Query 037106
Match_columns 145
No_of_seqs 98 out of 100
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 14:38:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037106.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037106hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 25.0 13 0.00092 23.9 1.3 63 52-119 3-79 (93)
2 d1mida_ a.52.1.1 (A:) Plant no 21.5 17 0.0012 23.2 1.4 62 53-119 3-77 (91)
3 d1gvda_ a.4.1.3 (A:) c-Myb, DN 12.7 31 0.0023 19.6 0.9 17 101-117 4-20 (52)
4 d1gv2a2 a.4.1.3 (A:144-190) c- 11.4 38 0.0027 19.0 0.9 17 101-117 2-18 (47)
5 d1w0ta_ a.4.1.4 (A:) DNA-bindi 9.3 49 0.0036 18.7 0.9 16 102-117 4-19 (52)
6 d1hssa_ a.52.1.2 (A:) 0.19 alp 8.1 61 0.0044 22.2 1.1 35 59-94 12-49 (120)
7 d1w0ua_ a.4.1.4 (A:) Telomeric 7.6 64 0.0047 18.3 0.9 16 102-117 4-19 (55)
8 d1k8rb_ d.15.1.5 (B:) Protein 7.4 81 0.0059 20.7 1.5 17 57-73 14-30 (95)
9 d1guua_ a.4.1.3 (A:) c-Myb, DN 6.8 74 0.0054 17.6 0.9 16 102-117 3-18 (50)
10 d2bo9b1 d.17.1.5 (B:1-98) Late 6.7 33 0.0024 22.9 -0.8 11 135-145 29-39 (98)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=24.96 E-value=13 Score=23.90 Aligned_cols=63 Identities=17% Similarity=0.404 Sum_probs=38.5
Q ss_pred hHhhhhccCcchHHHHHHHHHhCcc-ccCccccHHHHhhhc------------CccccccC-CCCCCchhhhHHhhcccc
Q 037106 52 ECWNMLMELKSCSNEIVIFFLNSQT-NIGLDCCRAIDIITR------------NCGPAMLT-SLGFTAEEGNILRGYCDA 117 (145)
Q Consensus 52 ~CWssl~~v~gC~~EI~~sflnG~~-~LGp~CC~AI~~I~~------------~CWP~mfp-~~~F~p~e~~~LKg~C~~ 117 (145)
+|=+.+.++-.|. .|++|.. .-++.||.+++.+.+ +|.-.... ..++.+.-..-|=..|.-
T Consensus 3 ~C~~v~~~l~pCl-----~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v 77 (93)
T d1fk5a_ 3 SCGQVASAIAPCI-----SYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGV 77 (93)
T ss_dssp CHHHHHHHHGGGH-----HHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHhhhhH-----HHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCC
Confidence 3555556666666 3566666 678899999998763 22322222 345666656667788865
Q ss_pred CC
Q 037106 118 SS 119 (145)
Q Consensus 118 ~~ 119 (145)
..
T Consensus 78 ~l 79 (93)
T d1fk5a_ 78 SI 79 (93)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 2
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=21.46 E-value=17 Score=23.19 Aligned_cols=62 Identities=10% Similarity=0.305 Sum_probs=37.8
Q ss_pred HhhhhccCcchHHHHHHHHHhCccccCccccHHHHhhhc--------Cc----ccccc-CCCCCCchhhhHHhhccccCC
Q 037106 53 CWNMLMELKSCSNEIVIFFLNSQTNIGLDCCRAIDIITR--------NC----GPAML-TSLGFTAEEGNILRGYCDASS 119 (145)
Q Consensus 53 CWssl~~v~gC~~EI~~sflnG~~~LGp~CC~AI~~I~~--------~C----WP~mf-p~~~F~p~e~~~LKg~C~~~~ 119 (145)
|=+.+..+-.|. .|++|.....+.||.+++.+.. +| .-..- ...+....-..-|=+.|.-..
T Consensus 3 C~~v~~~l~pCl-----~Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~~ 77 (91)
T d1mida_ 3 CGQVDSKMKPCL-----TYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNV 77 (91)
T ss_dssp HHHHHHHHGGGH-----HHHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhhH-----HHHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCCC
Confidence 555556666666 3556666788999999988753 23 32222 123455555667778886543
No 3
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.70 E-value=31 Score=19.65 Aligned_cols=17 Identities=24% Similarity=0.126 Sum_probs=13.8
Q ss_pred CCCCchhhhHHhhcccc
Q 037106 101 LGFTAEEGNILRGYCDA 117 (145)
Q Consensus 101 ~~F~p~e~~~LKg~C~~ 117 (145)
-+++++|.+.|+..-..
