Query 037106
Match_columns 145
No_of_seqs 98 out of 100
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 14:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c8l_A FTSZ-like protein of un 17.5 19 0.00064 26.8 -0.9 29 77-105 21-50 (122)
2 2ebo_A Ebola virus envelope gl 12.0 52 0.0018 22.3 0.2 9 77-85 47-55 (74)
3 1bwo_A NS-LTP1, nonspecific li 11.0 98 0.0033 20.8 1.4 61 53-118 3-76 (90)
4 1afh_A Maize nonspecific lipid 10.8 87 0.003 21.1 1.0 61 53-118 4-78 (93)
5 1ebo_A Ebola virus envelope pr 9.4 72 0.0025 23.7 0.2 8 77-84 84-91 (131)
6 2knp_A Mcocc-1; disulfide-rich 9.0 59 0.002 18.9 -0.3 11 91-101 17-27 (33)
7 2alg_A Non-specific lipid tran 8.9 1E+02 0.0034 20.8 0.8 61 53-118 4-77 (92)
8 1w0t_A Telomeric repeat bindin 8.7 1.2E+02 0.004 18.1 0.9 16 101-116 3-18 (53)
9 2llk_A Cyclin-D-binding MYB-li 8.0 1.2E+02 0.0041 20.0 0.8 15 100-114 23-37 (73)
10 2d9a_A B-MYB, MYB-related prot 7.2 1.5E+02 0.005 18.0 0.9 17 101-117 9-25 (60)
No 1
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=17.52 E-value=19 Score=26.84 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=23.1
Q ss_pred ccCccccHHHH-hhhcCccccccCCCCCCc
Q 037106 77 NIGLDCCRAID-IITRNCGPAMLTSLGFTA 105 (145)
Q Consensus 77 ~LGp~CC~AI~-~I~~~CWP~mfp~~~F~p 105 (145)
+.-.++.+|++ .|.++|.|.|+...++..
T Consensus 21 D~TkAA~RAvrDAI~~nslp~~~~~~g~~~ 50 (122)
T 3c8l_A 21 EPTIAASRAVRNAIAHNALPGVWEVAGLSH 50 (122)
T ss_dssp CHHHHHHHHHHHHHTTCCCSSHHHHHTCSS
T ss_pred cHHHHHHHHHHHHHhhhcchhHHHHCCCCC
Confidence 45567888888 788999999998878743
No 2
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=12.03 E-value=52 Score=22.31 Aligned_cols=9 Identities=33% Similarity=0.689 Sum_probs=7.4
Q ss_pred ccCccccHH
Q 037106 77 NIGLDCCRA 85 (145)
Q Consensus 77 ~LGp~CC~A 85 (145)
-+||+||-.
T Consensus 47 ilgpdc~i~ 55 (74)
T 2ebo_A 47 ILGPDCAIE 55 (74)
T ss_dssp HHGGGGGCC
T ss_pred ecCCccccC
Confidence 699999954
No 3
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=11.02 E-value=98 Score=20.81 Aligned_cols=61 Identities=11% Similarity=0.381 Sum_probs=36.1
Q ss_pred HhhhhccCcchHHHHHHHHHhCccccCccccHHHHhhhc------------CccccccCCC-CCCchhhhHHhhccccC
Q 037106 53 CWNMLMELKSCSNEIVIFFLNSQTNIGLDCCRAIDIITR------------NCGPAMLTSL-GFTAEEGNILRGYCDAS 118 (145)
Q Consensus 53 CWssl~~v~gC~~EI~~sflnG~~~LGp~CC~AI~~I~~------------~CWP~mfp~~-~F~p~e~~~LKg~C~~~ 118 (145)
|=+.+.++..|..- +.|.....++||.+++.+.. .|.-...... ++.+.-+.-|=+.|.-.
T Consensus 3 C~~v~~~L~pCl~y-----~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~ 76 (90)
T 1bwo_A 3 CGHVDSLVRPCLSY-----VQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVN 76 (90)
T ss_dssp HHHHHHHHGGGHHH-----HTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCC
T ss_pred HHHHHHhhcccHHH-----HcCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCC
Confidence 44555566667643 33333377789999998752 4542222322 56666566777888654
No 4
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=10.77 E-value=87 Score=21.15 Aligned_cols=61 Identities=18% Similarity=0.470 Sum_probs=35.9
Q ss_pred HhhhhccCcchHHHHHHHHHhCcc-ccCccccHHHHhhh----------c--CccccccCCC-CCCchhhhHHhhccccC
Q 037106 53 CWNMLMELKSCSNEIVIFFLNSQT-NIGLDCCRAIDIIT----------R--NCGPAMLTSL-GFTAEEGNILRGYCDAS 118 (145)
Q Consensus 53 CWssl~~v~gC~~EI~~sflnG~~-~LGp~CC~AI~~I~----------~--~CWP~mfp~~-~F~p~e~~~LKg~C~~~ 118 (145)
|=+.+..+..|.. ++.|.. .-.++||.+++.+. . .|.-...... ++.+.-+.-|-+.|.-.
