Query 037108
Match_columns 239
No_of_seqs 148 out of 1166
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 14:40:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 2.6E-18 8.9E-23 140.4 11.4 221 4-238 80-306 (328)
2 4fcg_A Uncharacterized protein 99.6 1.1E-15 3.7E-20 124.8 11.8 200 1-218 100-310 (328)
3 1ogq_A PGIP-2, polygalacturona 99.5 8.1E-15 2.8E-19 118.8 5.2 214 5-237 50-295 (313)
4 1ogq_A PGIP-2, polygalacturona 99.5 6.5E-14 2.2E-18 113.5 9.5 194 29-238 50-273 (313)
5 3rgz_A Protein brassinosteroid 99.5 5.2E-14 1.8E-18 127.1 9.3 79 159-238 625-709 (768)
6 2id5_A Lingo-1, leucine rich r 99.5 4.5E-13 1.5E-17 114.5 13.3 84 2-92 53-137 (477)
7 3rgz_A Protein brassinosteroid 99.5 7.4E-14 2.5E-18 126.1 8.8 217 4-239 393-686 (768)
8 2id5_A Lingo-1, leucine rich r 99.5 3.4E-13 1.2E-17 115.3 12.4 71 166-238 224-301 (477)
9 3t6q_A CD180 antigen; protein- 99.5 1.7E-13 5.7E-18 120.4 10.7 220 2-235 275-526 (606)
10 1ozn_A Reticulon 4 receptor; N 99.4 5.6E-13 1.9E-17 106.4 10.3 198 4-220 31-236 (285)
11 3v47_A TOLL-like receptor 5B a 99.4 1.3E-12 4.5E-17 110.8 12.2 36 2-37 51-87 (455)
12 3v47_A TOLL-like receptor 5B a 99.4 4.5E-13 1.5E-17 113.7 9.2 110 5-129 30-142 (455)
13 3o6n_A APL1; leucine-rich repe 99.4 5.2E-13 1.8E-17 111.2 9.1 87 1-94 89-176 (390)
14 4fmz_A Internalin; leucine ric 99.4 1.2E-12 4.1E-17 107.3 11.1 73 162-238 261-338 (347)
15 1ozn_A Reticulon 4 receptor; N 99.4 1.1E-12 3.6E-17 104.8 10.5 209 8-238 14-230 (285)
16 4eco_A Uncharacterized protein 99.4 1.7E-13 5.7E-18 121.3 6.3 62 159-222 369-446 (636)
17 1xku_A Decorin; proteoglycan, 99.4 7.5E-13 2.6E-17 107.8 9.4 102 112-220 167-274 (330)
18 4eco_A Uncharacterized protein 99.4 3E-13 1E-17 119.7 7.2 204 1-222 202-470 (636)
19 2z81_A CD282 antigen, TOLL-lik 99.4 7.7E-13 2.6E-17 114.8 8.7 64 165-230 333-407 (549)
20 3zyj_A Leucine-rich repeat-con 99.4 2E-12 6.8E-17 109.5 11.0 82 5-93 64-146 (440)
21 3zyi_A Leucine-rich repeat-con 99.4 1.9E-12 6.3E-17 110.1 10.6 194 5-220 75-277 (452)
22 3oja_B Anopheles plasmodium-re 99.4 1E-12 3.4E-17 115.5 8.7 227 1-236 95-351 (597)
23 4fmz_A Internalin; leucine ric 99.4 3.5E-12 1.2E-16 104.5 11.1 206 1-237 106-315 (347)
24 3t6q_A CD180 antigen; protein- 99.4 2.9E-12 9.9E-17 112.5 11.2 230 1-237 297-551 (606)
25 1wwl_A Monocyte differentiatio 99.4 8.8E-13 3E-17 106.7 7.3 199 3-219 93-306 (312)
26 2z80_A TOLL-like receptor 2, v 99.4 1.2E-12 4E-17 107.7 8.1 114 1-129 72-187 (353)
27 2z66_A Variable lymphocyte rec 99.4 8.9E-13 3.1E-17 106.2 6.8 197 2-220 49-259 (306)
28 2ast_B S-phase kinase-associat 99.3 1.1E-13 3.9E-18 112.8 1.2 202 5-219 70-282 (336)
29 2xwt_C Thyrotropin receptor; s 99.3 5.9E-12 2E-16 97.9 10.3 188 6-237 32-233 (239)
30 3zyj_A Leucine-rich repeat-con 99.3 4.8E-12 1.6E-16 107.1 10.4 76 162-238 203-284 (440)
31 3o6n_A APL1; leucine-rich repe 99.3 4.6E-12 1.6E-16 105.5 9.9 215 3-237 67-299 (390)
32 2ast_B S-phase kinase-associat 99.3 3.9E-13 1.3E-17 109.6 3.2 198 6-223 48-261 (336)
33 3zyi_A Leucine-rich repeat-con 99.3 5E-12 1.7E-16 107.4 10.1 210 7-238 56-271 (452)
34 2z7x_B TOLL-like receptor 1, v 99.3 3.5E-12 1.2E-16 110.1 9.1 211 5-238 247-473 (520)
35 1o6v_A Internalin A; bacterial 99.3 2.8E-11 9.6E-16 103.2 14.5 57 2-64 87-143 (466)
36 2z7x_B TOLL-like receptor 1, v 99.3 1.4E-11 4.7E-16 106.3 12.6 16 48-64 109-124 (520)
37 1o6v_A Internalin A; bacterial 99.3 1.6E-11 5.5E-16 104.6 12.7 81 2-94 65-145 (466)
38 3oja_B Anopheles plasmodium-re 99.3 6E-12 2.1E-16 110.6 9.7 215 3-237 73-305 (597)
39 3o53_A Protein LRIM1, AGAP0063 99.3 1.7E-12 5.9E-17 105.2 5.5 56 3-63 32-88 (317)
40 1h6u_A Internalin H; cell adhe 99.3 1.6E-11 5.4E-16 99.2 10.9 186 3-220 39-228 (308)
41 3vq2_A TLR4, TOLL-like recepto 99.3 6.4E-12 2.2E-16 110.3 9.3 217 2-239 282-527 (606)
42 2z66_A Variable lymphocyte rec 99.3 1.5E-12 5E-17 105.0 4.8 215 5-237 28-252 (306)
43 4ecn_A Leucine-rich repeat pro 99.3 3.6E-12 1.2E-16 116.0 7.7 116 1-132 444-589 (876)
44 2ft3_A Biglycan; proteoglycan, 99.3 3.8E-12 1.3E-16 103.8 7.3 60 160-220 211-275 (332)
45 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 3.2E-11 1.1E-15 105.1 13.4 31 189-219 451-483 (562)
46 3vq2_A TLR4, TOLL-like recepto 99.3 2.2E-12 7.5E-17 113.3 6.0 198 2-220 347-556 (606)
47 2o6q_A Variable lymphocyte rec 99.3 4.4E-11 1.5E-15 94.7 12.1 192 6-220 17-216 (270)
48 2o6q_A Variable lymphocyte rec 99.3 4.1E-11 1.4E-15 94.8 11.8 174 5-199 37-216 (270)
49 3rfs_A Internalin B, repeat mo 99.3 2.7E-11 9.3E-16 96.0 10.6 171 3-219 39-215 (272)
50 1h6u_A Internalin H; cell adhe 99.3 3.6E-11 1.2E-15 97.1 11.4 167 2-199 60-228 (308)
51 4ecn_A Leucine-rich repeat pro 99.3 9.5E-12 3.2E-16 113.2 8.9 82 3-94 546-630 (876)
52 1xku_A Decorin; proteoglycan, 99.2 3.4E-11 1.2E-15 98.0 10.5 217 1-238 72-324 (330)
53 4ezg_A Putative uncharacterize 99.2 2.4E-11 8.1E-16 91.7 8.8 55 3-63 42-96 (197)
54 1wwl_A Monocyte differentiatio 99.2 1.3E-11 4.4E-16 99.8 7.8 175 2-199 118-307 (312)
55 3rfs_A Internalin B, repeat mo 99.2 1.1E-11 3.8E-16 98.3 7.3 169 2-218 60-231 (272)
56 2z63_A TOLL-like receptor 4, v 99.2 1.8E-11 6.1E-16 106.6 9.1 217 2-238 279-523 (570)
57 2z62_A TOLL-like receptor 4, v 99.2 1.7E-11 5.8E-16 97.3 7.8 193 5-218 28-233 (276)
58 3j0a_A TOLL-like receptor 5; m 99.2 4E-11 1.4E-15 109.3 11.0 72 166-238 266-343 (844)
59 2z63_A TOLL-like receptor 4, v 99.2 1.4E-11 4.7E-16 107.3 7.5 73 163-237 322-400 (570)
60 3bz5_A Internalin-J, INLJ; leu 99.2 1.3E-10 4.3E-15 98.9 13.2 200 2-233 39-257 (457)
61 3j0a_A TOLL-like receptor 5; m 99.2 7.7E-11 2.6E-15 107.5 12.4 89 1-95 69-160 (844)
62 3oja_A Leucine-rich immune mol 99.2 1.2E-11 4.2E-16 106.0 6.7 55 4-63 33-88 (487)
63 3bz5_A Internalin-J, INLJ; leu 99.2 8.3E-11 2.8E-15 100.1 11.7 55 1-63 81-135 (457)
64 1ziw_A TOLL-like receptor 3; i 99.2 6E-11 2E-15 105.6 10.9 51 168-219 250-306 (680)
65 2ft3_A Biglycan; proteoglycan, 99.2 7.7E-11 2.6E-15 96.0 10.6 218 1-238 74-325 (332)
66 2xwt_C Thyrotropin receptor; s 99.2 6.4E-11 2.2E-15 92.0 9.3 176 1-222 51-239 (239)
67 1p9a_G Platelet glycoprotein I 99.2 5E-11 1.7E-15 95.5 7.7 193 2-220 7-206 (290)
68 2z81_A CD282 antigen, TOLL-lik 99.2 4.1E-11 1.4E-15 103.9 7.7 189 5-220 310-508 (549)
69 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 1.3E-10 4.4E-15 101.3 9.6 190 6-220 277-508 (562)
70 4glp_A Monocyte differentiatio 99.1 1.6E-10 5.6E-15 93.2 9.5 201 4-220 90-305 (310)
71 4g8a_A TOLL-like receptor 4; l 99.1 2E-10 6.7E-15 101.0 10.5 35 2-37 73-108 (635)
72 4ay9_X Follicle-stimulating ho 99.1 3.5E-10 1.2E-14 92.9 11.3 86 5-95 30-116 (350)
73 1h6t_A Internalin B; cell adhe 99.1 2E-10 6.9E-15 91.9 9.5 163 3-219 44-210 (291)
74 2z62_A TOLL-like receptor 4, v 99.1 4E-11 1.4E-15 95.1 5.3 178 1-198 48-234 (276)
75 1m9s_A Internalin B; cell inva 99.1 1.3E-10 4.5E-15 102.0 9.0 164 3-219 41-207 (605)
76 3g06_A SSPH2 (leucine-rich rep 99.1 4.9E-10 1.7E-14 98.6 12.2 69 165-237 220-288 (622)
77 2z80_A TOLL-like receptor 2, v 99.1 2.4E-10 8.2E-15 93.9 9.2 203 1-220 96-312 (353)
78 3m19_A Variable lymphocyte rec 99.1 5.6E-10 1.9E-14 87.3 10.2 168 6-219 15-189 (251)
79 1jl5_A Outer protein YOPM; leu 99.1 6.3E-11 2.1E-15 100.8 4.8 36 3-39 9-44 (454)
80 4glp_A Monocyte differentiatio 99.1 2.6E-10 8.8E-15 92.0 7.8 181 2-199 114-305 (310)
81 1ziw_A TOLL-like receptor 3; i 99.1 6E-10 2.1E-14 99.1 10.5 183 22-220 398-595 (680)
82 1p9a_G Platelet glycoprotein I 99.1 9.5E-10 3.2E-14 88.0 10.2 171 5-199 31-206 (290)
83 2ca6_A RAN GTPase-activating p 99.0 1.8E-11 6E-16 101.9 -0.1 89 3-93 30-132 (386)
84 1jl5_A Outer protein YOPM; leu 99.0 2.3E-10 8E-15 97.2 6.3 201 1-237 30-241 (454)
85 3o53_A Protein LRIM1, AGAP0063 99.0 7.5E-11 2.6E-15 95.5 3.0 189 2-222 55-250 (317)
86 2ca6_A RAN GTPase-activating p 99.0 1.1E-11 3.9E-16 103.0 -2.1 210 1-220 56-314 (386)
87 4ay9_X Follicle-stimulating ho 99.0 1.8E-09 6E-14 88.7 10.9 199 1-218 50-255 (350)
88 3oja_A Leucine-rich immune mol 99.0 8.5E-11 2.9E-15 100.8 3.2 190 1-222 54-250 (487)
89 1h6t_A Internalin B; cell adhe 99.0 1.7E-09 5.7E-14 86.6 9.6 145 2-199 65-211 (291)
90 1m9s_A Internalin B; cell inva 99.0 1.9E-09 6.5E-14 94.7 9.8 146 1-199 61-208 (605)
91 3m19_A Variable lymphocyte rec 98.9 3.6E-09 1.2E-13 82.7 9.1 151 5-199 35-190 (251)
92 3g06_A SSPH2 (leucine-rich rep 98.9 4.6E-08 1.6E-12 86.2 15.7 69 165-237 200-268 (622)
93 3goz_A Leucine-rich repeat-con 98.9 2.2E-10 7.4E-15 94.5 0.2 227 3-239 20-290 (362)
94 4ezg_A Putative uncharacterize 98.9 7.6E-09 2.6E-13 77.8 8.7 15 112-126 84-98 (197)
95 1xeu_A Internalin C; cellular 98.9 1.3E-09 4.6E-14 85.9 4.6 143 3-199 39-183 (263)
96 3ogk_B Coronatine-insensitive 98.9 1.5E-09 5.1E-14 94.9 4.6 54 165-220 462-524 (592)
97 1dce_A Protein (RAB geranylger 98.8 2.4E-11 8.3E-16 105.9 -7.6 177 2-220 346-544 (567)
98 2o6s_A Variable lymphocyte rec 98.8 1.4E-08 4.7E-13 77.0 8.0 30 6-36 29-59 (208)
99 2ell_A Acidic leucine-rich nuc 98.8 5.3E-09 1.8E-13 76.5 5.0 57 3-64 22-80 (168)
100 2o6s_A Variable lymphocyte rec 98.8 1.5E-08 5.2E-13 76.7 7.3 161 8-218 10-174 (208)
101 4g8a_A TOLL-like receptor 4; l 98.7 1.6E-08 5.3E-13 88.8 7.6 58 160-218 512-576 (635)
102 3ogk_B Coronatine-insensitive 98.7 2.3E-10 7.9E-15 100.1 -4.1 55 163-218 290-351 (592)
103 1xeu_A Internalin C; cellular 98.7 1.3E-08 4.3E-13 80.3 6.1 162 4-220 18-183 (263)
104 2v70_A SLIT-2, SLIT homolog 2 98.7 6E-08 2.1E-12 74.2 8.0 149 7-199 13-164 (220)
105 3cvr_A Invasion plasmid antige 98.7 1.2E-07 4.1E-12 82.6 10.7 184 6-231 60-252 (571)
