Query 037108
Match_columns 239
No_of_seqs 148 out of 1166
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:45:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.5 3E-13 6.5E-18 127.7 11.0 79 159-238 795-898 (1153)
2 PLN00113 leucine-rich repeat r 99.4 1.4E-13 3.1E-18 128.5 7.1 111 2-127 137-247 (968)
3 PLN00113 leucine-rich repeat r 99.4 4.2E-13 9.2E-18 125.3 7.8 218 3-238 116-361 (968)
4 PLN03210 Resistant to P. syrin 99.2 5.3E-11 1.1E-15 112.7 11.3 212 4-236 610-852 (1153)
5 KOG4658 Apoptotic ATPase [Sign 99.1 7.5E-11 1.6E-15 107.5 4.4 67 162-228 766-848 (889)
6 KOG0444 Cytoskeletal regulator 99.0 4.7E-11 1E-15 102.2 -1.7 216 3-236 148-389 (1255)
7 KOG4658 Apoptotic ATPase [Sign 98.9 5.4E-10 1.2E-14 102.0 3.2 111 3-127 569-679 (889)
8 KOG0444 Cytoskeletal regulator 98.6 9E-10 2E-14 94.6 -5.0 115 4-135 31-145 (1255)
9 cd00116 LRR_RI Leucine-rich re 98.4 8.8E-08 1.9E-12 78.5 2.0 208 3-220 49-289 (319)
10 KOG0617 Ras suppressor protein 98.3 1.6E-08 3.4E-13 73.7 -4.1 82 3-94 31-113 (264)
11 cd00116 LRR_RI Leucine-rich re 98.3 4E-07 8.6E-12 74.6 2.5 209 3-221 21-262 (319)
12 KOG0617 Ras suppressor protein 98.3 1.3E-08 2.9E-13 74.1 -5.5 139 1-185 52-190 (264)
13 KOG4194 Membrane glycoprotein 98.2 6.6E-07 1.4E-11 76.7 1.8 33 3-36 100-132 (873)
14 KOG0472 Leucine-rich repeat pr 98.1 1.5E-08 3.3E-13 82.8 -8.8 57 2-62 65-121 (565)
15 KOG0472 Leucine-rich repeat pr 98.0 4.8E-08 1E-12 79.9 -7.2 54 164-220 250-308 (565)
16 KOG0618 Serine/threonine phosp 98.0 7.7E-07 1.7E-11 79.7 -1.5 37 160-198 377-417 (1081)
17 PF12799 LRR_4: Leucine Rich r 98.0 4.4E-06 9.5E-11 47.3 2.0 32 5-37 1-32 (44)
18 KOG2120 SCF ubiquitin ligase, 97.9 2.4E-07 5.2E-12 73.2 -5.0 138 50-220 230-374 (419)
19 KOG4194 Membrane glycoprotein 97.9 9.8E-06 2.1E-10 69.7 4.1 202 8-237 81-297 (873)
20 KOG0618 Serine/threonine phosp 97.9 8.4E-07 1.8E-11 79.5 -2.5 114 73-202 373-490 (1081)
21 PRK15370 E3 ubiquitin-protein 97.9 2.7E-05 5.9E-10 70.7 6.9 181 6-227 200-384 (754)
22 PRK15370 E3 ubiquitin-protein 97.9 9.1E-06 2E-10 73.7 2.8 183 5-227 220-405 (754)
23 PRK15387 E3 ubiquitin-protein 97.8 0.00013 2.8E-09 66.3 9.3 28 7-37 203-230 (788)
24 PRK15387 E3 ubiquitin-protein 97.8 0.00011 2.4E-09 66.7 8.7 29 6-38 223-251 (788)
25 PF13855 LRR_8: Leucine rich r 97.8 7.7E-05 1.7E-09 45.4 5.1 53 166-220 1-60 (61)
26 PF14580 LRR_9: Leucine-rich r 97.6 5.3E-05 1.1E-09 56.5 2.9 14 186-199 111-124 (175)
27 PF14580 LRR_9: Leucine-rich r 97.6 7.6E-06 1.6E-10 60.9 -1.7 112 3-132 17-129 (175)
28 KOG3665 ZYG-1-like serine/thre 97.5 6.8E-05 1.5E-09 67.5 2.8 86 3-92 171-259 (699)
29 PF13855 LRR_8: Leucine rich r 97.4 0.00038 8.3E-09 42.2 4.4 38 160-199 19-60 (61)
30 PF00560 LRR_1: Leucine Rich R 97.3 6.7E-05 1.4E-09 35.6 0.6 22 6-28 1-22 (22)
31 KOG4237 Extracellular matrix p 97.2 2E-05 4.4E-10 64.7 -3.0 74 162-236 270-349 (498)
32 KOG3207 Beta-tubulin folding c 97.2 0.00012 2.5E-09 61.0 1.2 36 2-38 118-155 (505)
33 KOG1909 Ran GTPase-activating 97.2 0.00017 3.8E-09 58.3 1.9 187 6-221 93-310 (382)
34 PRK15386 type III secretion pr 97.2 0.0012 2.6E-08 55.6 6.8 14 115-128 71-84 (426)
35 KOG3207 Beta-tubulin folding c 97.0 0.00016 3.4E-09 60.3 -0.3 36 162-199 267-312 (505)
36 KOG2120 SCF ubiquitin ligase, 97.0 5E-05 1.1E-09 60.4 -3.2 128 78-223 205-352 (419)
37 PRK15386 type III secretion pr 96.7 0.0017 3.6E-08 54.7 3.7 61 166-230 72-135 (426)
38 COG4886 Leucine-rich repeat (L 96.4 0.0036 7.8E-08 53.0 4.2 59 162-222 228-290 (394)
39 PLN03150 hypothetical protein; 96.3 0.0037 8E-08 56.2 3.4 82 7-94 420-501 (623)
40 PF12799 LRR_4: Leucine Rich r 96.2 0.0082 1.8E-07 33.7 3.4 15 205-219 20-34 (44)
41 PLN03150 hypothetical protein; 96.2 0.004 8.6E-08 56.0 3.1 63 1-65 438-500 (623)
42 KOG1259 Nischarin, modulator o 96.0 0.0011 2.4E-08 53.1 -1.2 126 6-177 285-410 (490)
43 COG4886 Leucine-rich repeat (L 95.8 0.0061 1.3E-07 51.6 2.4 169 3-197 114-286 (394)
44 PF13504 LRR_7: Leucine rich r 95.7 0.0058 1.3E-07 26.8 0.9 17 5-22 1-17 (17)
45 KOG4341 F-box protein containi 95.6 0.0013 2.8E-08 54.7 -2.1 87 6-96 139-229 (483)
46 KOG4237 Extracellular matrix p 95.6 0.0015 3.4E-08 54.0 -1.7 51 186-236 272-325 (498)
47 KOG3665 ZYG-1-like serine/thre 95.6 0.0071 1.5E-07 54.8 2.1 91 27-127 171-261 (699)
48 KOG3864 Uncharacterized conser 95.5 0.0025 5.4E-08 48.0 -0.8 59 164-222 123-189 (221)
49 smart00370 LRR Leucine-rich re 94.9 0.019 4.2E-07 28.0 1.6 22 4-26 1-22 (26)
50 smart00369 LRR_TYP Leucine-ric 94.9 0.019 4.2E-07 28.0 1.6 22 4-26 1-22 (26)
51 KOG0532 Leucine-rich repeat (L 93.7 0.014 3.1E-07 50.7 -0.6 105 8-132 146-250 (722)
52 KOG0532 Leucine-rich repeat (L 93.7 0.012 2.7E-07 51.1 -1.0 30 6-36 99-128 (722)
53 KOG2739 Leucine-rich acidic nu 93.3 0.027 5.8E-07 44.2 0.3 11 27-37 63-73 (260)
54 KOG1644 U2-associated snRNP A' 92.4 0.34 7.3E-06 36.9 5.0 14 205-218 136-149 (233)
55 KOG3864 Uncharacterized conser 91.6 0.024 5.3E-07 42.8 -1.8 56 145-201 130-189 (221)
56 KOG1909 Ran GTPase-activating 91.4 0.17 3.7E-06 41.6 2.6 207 4-220 29-281 (382)
57 KOG1259 Nischarin, modulator o 90.9 0.059 1.3E-06 43.5 -0.4 111 4-134 306-417 (490)
58 KOG0531 Protein phosphatase 1, 88.7 0.2 4.4E-06 42.8 1.2 35 2-37 92-126 (414)
59 KOG1859 Leucine-rich repeat pr 87.2 0.036 7.8E-07 49.8 -4.3 50 168-220 234-290 (1096)
60 KOG4341 F-box protein containi 85.1 0.066 1.4E-06 45.0 -3.5 56 165-220 163-227 (483)
61 KOG1947 Leucine rich repeat pr 84.9 0.48 1E-05 40.9 1.5 37 165-201 268-308 (482)
62 smart00367 LRR_CC Leucine-rich 84.3 0.62 1.3E-05 22.6 1.1 16 208-223 1-16 (26)
63 KOG0531 Protein phosphatase 1, 82.7 0.55 1.2E-05 40.2 0.9 35 2-38 115-149 (414)
64 KOG2982 Uncharacterized conser 82.7 0.53 1.2E-05 38.2 0.7 40 77-126 91-131 (418)
65 smart00364 LRR_BAC Leucine-ric 79.8 1.4 3E-05 21.6 1.3 18 5-23 2-19 (26)
66 KOG1644 U2-associated snRNP A' 79.2 0.96 2.1E-05 34.5 1.0 106 6-126 43-150 (233)
67 smart00365 LRR_SD22 Leucine-ri 77.6 2.1 4.5E-05 20.9 1.6 17 4-21 1-17 (26)
68 KOG2123 Uncharacterized conser 71.7 0.34 7.4E-06 38.9 -3.1 29 6-36 20-48 (388)
69 KOG2982 Uncharacterized conser 70.6 3.1 6.6E-05 34.0 1.9 54 164-218 95-155 (418)
70 KOG2739 Leucine-rich acidic nu 67.8 2.6 5.6E-05 33.4 0.9 91 21-128 35-128 (260)
71 smart00368 LRR_RI Leucine rich 66.9 4.7 0.0001 19.9 1.5 14 5-19 2-15 (28)
72 KOG4579 Leucine-rich repeat (L 66.0 0.77 1.7E-05 32.9 -2.0 33 165-199 76-111 (177)
73 PF13516 LRR_6: Leucine Rich r 63.4 4.8 0.0001 18.8 1.1 15 4-19 1-15 (24)
74 KOG1859 Leucine-rich repeat pr 63.1 1.4 3.1E-05 40.2 -1.3 30 5-36 187-216 (1096)
75 KOG1947 Leucine rich repeat pr 56.9 5.4 0.00012 34.4 1.1 59 164-222 241-308 (482)
76 KOG2123 Uncharacterized conser 48.6 2.3 5E-05 34.3 -2.2 53 3-57 39-91 (388)
77 COG5238 RNA1 Ran GTPase-activa 41.3 37 0.0008 27.6 3.4 36 4-39 91-130 (388)
78 PF13306 LRR_5: Leucine rich r 36.4 1.3E+02 0.0029 20.2 5.6 55 161-218 30-90 (129)
79 PF05725 FNIP: FNIP Repeat; I 28.4 97 0.0021 16.9 2.9 8 166-173 12-19 (44)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.46 E-value=3e-13 Score=127.66 Aligned_cols=79 Identities=29% Similarity=0.392 Sum_probs=56.6
Q ss_pred CCCCCcCCcccEEeeccCccccccccC--CCCcccEEEeccccccc-----------------------cccCCCCcccE
Q 037108 159 GKSDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCEQLL-----------------------VSILSLPTLRK 213 (239)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~~l~-----------------------~~~~~l~~L~~ 213 (239)
|..++.+++|+.|++.+|++++ .+|. .+++|+.|++++|..+. .++..+++|+.
T Consensus 795 P~si~~L~~L~~L~Ls~C~~L~-~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~ 873 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCINLE-TLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSF 873 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCCcC-eeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCE
Confidence 4456678888888888887776 7765 46778888887776542 12345778899
Q ss_pred EEecccCccccccccccCccceEee
Q 037108 214 LTVNGCKEVVGRAINLSSSSSVVLW 238 (239)
Q Consensus 214 L~i~~c~~l~~~~~~~~~l~~L~~~ 238 (239)
|++.+|+++...+....++++|+..