T Consensus 4 g~WT~eED~~L~~~v~~ 20 (52)
T d1gvda_ 4 GPWTKEEDQRLIKLVQK 20 (52)
T ss_dssp CSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 37899999999987554
No 4
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.45 E-value=38 Score=18.97 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=13.2
Q ss_pred CCCCchhhhHHhhcccc
Q 037106 101 LGFTAEEGNILRGYCDA 117 (145)
Q Consensus 101 ~~F~p~e~~~LKg~C~~ 117 (145)
.+|++||.++|...-..
T Consensus 2 ~~WT~eED~~L~~~v~~ 18 (47)
T d1gv2a2 2 TSWTEEEDRIIYQAHKR 18 (47)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 37899999999876544
No 5
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.32 E-value=49 Score=18.67 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=13.0
Q ss_pred CCCchhhhHHhhcccc
Q 037106 102 GFTAEEGNILRGYCDA 117 (145)
Q Consensus 102 ~F~p~e~~~LKg~C~~ 117 (145)
++++||.+.|+..-..
T Consensus 4 ~WT~eED~~L~~~v~~ 19 (52)
T d1w0ta_ 4 AWLWEEDKNLRSGVRK 19 (52)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6899999999876554
No 6
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=8.08 E-value=61 Score=22.19 Aligned_cols=35 Identities=23% Similarity=0.518 Sum_probs=22.0
Q ss_pred cCcchHHHHHHHHHhCcc---ccCccccHHHHhhhcCcc
Q 037106 59 ELKSCSNEIVIFFLNSQT---NIGLDCCRAIDIITRNCG 94 (145)
Q Consensus 59 ~v~gC~~EI~~sflnG~~---~LGp~CC~AI~~I~~~CW 94 (145)
-+++|-..+.+- ..|.. .+-..||+-+..|.+.|+
T Consensus 12 pL~~CR~yv~~q-~~G~~~~~~~k~~CC~eLa~i~~~CR 49 (120)
T d1hssa_ 12 ALPACRPLLRLQ-CNGSQVPEAVLRDCCQQLAHISEWCR 49 (120)
T ss_dssp CCTTHHHHHHHH-TTTCCCCHHHHHHHHHHHHTSCTTTH
T ss_pred ccHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCcccc
Confidence 355666555443 33322 455778888888888885
No 7
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.61 E-value=64 Score=18.28 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=12.5
Q ss_pred CCCchhhhHHhhcccc
Q 037106 102 GFTAEEGNILRGYCDA 117 (145)
Q Consensus 102 ~F~p~e~~~LKg~C~~ 117 (145)
+|++||.+.|+..-..
T Consensus 4 ~WT~eEd~~L~~~V~~ 19 (55)
T d1w0ua_ 4 KWTVEESEWVKAGVQK 19 (55)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6899999999876443
No 8
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=7.39 E-value=81 Score=20.71 Aligned_cols=17 Identities=6% Similarity=0.077 Sum_probs=13.5
Q ss_pred hccCcchHHHHHHHHHh
Q 037106 57 LMELKSCSNEIVIFFLN 73 (145)
Q Consensus 57 l~~v~gC~~EI~~sfln 73 (145)
..++.||.+||+.-.+.
T Consensus 14 ~vni~gC~~ai~~~~Lk 30 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIALK 30 (95)
T ss_dssp EEECCSCHHHHHHHHHH
T ss_pred EEEeccCHHHHHHHHHH
Confidence 67899999998876544
No 9
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.85 E-value=74 Score=17.58 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=12.9
Q ss_pred CCCchhhhHHhhcccc
Q 037106 102 GFTAEEGNILRGYCDA 117 (145)
Q Consensus 102 ~F~p~e~~~LKg~C~~ 117 (145)
.|+++|.+.|+..-..
T Consensus 3 ~WT~eED~~L~~~v~~ 18 (50)
T d1guua_ 3 RWTREEDEKLKKLVEQ 18 (50)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5889999999887554
No 10
>d2bo9b1 d.17.1.5 (B:1-98) Latexin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.73 E-value=33 Score=22.92 Aligned_cols=11 Identities=45% Similarity=0.748 Sum_probs=8.7
Q ss_pred eeeeccccccC
Q 037106 135 SKVFGLDKVHQ 145 (145)
Q Consensus 135 ~~~~~~~~~~~ 145 (145)
.|+|+|++|||
T Consensus 29 ~rl~~L~~V~~ 39 (98)
T d2bo9b1 29 HRVFEVQKVKQ 39 (98)
T ss_dssp TBCEEEEEEEE
T ss_pred ceeeehhHHHh
Confidence 57888888875
Done!