106 2je0_A Acidic leucine-rich nuc 98.7 8.9E-09 3.1E-13 73.8 3.0 114 3-133 15-130 (149)
107 3e6j_A Variable lymphocyte rec 98.7 1E-07 3.6E-12 73.4 8.9 144 8-198 22-169 (229)
108 3cvr_A Invasion plasmid antige 98.6 1E-07 3.6E-12 83.0 9.2 153 4-199 79-241 (571)
109 1z7x_W Ribonuclease inhibitor; 98.6 3.2E-09 1.1E-13 90.0 -1.3 56 164-220 339-409 (461)
110 2v9t_B SLIT homolog 2 protein 98.6 1.5E-07 5E-12 72.1 8.1 145 8-199 14-163 (220)
111 2v9t_B SLIT homolog 2 protein 98.6 1.1E-07 3.8E-12 72.7 6.9 130 5-176 32-162 (220)
112 2p1m_B Transport inhibitor res 98.6 9.4E-10 3.2E-14 96.2 -5.5 54 164-218 287-347 (594)
113 1z7x_W Ribonuclease inhibitor; 98.5 5E-09 1.7E-13 88.8 -2.0 56 164-220 254-324 (461)
114 2p1m_B Transport inhibitor res 98.5 6.2E-09 2.1E-13 91.0 -1.7 197 3-221 287-518 (594)
115 3e6j_A Variable lymphocyte rec 98.5 1.7E-07 5.6E-12 72.2 6.4 131 4-177 39-170 (229)
116 2xot_A Amphoterin-induced prot 98.5 1E-07 3.5E-12 78.4 5.5 151 6-197 40-198 (361)
117 3goz_A Leucine-rich repeat-con 98.4 4.7E-08 1.6E-12 80.5 1.5 208 3-220 48-295 (362)
118 2xot_A Amphoterin-induced prot 98.4 2.2E-07 7.7E-12 76.4 5.4 166 8-219 21-199 (361)
119 2v70_A SLIT-2, SLIT homolog 2 98.4 3.5E-07 1.2E-11 70.0 5.7 130 5-176 32-163 (220)
120 2je0_A Acidic leucine-rich nuc 98.4 3.4E-07 1.2E-11 65.4 5.1 77 162-239 60-146 (149)
121 4b8c_D Glucose-repressible alc 98.4 2.9E-07 9.9E-12 82.6 5.7 110 2-130 221-330 (727)
122 2ell_A Acidic leucine-rich nuc 98.4 8.3E-07 2.8E-11 64.7 6.8 126 54-223 24-161 (168)
123 1w8a_A SLIT protein; signaling 98.3 8.7E-07 3E-11 66.2 5.6 127 7-176 10-136 (192)
124 2wfh_A SLIT homolog 2 protein 98.2 3.9E-06 1.3E-10 62.7 7.5 124 8-176 13-136 (193)
125 3e4g_A ATP synthase subunit S, 98.1 3.3E-06 1.1E-10 61.9 5.6 63 163-225 82-155 (176)
126 2wfh_A SLIT homolog 2 protein 98.1 2.6E-06 9E-11 63.7 5.0 106 5-127 31-137 (193)
127 1a9n_A U2A', U2A'; complex (nu 98.1 1.3E-06 4.4E-11 64.2 2.7 134 3-177 17-151 (176)
128 1dce_A Protein (RAB geranylger 98.0 2.5E-06 8.4E-11 74.4 3.4 109 6-133 442-550 (567)
129 4b8c_D Glucose-repressible alc 98.0 4.6E-06 1.6E-10 74.8 5.3 110 112-227 220-334 (727)
130 1w8a_A SLIT protein; signaling 98.0 3.1E-06 1.1E-10 63.2 3.4 107 6-128 30-138 (192)
131 2o6r_A Variable lymphocyte rec 98.0 2E-05 6.8E-10 57.8 7.8 127 7-177 9-135 (177)
132 1ds9_A Outer arm dynein; leuci 98.0 1.1E-07 3.7E-12 71.5 -5.1 34 164-199 113-151 (198)
133 2o6r_A Variable lymphocyte rec 97.7 0.00012 4.2E-09 53.5 8.0 57 162-220 72-135 (177)
134 3sb4_A Hypothetical leucine ri 97.7 7.1E-05 2.4E-09 60.5 7.0 75 161-238 245-326 (329)
135 1ds9_A Outer arm dynein; leuci 97.7 3.5E-06 1.2E-10 63.1 -0.7 35 3-39 46-80 (198)
136 1a9n_A U2A', U2A'; complex (nu 97.7 9.1E-06 3.1E-10 59.6 1.3 109 6-127 43-151 (176)
137 3g39_A Variable lymphocyte rec 97.5 0.00011 3.8E-09 53.5 5.2 105 6-128 10-114 (170)
138 3e4g_A ATP synthase subunit S, 97.5 4.7E-05 1.6E-09 55.8 2.7 98 20-130 52-153 (176)
139 2r9u_A Variable lymphocyte rec 97.5 0.00018 6.2E-09 52.6 5.9 105 7-130 14-119 (174)
140 3g39_A Variable lymphocyte rec 97.4 9.2E-05 3.2E-09 53.9 3.7 84 4-94 29-113 (170)
141 2r9u_A Variable lymphocyte rec 97.4 0.0001 3.6E-09 53.9 3.7 83 5-94 33-116 (174)
142 2ra8_A Uncharacterized protein 97.3 0.00021 7.3E-09 58.6 4.7 166 20-220 130-318 (362)
143 2ifg_A High affinity nerve gro 97.1 0.00018 6.2E-09 58.4 2.7 78 10-93 13-90 (347)
144 2ifg_A High affinity nerve gro 97.1 0.0003 1E-08 57.1 3.2 86 1-94 27-114 (347)
145 2ra8_A Uncharacterized protein 96.8 0.00099 3.4E-08 54.6 4.5 59 164-223 217-292 (362)
146 3un9_A NLR family member X1; l 96.8 2.1E-05 7.2E-10 64.9 -5.6 114 5-127 72-194 (372)
147 3sb4_A Hypothetical leucine ri 96.8 0.0024 8.2E-08 51.4 6.2 70 165-238 225-302 (329)
148 4fdw_A Leucine rich hypothetic 96.0 0.08 2.7E-06 43.9 11.5 29 6-36 158-187 (401)
149 3rw6_A Nuclear RNA export fact 95.4 0.003 1E-07 49.5 0.3 34 3-37 168-204 (267)
150 1io0_A Tropomodulin; LRR prote 95.2 0.0054 1.8E-07 45.1 1.1 117 3-127 34-162 (185)
151 3un9_A NLR family member X1; l 94.6 0.0014 4.6E-08 54.1 -3.8 115 5-128 101-223 (372)
152 3rw6_A Nuclear RNA export fact 94.6 0.023 8E-07 44.4 3.3 74 164-239 168-257 (267)
153 1io0_A Tropomodulin; LRR prote 93.8 0.025 8.5E-07 41.5 1.9 121 71-220 24-162 (185)
154 3rfe_A Platelet glycoprotein I 86.2 0.41 1.4E-05 32.7 2.4 31 6-37 32-63 (130)
155 4fdw_A Leucine rich hypothetic 76.5 12 0.00041 30.7 8.2 50 166-218 248-309 (401)
156 4gt6_A Cell surface protein; l 67.4 12 0.0004 30.4 6.2 14 205-218 353-366 (394)
157 3rfe_A Platelet glycoprotein I 65.6 5.8 0.0002 26.8 3.4 33 165-199 30-66 (130)
158 4fs7_A Uncharacterized protein 62.5 21 0.00072 28.8 6.8 51 187-239 342-394 (394)
159 4gt6_A Cell surface protein; l 57.5 34 0.0011 27.6 7.2 32 186-217 309-342 (394)
160 4fs7_A Uncharacterized protein 35.6 57 0.0019 26.2 5.2 52 163-217 294-351 (394)
161 4h09_A Hypothetical leucine ri 24.9 67 0.0023 25.5 3.9 8 166-173 263-270 (379)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=2.6e-18 Score=140.37 Aligned_cols=221 Identities=19% Similarity=0.211 Sum_probs=151.0
Q ss_pred cccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 4 LIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
..++++|+++++ .++.+|..++++++|++|++...... .....++++++|+ .|++.+..- . ..+..+.+++
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~-~L~Ls~n~l-~----~lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLE-TLTLARNPL-R----ALPASIASLN 150 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCS-EEEEESCCC-C----CCCGGGGGCT
T ss_pred ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCC-EEECCCCcc-c----cCcHHHhcCc
Confidence 467899999998 58899999999999999987654322 2334567777888 888865432 1 2244577788
Q ss_pred ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCC
Q 037108 84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDE 163 (239)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~ 163 (239)
+|+.|+++.+..................+..+++|+.|++.++....+|.++..+..-. .|.+.+. .+. ..+..++
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~-~L~L~~N-~l~--~l~~~l~ 226 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK-SLKIRNS-PLS--ALGPAIH 226 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCC-EEEEESS-CCC--CCCGGGG
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCC-EEEccCC-CCC--cCchhhc
Confidence 99999999865433222221111112223447789999999887777776542221100 1233222 111 1234567
Q ss_pred cCCcccEEeeccCccccccccC---CCCcccEEEecccccc---ccccCCCCcccEEEecccCccccccccccCccceEe
Q 037108 164 GLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQL---LVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVL 237 (239)
Q Consensus 164 ~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~l---~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~ 237 (239)
.+++|++|++++|... +.+|. .+++|++|++++|... +..+..+++|++|++++|+.+...|..+.++++|++
T Consensus 227 ~l~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 227 HLPKLEELDLRGCTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp GCTTCCEEECTTCTTC-CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred cCCCCCEEECcCCcch-hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 8999999999998655 47775 5789999999998754 335678999999999999999999999988888876
Q ss_pred e
Q 037108 238 W 238 (239)
Q Consensus 238 ~ 238 (239)
+
T Consensus 306 l 306 (328)
T 4fcg_A 306 I 306 (328)
T ss_dssp E
T ss_pred E
Confidence 5
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.65 E-value=1.1e-15 Score=124.85 Aligned_cols=200 Identities=24% Similarity=0.229 Sum_probs=140.4
Q ss_pred CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHH-----H
Q 037108 1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAA-----K 75 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~-----~ 75 (239)
++++++|++|++++| .+..+|..++++++|++|++...... .....++++++|+ .|++.+.......... .
T Consensus 100 l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~-~L~L~~n~~~~~~p~~~~~~~~ 175 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLR-ELSIRACPELTELPEPLASTDA 175 (328)
T ss_dssp GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCC-EEEEEEETTCCCCCSCSEEEC-
T ss_pred hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCC-EEECCCCCCccccChhHhhccc
Confidence 356899999999999 57899999999999999988654432 3345688888888 8998775433221110 0
Q ss_pred HhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCcee
Q 037108 76 EAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIP 155 (239)
Q Consensus 76 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~ 155 (239)
...+.++++|+.|+++.+... .++..+..+++|+.|++.++....+|..+..+..- ..|.+.++.....
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~----------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L-~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIR----------SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL-EELDLRGCTALRN 244 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCC----------CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTC-CEEECTTCTTCCB
T ss_pred hhhhccCCCCCEEECcCCCcC----------cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCC-CEEECcCCcchhh
Confidence 112345889999999987532 23345566789999999998877777644221100 0144444333222
Q ss_pred eCCCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc---cccccCCCCcccEEEecc
Q 037108 156 HGSGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ---LLVSILSLPTLRKLTVNG 218 (239)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~i~~ 218 (239)
. +..++.+++|++|++++|+... .+|. .+++|++|++++|+. ++..+..+++|+.+.+..