T Consensus 874 L~L~~C~~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 874 LDMNGCNNLQRVSLNISKLKHLETV 898 (1153)
T ss_pred EECCCCCCcCccCcccccccCCCee
Confidence 9999999988877766666666543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.44 E-value=1.4e-13 Score=128.50 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=61.6
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
+.+.+|++|++++|...+.+|..++++++|++|++..+.. .+.....++++++|+ .|++.+..- ....+..+.+
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~~~~l~~L~-~L~L~~n~l----~~~~p~~l~~ 210 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL-VGKIPNSLTNLTSLE-FLTLASNQL----VGQIPRELGQ 210 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc-cccCChhhhhCcCCC-eeeccCCCC----cCcCChHHcC
Confidence 3567788888888854446787788888888887754322 112233455666666 666543321 1122344556
Q ss_pred ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccC
Q 037108 82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYG 127 (239)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 127 (239)
+++|+.|+++++.... .++..+..+++|+.|++.++.
T Consensus 211 l~~L~~L~L~~n~l~~---------~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 211 MKSLKWIYLGYNNLSG---------EIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred cCCccEEECcCCccCC---------cCChhHhcCCCCCEEECcCce
Confidence 6667777666443211 122233444566666665543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.41 E-value=4.2e-13 Score=125.33 Aligned_cols=218 Identities=19% Similarity=0.104 Sum_probs=128.3
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK 82 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 82 (239)
++.+||+|++++|...+.+|. +.+.+|++|++..+.. .+.....++++++|+ .|++.+.. .....+..+.++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~-~~~~p~~~~~l~~L~-~L~L~~n~----l~~~~p~~~~~l 187 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML-SGEIPNDIGSFSSLK-VLDLGGNV----LVGKIPNSLTNL 187 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcc-cccCChHHhcCCCCC-EEECccCc----ccccCChhhhhC
Confidence 688999999999965556774 6799999998865432 233445678888888 88875433 222334556778
Q ss_pred cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCC-Cccchhhhcc--------Ccce---e-eeecc
Q 037108 83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGT-KFAIYTLSIT--------GDSL---F-SRYAR 149 (239)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~l~l~--------~~~~---~-L~l~~ 149 (239)
++|+.|+++.+... ...++.+..+.+|+.|++.++... ..|..+..+. ++.- . -.+..
T Consensus 188 ~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 188 TSLEFLTLASNQLV---------GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred cCCCeeeccCCCCc---------CcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC
Confidence 89999999865422 124556667789999999887644 3554442211 1000 0 01112
Q ss_pred CCCceeeC---------CCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc---cccccCCCCcccEE
Q 037108 150 MGKWIPHG---------SGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ---LLVSILSLPTLRKL 214 (239)
Q Consensus 150 ~~~l~~~~---------~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L 214 (239)
+++++.+. .|..++.+++|++|++++| .+.+.+|. .+++|+.|++.++.- ++..+..+++|+.|
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 22222211 1233445666666766655 34445543 456677777766542 22345567777777
Q ss_pred EecccCccccccccccCccceEee
Q 037108 215 TVNGCKEVVGRAINLSSSSSVVLW 238 (239)
Q Consensus 215 ~i~~c~~l~~~~~~~~~l~~L~~~ 238 (239)
++.+|.-....+..+..+++|+.+
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L 361 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVL 361 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEE
Confidence 777776544455555555554443
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.24 E-value=5.3e-11 Score=112.67 Aligned_cols=212 Identities=20% Similarity=0.159 Sum_probs=115.3
Q ss_pred cccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 4 LIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
..+|+.|+++++ .+..+|.++..+++|++|++..+.. -..+..+..+++|+ .|.+.++.... ..+..+..++
T Consensus 610 ~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~--l~~ip~ls~l~~Le-~L~L~~c~~L~----~lp~si~~L~ 681 (1153)
T PLN03210 610 PENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKN--LKEIPDLSMATNLE-TLKLSDCSSLV----ELPSSIQYLN 681 (1153)
T ss_pred ccCCcEEECcCc-cccccccccccCCCCCEEECCCCCC--cCcCCccccCCccc-EEEecCCCCcc----ccchhhhccC
Confidence 356777777776 4677777777777777776643321 12233455566666 66665544322 2234455666
Q ss_pred ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEecc---------------------CCCCccchhhhccCcc
Q 037108 84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGY---------------------GGTKFAIYTLSITGDS 142 (239)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---------------------~~~~~p~~~l~l~~~~ 142 (239)
+|+.|.++.+..... ++... .+.+|+.|.+.+| ....+|..+ .+..-
T Consensus 682 ~L~~L~L~~c~~L~~---------Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L- 749 (1153)
T PLN03210 682 KLEDLDMSRCENLEI---------LPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENL- 749 (1153)
T ss_pred CCCEEeCCCCCCcCc---------cCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-ccccc-
Confidence 777777765432111 11111 2344555555544 322233211 00000
Q ss_pred eeeeeccCCCceeeCC-----CCCCCcCCcccEEeeccCccccccccC---CCCcccEEEeccccccccc--cCCCCccc
Q 037108 143 LFSRYARMGKWIPHGS-----GKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQLLVS--ILSLPTLR 212 (239)
Q Consensus 143 ~~L~l~~~~~l~~~~~-----~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~l~~~--~~~l~~L~ 212 (239)
..|.+..+.....|.. +.....+++|+.|++++|+.+. .+|. .+++|+.|++.+|.+++.. ...+++|+
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~ 828 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV-ELPSSIQNLHKLEHLEIENCINLETLPTGINLESLE 828 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCcc-ccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccC
Confidence 0011111111011100 0112235799999999998775 7875 6899999999999987431 11578999
Q ss_pred EEEecccCccccccccccCccceE
Q 037108 213 KLTVNGCKEVVGRAINLSSSSSVV 236 (239)
Q Consensus 213 ~L~i~~c~~l~~~~~~~~~l~~L~ 236 (239)
+|++++|.++...+....+++.|.
T Consensus 829 ~L~Ls~c~~L~~~p~~~~nL~~L~ 852 (1153)
T PLN03210 829 SLDLSGCSRLRTFPDISTNISDLN 852 (1153)
T ss_pred EEECCCCCccccccccccccCEeE
Confidence 999999988876665544444443
No 5
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.09 E-value=7.5e-11 Score=107.50 Aligned_cols=67 Identities=25% Similarity=0.262 Sum_probs=42.3
Q ss_pred CCcCCcccEEeeccCccccccccC------------CCCcccEE-Eeccccccccc--c-CCCCcccEEEecccCccccc
Q 037108 162 DEGLADLRELFLVSCSKLQRTLLE------------YLPSLETL-VIRKCEQLLVS--I-LSLPTLRKLTVNGCKEVVGR 225 (239)
Q Consensus 162 ~~~~~~L~~L~l~~~~~L~~~~p~------------~l~~L~~L-~l~~c~~l~~~--~-~~l~~L~~L~i~~c~~l~~~ 225 (239)
...+|+|+.|.+..|+.++..+|. .|++++.+ .+.+.+.+++. . -.+++|+++.+..||++...
T Consensus 766 ~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~ 845 (889)
T KOG4658|consen 766 LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKL 845 (889)
T ss_pred hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccC
Confidence 345789999999999887744442 34555555 35444444331 1 13456788888888888766
Q ss_pred ccc
Q 037108 226 AIN 228 (239)
Q Consensus 226 ~~~ 228 (239)
|..
T Consensus 846 P~~ 848 (889)
T KOG4658|consen 846 PLL 848 (889)
T ss_pred ccc
Confidence 654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.97 E-value=4.7e-11 Score=102.21 Aligned_cols=216 Identities=21% Similarity=0.244 Sum_probs=129.9
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK 82 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 82 (239)
+|+-|-+||++++ .+..+|+++.+|.+||+|++... +-..-+|.+|+.+. +|.+..+.+...-....+..+..+
T Consensus 148 nLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~N----PL~hfQLrQLPsmt-sL~vLhms~TqRTl~N~Ptsld~l 221 (1255)
T KOG0444|consen 148 NLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNN----PLNHFQLRQLPSMT-SLSVLHMSNTQRTLDNIPTSLDDL 221 (1255)
T ss_pred hhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCC----hhhHHHHhcCccch-hhhhhhcccccchhhcCCCchhhh
Confidence 5677889999999 58999999999999999987431 11222344444444 444444444333344555667777
Q ss_pred cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCc----cchh----hhccCc------ceeeeec
Q 037108 83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKF----AIYT----LSITGD------SLFSRYA 148 (239)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----p~~~----l~l~~~------~~~L~l~ 148 (239)
.||+.++++.++.. .+++.+-...+|+.|.++++....+ ..|- ++++-. .+.-.+.
T Consensus 222 ~NL~dvDlS~N~Lp----------~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~ 291 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLP----------IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLT 291 (1255)
T ss_pred hhhhhccccccCCC----------cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhH
Confidence 88888888755421 2344444556677777766543322 1221 010000 0000111
Q ss_pred cCCC-------ceeeCCCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--ccccccCCCCcccEEEe
Q 037108 149 RMGK-------WIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLVSILSLPTLRKLTV 216 (239)
Q Consensus 149 ~~~~-------l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i 216 (239)
.+.. +..-..|..+|.+.+|+.++..+. +|+ .+|+ ..++|+.|++.... -+++.+.-++-|+.|++
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred HHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeec
Confidence 1111 111113667788888998888854 786 8886 56889999886544 34567778899999999
Q ss_pred cccCccccccccccCccceE
Q 037108 217 NGCKEVVGRAINLSSSSSVV 236 (239)
Q Consensus 217 ~~c~~l~~~~~~~~~l~~L~ 236 (239)
+..|+|.+.|..-..-++|+
T Consensus 370 reNpnLVMPPKP~da~~~le 389 (1255)
T KOG0444|consen 370 RENPNLVMPPKPNDARKKLE 389 (1255)
T ss_pred cCCcCccCCCCcchhhhcce
Confidence 99999987766543334443
No 7
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=5.4e-10 Score=102.02 Aligned_cols=111 Identities=23% Similarity=0.223 Sum_probs=72.6
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK 82 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 82 (239)
.++.||.||+++|..+.++|++||+|.+|++|++..+.-. ..+..+++|..|. .|........... +.....+
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~-~Lnl~~~~~l~~~----~~i~~~L 641 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLI-YLNLEVTGRLESI----PGILLEL 641 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhh-eeccccccccccc----cchhhhc
Confidence 4889999999999889999999999999999988654421 2234455555555 5555443332222 2334457
Q ss_pred cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccC
Q 037108 83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYG 127 (239)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 127 (239)
++|+.|.+.... .......+..+..+.+|+.+.++...
T Consensus 642 ~~Lr~L~l~~s~-------~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 642 QSLRVLRLPRSA-------LSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccccEEEeeccc-------cccchhhHHhhhcccchhhheeecch
Confidence 889999887543 12233445556667777777775543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.62 E-value=9e-10 Score=94.56 Aligned_cols=115 Identities=17% Similarity=0.095 Sum_probs=64.8
Q ss_pred cccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 4 LIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
+++++.|.+..+ .+.++|++++.+++|++|......- ...-.+|..|+.|| ++.+.... -.....+..+-++.
T Consensus 31 Mt~~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN~L--~~vhGELs~Lp~LR-sv~~R~N~---LKnsGiP~diF~l~ 103 (1255)
T KOG0444|consen 31 MTQMTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHNQL--ISVHGELSDLPRLR-SVIVRDNN---LKNSGIPTDIFRLK 103 (1255)
T ss_pred hhheeEEEechh-hhhhChHHHHHHhhhhhhhhhhhhh--HhhhhhhccchhhH-HHhhhccc---cccCCCCchhcccc
Confidence 455666666666 4667777777777777775422111 11122344444444 33332111 11222344556666
Q ss_pred ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchh
Q 037108 84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYT 135 (239)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 135 (239)
.|..|+++.+. ..+++..+...++.-.|.+++++..++|..+
T Consensus 104 dLt~lDLShNq----------L~EvP~~LE~AKn~iVLNLS~N~IetIPn~l 145 (1255)
T KOG0444|consen 104 DLTILDLSHNQ----------LREVPTNLEYAKNSIVLNLSYNNIETIPNSL 145 (1255)
T ss_pred cceeeecchhh----------hhhcchhhhhhcCcEEEEcccCccccCCchH
Confidence 77777777432 3456666767778888888888887777543
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.43 E-value=8.8e-08 Score=78.46 Aligned_cols=208 Identities=19% Similarity=0.134 Sum_probs=97.2
Q ss_pred CcccCcEEeCCCCCCCc-------ccCccCCCCccCCccCceEeccCCCCChhhhcccc---cccceEEEEeccCCCChh
Q 037108 3 NLIKLHHLNNPSTDSLE-------EMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLI---HLQGTVCISRLENVKEIS 72 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~-------~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~---~L~~~L~~~~~~~~~~~~ 72 (239)
+.++|++|+++++. +. .++..++++.+|+.|++..+.... .....+..+. +|+ .+.+.+..-.....
