vna-~lpqf~~~fp~~~p--~~~~pg~pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig 75 (118)
T PLN00213 1 MSIKNVFLLLAVLCIIVS--VNA-QLPQFPAQLPFLFP--FQLIPGLPDITKCFSSVMDIPGCIAEISQSIFTGKFGNLG 75 (118)
T ss_pred CchHHHHHHHHHHHHHhe--ecc-CCCCCCCCCCCCCC--ccCCCCCccHHHHHHHHcCCcchHHHHHHHHHhchhcccc
Confidence 999999999999999998 898 99999999888888 578999999999999999999999999999999999 999
Q ss_pred ccccHHHHhhhcCccccccCCCCCCchhhhHHhhccccCCCC-CCC
Q 037106 80 LDCCRAIDIITRNCGPAMLTSLGFTAEEGNILRGYCDASSGP-SPG 124 (145)
Q Consensus 80 p~CC~AI~~I~~~CWP~mfp~~~F~p~e~~~LKg~C~~~~~~-sP~ 124 (145)
++|||||++.+ +|||+| |.++|+|+ +||++|++++.. +|+
T Consensus 76 ~aCCKAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~i~~~~~~~ 116 (118)
T PLN00213 76 PACCKAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSRVAGATPPI 116 (118)
T ss_pred hHHHHHHHhhh-ccccCC-cCCCccch---HHHHHHhcccCCCCCC
Confidence 99999999965 999996 88888887 999999998754 444
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.78 E-value=6.4e-20 Score=124.03 Aligned_cols=65 Identities=31% Similarity=0.688 Sum_probs=55.9
Q ss_pred hHhhhhccCcchHHHHHHHHHhCcc-ccCccccHHHHhhhcCccccccCCCCCCchhh----hHHhhccc
Q 037106 52 ECWNMLMELKSCSNEIVIFFLNSQT-NIGLDCCRAIDIITRNCGPAMLTSLGFTAEEG----NILRGYCD 116 (145)
Q Consensus 52 ~CWssl~~v~gC~~EI~~sflnG~~-~LGp~CC~AI~~I~~~CWP~mfp~~~F~p~e~----~~LKg~C~ 116 (145)
|||+++.++++|+.||+.+|++|+. +||++||++|+.++++|||.|+...+++|++. +.||++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLRDLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhHHHHHhhcC
Confidence 6999999999999999999999995 99999999999999999999444434444444 49999996
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=90.59 E-value=0.18 Score=36.98 Aligned_cols=10 Identities=30% Similarity=0.318 Sum_probs=7.0
Q ss_pred CcchhHHHHH
Q 037106 1 MALKHVFFIL 10 (145)
Q Consensus 1 Ma~k~~~~~l 10 (145)
||+|..+||.
T Consensus 1 MaSK~~llL~ 10 (95)
T PF07172_consen 1 MASKAFLLLG 10 (95)
T ss_pred CchhHHHHHH
Confidence 9988855543
No 4
>PLN00214 putative protein; Provisional
Probab=86.86 E-value=0.89 Score=34.97 Aligned_cols=59 Identities=17% Similarity=0.336 Sum_probs=41.5
Q ss_pred chhHhhhhccCcchHHHHHHHHH-hCccccCccccHHHHhhhcCc---ccccc-CCCCCCchhhhHHh
Q 037106 50 LTECWNMLMELKSCSNEIVIFFL-NSQTNIGLDCCRAIDIITRNC---GPAML-TSLGFTAEEGNILR 112 (145)
Q Consensus 50 ~~~CWssl~~v~gC~~EI~~sfl-nG~~~LGp~CC~AI~~I~~~C---WP~mf-p~~~F~p~e~~~LK 112 (145)
...|-.-+. +-|..||+..++ ||. ....||+-+...+.+| |=+++ ..+.|...|...|+
T Consensus 36 ~~~C~~Kmt--~KCa~EI~a~i~~N~t--~s~~CC~~LVk~GK~CH~~LiK~i~~~p~~k~~as~~l~ 99 (115)
T PLN00214 36 WNTCLVKIT--PKCALDIIAVVFENGT--LIDPCCNDLVKEGKVCHDTLIKYIADKPMLIAHETEYLK 99 (115)
T ss_pred HHHHHhhcc--HhhHHHHHHHHHcCCC--CchHHHHHHHHHhhHHHHHHHHHHHcchhhhhhHHHhhc
Confidence 345654444 669999999999 554 4889999999999999 44444 45666665554443
No 5
>cd03727 SOCS_ASB8 SOCS (suppressors of cytokine signaling) box of ASB8-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB8 is highly transcribed in skeletal muscle and in lung carcinoma cell lines. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=42.73 E-value=14 Score=23.81 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=22.6
Q ss_pred ccccHHHHh-hhcCccccccCCCCCCchhhhHHhhc
Q 037106 80 LDCCRAIDI-ITRNCGPAMLTSLGFTAEEGNILRGY 114 (145)
Q Consensus 80 p~CC~AI~~-I~~~CWP~mfp~~~F~p~e~~~LKg~ 114 (145)
.-|+.||+. ++.+|.+...+..+.++ .||+|
T Consensus 8 ~LcR~aiR~~lg~~~l~~aI~~LpLP~----sLK~Y 39 (43)
T cd03727 8 ALARYAVRRSLGVQYLPEAVKQLPLPR----SVKEY 39 (43)
T ss_pred HHHHHHHHHHHhhhhHHhhcccCCCCH----HHHHH
Confidence 458889984 45676666567788877 88887
No 6
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=36.84 E-value=22 Score=24.63 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=24.5
Q ss_pred hHhhhhccCcchHHHHHHHHHhCcc-ccCccccHHHHhhhc
Q 037106 52 ECWNMLMELKSCSNEIVIFFLNSQT-NIGLDCCRAIDIITR 91 (145)
Q Consensus 52 ~CWssl~~v~gC~~EI~~sflnG~~-~LGp~CC~AI~~I~~ 91 (145)
+|=..+..+..|. .|++|.. .-++.||.+++.+..