T Consensus 245 ~--p~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 245 Y--PPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp C--CCCTTCCCCCCEEECTTCTTCC-BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred h--HHHhcCCCCCCEEECCCCCchh-hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 2 4567889999999999997664 8875 689999999999885 445778889999888764
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.51 E-value=8.1e-15 Score=118.84 Aligned_cols=214 Identities=15% Similarity=0.117 Sum_probs=114.1
Q ss_pred ccCcEEeCCCCCCCc---ccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 5 IKLHHLNNPSTDSLE---EMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~---~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
.+++.|+++++. +. .+|..++++++|++|++.......+.....++++++|+ .|++.+..- ....+..+.+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~-~L~Ls~n~l----~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH-YLYITHTNV----SGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCS-EEEEEEECC----EEECCGGGGG
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCC-EEECcCCee----CCcCCHHHhC
Confidence 467778887774 44 57777888888888877643322333445566677777 677654331 1122334556
Q ss_pred ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCC-Cccchhhhcc---------Ccc-------ee
Q 037108 82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGT-KFAIYTLSIT---------GDS-------LF 144 (239)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~l~l~---------~~~-------~~ 144 (239)
+++|+.|+++.+.... .++..+..+++|+.|++.++... .+|..+..+. +.. .|
T Consensus 124 l~~L~~L~Ls~N~l~~---------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSG---------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194 (313)
T ss_dssp CTTCCEEECCSSEEES---------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred CCCCCEEeCCCCccCC---------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence 6677777766443110 12233344556666666655433 2333321111 000 00
Q ss_pred -------eeeccCCCceeeCCCCCCCcCCcccEEeeccCccccccccC--CCCcccEEEecccc---ccccccCCCCccc
Q 037108 145 -------SRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCE---QLLVSILSLPTLR 212 (239)
Q Consensus 145 -------L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~---~l~~~~~~l~~L~ 212 (239)
+.+.+. .+.. ..+..++.+++|++|+++++ .+.+.+|. .+++|++|+++++. .++..+..+++|+
T Consensus 195 ~~l~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 195 ANLNLAFVDLSRN-MLEG-DASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp GGCCCSEEECCSS-EEEE-CCGGGCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred hCCcccEEECcCC-cccC-cCCHHHhcCCCCCEEECCCC-ceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence 111110 0110 01334566778888888766 45444443 56788888887765 2344566788888
Q ss_pred EEEecccCccccccccccCccceEe
Q 037108 213 KLTVNGCKEVVGRAINLSSSSSVVL 237 (239)
Q Consensus 213 ~L~i~~c~~l~~~~~~~~~l~~L~~ 237 (239)
+|+++++.--...|.. ..+++|+.
T Consensus 272 ~L~Ls~N~l~~~ip~~-~~l~~L~~ 295 (313)
T 1ogq_A 272 SLNVSFNNLCGEIPQG-GNLQRFDV 295 (313)
T ss_dssp EEECCSSEEEEECCCS-TTGGGSCG
T ss_pred EEECcCCcccccCCCC-ccccccCh
Confidence 8888877543333333 44444443
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.50 E-value=6.5e-14 Score=113.51 Aligned_cols=194 Identities=11% Similarity=-0.003 Sum_probs=106.9
Q ss_pred ccCCccCceEeccCCC-CChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccccceeEEcCCCCCCCCCcchHH
Q 037108 29 TSLRTMCKFVVGNEIG-SGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTC 107 (239)
Q Consensus 29 ~~L~~L~~~~~~~~~~-~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 107 (239)
.++++|++....-... .....++++++|+ .|++.+... .....+..+.++++|+.|+++.+... ..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~-~L~L~~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~---------~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLN-FLYIGGINN---LVGPIPPAIAKLTQLHYLYITHTNVS---------GA 116 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCS-EEEEEEETT---EESCCCGGGGGCTTCSEEEEEEECCE---------EE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCC-eeeCCCCCc---ccccCChhHhcCCCCCEEECcCCeeC---------Cc
Confidence 4677777654432210 3446788888888 898874222 22233455778899999999977532 12
Q ss_pred HhhcCCCCCCcceEEEeccCCC-CccchhhhccCcceeeeec-------------cCC-CceeeC---------CCCCCC
Q 037108 108 VLDLLKPHQSLKKLKINGYGGT-KFAIYTLSITGDSLFSRYA-------------RMG-KWIPHG---------SGKSDE 163 (239)
Q Consensus 108 ~~~~l~~~~~L~~L~l~~~~~~-~~p~~~l~l~~~~~~L~l~-------------~~~-~l~~~~---------~~~~~~ 163 (239)
++..+..+++|+.|+++++... ..|..+..+..-. .+.+. .++ +++.+. .+..++
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV-GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC-EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC-eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 3445566789999999987654 3555442221100 01111 111 221111 012223
Q ss_pred cCCcccEEeeccCccccccccC---CCCcccEEEeccccc--cccccCCCCcccEEEecccCccccccccccCccceEee
Q 037108 164 GLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--LLVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLW 238 (239)
Q Consensus 164 ~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~~ 238 (239)
.++ |++|+++++ .+++..|. .+++|+.|+++++.- ....+..+++|++|++++|.--...|..+..+++|+.+
T Consensus 196 ~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 196 NLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp GCC-CSEEECCSS-EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred CCc-ccEEECcCC-cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence 333 555555544 33333332 456777777766542 11235567888888888876544566666666655544
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.49 E-value=5.2e-14 Score=127.10 Aligned_cols=79 Identities=13% Similarity=0.013 Sum_probs=54.4
Q ss_pred CCCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccc---ccccccCCCCcccEEEecccCccccccccccCc
Q 037108 159 GKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE---QLLVSILSLPTLRKLTVNGCKEVVGRAINLSSS 232 (239)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~---~l~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l 232 (239)
+..++.+++|++|+++++ ++.|.+|. .+++|+.|+++++. .++..++.+++|+.|+++++.--..+|..++++
T Consensus 625 ~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CCSCSSSBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred chhhhccccccEEECcCC-cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 345566788888888866 66677775 56778888887765 344566777888888888776555666666666
Q ss_pred cceEee
Q 037108 233 SSVVLW 238 (239)
Q Consensus 233 ~~L~~~ 238 (239)
++|+.+
T Consensus 704 ~~L~~L 709 (768)
T 3rgz_A 704 TMLTEI 709 (768)
T ss_dssp CCCSEE
T ss_pred CCCCEE
Confidence 665554
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.47 E-value=4.5e-13 Score=114.50 Aligned_cols=84 Identities=20% Similarity=0.142 Sum_probs=44.1
Q ss_pred CCcccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108 2 GNLIKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN 80 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~ 80 (239)
+++++|++|++++| .+..+ |..++++++|++|++....-. ......++++++|+ .|++.... .....+..+.
T Consensus 53 ~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~Ls~n~----i~~~~~~~~~ 125 (477)
T 2id5_A 53 ASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLT-KLDISENK----IVILLDYMFQ 125 (477)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCC-EEECTTSC----CCEECTTTTT
T ss_pred cCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCC-EEECCCCc----cccCChhHcc
Confidence 56778888888887 46665 667788888888876432211 11111234455555 55543221 1111223344
Q ss_pred cccccccceeEE
Q 037108 81 GKRNLKDLLLEW 92 (239)
Q Consensus 81 ~l~~L~~L~l~~ 92 (239)
++++|+.|.++.
T Consensus 126 ~l~~L~~L~l~~ 137 (477)
T 2id5_A 126 DLYNLKSLEVGD 137 (477)
T ss_dssp TCTTCCEEEECC
T ss_pred ccccCCEEECCC
Confidence 455555555553
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.47 E-value=7.4e-14 Score=126.11 Aligned_cols=217 Identities=14% Similarity=0.047 Sum_probs=129.3
Q ss_pred cccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 4 LIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
+.+|++|++++|...+.+|..++++++|++|++..... .+.....++++++|+ .+.+.... .....+..+..++
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL-SGTIPSSLGSLSKLR-DLKLWLNM----LEGEIPQELMYVK 466 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE-ESCCCGGGGGCTTCC-EEECCSSC----CCSCCCGGGGGCT
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc-cCcccHHHhcCCCCC-EEECCCCc----ccCcCCHHHcCCC
Confidence 55677777777743336777788888888877654322 123334566666666 66664432 1222334456677
Q ss_pred ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCC-CccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108 84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGT-KFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD 162 (239)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~ 162 (239)
+|+.|+++.+...+ .++..+..+++|+.|++.++... .+|.|+..+..-. .+.+.++. +... .|..+
T Consensus 467 ~L~~L~L~~N~l~~---------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~L~~N~-l~~~-~p~~l 534 (768)
T 3rgz_A 467 TLETLILDFNDLTG---------EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA-ILKLSNNS-FSGN-IPAEL 534 (768)
T ss_dssp TCCEEECCSSCCCS---------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC-EEECCSSC-CEEE-CCGGG
T ss_pred CceEEEecCCcccC---------cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC-EEECCCCc-ccCc-CCHHH
Confidence 78888877554321 12344555678888888887655 4566653221100 12232221 1111 14456
Q ss_pred CcCCcccEEeeccCccccccccC---------------------------------------------------------
Q 037108 163 EGLADLRELFLVSCSKLQRTLLE--------------------------------------------------------- 185 (239)
Q Consensus 163 ~~~~~L~~L~l~~~~~L~~~~p~--------------------------------------------------------- 185 (239)
+.+++|++|++++| .+.|.+|.
T Consensus 535 ~~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (768)
T 3rgz_A 535 GDCRSLIWLDLNTN-LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613 (768)
T ss_dssp GGCTTCCEEECCSS-EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred cCCCCCCEEECCCC-ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence 67888888888766 33334432
Q ss_pred ----------------CCCcccEEEecccc---ccccccCCCCcccEEEecccCccccccccccCccceEeeC
Q 037108 186 ----------------YLPSLETLVIRKCE---QLLVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLWD 239 (239)
Q Consensus 186 ----------------~l~~L~~L~l~~c~---~l~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~~~ 239 (239)
.+++|+.|+++++. .++..++.+++|+.|+++++.--..+|..+..+++|+..|
T Consensus 614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred ccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 24567788887765 3445677889999999998876667777777777776654
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.47 E-value=3.4e-13 Score=115.26 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=41.0
Q ss_pred CcccEEeeccCcccccccc----CCCCcccEEEeccccc--cc-cccCCCCcccEEEecccCccccccccccCccceEee
Q 037108 166 ADLRELFLVSCSKLQRTLL----EYLPSLETLVIRKCEQ--LL-VSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLW 238 (239)
Q Consensus 166 ~~L~~L~l~~~~~L~~~~p----~~l~~L~~L~l~~c~~--l~-~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~~ 238 (239)
.+|++|+++++ +++ .+| ..+++|++|+++++.- +. ..+..+++|++|++.++.--...+..+..+++|+.+
T Consensus 224 ~~L~~L~l~~n-~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (477)
T 2id5_A 224 LNLTSLSITHC-NLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301 (477)
T ss_dssp CCCSEEEEESS-CCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE
T ss_pred ccccEEECcCC-ccc-ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEE
Confidence 35555555554 343 343 2467777777776541 11 235667788888888775444445555555555544
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.47 E-value=1.7e-13 Score=120.44 Aligned_cols=220 Identities=18% Similarity=0.183 Sum_probs=115.5
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
+++++|++|++++| .++++|.+++++++|++|++...... ......+.++++|+ .+.+.+.... .......+..
T Consensus 275 ~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~l~~n~~~---~~~~~~~~~~ 348 (606)
T 3t6q_A 275 HCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLT-HLSIKGNTKR---LELGTGCLEN 348 (606)
T ss_dssp TTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCS-EEECCSCSSC---CBCCSSTTTT
T ss_pred ccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcC-cCchhhhhccCcCC-EEECCCCCcc---cccchhhhhc
Confidence 56788999999988 58889988999999998876433211 11123455566666 6666443211 0111123556
Q ss_pred ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCc-cchhhhc--------cCcce--e---eee
Q 037108 82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKF-AIYTLSI--------TGDSL--F---SRY 147 (239)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~l~l--------~~~~~--~---L~l 147 (239)
+++|+.|+++.+.... .......+..+++|+.|++.++..... |..+..+ .+..- . -.+
T Consensus 349 l~~L~~L~l~~n~l~~-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 349 LENLRELDLSHDDIET-------SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp CTTCCEEECCSSCCCE-------EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred cCcCCEEECCCCcccc-------ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence 6777777776443211 000122344455666666665543222 1111100 00000 0 001
Q ss_pred ccCCCceeeC---------CCCCCCcCCcccEEeeccCccccc-ccc-----CCCCcccEEEeccccc--c-ccccCCCC
Q 037108 148 ARMGKWIPHG---------SGKSDEGLADLRELFLVSCSKLQR-TLL-----EYLPSLETLVIRKCEQ--L-LVSILSLP 209 (239)
Q Consensus 148 ~~~~~l~~~~---------~~~~~~~~~~L~~L~l~~~~~L~~-~~p-----~~l~~L~~L~l~~c~~--l-~~~~~~l~ 209 (239)
..+++++.+. .+..++.+++|++|+++++. +.+ .++ ..+++|++|++++|.- + +..+..++
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 500 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCccCccChhhhcccc
Confidence 2222332221 12335567777777777663 332 121 1467777777777652 1 23456777
Q ss_pred cccEEEecccCccccccccccCccce
Q 037108 210 TLRKLTVNGCKEVVGRAINLSSSSSV 235 (239)
Q Consensus 210 ~L~~L~i~~c~~l~~~~~~~~~l~~L 235 (239)
+|++|++++|.--...+..+.++++|
T Consensus 501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 501 MMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCCEEECCCCccCcCChhHhCccccc
Confidence 88888888776555556666666655
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.43 E-value=5.6e-13 Score=106.39 Aligned_cols=198 Identities=14% Similarity=0.075 Sum_probs=116.9
Q ss_pred cccCcEEeCCCCCCCcccC-ccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108 4 LIKLHHLNNPSTDSLEEMP-QGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK 82 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 82 (239)
..+|++|+++++ .++.+| ..++++++|++|++....- .......++++++|+ .+++.+..... ...+..+..+
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~-~L~l~~n~~l~---~~~~~~~~~l 104 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLE-QLDLSDNAQLR---SVDPATFHGL 104 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCC-EEECCSCTTCC---CCCTTTTTTC
T ss_pred CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCcc-ceeCHhhcCCccCCC-EEeCCCCCCcc---ccCHHHhcCC
Confidence 467999999999 478887 4589999999998754321 111233466677777 77765443222 1223456677
Q ss_pred cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccch-hhhccCcceeeeeccCCCceeeCCCCC
Q 037108 83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIY-TLSITGDSLFSRYARMGKWIPHGSGKS 161 (239)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~l~l~~~~~~L~l~~~~~l~~~~~~~~ 161 (239)
++|+.|+++.+..... ....+..+++|+.|++.++....++.. +..+..- ..+.+.+. .+..+. +..