T Consensus 49 ~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~~~~L~-~L~ls~~~~~~~~~ 125 (319)
T cd00116 49 PQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP-DGCGVLESLLRSSSLQ-ELKLNNNGLGDRGL 125 (319)
T ss_pred hCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCCh-hHHHHHHHHhccCccc-EEEeeCCccchHHH
Confidence 34557777777763 33 234556677777777764433211 1122233332 266 66665443211111
Q ss_pred HHHHhccCcc-cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC--ccchhhhccCcce--eeee
Q 037108 73 AAKEAQLNGK-RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK--FAIYTLSITGDSL--FSRY 147 (239)
Q Consensus 73 ~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~~l~l~~~~~--~L~l 147 (239)
......+..+ ++|+.|++..+.... .....+...+....+|+.|++.++.... .+.....+..... .+.+
T Consensus 126 ~~l~~~l~~~~~~L~~L~L~~n~l~~-----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L 200 (319)
T cd00116 126 RLLAKGLKDLPPALEKLVLGRNRLEG-----ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200 (319)
T ss_pred HHHHHHHHhCCCCceEEEcCCCcCCc-----hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEec
Confidence 2222334444 677777777554211 1122333344445577777777654321 0000000000000 0111
Q ss_pred ccCCCceeeC---CCCCCCcCCcccEEeeccCccccc----cccC----CCCcccEEEeccccc-------cccccCCCC
Q 037108 148 ARMGKWIPHG---SGKSDEGLADLRELFLVSCSKLQR----TLLE----YLPSLETLVIRKCEQ-------LLVSILSLP 209 (239)
Q Consensus 148 ~~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~L~~----~~p~----~l~~L~~L~l~~c~~-------l~~~~~~l~ 209 (239)
.++. +.... .......+++|++|++++| .+.+ .+.. ..+.|++|.+.+|.- +...++.++
T Consensus 201 ~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~ 278 (319)
T cd00116 201 NNNG-LTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE 278 (319)
T ss_pred cCCc-cChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCC
Confidence 1110 00000 0012335678888888876 3432 1111 236888888887752 123455667
Q ss_pred cccEEEecccC
Q 037108 210 TLRKLTVNGCK 220 (239)
Q Consensus 210 ~L~~L~i~~c~ 220 (239)
+|+++++++++
T Consensus 279 ~L~~l~l~~N~ 289 (319)
T cd00116 279 SLLELDLRGNK 289 (319)
T ss_pred CccEEECCCCC
Confidence 88888888764
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.33 E-value=1.6e-08 Score=73.72 Aligned_cols=82 Identities=18% Similarity=0.211 Sum_probs=48.6
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccC-CCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNE-IGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~-~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
++.+...|.++.+ .++.+|+.|..|++|++|+++...-. -+..+..+.+|++ +.+. +. .-...+..++.
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~----lnvg-mn----rl~~lprgfgs 100 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRI----LNVG-MN----RLNILPRGFGS 100 (264)
T ss_pred chhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhh----eecc-hh----hhhcCccccCC
Confidence 4456677888998 68999999999999999987653321 2233333333332 2221 11 12233455566
Q ss_pred ccccccceeEEcC
Q 037108 82 KRNLKDLLLEWNN 94 (239)
Q Consensus 82 l~~L~~L~l~~~~ 94 (239)
++.|+.|++.+++
T Consensus 101 ~p~levldltynn 113 (264)
T KOG0617|consen 101 FPALEVLDLTYNN 113 (264)
T ss_pred Cchhhhhhccccc
Confidence 6666666666554
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.28 E-value=4e-07 Score=74.59 Aligned_cols=209 Identities=19% Similarity=0.108 Sum_probs=111.2
Q ss_pred CcccCcEEeCCCCCCC-----cccCccCCCCccCCccCceEeccCC-CCC----hhhhcccccccceEEEEeccCCCChh
Q 037108 3 NLIKLHHLNNPSTDSL-----EEMPQGIGKLTSLRTMCKFVVGNEI-GSG----LRQLKSLIHLQGTVCISRLENVKEIS 72 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~-----~~lP~~i~~L~~L~~L~~~~~~~~~-~~~----i~~L~~L~~L~~~L~~~~~~~~~~~~ 72 (239)
.+.+|+.|++++|. + ..++..+.+.++|++|++....... ... ...++++++|+ .+++.+........
T Consensus 21 ~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~ 98 (319)
T cd00116 21 KLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ-ELDLSDNALGPDGC 98 (319)
T ss_pred HHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCcee-EEEccCCCCChhHH
Confidence 35669999999994 5 4477778888888988765433211 111 23456666777 77776543221111
Q ss_pred HHHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCC-CCcceEEEeccCCCCc-c-chhhhccCcce--eeee
Q 037108 73 AAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPH-QSLKKLKINGYGGTKF-A-IYTLSITGDSL--FSRY 147 (239)
Q Consensus 73 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~-p-~~~l~l~~~~~--~L~l 147 (239)
......... ++|+.|+++.+... ......+...+... ++|+.+++.++..... + .+...+.+... .+.+
T Consensus 99 ~~~~~l~~~-~~L~~L~ls~~~~~-----~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 99 GVLESLLRS-SSLQELKLNNNGLG-----DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred HHHHHHhcc-CcccEEEeeCCccc-----hHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 222222223 56999999865421 11222333445555 7999999998864421 1 11101110000 1222
Q ss_pred ccCCCceeeC---CCCCCCcCCcccEEeeccCccccc----cc---cCCCCcccEEEecccccc----ccccC----CCC
Q 037108 148 ARMGKWIPHG---SGKSDEGLADLRELFLVSCSKLQR----TL---LEYLPSLETLVIRKCEQL----LVSIL----SLP 209 (239)
Q Consensus 148 ~~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~L~~----~~---p~~l~~L~~L~l~~c~~l----~~~~~----~l~ 209 (239)
.++ ++..-. .+.....+++|++|++++|. +.+ .+ ...+++|++|++++|+-- ..... ..+
T Consensus 173 ~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~ 250 (319)
T cd00116 173 ANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250 (319)
T ss_pred cCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence 211 011000 00112235699999999873 321 11 125789999999987621 11111 247
Q ss_pred cccEEEecccCc
Q 037108 210 TLRKLTVNGCKE 221 (239)
Q Consensus 210 ~L~~L~i~~c~~ 221 (239)
.|++|++.+|.-
T Consensus 251 ~L~~L~l~~n~i 262 (319)
T cd00116 251 SLLTLSLSCNDI 262 (319)
T ss_pred CceEEEccCCCC
Confidence 899999999853
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.27 E-value=1.3e-08 Score=74.08 Aligned_cols=139 Identities=19% Similarity=0.167 Sum_probs=89.8
Q ss_pred CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108 1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN 80 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~ 80 (239)
|.+|++|+.|++.++ .++++|.+|..|++|+.|+..... -...+...+.++.|. .+++....- .....+..+-
T Consensus 52 ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr--l~~lprgfgs~p~le-vldltynnl---~e~~lpgnff 124 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR--LNILPRGFGSFPALE-VLDLTYNNL---NENSLPGNFF 124 (264)
T ss_pred HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh--hhcCccccCCCchhh-hhhcccccc---ccccCCcchh
Confidence 457899999999999 699999999999999999764221 112334556666555 444432211 1223344555
Q ss_pred cccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCC
Q 037108 81 GKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGK 160 (239)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~ 160 (239)
.+..|+.|+++.++ .+-++.....+.+|+.|.+..+....+|.
T Consensus 125 ~m~tlralyl~dnd----------fe~lp~dvg~lt~lqil~lrdndll~lpk--------------------------- 167 (264)
T KOG0617|consen 125 YMTTLRALYLGDND----------FEILPPDVGKLTNLQILSLRDNDLLSLPK--------------------------- 167 (264)
T ss_pred HHHHHHHHHhcCCC----------cccCChhhhhhcceeEEeeccCchhhCcH---------------------------
Confidence 66778888887543 23345555666788888777665544443
Q ss_pred CCCcCCcccEEeeccCccccccccC
Q 037108 161 SDEGLADLRELFLVSCSKLQRTLLE 185 (239)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~L~~~~p~ 185 (239)
.+|.+..|++|+|.+. .++ .+|.
T Consensus 168 eig~lt~lrelhiqgn-rl~-vlpp 190 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGN-RLT-VLPP 190 (264)
T ss_pred HHHHHHHHHHHhcccc-eee-ecCh
Confidence 3456778888888865 676 6653
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.18 E-value=6.6e-07 Score=76.67 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=16.9
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCccCCccCc
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCK 36 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~ 36 (239)
+|.+|+.+++..| .++.+|...+...+|+.|++
T Consensus 100 nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 100 NLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDL 132 (873)
T ss_pred cCCcceeeeeccc-hhhhcccccccccceeEEee
Confidence 4455555555555 35555554444444555544
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.12 E-value=1.5e-08 Score=82.77 Aligned_cols=57 Identities=28% Similarity=0.322 Sum_probs=35.6
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEE
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCI 62 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~ 62 (239)
.+|..|..|++.++ ...++|+.||++..++.|+..... -..-+.+++.+..++ ++.+
T Consensus 65 ~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~--ls~lp~~i~s~~~l~-~l~~ 121 (565)
T KOG0472|consen 65 KNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNK--LSELPEQIGSLISLV-KLDC 121 (565)
T ss_pred hcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccch--HhhccHHHhhhhhhh-hhhc
Confidence 35677788888888 578888888888888888653322 112334444444444 4443
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.05 E-value=4.8e-08 Score=79.90 Aligned_cols=54 Identities=31% Similarity=0.327 Sum_probs=35.1
Q ss_pred cCCcccEEeeccCccccccccC---CCCcccEEEecccc--ccccccCCCCcccEEEecccC
Q 037108 164 GLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCK 220 (239)
Q Consensus 164 ~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~ 220 (239)
.++++..|++++. +++ .+|. .+.+|++|++++.. .++..++++ .|+.|.+.+.|
T Consensus 250 ~L~~l~vLDLRdN-klk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 250 HLNSLLVLDLRDN-KLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccccceeeecccc-ccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 4667777777765 676 6664 45667777776533 455566666 77777777665
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.99 E-value=7.7e-07 Score=79.73 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=27.5
Q ss_pred CCCCcCCcccEEeeccCccccccccC----CCCcccEEEeccc
Q 037108 160 KSDEGLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKC 198 (239)
Q Consensus 160 ~~~~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c 198 (239)
+.+.+|++|+.|++++. ++. .+|. .++.|++|.+++.
T Consensus 377 p~l~~~~hLKVLhLsyN-rL~-~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYN-RLN-SFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred hhhccccceeeeeeccc-ccc-cCCHHHHhchHHhHHHhcccc
Confidence 34557999999999854 786 7875 5677777877763
No 17
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=4.4e-06 Score=47.25 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=27.3
Q ss_pred ccCcEEeCCCCCCCcccCccCCCCccCCccCce
Q 037108 5 IKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKF 37 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~ 37 (239)
++|++|++++| .++++|..+++|++|++|++.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~ 32 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLS 32 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEET
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEec
Confidence 57999999999 699999999999999999873
No 18
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2.4e-07 Score=73.16 Aligned_cols=138 Identities=20% Similarity=0.237 Sum_probs=79.1
Q ss_pred hcccccccceEEEEeccCCCChhHHHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCC
Q 037108 50 LKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGT 129 (239)
Q Consensus 50 L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 129 (239)
+.+=..|+ .+.++...+++... ....+.+++.|..|.++|+....+ ....+...+ -++|+.|.++||...
