BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037108
(239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2
PE=1 SV=1
Length = 970
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Query: 15 TDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAA 74
+ SL MP IG LT L+T+ +FVVG + G L +L +L +L G++ IS LE VK A
Sbjct: 606 SQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQLGELGNL-NLYGSIKISHLERVKNDKDA 664
Query: 75 KEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGG 128
KEA L+ K NL L + WNN +I E E + VL+ LKPH +L LKI G+ G
Sbjct: 665 KEANLSAKGNLHSLSMSWNNFGPHIYESE-EVKVLEALKPHSNLTSLKIYGFRG 717
>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum
GN=RGA1 PE=2 SV=2
Length = 979
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 5/114 (4%)
Query: 17 SLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKE 76
SL P IG LT L+++ FV+G G L +LK+L +L G++ I++L+ VK+ + AKE
Sbjct: 607 SLTSTPPRIGLLTCLKSLSCFVIGKRKGHQLGELKNL-NLYGSISITKLDRVKKDTDAKE 665
Query: 77 AQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK 130
A L+ K NL L L W+ + D+ VL+ LKPH +LK L+ING+GG +
Sbjct: 666 ANLSAKANLHSLCLSWDLDGKH----RYDSEVLEALKPHSNLKYLEINGFGGIR 715
>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis
thaliana GN=At3g14460 PE=3 SV=1
Length = 1424
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 70/133 (52%), Gaps = 10/133 (7%)
Query: 18 LEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEA 77
L EMP GI KL SL+ + FV+G G+GL +LK L HL+GT+ IS L+NV S AK+A
Sbjct: 655 LVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDA 714
Query: 78 QLNGKRNLKDLLLEWNNSTSNIREPETD--TC----VLDLLKPHQSLKKLKINGYGGTKF 131
L K L L+L+W S + C VL +L+PH LK I Y G F
Sbjct: 715 GLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAF 774
Query: 132 AIYTLSITGDSLF 144
+ GDS F
Sbjct: 775 PKW----LGDSSF 783
>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis
thaliana GN=RPPL1 PE=3 SV=1
Length = 1054
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 11/152 (7%)
Query: 1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTV 60
+ NLI L +L+ T L +MP+ G+L SL+T+ F V GS + +L L L G +
Sbjct: 645 ISNLINLRYLDLIGT-KLRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKL 703
Query: 61 CISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTS------NIREPETDTCVLDLLKP 114
I L+ V +++ A EA LN K++L+++ W +S N + + V + L+P
Sbjct: 704 KIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRP 763
Query: 115 HQSLKKLKINGYGGTKFAIYTLSITGDSLFSR 146
H+ ++KL I Y G +F + D FSR
Sbjct: 764 HRHIEKLAIERYKGRRFPDW----LSDPSFSR 791
>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum
GN=RGA4 PE=2 SV=1
Length = 988
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 18 LEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEA 77
L P IG LT L+T+ F+VG++ G L +LK+L +L G++ I+ LE VK + A EA
Sbjct: 609 LTSTPPRIGLLTCLKTLGFFIVGSKKGYQLGELKNL-NLCGSISITHLERVKNDTDA-EA 666
Query: 78 QLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKF 131
L+ K NL+ L + W+N N R + VL+ LKPH +LK L+I +GG +F
Sbjct: 667 NLSAKANLQSLSMSWDNDGPN-RYESKEVKVLEALKPHPNLKYLEIIAFGGFRF 719
>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum
GN=RGA3 PE=2 SV=2
Length = 992
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 18 LEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEA 77
L MP IG LT L+T+ FVVG G L +L++L +L+G + I+ LE VK AKEA
Sbjct: 617 LTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNL-NLRGAISITHLERVKNDMEAKEA 675
Query: 78 QLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGG 128
L+ K NL L + W+ R + VL+ LKPH +LK L+I + G
Sbjct: 676 NLSAKANLHSLSMSWDRPN---RYESEEVKVLEALKPHPNLKYLEIIDFCG 723
>sp|C8V4D4|GRRA_EMENI SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=grrA PE=2 SV=1
Length = 585
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 118 LKKLKINGYGG-TKFAIYTLSITGDSLFSRYARMGKWIPHGSGKS-DEGLADLRELFLVS 175
LK+LK+NG T AI + + S+ + K + + S + L +LREL L
Sbjct: 242 LKRLKLNGVSQVTDKAILSFAQNCPSILEIDLQECKLVTNQSVTALMTTLQNLRELRLAH 301
Query: 176 CSKLQRTLLEYLP------SLETLVIRKCEQL-------LVSILSLPTLRKLTVNGCKEV 222
C+++ + LP SL L + CE + +VS S P LR L + CK +
Sbjct: 302 CTEIDDSAFLDLPRHIQMTSLRILDLTACENIRDEAVERIVS--SAPRLRNLVLAKCKFI 359
Query: 223 VGRAI 227
RA+
Sbjct: 360 TDRAV 364
>sp|Q8YA32|INLI_LISMO Internalin-I OS=Listeria monocytogenes serovar 1/2a (strain ATCC
BAA-679 / EGD-e) GN=inlI PE=4 SV=1
Length = 1778