T Consensus 105 ~~L~~L~l~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n-~l~~~~-~~~ 172 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQEL---------GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGN-RISSVP-ERA 172 (285)
T ss_dssp TTCCEEECTTSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSS-CCCEEC-TTT
T ss_pred cCCCEEECCCCcCCEE---------CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCC-cccccC-HHH
Confidence 8899988875542211 123455677899999988766555432 2110000 01222221 111111 223
Q ss_pred CCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc--cc-cccCCCCcccEEEecccC
Q 037108 162 DEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--LL-VSILSLPTLRKLTVNGCK 220 (239)
Q Consensus 162 ~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l~-~~~~~l~~L~~L~i~~c~ 220 (239)
++.+++|++|+++++ .+.+..|. .+++|+.|+++++.- +. ..+..+++|++|++++++
T Consensus 173 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred hcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 566888888888876 45534343 467888888887642 22 246678888888888764
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.42 E-value=1.3e-12 Score=110.82 Aligned_cols=36 Identities=17% Similarity=0.041 Sum_probs=19.8
Q ss_pred CCcccCcEEeCCCCCCCcccC-ccCCCCccCCccCce
Q 037108 2 GNLIKLHHLNNPSTDSLEEMP-QGIGKLTSLRTMCKF 37 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP-~~i~~L~~L~~L~~~ 37 (239)
+++++|++|++++|.....+| ..++++++|++|++.
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 456666666666663222443 345666666666553
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.42 E-value=4.5e-13 Score=113.70 Aligned_cols=110 Identities=17% Similarity=0.156 Sum_probs=65.0
Q ss_pred ccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 5 IKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
.+|++|++++|. ++.+ |..++++++|++|++.............++++++|+ .|++.+.. .....+..+.+++
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI-ILKLDYNQ----FLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCC-EEECTTCT----TCEECTTTTTTCT
T ss_pred CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCC-EEeCCCCc----cCccChhhccCcc
Confidence 579999999994 7776 778999999999988654321111223456666666 66664322 2222334556667
Q ss_pred ccccceeEEcCCCCCCCCCcchHHHhhc--CCCCCCcceEEEeccCCC
Q 037108 84 NLKDLLLEWNNSTSNIREPETDTCVLDL--LKPHQSLKKLKINGYGGT 129 (239)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~ 129 (239)
+|+.|+++.+... ...+.. +..+++|+.|++.++...
T Consensus 104 ~L~~L~L~~n~l~---------~~~~~~~~~~~l~~L~~L~L~~n~l~ 142 (455)
T 3v47_A 104 NLEVLTLTQCNLD---------GAVLSGNFFKPLTSLEMLVLRDNNIK 142 (455)
T ss_dssp TCCEEECTTSCCB---------THHHHSSTTTTCTTCCEEECCSSBCC
T ss_pred cCCEEeCCCCCCC---------ccccCcccccCcccCCEEECCCCccC
Confidence 7777777644311 111222 444556666666655443
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.41 E-value=5.2e-13 Score=111.24 Aligned_cols=87 Identities=11% Similarity=0.107 Sum_probs=55.1
Q ss_pred CCCcccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108 1 MGNLIKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL 79 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 79 (239)
++++++|++|++++|. ++.+|+ .++++++|++|++....-. ......++++++|+ .+++.+.. .....+..+
T Consensus 89 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~ 161 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT-TLSMSNNN----LERIEDDTF 161 (390)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEECCSSC----CCBCCTTTT
T ss_pred ccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCc-EEECCCCc----cCccChhhc
Confidence 3578899999999994 777754 4799999999987543321 11111245666677 67765432 122223446
Q ss_pred CcccccccceeEEcC
Q 037108 80 NGKRNLKDLLLEWNN 94 (239)
Q Consensus 80 ~~l~~L~~L~l~~~~ 94 (239)
..+++|+.|+++.+.
T Consensus 162 ~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 162 QATTSLQNLQLSSNR 176 (390)
T ss_dssp SSCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCc
Confidence 677788888887554
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.41 E-value=1.2e-12 Score=107.26 Aligned_cols=73 Identities=21% Similarity=0.134 Sum_probs=42.4
Q ss_pred CCcCCcccEEeeccCccccccccC--CCCcccEEEecccccc---ccccCCCCcccEEEecccCccccccccccCccceE
Q 037108 162 DEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCEQL---LVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVV 236 (239)
Q Consensus 162 ~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~~l---~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~ 236 (239)
+..+++|++|++++| ++. .++. .+++|++|++++|.-- ...+..+++|++|++++|+--...+ +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n-~l~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSN-QIS-DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp GTTCTTCCEEECCSS-CCC-CCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred HhcCCCcCEEEccCC-ccC-CChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 445667777777665 443 3332 5677777777776521 1245677888888888876333323 44444444
Q ss_pred ee
Q 037108 237 LW 238 (239)
Q Consensus 237 ~~ 238 (239)
.+
T Consensus 337 ~L 338 (347)
T 4fmz_A 337 SA 338 (347)
T ss_dssp EE
T ss_pred ee
Confidence 33
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.41 E-value=1.1e-12 Score=104.77 Aligned_cols=209 Identities=14% Similarity=0.108 Sum_probs=126.0
Q ss_pred cEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccccc
Q 037108 8 HHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKD 87 (239)
Q Consensus 8 r~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~ 87 (239)
+.++.++. .++.+|.++ .++|++|++....- .......++++++|+ .+.+.+.. .....+..+..+++|+.
T Consensus 14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n~i-~~~~~~~~~~~~~L~-~L~l~~n~----l~~~~~~~~~~l~~L~~ 84 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVGI--PAASQRIFLHGNRI-SHVPAASFRACRNLT-ILWLHSNV----LARIDAAAFTGLALLEQ 84 (285)
T ss_dssp CEEECCSS-CCSSCCTTC--CTTCSEEECTTSCC-CEECTTTTTTCTTCC-EEECCSSC----CCEECTTTTTTCTTCCE
T ss_pred eEEEcCcC-CcccCCcCC--CCCceEEEeeCCcC-CccCHHHcccCCCCC-EEECCCCc----cceeCHhhcCCccCCCE
Confidence 57888887 589999755 56888887643221 111223466677777 77775432 22233456778899999
Q ss_pred ceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc-chhhhccCcceeeeeccCCCceeeCCCCCCCcCC
Q 037108 88 LLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA-IYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLA 166 (239)
Q Consensus 88 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~ 166 (239)
|+++.+..... -....+..+++|+.|++.++.....+ ..+..+..- ..+.+.+. .+... .+..++.++
T Consensus 85 L~l~~n~~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n-~l~~~-~~~~~~~l~ 153 (285)
T 1ozn_A 85 LDLSDNAQLRS--------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYLQDN-ALQAL-PDDTFRDLG 153 (285)
T ss_dssp EECCSCTTCCC--------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSS-CCCCC-CTTTTTTCT
T ss_pred EeCCCCCCccc--------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC-CEEECCCC-ccccc-CHhHhccCC
Confidence 99986641111 01334556789999999988765543 322111000 01222211 11111 023367789
Q ss_pred cccEEeeccCccccccccC----CCCcccEEEeccccc--c-ccccCCCCcccEEEecccCccccccccccCccceEee
Q 037108 167 DLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCEQ--L-LVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLW 238 (239)
Q Consensus 167 ~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~~ 238 (239)
+|++|+++++ +++ .+|. .+++|++|+++++.- + +..+..+++|++|+++++.--...+..+..+++|+.+
T Consensus 154 ~L~~L~l~~n-~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 154 NLTHLFLHGN-RIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp TCCEEECCSS-CCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred CccEEECCCC-ccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 9999999987 665 4443 578999999998762 2 3467788999999999985444333445555555543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.41 E-value=1.7e-13 Score=121.32 Aligned_cols=62 Identities=8% Similarity=0.024 Sum_probs=41.2
Q ss_pred CCCCCcCCc-ccEEeeccCccccccccCC-----CCcccEEEeccccc---cccccC-------CCCcccEEEecccCcc
Q 037108 159 GKSDEGLAD-LRELFLVSCSKLQRTLLEY-----LPSLETLVIRKCEQ---LLVSIL-------SLPTLRKLTVNGCKEV 222 (239)
Q Consensus 159 ~~~~~~~~~-L~~L~l~~~~~L~~~~p~~-----l~~L~~L~l~~c~~---l~~~~~-------~l~~L~~L~i~~c~~l 222 (239)
|..++.+++ |++|+++++ .++ .+|.. +++|++|+++++.- .+..++ .+++|++|++++|.--
T Consensus 369 p~~l~~l~~~L~~L~Ls~N-~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~ 446 (636)
T 4eco_A 369 PANFCGFTEQVENLSFAHN-KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446 (636)
T ss_dssp CTTSEEECTTCCEEECCSS-CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC
T ss_pred cHhhhhhcccCcEEEccCC-cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC
Confidence 455667777 888888876 465 66652 34788888877653 223344 5668888888886533
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.40 E-value=7.5e-13 Score=107.83 Aligned_cols=102 Identities=15% Similarity=0.075 Sum_probs=58.5
Q ss_pred CCCCCCcceEEEeccCCCCccchhh-hccCcceeeeeccCCCceeeCCCCCCCcCCcccEEeeccCccccccccC---CC
Q 037108 112 LKPHQSLKKLKINGYGGTKFAIYTL-SITGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE---YL 187 (239)
Q Consensus 112 l~~~~~L~~L~l~~~~~~~~p~~~l-~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l 187 (239)
+..+++|+.|++.++....+|..+. .++ .+.+.+. .+.... +..++.+++|++|+++++ .+.+..+. .+
T Consensus 167 ~~~l~~L~~L~l~~n~l~~l~~~~~~~L~----~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l 239 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNITTIPQGLPPSLT----ELHLDGN-KITKVD-AASLKGLNNLAKLGLSFN-SISAVDNGSLANT 239 (330)
T ss_dssp GGGCTTCCEEECCSSCCCSCCSSCCTTCS----EEECTTS-CCCEEC-TGGGTTCTTCCEEECCSS-CCCEECTTTGGGS
T ss_pred ccCCCCcCEEECCCCccccCCccccccCC----EEECCCC-cCCccC-HHHhcCCCCCCEEECCCC-cCceeChhhccCC
Confidence 3345567777776665554543320 000 1222221 111111 234566788888888876 45422221 56
Q ss_pred CcccEEEecccc--ccccccCCCCcccEEEecccC
Q 037108 188 PSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCK 220 (239)
Q Consensus 188 ~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~ 220 (239)
++|++|+++++. .++..+..+++|++|++++|+
T Consensus 240 ~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 240 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp TTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred CCCCEEECCCCcCccCChhhccCCCcCEEECCCCc
Confidence 888888888775 344466778888999888875
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.40 E-value=3e-13 Score=119.67 Aligned_cols=204 Identities=10% Similarity=0.066 Sum_probs=127.7
Q ss_pred CCCcccCcEEeCCCCCCCcc------------------cCccCC--CCccCCccCceEeccCCCCChhhhcccccccceE
Q 037108 1 MGNLIKLHHLNNPSTDSLEE------------------MPQGIG--KLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTV 60 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~------------------lP~~i~--~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L 60 (239)
++++++|++|++++|. ++. +|++++ ++++|++|++..+.. .+..+..++++++|+ .|
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~-~L 278 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-LTKLPTFLKALPEMQ-LI 278 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT-CSSCCTTTTTCSSCC-EE
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC-CccChHHHhcCCCCC-EE
Confidence 4678999999999995 677 999999 999999998865542 233446677888888 77
Q ss_pred EEEeccCCCChhH-HHHhccCc------ccccccceeEEcCCCCCCCCCcchHHHhh--cCCCCCCcceEEEeccCCC-C
Q 037108 61 CISRLENVKEISA-AKEAQLNG------KRNLKDLLLEWNNSTSNIREPETDTCVLD--LLKPHQSLKKLKINGYGGT-K 130 (239)
Q Consensus 61 ~~~~~~~~~~~~~-~~~~~l~~------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~-~ 130 (239)
++..... ... ..+..+.. +++|+.|+++.+... .++. .+..+++|+.|++.++... .