T Consensus 230 iAkN~~L~-~lnlsm~sG~t~n~--~~ll~~scs~L~~LNlsWc~l~~~-----~Vtv~V~hi--se~l~~LNlsG~rrn 299 (419)
T KOG2120|consen 230 IAKNSNLV-RLNLSMCSGFTENA--LQLLLSSCSRLDELNLSWCFLFTE-----KVTVAVAHI--SETLTQLNLSGYRRN 299 (419)
T ss_pred Hhccccce-eeccccccccchhH--HHHHHHhhhhHhhcCchHhhccch-----hhhHHHhhh--chhhhhhhhhhhHhh
Confidence 44444455 56665555543221 223356677888888888764321 111122222 247777788777432
Q ss_pred CccchhhhccCcceeeeeccCCCceeeCCCCCCCcCCcccEEeeccCccccccc-c--CCCCcccEEEecccccccc---
Q 037108 130 KFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTL-L--EYLPSLETLVIRKCEQLLV--- 203 (239)
Q Consensus 130 ~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~-p--~~l~~L~~L~l~~c~~l~~--- 203 (239)
-.-+.+.. -....|+|.+|++++|..++... . ..|+.|++|.++.|-.+..
T Consensus 300 l~~sh~~t-----------------------L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~ 356 (419)
T KOG2120|consen 300 LQKSHLST-----------------------LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL 356 (419)
T ss_pred hhhhHHHH-----------------------HHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHe
Confidence 21111100 11247788888888887766211 1 1588888888888886542
Q ss_pred -ccCCCCcccEEEecccC
Q 037108 204 -SILSLPTLRKLTVNGCK 220 (239)
Q Consensus 204 -~~~~l~~L~~L~i~~c~ 220 (239)
.+...|+|.+|++.+|-
T Consensus 357 ~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeccCcceEEEEecccc
Confidence 45677888888888874
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.93 E-value=9.8e-06 Score=69.74 Aligned_cols=202 Identities=17% Similarity=0.148 Sum_probs=93.9
Q ss_pred cEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcc-cccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108 8 HHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKS-LIHLQGTVCISRLENVKEISAAKEAQLNGKRNL 85 (239)
Q Consensus 8 r~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~-L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L 85 (239)
+.||+++| .+.++ +.++.+|.+|+.+++.... -+.|..++. ..|+. .|.+.... ........+..++.|
T Consensus 81 ~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~---Lt~IP~f~~~sghl~-~L~L~~N~----I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 81 QTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNE---LTRIPRFGHESGHLE-KLDLRHNL----ISSVTSEELSALPAL 151 (873)
T ss_pred eeeecccc-ccccCcHHHHhcCCcceeeeeccch---hhhccccccccccee-EEeeeccc----cccccHHHHHhHhhh
Confidence 56888888 46655 4667888888877653211 112222211 11222 33332111 222233456666778
Q ss_pred ccceeEEcCCCCCCCCCcchHHHh-hcCCCCCCcceEEEeccCCCCccc-hhhhccCccee--eeec--cCCCceeeCCC
Q 037108 86 KDLLLEWNNSTSNIREPETDTCVL-DLLKPHQSLKKLKINGYGGTKFAI-YTLSITGDSLF--SRYA--RMGKWIPHGSG 159 (239)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~p~-~~l~l~~~~~~--L~l~--~~~~l~~~~~~ 159 (239)
+.|+++.+.... +. .+.....++++|.+.++....+-. .+..+. .+ +++. .+..+. +
T Consensus 152 rslDLSrN~is~----------i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln---sL~tlkLsrNrittLp----~ 214 (873)
T KOG4194|consen 152 RSLDLSRNLISE----------IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN---SLLTLKLSRNRITTLP----Q 214 (873)
T ss_pred hhhhhhhchhhc----------ccCCCCCCCCCceEEeeccccccccccccccccc---hheeeecccCcccccC----H
Confidence 888887443111 11 111223588888888775433221 000000 00 1110 111111 1
Q ss_pred CCCCcCCcccEEeeccCccccccc----cCCCCcccEEEeccc--ccccc-ccCCCCcccEEEecccCccccccccccCc
Q 037108 160 KSDEGLADLRELFLVSCSKLQRTL----LEYLPSLETLVIRKC--EQLLV-SILSLPTLRKLTVNGCKEVVGRAINLSSS 232 (239)
Q Consensus 160 ~~~~~~~~L~~L~l~~~~~L~~~~----p~~l~~L~~L~l~~c--~~l~~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~l 232 (239)
..+..+|+|+.|++... +++ .+ -..+|+|+.|++... ..+.. .+..+.++++|++.-..--..-.+.+=.|
T Consensus 215 r~Fk~L~~L~~LdLnrN-~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 215 RSFKRLPKLESLDLNRN-RIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred HHhhhcchhhhhhcccc-cee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence 23345667777777543 332 11 125667777666532 23433 34556677777766543333334444444
Q ss_pred cceEe
Q 037108 233 SSVVL 237 (239)
Q Consensus 233 ~~L~~ 237 (239)
++|+.
T Consensus 293 t~L~~ 297 (873)
T KOG4194|consen 293 TSLEQ 297 (873)
T ss_pred chhhh
Confidence 44443
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.92 E-value=8.4e-07 Score=79.51 Aligned_cols=114 Identities=23% Similarity=0.204 Sum_probs=70.3
Q ss_pred HHHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeee-eccCC
Q 037108 73 AAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSR-YARMG 151 (239)
Q Consensus 73 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~-l~~~~ 151 (239)
+.....+.++.+|+.|+++++..... -...+..+..|+.|.++|+.-.++|..+....- |+ +.-..
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~f---------pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~----L~tL~ahs 439 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSF---------PASKLRKLEELEELNLSGNKLTTLPDTVANLGR----LHTLRAHS 439 (1081)
T ss_pred ccchhhhccccceeeeeecccccccC---------CHHHHhchHHhHHHhcccchhhhhhHHHHhhhh----hHHHhhcC
Confidence 34445677889999999998753210 012345567899999999988788865422110 00 00111
Q ss_pred CceeeCCCCCCCcCCcccEEeeccCcccc-ccccCCC--CcccEEEeccccccc
Q 037108 152 KWIPHGSGKSDEGLADLRELFLVSCSKLQ-RTLLEYL--PSLETLVIRKCEQLL 202 (239)
Q Consensus 152 ~l~~~~~~~~~~~~~~L~~L~l~~~~~L~-~~~p~~l--~~L~~L~l~~c~~l~ 202 (239)
|.-.. .+.+..++.|+.++++ |++|. +.+|... |+|++|++++...+.
T Consensus 440 N~l~~--fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 440 NQLLS--FPELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred Cceee--chhhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcccc
Confidence 11111 2366778999999998 66776 2334422 799999999887653
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.91 E-value=2.7e-05 Score=70.65 Aligned_cols=181 Identities=18% Similarity=0.167 Sum_probs=93.1
Q ss_pred cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108 6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL 85 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L 85 (239)
+|+.|++++| .++.+|..+. .+|++|++....-.. ....+. ..|+ .|.+.+.. +... +..+ .++|
T Consensus 200 ~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~Lts--LP~~l~--~~L~-~L~Ls~N~-L~~L----P~~l--~s~L 264 (754)
T PRK15370 200 QITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTS--IPATLP--DTIQ-EMELSINR-ITEL----PERL--PSAL 264 (754)
T ss_pred CCcEEEecCC-CCCcCChhhc--cCCCEEECCCCcccc--CChhhh--cccc-EEECcCCc-cCcC----ChhH--hCCC
Confidence 5677777777 4677776554 467777654322110 001111 1233 44443221 1111 1111 1357
Q ss_pred ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhh-hccCcceeeeeccCCCceeeCCCCCCCc
Q 037108 86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTL-SITGDSLFSRYARMGKWIPHGSGKSDEG 164 (239)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l-~l~~~~~~L~l~~~~~l~~~~~~~~~~~ 164 (239)
+.|+++.+... .++..+ +.+|+.|+++++....+|..+. .+. .|.+.+. .+..+ | ...
T Consensus 265 ~~L~Ls~N~L~----------~LP~~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~----~L~Ls~N-~Lt~L--P--~~l 323 (754)
T PRK15370 265 QSLDLFHNKIS----------CLPENL--PEELRYLSVYDNSIRTLPAHLPSGIT----HLNVQSN-SLTAL--P--ETL 323 (754)
T ss_pred CEEECcCCccC----------cccccc--CCCCcEEECCCCccccCcccchhhHH----HHHhcCC-ccccC--C--ccc
Confidence 77777644321 122222 2478888888876655554321 000 1222111 11111 1 123
Q ss_pred CCcccEEeeccCccccccccC-CCCcccEEEeccccc--cccccCCCCcccEEEecccCccccccc
Q 037108 165 LADLRELFLVSCSKLQRTLLE-YLPSLETLVIRKCEQ--LLVSILSLPTLRKLTVNGCKEVVGRAI 227 (239)
Q Consensus 165 ~~~L~~L~l~~~~~L~~~~p~-~l~~L~~L~l~~c~~--l~~~~~~l~~L~~L~i~~c~~l~~~~~ 227 (239)
+++|+.|++.+| .++ .+|. ..++|+.|+++++.- ++..+ .++|++|++++|. +...|.
T Consensus 324 ~~sL~~L~Ls~N-~Lt-~LP~~l~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~-Lt~LP~ 384 (754)
T PRK15370 324 PPGLKTLEAGEN-ALT-SLPASLPPELQVLDVSKNQITVLPETL--PPTITTLDVSRNA-LTNLPE 384 (754)
T ss_pred cccceeccccCC-ccc-cCChhhcCcccEEECCCCCCCcCChhh--cCCcCEEECCCCc-CCCCCH
Confidence 578999999987 576 6775 346999999988752 22222 3689999999974 444443
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.85 E-value=9.1e-06 Score=73.69 Aligned_cols=183 Identities=14% Similarity=0.097 Sum_probs=98.2
Q ss_pred ccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccc
Q 037108 5 IKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRN 84 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~ 84 (239)
.+|++|++++| .++.+|..+. .+|+.|++..+... .....+. +.|+ .|.+... .+. ..+..+. ++
T Consensus 220 ~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~--~LP~~l~--s~L~-~L~Ls~N-~L~----~LP~~l~--~s 284 (754)
T PRK15370 220 GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRIT--ELPERLP--SALQ-SLDLFHN-KIS----CLPENLP--EE 284 (754)
T ss_pred cCCCEEECCCC-ccccCChhhh--ccccEEECcCCccC--cCChhHh--CCCC-EEECcCC-ccC----ccccccC--CC
Confidence 47999999999 5889998764 46888876543221 1111121 2455 5555422 111 1122222 36
Q ss_pred cccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhh-hccCcceeeeeccCCCceeeCCCCCCC
Q 037108 85 LKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTL-SITGDSLFSRYARMGKWIPHGSGKSDE 163 (239)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l-~l~~~~~~L~l~~~~~l~~~~~~~~~~ 163 (239)
|+.|.++.+.... ++..+ +.+|+.|++.++....+|..+. .+. .|.+.++ .+..+ |. .
T Consensus 285 L~~L~Ls~N~Lt~----------LP~~l--p~sL~~L~Ls~N~Lt~LP~~l~~sL~----~L~Ls~N-~Lt~L--P~--~ 343 (754)
T PRK15370 285 LRYLSVYDNSIRT----------LPAHL--PSGITHLNVQSNSLTALPETLPPGLK----TLEAGEN-ALTSL--PA--S 343 (754)
T ss_pred CcEEECCCCcccc----------Ccccc--hhhHHHHHhcCCccccCCccccccce----eccccCC-ccccC--Ch--h
Confidence 8888887553211 11111 2356667777665544443220 000 1222221 11111 11 1
Q ss_pred cCCcccEEeeccCccccccccC-CCCcccEEEeccccccccccCCC-CcccEEEecccCccccccc
Q 037108 164 GLADLRELFLVSCSKLQRTLLE-YLPSLETLVIRKCEQLLVSILSL-PTLRKLTVNGCKEVVGRAI 227 (239)
Q Consensus 164 ~~~~L~~L~l~~~~~L~~~~p~-~l~~L~~L~l~~c~~l~~~~~~l-~~L~~L~i~~c~~l~~~~~ 227 (239)
..++|+.|++++| +++ .+|. ..++|+.|++++|. +......+ ++|+.|++++| ++..+|.