T Consensus 4 C~~v~~~L~pCl~-----y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~ 78 (93)
T 1afh_A 4 CGQVASAIAPCIS-----YARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS 78 (93)
T ss_dssp SHHHHHHHGGGHH-----HHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred hHHHHHhccCcHH-----HHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCC
Confidence 4455556666663 344444 55668999999985 2 3442222222 56666566777888654
No 5
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=9.40 E-value=72 Score=23.67 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=7.0
Q ss_pred ccCccccH
Q 037106 77 NIGLDCCR 84 (145)
Q Consensus 77 ~LGp~CC~ 84 (145)
-+||+||-
T Consensus 84 iLGPdCcI 91 (131)
T 1ebo_A 84 ILGPDCRI 91 (131)
T ss_dssp HHGGGGGC
T ss_pred ecCCcccc
Confidence 69999994
No 6
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=8.99 E-value=59 Score=18.90 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=8.1
Q ss_pred cCccccccCCC
Q 037106 91 RNCGPAMLTSL 101 (145)
Q Consensus 91 ~~CWP~mfp~~ 101 (145)
-+|||.+-|..
T Consensus 17 crcwptvtpgv 27 (33)
T 2knp_A 17 CRCWPTVTPGV 27 (33)
T ss_dssp CCEEECSSTTE
T ss_pred eeeccccCCCe
Confidence 47999887653
No 7
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=8.91 E-value=1e+02 Score=20.78 Aligned_cols=61 Identities=23% Similarity=0.491 Sum_probs=37.6
Q ss_pred HhhhhccCcchHHHHHHHHHhCccccCccccHHHHhhh-------c-----CccccccCCC-CCCchhhhHHhhccccC
Q 037106 53 CWNMLMELKSCSNEIVIFFLNSQTNIGLDCCRAIDIIT-------R-----NCGPAMLTSL-GFTAEEGNILRGYCDAS 118 (145)
Q Consensus 53 CWssl~~v~gC~~EI~~sflnG~~~LGp~CC~AI~~I~-------~-----~CWP~mfp~~-~F~p~e~~~LKg~C~~~ 118 (145)
|=..+.++..|..-+. .|. ...++||.+++.+. | .|.-...+.. ++.+.-+.-|-+.|.-.
T Consensus 4 C~~v~~~L~pCl~y~~----~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~ 77 (92)
T 2alg_A 4 CGQVSSSLAPCIPYVR----GGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVS 77 (92)
T ss_dssp HHHHHHHHGGGHHHHH----HCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCC
T ss_pred hHHHHHhccCcHHHHc----CCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCC
Confidence 5555666677775443 233 46779999999875 3 3442222222 56676667788888664
No 8
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=8.70 E-value=1.2e+02 Score=18.09 Aligned_cols=16 Identities=25% Similarity=0.162 Sum_probs=12.1
Q ss_pred CCCCchhhhHHhhccc
Q 037106 101 LGFTAEEGNILRGYCD 116 (145)
Q Consensus 101 ~~F~p~e~~~LKg~C~ 116 (145)
-+|++||.+.|...-.
T Consensus 3 ~~WT~eEd~~L~~~v~ 18 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVR 18 (53)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 3689999998886543
No 9
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=8.01 E-value=1.2e+02 Score=20.01 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=12.3
Q ss_pred CCCCCchhhhHHhhc
Q 037106 100 SLGFTAEEGNILRGY 114 (145)
Q Consensus 100 ~~~F~p~e~~~LKg~ 114 (145)
.-+|++||.++|...
T Consensus 23 k~~wT~EED~~L~~l 37 (73)
T 2llk_A 23 VGKYTPEEIEKLKEL 37 (73)
T ss_dssp CCSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 358999999998764
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=7.24 E-value=1.5e+02 Score=17.97 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=13.1
Q ss_pred CCCCchhhhHHhhcccc
Q 037106 101 LGFTAEEGNILRGYCDA 117 (145)
Q Consensus 101 ~~F~p~e~~~LKg~C~~ 117 (145)
-+|++||.+.|+..-..
T Consensus 9 ~~Wt~eED~~L~~~v~~ 25 (60)
T 2d9a_A 9 VKWTHEEDEQLRALVRQ 25 (60)
T ss_dssp SCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999775443
Done!