T Consensus 279 ~Ls~n~~---l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~----------~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 279 NVACNRG---ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK----------TFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp ECTTCTT---SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS----------SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred ECcCCCC---CccccchHHHHhhhccccCCCCCEEECCCCcCC----------ccCchhhhccCCCCCEEeCcCCcCccc
Confidence 7654331 222 33444444 388999998865422 2333 4556678888888877655 4
Q ss_pred ccchhh--------hccCcce--e-eeeccCCC-ceeeC--------CCCCCCc--CCcccEEeeccCccccccccCCCC
Q 037108 131 FAIYTL--------SITGDSL--F-SRYARMGK-WIPHG--------SGKSDEG--LADLRELFLVSCSKLQRTLLEYLP 188 (239)
Q Consensus 131 ~p~~~l--------~l~~~~~--~-L~l~~~~~-l~~~~--------~~~~~~~--~~~L~~L~l~~~~~L~~~~p~~l~ 188 (239)
+| .+. .+.+..- + -.+..+++ ++.+. .|..++. +++|++|+++++ .+.+.+|..++
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~ 423 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN-EIGSVDGKNFD 423 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSS-CTTTTTTCSSC
T ss_pred hh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCC-cCCCcchhhhc
Confidence 55 221 1111100 0 01122223 33221 1333333 448999999987 56666665444
Q ss_pred ----------cccEEEeccccc--ccc-ccCCCCcccEEEecccCcc
Q 037108 189 ----------SLETLVIRKCEQ--LLV-SILSLPTLRKLTVNGCKEV 222 (239)
Q Consensus 189 ----------~L~~L~l~~c~~--l~~-~~~~l~~L~~L~i~~c~~l 222 (239)
+|++|+++++.- ++. .+..+++|++|++++|.--
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 899999988752 322 2345899999999997644
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.39 E-value=7.7e-13 Score=114.82 Aligned_cols=64 Identities=23% Similarity=0.217 Sum_probs=31.8
Q ss_pred CCcccEEeeccCcccccccc------CCCCcccEEEeccccc--cc---cccCCCCcccEEEecccCcccccccccc
Q 037108 165 LADLRELFLVSCSKLQRTLL------EYLPSLETLVIRKCEQ--LL---VSILSLPTLRKLTVNGCKEVVGRAINLS 230 (239)
Q Consensus 165 ~~~L~~L~l~~~~~L~~~~p------~~l~~L~~L~l~~c~~--l~---~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 230 (239)
+++|++|+++++ ++.+.+| ..+++|++|+++++.- +. ..+..+++|++|++++| ++...|..+.
T Consensus 333 l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~ 407 (549)
T 2z81_A 333 LKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQ 407 (549)
T ss_dssp CTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCC
T ss_pred CccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChhhc
Confidence 556666666655 3332322 1456666666665542 11 12455666666666665 3333443333
No 20
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.38 E-value=2e-12 Score=109.51 Aligned_cols=82 Identities=15% Similarity=0.104 Sum_probs=44.8
Q ss_pred ccCcEEeCCCCCCCcccC-ccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 5 IKLHHLNNPSTDSLEEMP-QGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
.++++|++++| .+..+| ..++++++|++|++....- .......+.++++|+ .|++.+.. ........+..++
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLN-TLELFDNR----LTTIPNGAFVYLS 136 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCC-CEECGGGGTTCSSCC-EEECCSSC----CSSCCTTTSCSCS
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcC-CccChhhccCCccCC-EEECCCCc----CCeeCHhHhhccc
Confidence 45777777777 366665 5677777777776643221 111223455566666 66654321 1112223455666
Q ss_pred ccccceeEEc
Q 037108 84 NLKDLLLEWN 93 (239)
Q Consensus 84 ~L~~L~l~~~ 93 (239)
+|+.|+++.+
T Consensus 137 ~L~~L~L~~N 146 (440)
T 3zyj_A 137 KLKELWLRNN 146 (440)
T ss_dssp SCCEEECCSC
T ss_pred cCceeeCCCC
Confidence 7777776644
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.38 E-value=1.9e-12 Score=110.05 Aligned_cols=194 Identities=13% Similarity=0.050 Sum_probs=101.7
Q ss_pred ccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 5 IKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
.++++|++++|. ++.+ |..++++++|++|++....- .......+.++++|+ .|++.+.. ........+..++
T Consensus 75 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLN-TLELFDNW----LTVIPSGAFEYLS 147 (452)
T ss_dssp TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCC-EEECCSSC----CSBCCTTTSSSCT
T ss_pred CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCcc-CCcChhhccCcccCC-EEECCCCc----CCccChhhhcccC
Confidence 468889998884 6666 56688888888887754321 111223455666666 66664432 1222233466677
Q ss_pred ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC-ccc-hhhhccCcceeeeeccCCCceeeCCCCC
Q 037108 84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK-FAI-YTLSITGDSLFSRYARMGKWIPHGSGKS 161 (239)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~-~~l~l~~~~~~L~l~~~~~l~~~~~~~~ 161 (239)
+|+.|+++.+..... ....+..+++|+.|++.+++... ++. .+..+..- ..|.+.+. ++. ..+.
T Consensus 148 ~L~~L~L~~N~l~~~---------~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n-~l~---~~~~ 213 (452)
T 3zyi_A 148 KLRELWLRNNPIESI---------PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL-KYLNLGMC-NIK---DMPN 213 (452)
T ss_dssp TCCEEECCSCCCCEE---------CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC-CEEECTTS-CCS---SCCC
T ss_pred CCCEEECCCCCccee---------CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC-CEEECCCC-ccc---cccc
Confidence 888888875532110 01234456677777777643322 221 11000000 01222111 011 1123
Q ss_pred CCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc--c-ccccCCCCcccEEEecccC
Q 037108 162 DEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--L-LVSILSLPTLRKLTVNGCK 220 (239)
Q Consensus 162 ~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~L~i~~c~ 220 (239)
+..+++|++|+++++ .+++..|. .+++|++|++.++.- + ...+..+++|++|+++++.
T Consensus 214 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 214 LTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp CTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 455677777777765 44423232 466777777766542 1 1245566777777777663
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.37 E-value=1e-12 Score=115.51 Aligned_cols=227 Identities=11% Similarity=0.066 Sum_probs=110.5
Q ss_pred CCCcccCcEEeCCCCCCCcccCcc-CCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108 1 MGNLIKLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL 79 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 79 (239)
++++.+|++|++++|. ++.+|+. ++++++|++|++..+.-. ......++++++|+ .|.+.+.. .....+..+
T Consensus 95 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~-~L~Ls~N~----l~~~~~~~~ 167 (597)
T 3oja_B 95 FAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT-TLSMSNNN----LERIEDDTF 167 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEECCSSC----CCBCCTTTT
T ss_pred hcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCC-EEEeeCCc----CCCCChhhh
Confidence 4678899999999984 7777654 689999999987544321 11112246667777 67765432 222233456
Q ss_pred CcccccccceeEEcCCCCCCCCCcc-------hHHHhhcCCCCCCcceEEEeccCCCCccchh------hhccCcce--e
Q 037108 80 NGKRNLKDLLLEWNNSTSNIREPET-------DTCVLDLLKPHQSLKKLKINGYGGTKFAIYT------LSITGDSL--F 144 (239)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~------l~l~~~~~--~ 144 (239)
..+++|+.|+++.+........... ....+..+..+.+|+.|++.++....+|..+ +.+.+..- .
T Consensus 168 ~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~ 247 (597)
T 3oja_B 168 QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT 247 (597)
T ss_dssp TTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC
T ss_pred hcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC
Confidence 6777888888775542211000000 0000011122234445554444332222111 00000000 0
Q ss_pred eeeccCCCceeeC---------CCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--ccccccCCCCc
Q 037108 145 SRYARMGKWIPHG---------SGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLVSILSLPT 210 (239)
Q Consensus 145 L~l~~~~~l~~~~---------~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~~~~~l~~ 210 (239)
-.+..+++|..+. .+..++.+++|++|+++++ .+. .+|. .+|+|+.|++++|. .++..+..+++
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~ 325 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 325 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCC-CCCcccccCCCCcEEECCCCCCCccCcccccCCC
Confidence 0011122222211 0234455666777777654 454 3442 36677777776654 23334456677
Q ss_pred ccEEEecccCccccccccccCccceE
Q 037108 211 LRKLTVNGCKEVVGRAINLSSSSSVV 236 (239)
Q Consensus 211 L~~L~i~~c~~l~~~~~~~~~l~~L~ 236 (239)
|+.|++++|.-.......+.+++.|.
T Consensus 326 L~~L~L~~N~l~~~~~~~~~~L~~L~ 351 (597)
T 3oja_B 326 LENLYLDHNSIVTLKLSTHHTLKNLT 351 (597)
T ss_dssp CSEEECCSSCCCCCCCCTTCCCSEEE
T ss_pred CCEEECCCCCCCCcChhhcCCCCEEE
Confidence 77777777654333333444444444
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.37 E-value=3.5e-12 Score=104.47 Aligned_cols=206 Identities=15% Similarity=0.129 Sum_probs=115.9
Q ss_pred CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108 1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN 80 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~ 80 (239)
++++++|++|++++| .+..+|. ++++++|++|++..+.. ...+..+.++++|+ .+.+.+..-.. .. .+.
T Consensus 106 ~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~--~~~~~~~~~l~~L~-~L~l~~~~~~~-~~-----~~~ 174 (347)
T 4fmz_A 106 LQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHN--LSDLSPLSNMTGLN-YLTVTESKVKD-VT-----PIA 174 (347)
T ss_dssp GTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTT--CCCCGGGTTCTTCC-EEECCSSCCCC-CG-----GGG
T ss_pred HcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCC--cccccchhhCCCCc-EEEecCCCcCC-ch-----hhc
Confidence 357889999999999 5888887 88999999998754432 22344567777777 77765433211 11 155
Q ss_pred cccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCC
Q 037108 81 GKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGK 160 (239)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~ 160 (239)
.+++|+.|+++.+.... ...+..+++|+.+.+.++.....+. +.....- ..+.+.++ .+.. .+
T Consensus 175 ~l~~L~~L~l~~n~l~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L-~~L~l~~n-~l~~---~~ 237 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIED-----------ISPLASLTSLHYFTAYVNQITDITP-VANMTRL-NSLKIGNN-KITD---LS 237 (347)
T ss_dssp GCTTCSEEECTTSCCCC-----------CGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTC-CEEECCSS-CCCC---CG
T ss_pred cCCCCCEEEccCCcccc-----------cccccCCCccceeecccCCCCCCch-hhcCCcC-CEEEccCC-ccCC---Cc
Confidence 66778888877553211 0113345677777777665443332 1000000 01222211 0011 11
Q ss_pred CCCcCCcccEEeeccCcccccccc--CCCCcccEEEecccc--ccccccCCCCcccEEEecccCccccccccccCccceE
Q 037108 161 SDEGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVV 236 (239)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~L~~~~p--~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~ 236 (239)
....+++|++|++++| .+. .++ ..+++|++|++++|. .+ ..+..+++|++|++++|.--...+..+..+++|+
T Consensus 238 ~~~~l~~L~~L~l~~n-~l~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 238 PLANLSQLTWLEIGTN-QIS-DINAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GGTTCTTCCEEECCSS-CCC-CCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred chhcCCCCCEEECCCC-ccC-CChhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 2456777788877766 444 333 256777777777764 22 2456677778888877755444444444444444
Q ss_pred e
Q 037108 237 L 237 (239)
Q Consensus 237 ~ 237 (239)
.
T Consensus 315 ~ 315 (347)
T 4fmz_A 315 T 315 (347)
T ss_dssp E
T ss_pred E
Confidence 3
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.37 E-value=2.9e-12 Score=112.53 Aligned_cols=230 Identities=15% Similarity=0.044 Sum_probs=120.4
Q ss_pred CCCcccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108 1 MGNLIKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL 79 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 79 (239)
++++++|++|++++|. ++.+ |..++++++|++|++.............++++++|+ .+++.+..- . .....+..+
T Consensus 297 l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~l-~-~~~~~~~~~ 372 (606)
T 3t6q_A 297 LVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR-ELDLSHDDI-E-TSDCCNLQL 372 (606)
T ss_dssp CCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC-EEECCSSCC-C-EEEESTTTT
T ss_pred hcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC-EEECCCCcc-c-cccCcchhc
Confidence 4578899999999994 6666 567889999999877554322112222355666666 666543221 0 000012345
Q ss_pred CcccccccceeEEcCCCCCCCCC----------------cchHHHhhcCCCCCCcceEEEeccCCCCc-cchhhhccCcc
Q 037108 80 NGKRNLKDLLLEWNNSTSNIREP----------------ETDTCVLDLLKPHQSLKKLKINGYGGTKF-AIYTLSITGDS 142 (239)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~----------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~l~l~~~~ 142 (239)
..+++|+.|+++.+......... .........+..+++|+.|++.++..... |.++..+..-
T Consensus 373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L- 451 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL- 451 (606)
T ss_dssp TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-
T ss_pred ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC-
Confidence 56667777776644311000000 00000001123334555555555433222 2221100000
Q ss_pred eeeeeccCCCce-eeCCCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc---cccccCCCCcccEEE
Q 037108 143 LFSRYARMGKWI-PHGSGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ---LLVSILSLPTLRKLT 215 (239)
Q Consensus 143 ~~L~l~~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~ 215 (239)
..+.+.+..--. .+..+..++.+++|++|++++| ++++..|. .+++|++|+++++.- .+..+..+++| +|+
T Consensus 452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred CEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 012222211000 0111234667899999999988 56544443 578999999998763 23467788999 999
Q ss_pred ecccCccccccccccCccceEe
Q 037108 216 VNGCKEVVGRAINLSSSSSVVL 237 (239)
Q Consensus 216 i~~c~~l~~~~~~~~~l~~L~~ 237 (239)
+++|.--...+..+..+++|+.