T Consensus 344 l~~sL~~L~Ls~N-~L~-~LP~~lp~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N-~L~~LP~ 405 (754)
T PRK15370 344 LPPELQVLDVSKN-QIT-VLPETLPPTITTLDVSRNA-LTNLPENLPAALQIMQASRN-NLVRLPE 405 (754)
T ss_pred hcCcccEEECCCC-CCC-cCChhhcCCcCEEECCCCc-CCCCCHhHHHHHHHHhhccC-CcccCch
Confidence 2479999999987 676 6765 34699999999875 32222222 36889998885 4444444
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.80 E-value=0.00013 Score=66.30 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=18.9
Q ss_pred CcEEeCCCCCCCcccCccCCCCccCCccCce
Q 037108 7 LHHLNNPSTDSLEEMPQGIGKLTSLRTMCKF 37 (239)
Q Consensus 7 Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~ 37 (239)
-..|+++++ .++.+|+.+.. +|+.|++.
T Consensus 203 ~~~LdLs~~-~LtsLP~~l~~--~L~~L~L~ 230 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCLPA--HITTLVIP 230 (788)
T ss_pred CcEEEcCCC-CCCcCCcchhc--CCCEEEcc
Confidence 456788887 57788877753 66666543
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.80 E-value=0.00011 Score=66.74 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=20.4
Q ss_pred cCcEEeCCCCCCCcccCccCCCCccCCccCceE
Q 037108 6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFV 38 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~ 38 (239)
+|+.|++.+| .++.+|.. +.+|++|++..
T Consensus 223 ~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~ 251 (788)
T PRK15387 223 HITTLVIPDN-NLTSLPAL---PPELRTLEVSG 251 (788)
T ss_pred CCCEEEccCC-cCCCCCCC---CCCCcEEEecC
Confidence 5788888887 57888853 46777776643
No 25
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.76 E-value=7.7e-05 Score=45.37 Aligned_cols=53 Identities=30% Similarity=0.404 Sum_probs=40.6
Q ss_pred CcccEEeeccCccccccccC----CCCcccEEEecccc--ccc-cccCCCCcccEEEecccC
Q 037108 166 ADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE--QLL-VSILSLPTLRKLTVNGCK 220 (239)
Q Consensus 166 ~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~--~l~-~~~~~l~~L~~L~i~~c~ 220 (239)
|+|++|++++| +++ .+|. .+++|++|+++++. .++ ..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 67899999987 776 6663 57899999998655 232 256788999999998874
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.58 E-value=5.3e-05 Score=56.46 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=4.8
Q ss_pred CCCcccEEEecccc
Q 037108 186 YLPSLETLVIRKCE 199 (239)
Q Consensus 186 ~l~~L~~L~l~~c~ 199 (239)
.+|+|+.|.+.+.|
T Consensus 111 ~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 111 SLPKLRVLSLEGNP 124 (175)
T ss_dssp G-TT--EEE-TT-G
T ss_pred cCCCcceeeccCCc
Confidence 35555555555544
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.57 E-value=7.6e-06 Score=60.94 Aligned_cols=112 Identities=23% Similarity=0.241 Sum_probs=32.2
Q ss_pred CcccCcEEeCCCCCCCcccCccCC-CCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIG-KLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~-~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
+..++|.|+++++ .+..+. .++ .+.+|++|++.... -..+..+..+++|+ .|.+.+.. +.+..... ...
T Consensus 17 n~~~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~---I~~l~~l~~L~~L~-~L~L~~N~-I~~i~~~l---~~~ 86 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQ---ITKLEGLPGLPRLK-TLDLSNNR-ISSISEGL---DKN 86 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS-----S--TT----TT---EEE--SS----S-CHHH---HHH
T ss_pred ccccccccccccc-cccccc-chhhhhcCCCEEECCCCC---CccccCccChhhhh-hcccCCCC-CCccccch---HHh
Confidence 4557899999999 577774 576 58889988763322 22344455556566 66654322 11121111 124
Q ss_pred ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc
Q 037108 82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA 132 (239)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p 132 (239)
+++|+.|+++.+.... ..-+..+..+++|+.|++.+++....+
T Consensus 87 lp~L~~L~L~~N~I~~--------l~~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 87 LPNLQELYLSNNKISD--------LNELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp -TT--EEE-TTS---S--------CCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred CCcCCEEECcCCcCCC--------hHHhHHHHcCCCcceeeccCCcccchh
Confidence 6789999987543211 111345556789999999988654433
No 28
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=6.8e-05 Score=67.53 Aligned_cols=86 Identities=22% Similarity=0.165 Sum_probs=62.3
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHH---hcc
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKE---AQL 79 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~---~~l 79 (239)
++++|+.||++++ +++.+ .+|++|++||+|.+..........+.+|=+|++|+ .|+++.-...... .... +.-
T Consensus 171 sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~-vLDIS~~~~~~~~-~ii~qYlec~ 246 (699)
T KOG3665|consen 171 SFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR-VLDISRDKNNDDT-KIIEQYLECG 246 (699)
T ss_pred ccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC-eeeccccccccch-HHHHHHHHhc
Confidence 6889999999999 58888 78999999999987766666667788888888888 8888754433222 1111 222
Q ss_pred CcccccccceeEE
Q 037108 80 NGKRNLKDLLLEW 92 (239)
Q Consensus 80 ~~l~~L~~L~l~~ 92 (239)
..+++|+.|+.+.
T Consensus 247 ~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 247 MVLPELRFLDCSG 259 (699)
T ss_pred ccCccccEEecCC
Confidence 3377888888773
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.37 E-value=0.00038 Score=42.24 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=29.9
Q ss_pred CCCCcCCcccEEeeccCccccccccC----CCCcccEEEecccc
Q 037108 160 KSDEGLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE 199 (239)
Q Consensus 160 ~~~~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~ 199 (239)
..+..+++|++|+++++ +++ .++. .+++|++|++++++
T Consensus 19 ~~f~~l~~L~~L~l~~N-~l~-~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 19 DSFSNLPNLETLDLSNN-NLT-SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTTTGTTESEEEETSS-SES-EEETTTTTTSTTESEEEETSSS
T ss_pred HHHcCCCCCCEeEccCC-ccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence 44577999999999965 676 5553 68999999998864
No 30
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.34 E-value=6.7e-05 Score=35.56 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=18.8
Q ss_pred cCcEEeCCCCCCCcccCccCCCC
Q 037108 6 KLHHLNNPSTDSLEEMPQGIGKL 28 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~i~~L 28 (239)
+||+||+++| .++++|+++++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 6899999999 689999988765
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.25 E-value=2e-05 Score=64.70 Aligned_cols=74 Identities=18% Similarity=0.124 Sum_probs=45.7
Q ss_pred CCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--cccc-ccCCCCcccEEEecccCccccccccccCccce
Q 037108 162 DEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLV-SILSLPTLRKLTVNGCKEVVGRAINLSSSSSV 235 (239)
Q Consensus 162 ~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L 235 (239)
+..+|+|+.|++++. ++++.-+. ....+++|.+.... .+.+ .+.++..|+.|++++..--..-++.+..+.+|
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 456889999999865 67622222 35667777775533 2222 45677888888888865555555555554444
Q ss_pred E
Q 037108 236 V 236 (239)
Q Consensus 236 ~ 236 (239)
.
T Consensus 349 ~ 349 (498)
T KOG4237|consen 349 S 349 (498)
T ss_pred e
Confidence 3
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00012 Score=61.04 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=24.6
Q ss_pred CCcccCcEEeCCCCCCCcccCc--cCCCCccCCccCceE
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQ--GIGKLTSLRTMCKFV 38 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~--~i~~L~~L~~L~~~~ 38 (239)
+++++||...++++ .+...|. -+..+.+++.||++.
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~ 155 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSR 155 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchh
Confidence 36778888888888 4665553 456677777777643
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.20 E-value=0.00017 Score=58.34 Aligned_cols=187 Identities=24% Similarity=0.221 Sum_probs=103.0
Q ss_pred cCcEEeCCCCCCCcccCc----cCCCCccCCccCceEeccC--CCCChhh----------hcccccccceEEEEeccCCC
Q 037108 6 KLHHLNNPSTDSLEEMPQ----GIGKLTSLRTMCKFVVGNE--IGSGLRQ----------LKSLIHLQGTVCISRLENVK 69 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~----~i~~L~~L~~L~~~~~~~~--~~~~i~~----------L~~L~~L~~~L~~~~~~~~~ 69 (239)
+|++|+||+|-.-..-++ =|...++|++|.+..+... .+..+.. .+.=+.|| .+.+....--.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr-v~i~~rNrlen 171 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR-VFICGRNRLEN 171 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE-EEEeecccccc
Confidence 789999999853222222 2556788888877554421 1111111 12222233 33332211111
Q ss_pred ChhHHHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeecc
Q 037108 70 EISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYAR 149 (239)
Q Consensus 70 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~ 149 (239)
.........++..+.|+.+.+..+.. .......+.+.+...++|+.|++..+....--+-. +
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I-----~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~-----------L-- 233 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGI-----RPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA-----------L-- 233 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccc-----cCchhHHHHHHHHhCCcceeeecccchhhhHHHHH-----------H--
Confidence 12223334455556788888775532 12223345666777788888888765322111000 0
Q ss_pred CCCceeeCCCCCCCcCCcccEEeeccCcccc--cc------ccCCCCcccEEEeccccc-------cccccCCCCcccEE
Q 037108 150 MGKWIPHGSGKSDEGLADLRELFLVSCSKLQ--RT------LLEYLPSLETLVIRKCEQ-------LLVSILSLPTLRKL 214 (239)
Q Consensus 150 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~--~~------~p~~l~~L~~L~l~~c~~-------l~~~~~~l~~L~~L 214 (239)
......+++|+.+.+++| .++ |. +...+|+|+.|.+.++.- +...+...|.|+.|
T Consensus 234 ---------akaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kL 303 (382)
T KOG1909|consen 234 ---------AKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKL 303 (382)
T ss_pred ---------HHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHh
Confidence 012234778999999999 444 22 234689999999988762 11234568899999
Q ss_pred EecccCc
Q 037108 215 TVNGCKE 221 (239)
Q Consensus 215 ~i~~c~~ 221 (239)
.+++|..
T Consensus 304 nLngN~l 310 (382)
T KOG1909|consen 304 NLNGNRL 310 (382)
T ss_pred cCCcccc
Confidence 9998764
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.20 E-value=0.0012 Score=55.59 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=8.9
Q ss_pred CCCcceEEEeccCC
Q 037108 115 HQSLKKLKINGYGG 128 (239)
Q Consensus 115 ~~~L~~L~l~~~~~ 128 (239)
+.+|+.|.+.+|..
T Consensus 71 P~sLtsL~Lsnc~n 84 (426)
T PRK15386 71 PNELTEITIENCNN 84 (426)
T ss_pred CCCCcEEEccCCCC
Confidence 34677777776543
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00016 Score=60.26 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=18.7
Q ss_pred CCcCCcccEEeeccCccccccc--c--------CCCCcccEEEecccc
Q 037108 162 DEGLADLRELFLVSCSKLQRTL--L--------EYLPSLETLVIRKCE 199 (239)
Q Consensus 162 ~~~~~~L~~L~l~~~~~L~~~~--p--------~~l~~L~~L~l~~c~ 199 (239)
.+.||.|+.|.+++| .+. ++ | ..||+|++|.+...+
T Consensus 267 ~~~l~~L~~Lnls~t-gi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSST-GIA-SIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccccchhhhhcccc-Ccc-hhcCCCccchhhhcccccceeeecccCc
Confidence 345666666666554 222 11 1 146777777665544
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=5e-05 Score=60.38 Aligned_cols=128 Identities=17% Similarity=0.179 Sum_probs=77.1
Q ss_pred ccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCcee--
Q 037108 78 QLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIP-- 155 (239)
Q Consensus 78 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~-- 155 (239)
.+..+++|+.|++..... ...+...++.-.+|+.++++++.|..--..- +-+..|..+..
T Consensus 205 iLs~C~kLk~lSlEg~~L---------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~---------ll~~scs~L~~LN 266 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRL---------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQ---------LLLSSCSRLDELN 266 (419)
T ss_pred HHHHHHhhhhcccccccc---------CcHHHHHHhccccceeeccccccccchhHHH---------HHHHhhhhHhhcC
Confidence 345566777777663322 2334555566678888888877664421100 11222222221
Q ss_pred --eCCC--C-----CCCcCCcccEEeeccCccccc-----cccCCCCcccEEEecccccccc----ccCCCCcccEEEec
Q 037108 156 --HGSG--K-----SDEGLADLRELFLVSCSKLQR-----TLLEYLPSLETLVIRKCEQLLV----SILSLPTLRKLTVN 217 (239)
Q Consensus 156 --~~~~--~-----~~~~~~~L~~L~l~~~~~L~~-----~~p~~l~~L~~L~l~~c~~l~~----~~~~l~~L~~L~i~ 217 (239)
|+.. + -..--++|+.|++++|.+--+ .+....|+|..|++++|-.+.. .+-.|+.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 2210 0 011246888999998864221 2234689999999999987754 56689999999999
Q ss_pred ccCccc
Q 037108 218 GCKEVV 223 (239)
Q Consensus 218 ~c~~l~ 223 (239)
.|-.+.