Score = 34.3 bits (77), Expect = 0.83, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 161 SDEGLADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQL--LVSILSLPTLRKLTVNG 218
S + L +L + SC+ L LP L+TLV+ E L + +I LP L+ LT++G
Sbjct: 362 SLKNLPNLVNITADSCAIEDLGTLNNLPKLQTLVLSDNENLTNITAITDLPQLKTLTLDG 421
Query: 219 C 219
C
Sbjct: 422 C 422
>sp|A9A9J5|Y1205_METM6 UPF0597 protein MmarC6_1205 OS=Methanococcus maripaludis (strain C6
/ ATCC BAA-1332) GN=MmarC6_1205 PE=3 SV=1
Length = 396
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 16 DSLEEMPQGIGKLT--SLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRL--ENVKEI 71
D L+E+P+ IGKL +++T + G+ + G L +++ + C +R+ EN+ +
Sbjct: 174 DYLDEIPEKIGKLVEKTVQTNKNLIKGDFLNYGTDILSIIVNKTTSACNTRMTGENMPAM 233
Query: 72 SAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLL 112
S AK + L ++ +++ST N E + +L +L
Sbjct: 234 SVAKSGNMGIMATLP--IISYDSSTENNSEKLIKSVLLSML 272
>sp|Q6L3L0|R1B23_SOLDE Putative late blight resistance protein homolog R1B-23 OS=Solanum
demissum GN=R1B-23 PE=3 SV=1
Length = 1262
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 34/151 (22%)
Query: 109 LDLLKPHQS--------------LKKLKING-YGGTKFAIYTLSITGDSLFS------RY 147
L++LK HQS LK L+++G Y +++ LS T D L Y
Sbjct: 1039 LEMLKLHQSNIFKPISFCISAPNLKYLELSGFYLDSQY----LSETADHLKHLEVLKLYY 1094
Query: 148 ARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCEQLL--- 202
G H K G+ ++ + C L + ++ + P+LE LV+R+C L+
Sbjct: 1095 VEFGD---HREWKVSNGMFPQLKILKLKCVSLLKWIVADDAFPNLEQLVLRRCRHLMEIP 1151
Query: 203 VSILSLPTLRKLTVNGCKE-VVGRAINLSSS 232
+ + +L+ + V C E VV A+N+ +
Sbjct: 1152 SCFMDILSLQYIEVENCNESVVKSAMNIQET 1182
>sp|Q6UWE0|LRSM1_HUMAN E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens GN=LRSAM1 PE=1
SV=1
Length = 723
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEI 43
+GNL +L LN + L+E+P +G+L SLRT+ + GNEI
Sbjct: 123 IGNLTQLQTLNV-KDNKLKELPDTVGELRSLRTLN--ISGNEI 162
>sp|Q6L3N7|R1C3_SOLDE Putative late blight resistance protein homolog R1C-3 OS=Solanum
demissum GN=R1C-3 PE=3 SV=1
Length = 1292
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 34/151 (22%)
Query: 109 LDLLKPHQS--------------LKKLKING-YGGTKFAIYTLSITGDSLFS------RY 147
L++LK HQS LK L+++G Y +++ LS T D L Y
Sbjct: 1069 LEMLKLHQSNIFNPISFCISAPNLKYLELSGFYLDSQY----LSETADHLKHLEVLKLYY 1124
Query: 148 ARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCEQLL--- 202
G H K G+ ++ + C L + ++ + P+LE LV+R C L+
Sbjct: 1125 VEFGD---HREWKVSNGMFPQLKILKLKCVSLLKWIVADDAFPNLEQLVLRGCRHLMEIP 1181
Query: 203 VSILSLPTLRKLTVNGCKE-VVGRAINLSSS 232
+ + +L+ + V C E VV A+N+ +
Sbjct: 1182 SCFMDILSLQYIEVENCNESVVKSAMNIQET 1212
>sp|Q2UUI3|CCR4_ASPOR Glucose-repressible alcohol dehydrogenase transcriptional effector
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=ccr4 PE=3 SV=1
Length = 746
Score = 32.0 bits (71), Expect = 4.5, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKF 37
+G L KL HL+ D L E+P+ IG LTSL+ + F
Sbjct: 267 IGQLRKLEHLDLSGND-LTELPEEIGMLTSLKKLYLF 302
>sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3
PE=1 SV=2
Length = 1580
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 55 HLQGTVCISRLENVKEISAA-KEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLK 113
HL VC+ ++ + KE S KE + K L+D+L ST + P+ D ++DL +
Sbjct: 326 HLAAEVCLEKISDTKEESETYKECSMVCKEFLEDIL-----STIGVYLPQDDKSLVDLQQ 380
Query: 114 PHQS 117
H S
Sbjct: 381 NHLS 384
>sp|Q9QZH7|FXL20_RAT F-box/LRR-repeat protein 20 OS=Rattus norvegicus GN=Fbxl20 PE=1
SV=1
Length = 276
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 164 GLADLRELFLVSCSKLQRTLLEYL----PSLETLVIRKCEQL----LVSIL-SLPTLRKL 214
G L+ LFL C++L+ L+Y+ P L TL ++ C Q+ L++I L+ L
Sbjct: 193 GCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSL 252
Query: 215 TVNGCKEVVGRAIN 228
+GC + +N
Sbjct: 253 CASGCSNITDAILN 266
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,406,910
Number of Sequences: 539616
Number of extensions: 3454798
Number of successful extensions: 8227
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 8196
Number of HSP's gapped (non-prelim): 47
length of query: 239
length of database: 191,569,459
effective HSP length: 114
effective length of query: 125
effective length of database: 130,053,235
effective search space: 16256654375
effective search space used: 16256654375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)