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRT 551 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSE
T ss_pred CcCCcccccCHhhcccCCCCCE
Confidence 9998655555554444444443
No 25
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.37 E-value=8.8e-13 Score=106.73 Aligned_cols=199 Identities=16% Similarity=0.060 Sum_probs=111.6
Q ss_pred CcccCcEEeCCCCCCCcccCccC--CCCccCCccCceEeccCCCCChhhhccc-----ccccceEEEEeccCCCChhHHH
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGI--GKLTSLRTMCKFVVGNEIGSGLRQLKSL-----IHLQGTVCISRLENVKEISAAK 75 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i--~~L~~L~~L~~~~~~~~~~~~i~~L~~L-----~~L~~~L~~~~~~~~~~~~~~~ 75 (239)
++.+|++|++++|...+.+|..+ +++++|++|++....-... ...++.+ ++|+ .|++.+.. .....
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~-~L~L~~N~----l~~~~ 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLK-VLSIAQAH----SLNFS 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCC-EEEEESCS----CCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCc-EEEeeCCC----Cccch
Confidence 57899999999995334789887 9999999998865443221 2344444 6777 78876543 22233
Q ss_pred HhccCcccccccceeEEcCCCCCCCCCcchHHHhhcC--CCCCCcceEEEeccCCCCccchhhhcc-Ccce--eeeeccC
Q 037108 76 EAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLL--KPHQSLKKLKINGYGGTKFAIYTLSIT-GDSL--FSRYARM 150 (239)
Q Consensus 76 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~p~~~l~l~-~~~~--~L~l~~~ 150 (239)
+..+.++++|+.|+++.+.. ......+..+ ..+++|+.|++.++....++.....+. +... .|.+.+.
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l-------~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPE-------LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTT-------CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred HHHhccCCCCCEEECCCCCc-------CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 35677888999999985531 1122334444 667899999999887654332110000 0000 0111111
Q ss_pred CCceeeCCCCCCCcCCcccEEeeccCccccccccCCC-CcccEEEecccc--ccccccCCCCcccEEEeccc
Q 037108 151 GKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLEYL-PSLETLVIRKCE--QLLVSILSLPTLRKLTVNGC 219 (239)
Q Consensus 151 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~~l-~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c 219 (239)
.+...........+++|++|+++++ +++ .+|..+ ++|++|+++++. .++ .+..+++|++|+++++
T Consensus 239 -~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~-~ip~~~~~~L~~L~Ls~N~l~~~p-~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 239 -SLRDAAGAPSCDWPSQLNSLNLSFT-GLK-QVPKGLPAKLSVLDLSYNRLDRNP-SPDELPQVGNLSLKGN 306 (312)
T ss_dssp -CCCSSCCCSCCCCCTTCCEEECTTS-CCS-SCCSSCCSEEEEEECCSSCCCSCC-CTTTSCEEEEEECTTC
T ss_pred -cCCcccchhhhhhcCCCCEEECCCC-ccC-hhhhhccCCceEEECCCCCCCCCh-hHhhCCCCCEEeccCC
Confidence 0111000012234566777777655 454 555433 466777666543 222 2455666666666654
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.36 E-value=1.2e-12 Score=107.72 Aligned_cols=114 Identities=13% Similarity=0.046 Sum_probs=66.8
Q ss_pred CCCcccCcEEeCCCCCCCcccC-ccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHH-hc
Q 037108 1 MGNLIKLHHLNNPSTDSLEEMP-QGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKE-AQ 78 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~-~~ 78 (239)
++++++|++|++++| .++.++ ..++++++|++|++....-. ......++++++|+ .+++.+.. ...... ..
T Consensus 72 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~-~L~L~~n~----l~~l~~~~~ 144 (353)
T 2z80_A 72 LQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLT-FLNLLGNP----YKTLGETSL 144 (353)
T ss_dssp TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCS-EEECTTCC----CSSSCSSCS
T ss_pred hccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCC-EEECCCCC----CcccCchhh
Confidence 357888999999988 477765 56888999998877543221 11222366677777 66664322 111111 24
Q ss_pred cCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCC
Q 037108 79 LNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGT 129 (239)
Q Consensus 79 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 129 (239)
+..+++|+.|+++.+..... .....+..+++|+.|++.++...
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~--------~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTK--------IQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCE--------ECTTTTTTCCEEEEEEEEETTCC
T ss_pred hccCCCCcEEECCCCccccc--------cCHHHccCCCCCCEEECCCCCcC
Confidence 56677888888876531110 01223445567777777766543
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.36 E-value=8.9e-13 Score=106.23 Aligned_cols=197 Identities=17% Similarity=0.115 Sum_probs=107.7
Q ss_pred CCcccCcEEeCCCCCCCccc---CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHH-Hh
Q 037108 2 GNLIKLHHLNNPSTDSLEEM---PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAK-EA 77 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~l---P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~-~~ 77 (239)
+++++|++|++++| .++.+ |..+.++++|++|++...... .....+..+++|+ .+.+.+.. ..... ..
T Consensus 49 ~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~--~l~~~~~~l~~L~-~L~l~~n~----l~~~~~~~ 120 (306)
T 2z66_A 49 DKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLE-HLDFQHSN----LKQMSEFS 120 (306)
T ss_dssp TTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEE--EEEEEEETCTTCC-EEECTTSE----EESSTTTT
T ss_pred hccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccc--cChhhcCCCCCCC-EEECCCCc----ccccccch
Confidence 57788999999888 46655 667778888888877433211 1112355566666 66553321 11111 13
Q ss_pred ccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC--ccchhhhccCcceeeeeccCCCcee
Q 037108 78 QLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK--FAIYTLSITGDSLFSRYARMGKWIP 155 (239)
Q Consensus 78 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~~l~l~~~~~~L~l~~~~~l~~ 155 (239)
.+..+++|+.|+++.+... ......+..+++|+.|++.++.... .|.++..+..-. .+.+.+. .+..
T Consensus 121 ~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~Ls~n-~l~~ 189 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTR---------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQC-QLEQ 189 (306)
T ss_dssp TTTTCTTCCEEECTTSCCE---------ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-EEECTTS-CCCE
T ss_pred hhhhccCCCEEECCCCcCC---------ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC-EEECCCC-CcCC
Confidence 4566778888887744321 1112334556788888887764332 333221110000 1222211 1111
Q ss_pred eCCCCCCCcCCcccEEeeccCcccccccc----CCCCcccEEEecccccc---ccccCCCC-cccEEEecccC
Q 037108 156 HGSGKSDEGLADLRELFLVSCSKLQRTLL----EYLPSLETLVIRKCEQL---LVSILSLP-TLRKLTVNGCK 220 (239)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~p----~~l~~L~~L~l~~c~~l---~~~~~~l~-~L~~L~i~~c~ 220 (239)
.. +..++.+++|++|+++++ .++ .++ ..+++|+.|+++++.-- +..+..++ +|++|++++++
T Consensus 190 ~~-~~~~~~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 190 LS-PTAFNSLSSLQVLNMSHN-NFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EC-TTTTTTCTTCCEEECTTS-CCS-BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cC-HHHhcCCCCCCEEECCCC-ccC-ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 11 344566788888888876 454 332 24678888888877532 12455664 78888888754
No 28
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=1.1e-13 Score=112.80 Aligned_cols=202 Identities=16% Similarity=0.117 Sum_probs=105.2
Q ss_pred ccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccc
Q 037108 5 IKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRN 84 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~ 84 (239)
.++++|+++++ .+...+..+.++++|++|++..+..........++++++|+ .|++.+.. ..+..+..+..+++
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~-~L~L~~~~----l~~~~~~~l~~~~~ 143 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ-NLSLEGLR----LSDPIVNTLAKNSN 143 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS-EEECTTCB----CCHHHHHHHTTCTT
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC-EEeCcCcc----cCHHHHHHHhcCCC
Confidence 56777777777 36666666777777777766433211001122355666666 66654332 22333444556677
Q ss_pred cccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEecc-CCCC--ccchhhhccCcceeeeeccCC-CceeeCCCC
Q 037108 85 LKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGY-GGTK--FAIYTLSITGDSLFSRYARMG-KWIPHGSGK 160 (239)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~--~p~~~l~l~~~~~~L~l~~~~-~l~~~~~~~ 160 (239)
|+.|+++.+.. .....+...+...++|+.|++.++ .... ++..+..+...-..|.+.++. .+..-..+.
T Consensus 144 L~~L~L~~~~~-------l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 144 LVRLNLSGCSG-------FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp CSEEECTTCBS-------CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred CCEEECCCCCC-------CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 77777764421 111223333344567777777766 3221 222221110000012222221 110000011
Q ss_pred CCCcCCcccEEeeccCcccccccc---CCCCcccEEEecccccccc----ccCCCCcccEEEeccc
Q 037108 161 SDEGLADLRELFLVSCSKLQRTLL---EYLPSLETLVIRKCEQLLV----SILSLPTLRKLTVNGC 219 (239)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~L~~~~p---~~l~~L~~L~l~~c~~l~~----~~~~l~~L~~L~i~~c 219 (239)
..+.+++|++|++++|..+++..+ ..+++|++|++++|..+.. .+..+++|++|++.+|
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 223578888888888764543322 1568888888888865432 3567888888888888
No 29
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.34 E-value=5.9e-12 Score=97.89 Aligned_cols=188 Identities=15% Similarity=0.076 Sum_probs=108.1
Q ss_pred cCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccc
Q 037108 6 KLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRN 84 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~ 84 (239)
+|++|+++++ .++.+|. .++++++|++|++.............+.++++|+ .+++.+...+. ......+.++++
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~-~L~l~~~n~l~---~i~~~~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT-HIEIRNTRNLT---YIDPDALKELPL 106 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCC-EEEEEEETTCC---EECTTSEECCTT
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCc-EEECCCCCCee---EcCHHHhCCCCC
Confidence 6889999888 4788876 6888889998877543211111222456666777 77776522222 122234566778
Q ss_pred cccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcc---eEEEecc-CCCCccchhhhccCcceeeeeccCCCceeeCCCC
Q 037108 85 LKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLK---KLKINGY-GGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGK 160 (239)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~ 160 (239)
|+.|+++.+.... ++ .+...++|+ .|++.++ ....+|. .
T Consensus 107 L~~L~l~~n~l~~----------lp-~~~~l~~L~~L~~L~l~~N~~l~~i~~--------------------------~ 149 (239)
T 2xwt_C 107 LKFLGIFNTGLKM----------FP-DLTKVYSTDIFFILEITDNPYMTSIPV--------------------------N 149 (239)
T ss_dssp CCEEEEEEECCCS----------CC-CCTTCCBCCSEEEEEEESCTTCCEECT--------------------------T
T ss_pred CCEEeCCCCCCcc----------cc-ccccccccccccEEECCCCcchhhcCc--------------------------c
Confidence 8888888765321 11 133344555 8888776 4333332 2
Q ss_pred CCCcCCccc-EEeeccCccccccccC---CCCcccEEEecccccccc----ccCCC-CcccEEEecccCccccccccccC
Q 037108 161 SDEGLADLR-ELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQLLV----SILSL-PTLRKLTVNGCKEVVGRAINLSS 231 (239)
Q Consensus 161 ~~~~~~~L~-~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~l~~----~~~~l-~~L~~L~i~~c~~l~~~~~~~~~ 231 (239)
.++.+++|+ +|+++++ +++ .+|. ..++|++|++.+++.++. .+..+ ++|++|++++++--...+..+.+
T Consensus 150 ~~~~l~~L~~~L~l~~n-~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~ 227 (239)
T 2xwt_C 150 AFQGLCNETLTLKLYNN-GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227 (239)
T ss_dssp TTTTTBSSEEEEECCSC-CCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTT
T ss_pred cccchhcceeEEEcCCC-CCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhcc
Confidence 234566777 7777655 454 5543 225677777776653322 34556 77777777764322222334556
Q ss_pred ccceEe
Q 037108 232 SSSVVL 237 (239)
Q Consensus 232 l~~L~~ 237 (239)
++.|++
T Consensus 228 L~~L~l 233 (239)
T 2xwt_C 228 LKELIA 233 (239)
T ss_dssp CSEEEC
T ss_pred Cceeec
Confidence 666654
No 30
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.34 E-value=4.8e-12 Score=107.13 Aligned_cols=76 Identities=14% Similarity=0.013 Sum_probs=43.7
Q ss_pred CCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc--c-ccccCCCCcccEEEecccCccccccccccCccce
Q 037108 162 DEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--L-LVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSV 235 (239)
Q Consensus 162 ~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L 235 (239)
+..+++|++|+++++ ++++..|. .+++|++|++.++.- + ...+..+++|++|+++++.--...+..+..+++|
T Consensus 203 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 203 LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred cCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 345667777777765 45423232 467777777776542 1 1245677888888888864333333344445555
Q ss_pred Eee
Q 037108 236 VLW 238 (239)
Q Consensus 236 ~~~ 238 (239)
+.+
T Consensus 282 ~~L 284 (440)
T 3zyj_A 282 ERI 284 (440)
T ss_dssp CEE
T ss_pred CEE
Confidence 443
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.33 E-value=4.6e-12 Score=105.49 Aligned_cols=215 Identities=13% Similarity=0.085 Sum_probs=109.5
Q ss_pred CcccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
++++|++|++++| .+..+|. .++++++|++|++....- .......++++++|+ .|++.+.. ........+.+
T Consensus 67 ~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~L~~n~----l~~l~~~~~~~ 139 (390)
T 3o6n_A 67 SFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLT-VLVLERND----LSSLPRGIFHN 139 (390)
T ss_dssp HCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTT
T ss_pred ccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCC-CcCCHHHhcCCCCCC-EEECCCCc----cCcCCHHHhcC
Confidence 4566777777777 3666653 667777777776643321 111223345556666 56654322 11111222456
Q ss_pred ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc-chhhhcc-----CcceeeeeccCCCcee
Q 037108 82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA-IYTLSIT-----GDSLFSRYARMGKWIP 155 (239)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~l~l~-----~~~~~L~l~~~~~l~~ 155 (239)
+++|+.|+++.+..... ....+..+++|+.|++.++.....+ ..+..+. +.. +-.+...++++.