T Consensus 347 RCY~i~ 352 (419)
T KOG2120|consen 347 RCYDII 352 (419)
T ss_pred hhcCCC
Confidence 997665
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.72 E-value=0.0017 Score=54.72 Aligned_cols=61 Identities=23% Similarity=0.453 Sum_probs=38.5
Q ss_pred CcccEEeeccCccccccccCCC-CcccEEEeccccccccccCCCCcccEEEecc--cCcccccccccc
Q 037108 166 ADLRELFLVSCSKLQRTLLEYL-PSLETLVIRKCEQLLVSILSLPTLRKLTVNG--CKEVVGRAINLS 230 (239)
Q Consensus 166 ~~L~~L~l~~~~~L~~~~p~~l-~~L~~L~l~~c~~l~~~~~~l~~L~~L~i~~--c~~l~~~~~~~~ 230 (239)
++|++|.+++|.+++ .+|..+ ++|++|.+.+|..++. ++ ++|+.|.+.. |..+..+|..+.
T Consensus 72 ~sLtsL~Lsnc~nLt-sLP~~LP~nLe~L~Ls~Cs~L~s-LP--~sLe~L~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 72 NELTEITIENCNNLT-TLPGSIPEGLEKLTVCHCPEISG-LP--ESVRSLEIKGSATDSIKNVPNGLT 135 (426)
T ss_pred CCCcEEEccCCCCcc-cCCchhhhhhhheEccCcccccc-cc--cccceEEeCCCCCcccccCcchHh
Confidence 368888888888886 777533 4788888888876632 22 3566666653 333444444433
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.45 E-value=0.0036 Score=53.00 Aligned_cols=59 Identities=31% Similarity=0.331 Sum_probs=36.3
Q ss_pred CCcCCcccEEeeccCccccc--cccCCCCcccEEEeccccc--cccccCCCCcccEEEecccCcc
Q 037108 162 DEGLADLRELFLVSCSKLQR--TLLEYLPSLETLVIRKCEQ--LLVSILSLPTLRKLTVNGCKEV 222 (239)
Q Consensus 162 ~~~~~~L~~L~l~~~~~L~~--~~p~~l~~L~~L~l~~c~~--l~~~~~~l~~L~~L~i~~c~~l 222 (239)
...+.++..+.+.+. +++. .....++++++|++.++.- +. .++.+.+++.+++++..-.
T Consensus 228 ~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n~i~~i~-~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 228 LSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQISSIS-SLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hhhcccccccccCCc-eeeeccchhccccccceeccccccccccc-cccccCccCEEeccCcccc
Confidence 345666666665533 4431 1223577788998877552 32 3677888999998875443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=96.27 E-value=0.0037 Score=56.22 Aligned_cols=82 Identities=20% Similarity=0.138 Sum_probs=51.5
Q ss_pred CcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccc
Q 037108 7 LHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLK 86 (239)
Q Consensus 7 Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 86 (239)
++.|+|+++..-+.+|..|++|++|++|++..... .+.....++++++|+ .|++.... .....+..+.++++|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l-~g~iP~~~~~l~~L~-~LdLs~N~----lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSI-RGNIPPSLGSITSLE-VLDLSYNS----FNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcc-cCcCChHHhCCCCCC-EEECCCCC----CCCCCchHHhcCCCCC
Confidence 67788888865557888888888888887754322 223334566677666 66654332 2223344566677788
Q ss_pred cceeEEcC
Q 037108 87 DLLLEWNN 94 (239)
Q Consensus 87 ~L~l~~~~ 94 (239)
.|+++.+.
T Consensus 494 ~L~Ls~N~ 501 (623)
T PLN03150 494 ILNLNGNS 501 (623)
T ss_pred EEECcCCc
Confidence 87777554
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.20 E-value=0.0082 Score=33.74 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=7.2
Q ss_pred cCCCCcccEEEeccc
Q 037108 205 ILSLPTLRKLTVNGC 219 (239)
Q Consensus 205 ~~~l~~L~~L~i~~c 219 (239)
+..+++|++|+++++
T Consensus 20 l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 20 LSNLPNLETLNLSNN 34 (44)
T ss_dssp GTTCTTSSEEEETSS
T ss_pred HhCCCCCCEEEecCC
Confidence 444444444444444
No 41
>PLN03150 hypothetical protein; Provisional
Probab=96.19 E-value=0.004 Score=56.03 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=48.6
Q ss_pred CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEec
Q 037108 1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRL 65 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~ 65 (239)
|++|.+|++|++++|...+.+|..++++++|++|++..... .+.....++++++|+ .|.+...
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~l-sg~iP~~l~~L~~L~-~L~Ls~N 500 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF-NGSIPESLGQLTSLR-ILNLNGN 500 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCC-CCCCchHHhcCCCCC-EEECcCC
Confidence 35789999999999965568999999999999998865432 334456688888888 7877543
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.99 E-value=0.0011 Score=53.09 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=64.3
Q ss_pred cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108 6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL 85 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L 85 (239)
-|..+|+++| .++++-+++.-+..++.|++.. ..+..+++|.+|. .|...++.+.. ..... ..=.++-|+
T Consensus 285 ~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~------N~i~~v~nLa~L~-~L~~LDLS~N~-Ls~~~-Gwh~KLGNI 354 (490)
T KOG1259|consen 285 ELTELDLSGN-LITQIDESVKLAPKLRRLILSQ------NRIRTVQNLAELP-QLQLLDLSGNL-LAECV-GWHLKLGNI 354 (490)
T ss_pred hhhhcccccc-chhhhhhhhhhccceeEEeccc------cceeeehhhhhcc-cceEeecccch-hHhhh-hhHhhhcCE
Confidence 4677888888 4777777777777777776532 2233333333333 23222222211 11000 000123355
Q ss_pred ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcC
Q 037108 86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGL 165 (239)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~ 165 (239)
++|.+..+ ..+.+..++.+-.|..|++.+++..+. ..+ ..+|.+
T Consensus 355 KtL~La~N-----------~iE~LSGL~KLYSLvnLDl~~N~Ie~l----------------------deV---~~IG~L 398 (490)
T KOG1259|consen 355 KTLKLAQN-----------KIETLSGLRKLYSLVNLDLSSNQIEEL----------------------DEV---NHIGNL 398 (490)
T ss_pred eeeehhhh-----------hHhhhhhhHhhhhheeccccccchhhH----------------------HHh---cccccc
Confidence 66655522 122234444455666666666543221 111 356789
Q ss_pred CcccEEeeccCc
Q 037108 166 ADLRELFLVSCS 177 (239)
Q Consensus 166 ~~L~~L~l~~~~ 177 (239)
|+|+.+.+.+.|
T Consensus 399 PCLE~l~L~~NP 410 (490)
T KOG1259|consen 399 PCLETLRLTGNP 410 (490)
T ss_pred cHHHHHhhcCCC
Confidence 999998888765
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.78 E-value=0.0061 Score=51.60 Aligned_cols=169 Identities=18% Similarity=0.160 Sum_probs=88.9
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCc-cCCccCceEeccCCCCCh-hhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLT-SLRTMCKFVVGNEIGSGL-RQLKSLIHLQGTVCISRLENVKEISAAKEAQLN 80 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~-~L~~L~~~~~~~~~~~~i-~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~ 80 (239)
.+..++.|++.++ .+.++|+.++.+. +|+.|++..... ..+ ..++.+++|+ .|.+....- . ..+....
T Consensus 114 ~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i---~~l~~~~~~l~~L~-~L~l~~N~l----~-~l~~~~~ 183 (394)
T COG4886 114 ELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKI---ESLPSPLRNLPNLK-NLDLSFNDL----S-DLPKLLS 183 (394)
T ss_pred cccceeEEecCCc-ccccCccccccchhhcccccccccch---hhhhhhhhcccccc-ccccCCchh----h-hhhhhhh
Confidence 3467889999988 5899999898886 999998743322 122 3456666666 565543221 1 1122222
Q ss_pred cccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCC
Q 037108 81 GKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGK 160 (239)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~ 160 (239)
..++|+.|+++.+.. ..+......+..|+.+.+.++.....+..+..... +....+.+......+.
T Consensus 184 ~~~~L~~L~ls~N~i----------~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~----l~~l~l~~n~~~~~~~ 249 (394)
T COG4886 184 NLSNLNNLDLSGNKI----------SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKN----LSGLELSNNKLEDLPE 249 (394)
T ss_pred hhhhhhheeccCCcc----------ccCchhhhhhhhhhhhhhcCCcceecchhhhhccc----ccccccCCceeeeccc
Confidence 556788888774432 11121112233566777766643333322111000 0000111111111124
Q ss_pred CCCcCCcccEEeeccCccccccccC--CCCcccEEEecc
Q 037108 161 SDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRK 197 (239)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~ 197 (239)
..+.+++++.|++.++ .+. .++. .+.+++.|++.+
T Consensus 250 ~~~~l~~l~~L~~s~n-~i~-~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 250 SIGNLSNLETLDLSNN-QIS-SISSLGSLTNLRELDLSG 286 (394)
T ss_pred hhccccccceeccccc-ccc-ccccccccCccCEEeccC
Confidence 4566777888888755 554 5543 456777777765
No 44
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.66 E-value=0.0058 Score=26.78 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=11.6
Q ss_pred ccCcEEeCCCCCCCcccC
Q 037108 5 IKLHHLNNPSTDSLEEMP 22 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP 22 (239)
++|+.|++++|. ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 479999999995 88887
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.65 E-value=0.0013 Score=54.74 Aligned_cols=87 Identities=16% Similarity=0.178 Sum_probs=45.9
Q ss_pred cCcEEeCCCCCCCcccC--ccCCCCccCCccCceEeccCCCCChhhhc-ccccccceEEEEeccCCCChhHHH-HhccCc
Q 037108 6 KLHHLNNPSTDSLEEMP--QGIGKLTSLRTMCKFVVGNEIGSGLRQLK-SLIHLQGTVCISRLENVKEISAAK-EAQLNG 81 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP--~~i~~L~~L~~L~~~~~~~~~~~~i~~L~-~L~~L~~~L~~~~~~~~~~~~~~~-~~~l~~ 81 (239)
.||.|.++||..++.=| .--.+-.+.++|.++++..........+. ..+.++ .+....+.+ ..+.. ......
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~-~l~L~~c~~---iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLR-HLNLHSCSS---ITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhh-hhhhcccch---hHHHHHHHHHHh
Confidence 47788888885443322 22345566777777666544333333332 233333 333333222 22222 223446
Q ss_pred ccccccceeEEcCCC
Q 037108 82 KRNLKDLLLEWNNST 96 (239)
Q Consensus 82 l~~L~~L~l~~~~~~ 96 (239)
+++|+++.++|+...
T Consensus 215 C~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQI 229 (483)
T ss_pred hhhHHHhhhccCchh
Confidence 788999999998643
No 46
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.62 E-value=0.0015 Score=53.99 Aligned_cols=51 Identities=16% Similarity=0.119 Sum_probs=32.6
Q ss_pred CCCcccEEEecccc--cccc-ccCCCCcccEEEecccCccccccccccCccceE
Q 037108 186 YLPSLETLVIRKCE--QLLV-SILSLPTLRKLTVNGCKEVVGRAINLSSSSSVV 236 (239)
Q Consensus 186 ~l~~L~~L~l~~c~--~l~~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~ 236 (239)
.+|+|+.|++++.. .++. ++.....+++|.+.+..--....+.+..+..|+
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~ 325 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLK 325 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccce
Confidence 57888889887755 2322 677888999999887543333344444444443
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.59 E-value=0.0071 Score=54.83 Aligned_cols=91 Identities=18% Similarity=0.146 Sum_probs=45.5
Q ss_pred CCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccccceeEEcCCCCCCCCCcchH
Q 037108 27 KLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDT 106 (239)
Q Consensus 27 ~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 106 (239)
++.||..||+.+++- ..+..+++|++|+ .|.+.+++-.. ......+..+++|+.|+++....... .....