T Consensus 2 ~C~~v~~~l~~C~-----~y~~g~~~~Ps~~CC~~v~~l~~ 37 (89)
T cd01960 2 SCGQVTSLLAPCL-----GYLTGGGPAPSPACCSGVKSLNG 37 (89)
T ss_pred CHHHHHhhHHhHH-----HHHhCCCCCCChHHhhhhHHHhh
Confidence 3556666677776 3455555 788899999998653
No 7
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=33.22 E-value=17 Score=23.04 Aligned_cols=40 Identities=20% Similarity=0.510 Sum_probs=25.3
Q ss_pred HhhhhccCcchHHHHHHHHHhCc---cccCccccHHHHhh-hcCccccc
Q 037106 53 CWNMLMELKSCSNEIVIFFLNSQ---TNIGLDCCRAIDII-TRNCGPAM 97 (145)
Q Consensus 53 CWssl~~v~gC~~EI~~sflnG~---~~LGp~CC~AI~~I-~~~CWP~m 97 (145)
|...+.++.+|..- +++. ......||..++.+ ...|+=..
T Consensus 1 C~~~~~~~~~c~~~-----~~~~~~~~~p~~~CC~~l~~~~~~~C~C~~ 44 (79)
T smart00499 1 CGQVLLQLAPCLSY-----LTGGSPGAPPSQQCCSQLRGLNSAQCRCLA 44 (79)
T ss_pred ChhhhhhHHhhHHH-----HcCCCCCCCCchHHHHHHHHhcccCCcchh
Confidence 34445555556533 3332 36678899999999 88886543
No 8
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=29.12 E-value=17 Score=27.79 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=25.6
Q ss_pred hCccccCccccHHHH-hhhcCccccccCCCCCCc
Q 037106 73 NSQTNIGLDCCRAID-IITRNCGPAMLTSLGFTA 105 (145)
Q Consensus 73 nG~~~LGp~CC~AI~-~I~~~CWP~mfp~~~F~p 105 (145)
.|| ..-+++++|++ .|.++|.|.|+...++..
T Consensus 14 hGq-D~TkAA~RAv~DAI~~nslp~l~~~~~~~~ 46 (113)
T PF09585_consen 14 HGQ-DYTKAAVRAVRDAISHNSLPGLFEILGLDL 46 (113)
T ss_pred cCC-cHHHHHHHHHHHHHhhcchHHHHHHcCCCh
Confidence 344 56678999997 789999999999888844
No 9
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=25.27 E-value=44 Score=22.48 Aligned_cols=36 Identities=19% Similarity=0.372 Sum_probs=22.1
Q ss_pred hccCcchHHHHHHHHHhCc--cccCccccHHHHhhhcCcccc
Q 037106 57 LMELKSCSNEIVIFFLNSQ--TNIGLDCCRAIDIITRNCGPA 96 (145)
Q Consensus 57 l~~v~gC~~EI~~sflnG~--~~LGp~CC~AI~~I~~~CWP~ 96 (145)
+..+..|.. ++..|. ..-+.+||.+|+.++..|.=.
T Consensus 5 ~~~L~~C~~----yl~~~~~~~~Ps~~CC~~vk~~~~~C~C~ 42 (73)
T cd04660 5 LDLLAECQP----YVTGPNPPPPPSRECCAALRRADLPCLCR 42 (73)
T ss_pred HHHHHHHHH----HHcCCCCCCCCCHHHHHHHHcCCcCCEee
Confidence 344455653 333344 246778999999887677533
No 10
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=21.67 E-value=60 Score=20.63 Aligned_cols=21 Identities=19% Similarity=0.608 Sum_probs=15.9
Q ss_pred HHhCcc-ccCccccHHHHhhhc
Q 037106 71 FLNSQT-NIGLDCCRAIDIITR 91 (145)
Q Consensus 71 flnG~~-~LGp~CC~AI~~I~~ 91 (145)
|++|.. .-.+.||.+++.+.+
T Consensus 7 y~~~~~~~Ps~~CC~~l~~~~~ 28 (63)
T cd00010 7 YLTGGATAPPSDCCSGLKSVVK 28 (63)
T ss_pred HHcCCCCCCChHHHHHHHHHHh
Confidence 455553 788899999999864
Done!