T Consensus 140 l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~L~~ 209 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERI---------EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL-LSTLAIPIAVEE 209 (390)
T ss_dssp CTTCCEEECCSSCCCBC---------CTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSC-CSEEECCSSCSE
T ss_pred CCCCcEEECCCCccCcc---------ChhhccCCCCCCEEECCCCcCCccccccccccceeeccccc-ccccCCCCcceE
Confidence 67777777765432110 1223445667777777776544332 1111110 000 000011111111
Q ss_pred eCC------CCCCCcCCcccEEeeccCcccccccc--CCCCcccEEEeccccc---cccccCCCCcccEEEecccCcccc
Q 037108 156 HGS------GKSDEGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCEQ---LLVSILSLPTLRKLTVNGCKEVVG 224 (239)
Q Consensus 156 ~~~------~~~~~~~~~L~~L~l~~~~~L~~~~p--~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~i~~c~~l~~ 224 (239)
+.. ..+...+++|++|+++++ .++ ..+ ..+++|++|+++++.- .+..+..+++|++|++++|. +..
T Consensus 210 L~l~~n~l~~~~~~~~~~L~~L~l~~n-~l~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~ 286 (390)
T 3o6n_A 210 LDASHNSINVVRGPVNVELTILKLQHN-NLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVA 286 (390)
T ss_dssp EECCSSCCCEEECCCCSSCCEEECCSS-CCC-CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCE
T ss_pred EECCCCeeeeccccccccccEEECCCC-CCc-ccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-Ccc
Confidence 110 001123567888888876 444 333 2578899999988752 12456788999999999864 444
Q ss_pred ccccccCccceEe
Q 037108 225 RAINLSSSSSVVL 237 (239)
Q Consensus 225 ~~~~~~~l~~L~~ 237 (239)
.+.....+++|+.
T Consensus 287 ~~~~~~~l~~L~~ 299 (390)
T 3o6n_A 287 LNLYGQPIPTLKV 299 (390)
T ss_dssp EECSSSCCTTCCE
T ss_pred cCcccCCCCCCCE
Confidence 4444444444444
No 32
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.33 E-value=3.9e-13 Score=109.65 Aligned_cols=198 Identities=17% Similarity=0.174 Sum_probs=122.4
Q ss_pred cCcEEeCCCCCCCcccCccCCCC--ccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhH-HHHhccCcc
Q 037108 6 KLHHLNNPSTDSLEEMPQGIGKL--TSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISA-AKEAQLNGK 82 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~i~~L--~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~-~~~~~l~~l 82 (239)
.++.++++++. +. |..++++ +++++|++...... ..+..+.++++|+ .+++.+.. ... ..+..+..+
T Consensus 48 ~~~~l~l~~~~-~~--~~~~~~~~~~~l~~L~l~~n~l~--~~~~~~~~~~~L~-~L~L~~~~----l~~~~~~~~~~~~ 117 (336)
T 2ast_B 48 LWQTLDLTGKN-LH--PDVTGRLLSQGVIAFRCPRSFMD--QPLAEHFSPFRVQ-HMDLSNSV----IEVSTLHGILSQC 117 (336)
T ss_dssp TSSEEECTTCB-CC--HHHHHHHHHTTCSEEECTTCEEC--SCCCSCCCCBCCC-EEECTTCE----ECHHHHHHHHTTB
T ss_pred hheeecccccc-CC--HHHHHhhhhccceEEEcCCcccc--ccchhhccCCCCC-EEEccCCC----cCHHHHHHHHhhC
Confidence 47899999884 44 6667777 88888876433211 1122345667777 77765432 222 245567788
Q ss_pred cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC---ccchhhhccCcceeeeeccCCCceeeCCC
Q 037108 83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK---FAIYTLSITGDSLFSRYARMGKWIPHGSG 159 (239)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---~p~~~l~l~~~~~~L~l~~~~~l~~~~~~ 159 (239)
++|+.|+++.+.. ....+..+...++|+.|++.++.... ++..+..+.. -..|.+.++.++.....+
T Consensus 118 ~~L~~L~L~~~~l---------~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~-L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 118 SKLQNLSLEGLRL---------SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR-LDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp CCCSEEECTTCBC---------CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT-CCEEECCCCTTCCHHHHH
T ss_pred CCCCEEeCcCccc---------CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC-CCEEcCCCCCCcChHHHH
Confidence 9999999985431 23345566678999999999884322 2332211100 001344433333211001
Q ss_pred CCCCcCC-cccEEeeccCc-ccc-cccc---CCCCcccEEEeccccccc----cccCCCCcccEEEecccCccc
Q 037108 160 KSDEGLA-DLRELFLVSCS-KLQ-RTLL---EYLPSLETLVIRKCEQLL----VSILSLPTLRKLTVNGCKEVV 223 (239)
Q Consensus 160 ~~~~~~~-~L~~L~l~~~~-~L~-~~~p---~~l~~L~~L~l~~c~~l~----~~~~~l~~L~~L~i~~c~~l~ 223 (239)
...+.++ +|++|++++|. .+. +.+| ..+|+|++|++++|..+. ..+..+++|++|++++|..+.
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 1234588 99999999985 343 2343 268999999999998543 256788999999999998554
No 33
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.33 E-value=5e-12 Score=107.40 Aligned_cols=210 Identities=20% Similarity=0.159 Sum_probs=133.9
Q ss_pred CcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccc
Q 037108 7 LHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLK 86 (239)
Q Consensus 7 Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 86 (239)
.+.++.++. .++++|.++. .++++|++....- .......++++++|+ .|++.+.. .....+..+.++++|+
T Consensus 56 ~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i-~~~~~~~~~~l~~L~-~L~Ls~n~----i~~~~~~~~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRR-GLSEVPQGIP--SNTRYLNLMENNI-QMIQADTFRHLHHLE-VLQLGRNS----IRQIEVGAFNGLASLN 126 (452)
T ss_dssp SCEEECCSS-CCSSCCSCCC--TTCSEEECCSSCC-CEECTTTTTTCTTCC-EEECCSSC----CCEECTTTTTTCTTCC
T ss_pred CcEEEECCC-CcCccCCCCC--CCccEEECcCCcC-ceECHHHcCCCCCCC-EEECCCCc----cCCcChhhccCcccCC
Confidence 456777777 5899998776 6888887754321 112234567777777 77775432 2233345677889999
Q ss_pred cceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccch-hhhccCcceeeeeccCCCceeeCCCCCCCcC
Q 037108 87 DLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIY-TLSITGDSLFSRYARMGKWIPHGSGKSDEGL 165 (239)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~ 165 (239)
.|+++.+..... ....+..+++|+.|+++++....+|.. +..+.. -..|.+.++..+.... +..+..+
T Consensus 127 ~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~~~~l~~i~-~~~~~~l 195 (452)
T 3zyi_A 127 TLELFDNWLTVI---------PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS-LMRLDLGELKKLEYIS-EGAFEGL 195 (452)
T ss_dssp EEECCSSCCSBC---------CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTT-CCEEECCCCTTCCEEC-TTTTTTC
T ss_pred EEECCCCcCCcc---------ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCc-ccEEeCCCCCCccccC-hhhccCC
Confidence 999986542211 122355678999999999876655542 111000 0024555554554443 3356789
Q ss_pred CcccEEeeccCccccccccC--CCCcccEEEeccccc--c-ccccCCCCcccEEEecccCccccccccccCccceEee
Q 037108 166 ADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCEQ--L-LVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLW 238 (239)
Q Consensus 166 ~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~~ 238 (239)
++|++|+++++ +++ .+|. .+++|++|+++++.- + +..+..+++|++|++.++.--...+..+..+++|+.+
T Consensus 196 ~~L~~L~L~~n-~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 196 FNLKYLNLGMC-NIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp TTCCEEECTTS-CCS-SCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCC-ccc-ccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 99999999987 665 5664 678999999998762 2 3467889999999999876544445555555555443
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.32 E-value=3.5e-12 Score=110.07 Aligned_cols=211 Identities=12% Similarity=0.043 Sum_probs=108.9
Q ss_pred ccCcEEeCCCCCCCc-ccCccC-----CCCccCCccCceEeccCCCCChhhhccc---ccccceEEEEeccCCCChhHHH
Q 037108 5 IKLHHLNNPSTDSLE-EMPQGI-----GKLTSLRTMCKFVVGNEIGSGLRQLKSL---IHLQGTVCISRLENVKEISAAK 75 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~-~lP~~i-----~~L~~L~~L~~~~~~~~~~~~i~~L~~L---~~L~~~L~~~~~~~~~~~~~~~ 75 (239)
.+|++|++++|. +. .+|..+ +++++|+.+++...... .....+..+ ++++ .+.+.+..-.. .
T Consensus 247 ~~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~--~p~~~~~~~~~~~~L~-~L~l~~n~l~~-~---- 317 (520)
T 2z7x_B 247 TTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVFG--FPQSYIYEIFSNMNIK-NFTVSGTRMVH-M---- 317 (520)
T ss_dssp SSCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEEEEEEECCCC--SCTHHHHHHHHTCCCS-EEEEESSCCCC-C----
T ss_pred CcccEEEeeccc-ccCccccchhhcccccCceeEecccccccee--cchhhhhcccccCcee-EEEcCCCcccc-c----
Confidence 378888888884 44 889888 88888888876543321 010122222 3355 55554432111 0
Q ss_pred HhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc---chhhhccCcceeeeeccCCC
Q 037108 76 EAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA---IYTLSITGDSLFSRYARMGK 152 (239)
Q Consensus 76 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p---~~~l~l~~~~~~L~l~~~~~ 152 (239)
.....+++|+.|+++.+.... ..+..+..+++|+.|++.++....++ .++..+..- ..|.+.+..
T Consensus 318 -~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~- 385 (520)
T 2z7x_B 318 -LCPSKISPFLHLDFSNNLLTD---------TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNS- 385 (520)
T ss_dssp -CCCSSCCCCCEEECCSSCCCT---------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSC-
T ss_pred -cchhhCCcccEEEeECCccCh---------hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCc-
Confidence 011455667777766443211 12334455566777777666544322 222110000 001221110
Q ss_pred ceeeCCCCCCCcCCcccEEeeccCccccccccCCC-CcccEEEecccc--ccccccCCCCcccEEEecccCcccccccc-
Q 037108 153 WIPHGSGKSDEGLADLRELFLVSCSKLQRTLLEYL-PSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCKEVVGRAIN- 228 (239)
Q Consensus 153 l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~~l-~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~~l~~~~~~- 228 (239)
+........+..+++|++|++++| ++.+.+|..+ ++|+.|+++++. .++..+..+++|++|++++| ++...+..
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~ 463 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGI 463 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSS-CCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCcccccchhccCccCCEEECcCC-CCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHH
Confidence 000000112455678888888876 4545666555 588888887764 34344557778888888876 34444443
Q ss_pred ccCccceEee
Q 037108 229 LSSSSSVVLW 238 (239)
Q Consensus 229 ~~~l~~L~~~ 238 (239)
+..+++|+.+
T Consensus 464 ~~~l~~L~~L 473 (520)
T 2z7x_B 464 FDRLTSLQKI 473 (520)
T ss_dssp TTTCTTCCEE
T ss_pred hccCCcccEE
Confidence 5555555443
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.32 E-value=2.8e-11 Score=103.16 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=33.8
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEe
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISR 64 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~ 64 (239)
+++++|++|++++| .+..+|. ++++++|++|++..+.- ..+..++++++|+ .|++..
T Consensus 87 ~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l---~~~~~~~~l~~L~-~L~l~~ 143 (466)
T 1o6v_A 87 KNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQI---TDIDPLKNLTNLN-RLELSS 143 (466)
T ss_dssp TTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC---CCCGGGTTCTTCS-EEEEEE
T ss_pred hccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCCC---CCChHHcCCCCCC-EEECCC
Confidence 45677777777777 4666665 77777777776643321 1222355555555 555544
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.32 E-value=1.4e-11 Score=106.34 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=9.8
Q ss_pred hhhcccccccceEEEEe
Q 037108 48 RQLKSLIHLQGTVCISR 64 (239)
Q Consensus 48 ~~L~~L~~L~~~L~~~~ 64 (239)
..++++++|+ .|++.+
T Consensus 109 ~~~~~l~~L~-~L~L~~ 124 (520)
T 2z7x_B 109 KEFGNMSQLK-FLGLST 124 (520)
T ss_dssp GGGGGCTTCC-EEEEEE
T ss_pred hhhccCCcce-EEEecC
Confidence 4566666666 666654
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.32 E-value=1.6e-11 Score=104.65 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=57.0
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
..+.+|++|++++| .++.+|+ ++++++|++|++..+.. ..+..++++++|+ .|++.+.. ..... .+..
T Consensus 65 ~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l---~~~~~~~~l~~L~-~L~L~~n~-l~~~~-----~~~~ 132 (466)
T 1o6v_A 65 EYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQI---ADITPLANLTNLT-GLTLFNNQ-ITDID-----PLKN 132 (466)
T ss_dssp GGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC---CCCGGGTTCTTCC-EEECCSSC-CCCCG-----GGTT
T ss_pred hhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCcc---ccChhhcCCCCCC-EEECCCCC-CCCCh-----HHcC
Confidence 46789999999999 5888887 99999999998754322 2233377788888 78775532 22111 2667
Q ss_pred ccccccceeEEcC
Q 037108 82 KRNLKDLLLEWNN 94 (239)
Q Consensus 82 l~~L~~L~l~~~~ 94 (239)
+++|+.|+++.+.