T Consensus 171 sFpNL~sLDIS~TnI---~nl~GIS~LknLq-~L~mrnLe~e~---~~~l~~LF~L~~L~vLDIS~~~~~~~---~~ii~ 240 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNI---SNLSGISRLKNLQ-VLSMRNLEFES---YQDLIDLFNLKKLRVLDISRDKNNDD---TKIIE 240 (699)
T ss_pred ccCccceeecCCCCc---cCcHHHhccccHH-HHhccCCCCCc---hhhHHHHhcccCCCeeeccccccccc---hHHHH
Confidence 455555555543322 2223444455555 55554444211 11123455677788888875443211 11233
Q ss_pred HHhhcCCCCCCcceEEEeccC
Q 037108 107 CVLDLLKPHQSLKKLKINGYG 127 (239)
Q Consensus 107 ~~~~~l~~~~~L~~L~l~~~~ 127 (239)
..++.-..+|+|+.|+.++..
T Consensus 241 qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 241 QYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHHHhcccCccccEEecCCcc
Confidence 444555556788888887654
No 48
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.0025 Score=48.02 Aligned_cols=59 Identities=27% Similarity=0.451 Sum_probs=35.5
Q ss_pred cCCcccEEeeccCccccc----cccCCCCcccEEEecccccccc----ccCCCCcccEEEecccCcc
Q 037108 164 GLADLRELFLVSCSKLQR----TLLEYLPSLETLVIRKCEQLLV----SILSLPTLRKLTVNGCKEV 222 (239)
Q Consensus 164 ~~~~L~~L~l~~~~~L~~----~~p~~l~~L~~L~l~~c~~l~~----~~~~l~~L~~L~i~~c~~l 222 (239)
.+++++.|.+.+|..+.. -+....|+|+.|+|++|+.+++ .+..+++|+.|.+.+.+..
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 355666666666655431 2222467777777777777654 3456677777777666543
No 49
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.90 E-value=0.019 Score=28.03 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.7
Q ss_pred cccCcEEeCCCCCCCcccCccCC
Q 037108 4 LIKLHHLNNPSTDSLEEMPQGIG 26 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~lP~~i~ 26 (239)
|++|++|++++| .++.+|.++.
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 578999999999 6999998653
No 50
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.90 E-value=0.019 Score=28.03 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.7
Q ss_pred cccCcEEeCCCCCCCcccCccCC
Q 037108 4 LIKLHHLNNPSTDSLEEMPQGIG 26 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~lP~~i~ 26 (239)
|++|++|++++| .++.+|.++.
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 578999999999 6999998653
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=93.72 E-value=0.014 Score=50.70 Aligned_cols=105 Identities=19% Similarity=0.134 Sum_probs=49.4
Q ss_pred cEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccccc
Q 037108 8 HHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKD 87 (239)
Q Consensus 8 r~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~ 87 (239)
+.|-++++ +++.+|++||-+..|..||...+. ......+++.|+.|+ .+.+.. ......+.++..+ .|..
T Consensus 146 kvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ne--i~slpsql~~l~slr-~l~vrR-----n~l~~lp~El~~L-pLi~ 215 (722)
T KOG0532|consen 146 KVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNE--IQSLPSQLGYLTSLR-DLNVRR-----NHLEDLPEELCSL-PLIR 215 (722)
T ss_pred eeEEEecC-ccccCCcccccchhHHHhhhhhhh--hhhchHHhhhHHHHH-HHHHhh-----hhhhhCCHHHhCC-ceee
Confidence 33444444 467777777766666666543322 123344555555555 332211 1111222333333 2555
Q ss_pred ceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc
Q 037108 88 LLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA 132 (239)
Q Consensus 88 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p 132 (239)
|+++.++. ..++..+..+.+|+.|.+.++.....|
T Consensus 216 lDfScNki----------s~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 216 LDFSCNKI----------SYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred eecccCce----------eecchhhhhhhhheeeeeccCCCCCCh
Confidence 55553321 123444555666777777666543333
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=93.69 E-value=0.012 Score=51.07 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=17.0
Q ss_pred cCcEEeCCCCCCCcccCccCCCCccCCccCc
Q 037108 6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCK 36 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~ 36 (239)
.|..+.+..+ .+..+|..|++|..|.+|++
T Consensus 99 ~Le~liLy~n-~~r~ip~~i~~L~~lt~l~l 128 (722)
T KOG0532|consen 99 SLESLILYHN-CIRTIPEAICNLEALTFLDL 128 (722)
T ss_pred HHHHHHHHhc-cceecchhhhhhhHHHHhhh
Confidence 3444455444 25666666666666666654
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.29 E-value=0.027 Score=44.16 Aligned_cols=11 Identities=27% Similarity=0.277 Sum_probs=5.1
Q ss_pred CCccCCccCce
Q 037108 27 KLTSLRTMCKF 37 (239)
Q Consensus 27 ~L~~L~~L~~~ 37 (239)
.|.+|++|.++
T Consensus 63 ~Lp~LkkL~ls 73 (260)
T KOG2739|consen 63 KLPKLKKLELS 73 (260)
T ss_pred Ccchhhhhccc
Confidence 34455555443
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.40 E-value=0.34 Score=36.94 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=7.0
Q ss_pred cCCCCcccEEEecc
Q 037108 205 ILSLPTLRKLTVNG 218 (239)
Q Consensus 205 ~~~l~~L~~L~i~~ 218 (239)
+..+|+|+.|++++
T Consensus 136 l~klp~l~~LDF~k 149 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQK 149 (233)
T ss_pred EEecCcceEeehhh
Confidence 34455555555543
No 55
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.56 E-value=0.024 Score=42.83 Aligned_cols=56 Identities=14% Similarity=0.060 Sum_probs=39.6
Q ss_pred eeeccCCCceeeCCCCCCCcCCcccEEeeccCcccccccc----CCCCcccEEEecccccc
Q 037108 145 SRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLL----EYLPSLETLVIRKCEQL 201 (239)
Q Consensus 145 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p----~~l~~L~~L~l~~c~~l 201 (239)
+.+..|..+..|+...-.+.+++|+.|++++|++.+ .-. ..+++|+.|.+.+.+..
T Consensus 130 l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 130 LSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred heeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhHHHHhcCchhh
Confidence 455556666666532223468999999999999887 221 25899999999988753
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=91.40 E-value=0.17 Score=41.57 Aligned_cols=207 Identities=15% Similarity=0.035 Sum_probs=96.4
Q ss_pred cccCcEEeCCCCCCCcc----cCccCCCCccCCccCceEeccCC--CCChh-------hhcccccccceEEEEeccCCCC
Q 037108 4 LIKLHHLNNPSTDSLEE----MPQGIGKLTSLRTMCKFVVGNEI--GSGLR-------QLKSLIHLQGTVCISRLENVKE 70 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~----lP~~i~~L~~L~~L~~~~~~~~~--~~~i~-------~L~~L~~L~~~L~~~~~~~~~~ 70 (239)
...+.+++++|+..-++ +-+.+.+.++|+.-+.....-.. ...+. .|..-.+|+ .+++++.---..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~-~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ-KLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee-EeeccccccCcc
Confidence 45678888888853221 44445566666554432211000 00111 122222344 444443211111
Q ss_pred hhHHHHhccCcccccccceeEEcCCCCCCC----CCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeee
Q 037108 71 ISAAKEAQLNGKRNLKDLLLEWNNSTSNIR----EPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSR 146 (239)
Q Consensus 71 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~ 146 (239)
.......-+++...|++|++.-|....... ......+.......++.|+.+....+.....+..-.. ..
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A-------~~ 180 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA-------EA 180 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH-------HH
Confidence 222333445556778888776332211000 0000011223344456777777766654333321100 11
Q ss_pred eccCCCceeeCC------CC-------CCCcCCcccEEeeccCcccc--cc------ccCCCCcccEEEeccccccc---
Q 037108 147 YARMGKWIPHGS------GK-------SDEGLADLRELFLVSCSKLQ--RT------LLEYLPSLETLVIRKCEQLL--- 202 (239)
Q Consensus 147 l~~~~~l~~~~~------~~-------~~~~~~~L~~L~l~~~~~L~--~~------~p~~l~~L~~L~l~~c~~l~--- 202 (239)
+..++.++.+.. +. .+..+|+|+.|++.+.. ++ |. +| .||.|+.|.+.+|--=.
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~-s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALS-SWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhc-ccchheeecccccccccccH
Confidence 122233333221 11 23347888888888763 22 21 23 57888888888886211
Q ss_pred ----c-ccCCCCcccEEEecccC
Q 037108 203 ----V-SILSLPTLRKLTVNGCK 220 (239)
Q Consensus 203 ----~-~~~~l~~L~~L~i~~c~ 220 (239)
. .-...|+|+.+.+.+|.
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHHHHhccCCCCceeccCcch
Confidence 1 11347888888888764
No 57
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=90.90 E-value=0.059 Score=43.50 Aligned_cols=111 Identities=16% Similarity=0.097 Sum_probs=58.8
Q ss_pred cccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCCh-hhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108 4 LIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGL-RQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK 82 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i-~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 82 (239)
++.+|.|+++.| .+..+-. +..|.+|+.||+....-....+. ..+++.. .|.+.. + .-+ ....++++
T Consensus 306 ~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK----tL~La~--N---~iE-~LSGL~KL 373 (490)
T KOG1259|consen 306 APKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIK----TLKLAQ--N---KIE-TLSGLRKL 373 (490)
T ss_pred ccceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEe----eeehhh--h---hHh-hhhhhHhh
Confidence 567899999999 5776664 77888888888754322111111 1233333 222210 0 000 01223344
Q ss_pred cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccch
Q 037108 83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIY 134 (239)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~ 134 (239)
=+|..|+++.+. ....+-...++.++.|+.+.+.+++....|+.
T Consensus 374 YSLvnLDl~~N~--------Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 374 YSLVNLDLSSNQ--------IEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hhheeccccccc--------hhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 455556655332 11223345667777788888877766555543
No 58
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=88.67 E-value=0.2 Score=42.83 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=26.9
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCce
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKF 37 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~ 37 (239)
+.+++|++|++.++ .++.+...+..+.+|++|++.
T Consensus 92 ~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 92 SKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLS 126 (414)
T ss_pred ccccceeeeecccc-chhhcccchhhhhcchheecc
Confidence 46778888888888 577777667888888888764
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=87.18 E-value=0.036 Score=49.84 Aligned_cols=50 Identities=32% Similarity=0.234 Sum_probs=23.9
Q ss_pred ccEEeeccCccccccccC--CCCcccEEEecccc-----ccccccCCCCcccEEEecccC
Q 037108 168 LRELFLVSCSKLQRTLLE--YLPSLETLVIRKCE-----QLLVSILSLPTLRKLTVNGCK 220 (239)
Q Consensus 168 L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~-----~l~~~~~~l~~L~~L~i~~c~ 220 (239)
|..|.+++. .++ .+-. .+.+|+.|++++.- ++ +-+..+..|..|++.+.|
T Consensus 234 L~~L~lrnN-~l~-tL~gie~LksL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 234 LQLLNLRNN-ALT-TLRGIENLKSLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred heeeeeccc-HHH-hhhhHHhhhhhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCc
Confidence 555555533 333 2221 45566666665321 11 123345566667766654
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=85.10 E-value=0.066 Score=44.96 Aligned_cols=56 Identities=21% Similarity=0.406 Sum_probs=23.6
Q ss_pred CCcccEEeeccCccccc----cccCCCCcccEEEecccccccc-----ccCCCCcccEEEecccC
Q 037108 165 LADLRELFLVSCSKLQR----TLLEYLPSLETLVIRKCEQLLV-----SILSLPTLRKLTVNGCK 220 (239)
Q Consensus 165 ~~~L~~L~l~~~~~L~~----~~p~~l~~L~~L~l~~c~~l~~-----~~~~l~~L~~L~i~~c~ 220 (239)
.|++++|.+.+|.+++. .+..+.++|+++.+..|+.++. ....+++|++++++.|+
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 44444444444444331 1122344444444444444432 11234444444444444
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=84.94 E-value=0.48 Score=40.89 Aligned_cols=37 Identities=35% Similarity=0.573 Sum_probs=19.1
Q ss_pred CCcccEEeeccCccccc----cccCCCCcccEEEecccccc
Q 037108 165 LADLRELFLVSCSKLQR----TLLEYLPSLETLVIRKCEQL 201 (239)
Q Consensus 165 ~~~L~~L~l~~~~~L~~----~~p~~l~~L~~L~l~~c~~l 201 (239)
+++|+.|.+.+|..++. .+...+|.|++|++..|..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 45666666555554331 12234555666666666554
No 62
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.26 E-value=0.62 Score=22.57 Aligned_cols=16 Identities=38% Similarity=0.945 Sum_probs=11.6
Q ss_pred CCcccEEEecccCccc
Q 037108 208 LPTLRKLTVNGCKEVV 223 (239)
Q Consensus 208 l~~L~~L~i~~c~~l~ 223 (239)
+++|++|++++|+++.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3667777787777765
No 63
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=82.72 E-value=0.55 Score=40.17 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=28.8
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceE
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFV 38 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~ 38 (239)
..+.+|++|+++++ .++++. ++..|+.|+.|++..
T Consensus 115 ~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSG 149 (414)
T ss_pred hhhhcchheecccc-cccccc-chhhccchhhheecc
Confidence 46889999999999 588887 488888888887643
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.65 E-value=0.53 Score=38.16 Aligned_cols=40 Identities=33% Similarity=0.399 Sum_probs=24.3
Q ss_pred hccCcccccccceeEEcCCCCCCCCCcchHHHhhcC-CCCCCcceEEEecc
Q 037108 77 AQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLL-KPHQSLKKLKINGY 126 (239)
Q Consensus 77 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~ 126 (239)
+.+.+++.|+.|.++.++.... ..++ .|..+|+.+.+.|.
T Consensus 91 ~ile~lP~l~~LNls~N~L~s~----------I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 91 AILEQLPALTTLNLSCNSLSSD----------IKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred HHHhcCccceEeeccCCcCCCc----------cccCcccccceEEEEEcCC
Confidence 4566777888888775543211 2223 35568888877765
No 65
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.82 E-value=1.4 Score=21.58 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=15.4
Q ss_pred ccCcEEeCCCCCCCcccCc
Q 037108 5 IKLHHLNNPSTDSLEEMPQ 23 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP~ 23 (239)
.+|++|+.++| .++++|+
T Consensus 2 ~~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNN-QLTSLPE 19 (26)
T ss_pred cccceeecCCC-ccccCcc
Confidence 46899999999 5899996
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=79.17 E-value=0.96 Score=34.54 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=49.9
Q ss_pred cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChh-hhcc-cccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLR-QLKS-LIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~-~L~~-L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
+...+||+++. +..++ .+-.+.+|++|.+.... ...|. .|.. ++++. .|.+.+.. +....+ ...+..++
T Consensus 43 ~~d~iDLtdNd-l~~l~-~lp~l~rL~tLll~nNr---It~I~p~L~~~~p~l~-~L~LtnNs-i~~l~d--l~pLa~~p 113 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLD-NLPHLPRLHTLLLNNNR---ITRIDPDLDTFLPNLK-TLILTNNS-IQELGD--LDPLASCP 113 (233)
T ss_pred ccceecccccc-hhhcc-cCCCccccceEEecCCc---ceeeccchhhhccccc-eEEecCcc-hhhhhh--cchhccCC
Confidence 45668888884 66665 36677777877542211 11111 1111 22233 44443311 111111 13355567
Q ss_pred ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEecc
Q 037108 84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGY 126 (239)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 126 (239)
.|+.|.+-.++... ...+. .-.+...++|+.|++.+.
T Consensus 114 ~L~~Ltll~Npv~~----k~~YR--~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEH----KKNYR--LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccceeeecCCchhc----ccCce--eEEEEecCcceEeehhhh
Confidence 77777766443211 00111 112345678888887653
No 67
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.55 E-value=2.1 Score=20.95 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=12.7
Q ss_pred cccCcEEeCCCCCCCccc
Q 037108 4 LIKLHHLNNPSTDSLEEM 21 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~l 21 (239)
|++|+.|+++.| .++.+
T Consensus 1 L~~L~~L~L~~N-kI~~I 17 (26)
T smart00365 1 LTNLEELDLSQN-KIKKI 17 (26)
T ss_pred CCccCEEECCCC-cccee
Confidence 578999999998 46543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.68 E-value=0.34 Score=38.85 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=13.3
Q ss_pred cCcEEeCCCCCCCcccCccCCCCccCCccCc
Q 037108 6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCK 36 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~ 36 (239)
+-+-|+..|| .+.++-- +.+|..|++|.+
T Consensus 20 ~vkKLNcwg~-~L~DIsi-c~kMp~lEVLsL 48 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDISI-CEKMPLLEVLSL 48 (388)
T ss_pred HhhhhcccCC-CccHHHH-HHhcccceeEEe
Confidence 3444555555 3444331 344555555543
No 69
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.65 E-value=3.1 Score=33.98 Aligned_cols=54 Identities=30% Similarity=0.383 Sum_probs=28.9
Q ss_pred cCCcccEEeeccCccccc---cccCCCCcccEEEecccc----ccccccCCCCcccEEEecc
Q 037108 164 GLADLRELFLVSCSKLQR---TLLEYLPSLETLVIRKCE----QLLVSILSLPTLRKLTVNG 218 (239)
Q Consensus 164 ~~~~L~~L~l~~~~~L~~---~~p~~l~~L~~L~l~~c~----~l~~~~~~l~~L~~L~i~~ 218 (239)
.+|.|++|+++ |+.|.. .+|....+|+.|.+.+-. .....+..+|.++++++++
T Consensus 95 ~lP~l~~LNls-~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 95 QLPALTTLNLS-CNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred cCccceEeecc-CCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence 47777777776 555542 334345567777665432 1222344555555554443
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=67.76 E-value=2.6 Score=33.37 Aligned_cols=91 Identities=23% Similarity=0.200 Sum_probs=45.3
Q ss_pred cCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccccceeEEcCCCCCCC
Q 037108 21 MPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIR 100 (239)
Q Consensus 21 lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 100 (239)
++.-...+..|+.|+...+. -..+.++..|++|+ +|.+++...- ....+......+++|+.+.++.+..
T Consensus 35 ~~gl~d~~~~le~ls~~n~g---ltt~~~~P~Lp~Lk-kL~lsdn~~~--~~~~l~vl~e~~P~l~~l~ls~Nki----- 103 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVG---LTTLTNFPKLPKLK-KLELSDNYRR--VSGGLEVLAEKAPNLKVLNLSGNKI----- 103 (260)
T ss_pred cccccccccchhhhhhhccc---eeecccCCCcchhh-hhcccCCccc--ccccceehhhhCCceeEEeecCCcc-----
Confidence 33333445566666543322 23455666677777 6776544211 1111122233447888888875431
Q ss_pred CCcchHHHhhcCCC---CCCcceEEEeccCC
Q 037108 101 EPETDTCVLDLLKP---HQSLKKLKINGYGG 128 (239)
Q Consensus 101 ~~~~~~~~~~~l~~---~~~L~~L~l~~~~~ 128 (239)
+.++++.+ +.+|..|.+..|..
T Consensus 104 ------~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 104 ------KDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred ------ccccccchhhhhcchhhhhcccCCc
Confidence 11333333 45666666666544
No 71
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.92 E-value=4.7 Score=19.87 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=10.9
Q ss_pred ccCcEEeCCCCCCCc
Q 037108 5 IKLHHLNNPSTDSLE 19 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~ 19 (239)
++|++|+|++|. ++
T Consensus 2 ~~L~~LdL~~N~-i~ 15 (28)
T smart00368 2 PSLRELDLSNNK-LG 15 (28)
T ss_pred CccCEEECCCCC-CC
Confidence 578999999984 43
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=65.97 E-value=0.77 Score=32.94 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=16.2
Q ss_pred CCcccEEeeccCccccccccC---CCCcccEEEecccc
Q 037108 165 LADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE 199 (239)
Q Consensus 165 ~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~ 199 (239)
||-++.+++.+. ++. .+|. .+|.|+.|.++..+
T Consensus 76 f~t~t~lNl~~n-eis-dvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 76 FPTATTLNLANN-EIS-DVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred cchhhhhhcchh-hhh-hchHHHhhhHHhhhcccccCc
Confidence 444555555533 443 4443 45555555555444
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=63.43 E-value=4.8 Score=18.77 Aligned_cols=15 Identities=13% Similarity=0.178 Sum_probs=9.1
Q ss_pred cccCcEEeCCCCCCCc
Q 037108 4 LIKLHHLNNPSTDSLE 19 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~ 19 (239)
+++|++|++++|. ++
T Consensus 1 ~~~L~~L~l~~n~-i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-IT 15 (24)
T ss_dssp -TT-SEEE-TSSB-EH
T ss_pred CCCCCEEEccCCc-CC
Confidence 3678999999884 43
No 74
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=63.09 E-value=1.4 Score=40.17 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=14.2
Q ss_pred ccCcEEeCCCCCCCcccCccCCCCccCCccCc
Q 037108 5 IKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCK 36 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~ 36 (239)
..|++|+|+.|. +.+.- .+..+..|++||+
T Consensus 187 ~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDl 216 (1096)
T KOG1859|consen 187 PALESLNLSHNK-FTKVD-NLRRLPKLKHLDL 216 (1096)
T ss_pred HHhhhhccchhh-hhhhH-HHHhccccccccc
Confidence 345555555552 33332 3444555555544
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=56.86 E-value=5.4 Score=34.37 Aligned_cols=59 Identities=31% Similarity=0.514 Sum_probs=37.9
Q ss_pred cCCcccEEeeccCccccc----cccCCCCcccEEEecccccccc-----ccCCCCcccEEEecccCcc
Q 037108 164 GLADLRELFLVSCSKLQR----TLLEYLPSLETLVIRKCEQLLV-----SILSLPTLRKLTVNGCKEV 222 (239)
Q Consensus 164 ~~~~L~~L~l~~~~~L~~----~~p~~l~~L~~L~l~~c~~l~~-----~~~~l~~L~~L~i~~c~~l 222 (239)
..++|+.+++..|..+.. .+....|+|+.|.+.+|..+.. ....+++|++|+++.|..+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 357777777777754431 1222467888888777776432 3446777888888877765
No 76
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.56 E-value=2.3 Score=34.31 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=30.4
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhccccccc
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQ 57 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~ 57 (239)
++..|+.|.|+-| .++.+-+ +..-++|+.|++......+...+..|++++.||
T Consensus 39 kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 39 KMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred hcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 4566777777777 4666643 666777777766443332333344455555554
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=41.35 E-value=37 Score=27.63 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=22.8
Q ss_pred cccCcEEeCCCCCCCcccCcc----CCCCccCCccCceEe
Q 037108 4 LIKLHHLNNPSTDSLEEMPQG----IGKLTSLRTMCKFVV 39 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~lP~~----i~~L~~L~~L~~~~~ 39 (239)
.++|+..++++|.+-...|+. |.+-+.|.+|.+..+
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 357788888887544445543 556677777765443
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=36.42 E-value=1.3e+02 Score=20.20 Aligned_cols=55 Identities=11% Similarity=0.194 Sum_probs=29.7
Q ss_pred CCCcCCcccEEeeccCccccccccC----CCCcccEEEecc-cccccc-ccCCCCcccEEEecc
Q 037108 161 SDEGLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRK-CEQLLV-SILSLPTLRKLTVNG 218 (239)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~-c~~l~~-~~~~l~~L~~L~i~~ 218 (239)
.+..+++|+.+++.+ .++ .++. ..++++.+.+.+ ...+.. .+..+++++.+.+..
T Consensus 30 ~F~~~~~l~~i~~~~--~~~-~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 30 AFSNCTSLKSINFPN--NLT-SIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTTT-TT-SEEEESS--TTS-CE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEETT
T ss_pred hcccccccccccccc--ccc-ccceeeeecccccccccccccccccccccccccccccccccCc
Confidence 445566888888874 244 4443 456788888854 223322 445678888888853
No 79
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=28.37 E-value=97 Score=16.88 Aligned_cols=8 Identities=25% Similarity=0.646 Sum_probs=4.6
Q ss_pred CcccEEee
Q 037108 166 ADLRELFL 173 (239)
Q Consensus 166 ~~L~~L~l 173 (239)
+++++|.+
T Consensus 12 ~~l~~L~~ 19 (44)
T PF05725_consen 12 SSLKSLIF 19 (44)
T ss_pred CCCeEEEE
Confidence 45566666
Done!