T Consensus 133 l~~L~~L~l~~n~ 145 (466)
T 1o6v_A 133 LTNLNRLELSSNT 145 (466)
T ss_dssp CTTCSEEEEEEEE
T ss_pred CCCCCEEECCCCc
Confidence 7888888888664
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.31 E-value=6e-12 Score=110.57 Aligned_cols=215 Identities=13% Similarity=0.091 Sum_probs=116.4
Q ss_pred CcccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
++++|++|++++| .+..+|+ .++++++|++|++..... .......++++++|+ .|.+.+.. ........+.+
T Consensus 73 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~L~~n~----l~~l~~~~~~~ 145 (597)
T 3oja_B 73 SFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLT-VLVLERND----LSSLPRGIFHN 145 (597)
T ss_dssp HCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTT
T ss_pred cCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcC-CCCCHHHHcCCCCCC-EEEeeCCC----CCCCCHHHhcc
Confidence 4677888888887 4666654 778888888887654332 222233456666666 66665432 11222233566
Q ss_pred ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc-chhhhcc-----CcceeeeeccCCCcee
Q 037108 82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA-IYTLSIT-----GDSLFSRYARMGKWIP 155 (239)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~l~l~-----~~~~~L~l~~~~~l~~ 155 (239)
+++|+.|+++.+..... .+..+..+++|+.|++.++....++ ..+..+. +.. +-.+...+++..
T Consensus 146 l~~L~~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~L~~ 215 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERI---------EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL-LSTLAIPIAVEE 215 (597)
T ss_dssp CTTCCEEECCSSCCCBC---------CTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSC-CSEEECCTTCSE
T ss_pred CCCCCEEEeeCCcCCCC---------ChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCc-cccccCCchhhe
Confidence 77888888875542211 1233555678888888776544432 1111110 000 000011111211
Q ss_pred eCCC------CCCCcCCcccEEeeccCcccccccc--CCCCcccEEEeccccc---cccccCCCCcccEEEecccCcccc
Q 037108 156 HGSG------KSDEGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCEQ---LLVSILSLPTLRKLTVNGCKEVVG 224 (239)
Q Consensus 156 ~~~~------~~~~~~~~L~~L~l~~~~~L~~~~p--~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~i~~c~~l~~ 224 (239)
+... .....+++|+.|+++++ .+. ..+ ..+++|+.|+++++.- .+..+..+++|++|++++|. +..
T Consensus 216 L~ls~n~l~~~~~~~~~~L~~L~L~~n-~l~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 292 (597)
T 3oja_B 216 LDASHNSINVVRGPVNVELTILKLQHN-NLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVA 292 (597)
T ss_dssp EECCSSCCCEEECSCCSCCCEEECCSS-CCC-CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCE
T ss_pred eeccCCcccccccccCCCCCEEECCCC-CCC-CChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCC
Confidence 1100 01123467888888876 454 222 2578899999988762 23467788999999999864 444
Q ss_pred ccccccCccceEe
Q 037108 225 RAINLSSSSSVVL 237 (239)
Q Consensus 225 ~~~~~~~l~~L~~ 237 (239)
.+.....+++|+.
T Consensus 293 l~~~~~~l~~L~~ 305 (597)
T 3oja_B 293 LNLYGQPIPTLKV 305 (597)
T ss_dssp EECSSSCCTTCCE
T ss_pred CCcccccCCCCcE
Confidence 4444444444444
No 39
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.30 E-value=1.7e-12 Score=105.23 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=37.0
Q ss_pred CcccCcEEeCCCCCCCcccC-ccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEE
Q 037108 3 NLIKLHHLNNPSTDSLEEMP-QGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCIS 63 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~ 63 (239)
.+++|++|++++| .++.+| ..++++++|++|++....-. .+..+..+++|+ .|++.
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~l~~L~-~L~Ls 88 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLY---ETLDLESLSTLR-TLDLN 88 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCE---EEEEETTCTTCC-EEECC
T ss_pred cCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCC---cchhhhhcCCCC-EEECc
Confidence 3568999999999 477776 57899999999987432211 112255566666 56554
No 40
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.30 E-value=1.6e-11 Score=99.21 Aligned_cols=186 Identities=17% Similarity=0.153 Sum_probs=119.6
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK 82 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 82 (239)
++.+|++|++++| .++.+| +++++++|++|++..+.- ..+..+.++++|+ .|++.+.. +... ..+..+
T Consensus 39 ~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i---~~~~~~~~l~~L~-~L~L~~n~-l~~~-----~~~~~l 106 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQI---TDLAPLKNLTKIT-ELELSGNP-LKNV-----SAIAGL 106 (308)
T ss_dssp HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCC---CCCGGGTTCCSCC-EEECCSCC-CSCC-----GGGTTC
T ss_pred HcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcC---CCChhHccCCCCC-EEEccCCc-CCCc-----hhhcCC
Confidence 4778999999999 588888 689999999998754332 2233377777777 77775443 2211 246778
Q ss_pred cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108 83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD 162 (239)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~ 162 (239)
++|+.|+++.+.... ...+..+++|+.|++.++.....+. +..+..- ..|.+.+. .+.. .+.+
T Consensus 107 ~~L~~L~l~~n~l~~-----------~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L-~~L~l~~n-~l~~---~~~l 169 (308)
T 1h6u_A 107 QSIKTLDLTSTQITD-----------VTPLAGLSNLQVLYLDLNQITNISP-LAGLTNL-QYLSIGNA-QVSD---LTPL 169 (308)
T ss_dssp TTCCEEECTTSCCCC-----------CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTC-CEEECCSS-CCCC---CGGG
T ss_pred CCCCEEECCCCCCCC-----------chhhcCCCCCCEEECCCCccCcCcc-ccCCCCc-cEEEccCC-cCCC---Chhh
Confidence 889999988654221 1235667899999998886655543 1110000 01222221 1111 1225
Q ss_pred CcCCcccEEeeccCcccccccc--CCCCcccEEEecccc--ccccccCCCCcccEEEecccC
Q 037108 163 EGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCK 220 (239)
Q Consensus 163 ~~~~~L~~L~l~~~~~L~~~~p--~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~ 220 (239)
..+++|++|+++++ +++ .++ ..+++|++|+++++. .+. .+..+++|++|++++++
T Consensus 170 ~~l~~L~~L~l~~n-~l~-~~~~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 170 ANLSKLTTLKADDN-KIS-DISPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TTCTTCCEEECCSS-CCC-CCGGGGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred cCCCCCCEEECCCC-ccC-cChhhcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence 67889999999876 555 443 268899999998876 232 46788899999998875
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.30 E-value=6.4e-12 Score=110.33 Aligned_cols=217 Identities=15% Similarity=0.129 Sum_probs=116.6
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
+.+.+|++|+++++ .+..+| .++++++|++|++..+.. ..+..+ .+++|+ .+.+....... ...+..
T Consensus 282 ~~l~~L~~L~l~~~-~~~~l~-~l~~~~~L~~L~l~~n~l---~~lp~~-~l~~L~-~L~l~~n~~~~------~~~~~~ 348 (606)
T 3vq2_A 282 HCLANVSAMSLAGV-SIKYLE-DVPKHFKWQSLSIIRCQL---KQFPTL-DLPFLK-SLTLTMNKGSI------SFKKVA 348 (606)
T ss_dssp GGGTTCSEEEEESC-CCCCCC-CCCTTCCCSEEEEESCCC---SSCCCC-CCSSCC-EEEEESCSSCE------ECCCCC
T ss_pred ccCCCCCEEEecCc-cchhhh-hccccccCCEEEcccccC---cccccC-CCCccc-eeeccCCcCcc------chhhcc
Confidence 35677888888888 477788 788888888887655433 122233 566666 66665443211 113445
Q ss_pred ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhc--------cCcce-----eeeec
Q 037108 82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSI--------TGDSL-----FSRYA 148 (239)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l--------~~~~~-----~L~l~ 148 (239)
+++|+.|+++.+.... .......+..+++|+.|++.++.....|..+..+ .+..- +-.+.
T Consensus 349 l~~L~~L~ls~n~l~~-------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSF-------SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp CTTCCEEECCSSCEEE-------EEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred CCCCCEEECcCCccCC-------CcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 5666666665332100 0000111222344444544444322222111000 00000 00111
Q ss_pred cCCCceeeC---------CCCCCCcCCcccEEeeccCcccccc-ccC---CCCcccEEEecccccc---ccccCCCCccc
Q 037108 149 RMGKWIPHG---------SGKSDEGLADLRELFLVSCSKLQRT-LLE---YLPSLETLVIRKCEQL---LVSILSLPTLR 212 (239)
Q Consensus 149 ~~~~l~~~~---------~~~~~~~~~~L~~L~l~~~~~L~~~-~p~---~l~~L~~L~l~~c~~l---~~~~~~l~~L~ 212 (239)
.+++++.+. .+..++.+++|++|++++| .+.+. +|. .+++|++|++++|.-- +..+..+++|+
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 222222211 1345677888999999877 45432 453 5688999999887521 23567889999
Q ss_pred EEEecccCccccccccccCccceEeeC
Q 037108 213 KLTVNGCKEVVGRAINLSSSSSVVLWD 239 (239)
Q Consensus 213 ~L~i~~c~~l~~~~~~~~~l~~L~~~~ 239 (239)
+|++++|.-....+..+..+++|+.+|
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred EEECCCCcCCCcCHHHccCCCcCCEEE
Confidence 999999865555577777766666543
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.30 E-value=1.5e-12 Score=104.99 Aligned_cols=215 Identities=18% Similarity=0.125 Sum_probs=129.9
Q ss_pred ccCcEEeCCCCCCCcccCcc-CCCCccCCccCceEeccCC-CCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108 5 IKLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCKFVVGNEI-GSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK 82 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~-~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 82 (239)
.+|++|+++++ .++.+|.+ ++++++|++|++....-.. +........+++|+ .|++.+.. .. ..+..+..+
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~-~L~Ls~n~----i~-~l~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK-YLDLSFNG----VI-TMSSNFLGL 100 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC-EEECCSCS----EE-EEEEEEETC
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccC-EEECCCCc----cc-cChhhcCCC
Confidence 57999999999 58999977 6999999999875432110 01123444567777 77765432 11 123346678
Q ss_pred cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCc-cchhhhccCcceeeeeccCCCceeeCCCCC
Q 037108 83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKF-AIYTLSITGDSLFSRYARMGKWIPHGSGKS 161 (239)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~ 161 (239)
++|+.|+++.+.... ......+..+++|+.|++.++..... +..+..+..- ..+.+.+.. +.....+..
T Consensus 101 ~~L~~L~l~~n~l~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~-l~~~~~~~~ 170 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQ--------MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNS-FQENFLPDI 170 (306)
T ss_dssp TTCCEEECTTSEEES--------STTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-CEEECTTCE-EGGGEECSC
T ss_pred CCCCEEECCCCcccc--------cccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-CEEECCCCc-cccccchhH
Confidence 899999987543211 01123456678999999988764332 2222111000 012222210 111011456
Q ss_pred CCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc--cc-cccCCCCcccEEEecccCccccccccccCc-cc
Q 037108 162 DEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--LL-VSILSLPTLRKLTVNGCKEVVGRAINLSSS-SS 234 (239)
Q Consensus 162 ~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l~-~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l-~~ 234 (239)
++.+++|++|+++++ ++++..|. .+++|++|+++++.- +. ..+..+++|++|++++|.-....+..+..+ ++
T Consensus 171 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 171 FTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp CTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred HhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 678999999999987 56533343 578999999988762 22 256788999999999986555555555444 24
Q ss_pred eEe
Q 037108 235 VVL 237 (239)
Q Consensus 235 L~~ 237 (239)
|+.
T Consensus 250 L~~ 252 (306)
T 2z66_A 250 LAF 252 (306)
T ss_dssp CCE
T ss_pred CCE
Confidence 443
No 43
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=3.6e-12 Score=115.98 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=76.4
Q ss_pred CCCcccCcEEeCCCCCCCcc------------------cCccCC--CCccCCccCceEeccCCCCChhhhcccccccceE
Q 037108 1 MGNLIKLHHLNNPSTDSLEE------------------MPQGIG--KLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTV 60 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~------------------lP~~i~--~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L 60 (239)
+++|++|++|++++|. +.. +|++++ +|++|++|++..+.. .+..+..++++++|+ .|
T Consensus 444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~-~L 520 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQ-SL 520 (876)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSSCC-EE
T ss_pred HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChHHHhCCCCCC-EE
Confidence 4678999999999995 666 999999 999999998865432 233446688888888 77
Q ss_pred EEEeccCCCChhH-HHHh-------ccCcccccccceeEEcCCCCCCCCCcchHHHhh--cCCCCCCcceEEEeccCCCC
Q 037108 61 CISRLENVKEISA-AKEA-------QLNGKRNLKDLLLEWNNSTSNIREPETDTCVLD--LLKPHQSLKKLKINGYGGTK 130 (239)
Q Consensus 61 ~~~~~~~~~~~~~-~~~~-------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~ 130 (239)
.+.+...+ .. ..+. .+..+++|+.|+++.+... .++. .+..+++|+.|+++++....
T Consensus 521 ~Ls~N~~l---sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~----------~ip~~~~l~~L~~L~~L~Ls~N~l~~ 587 (876)
T 4ecn_A 521 NIACNRGI---SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE----------EFPASASLQKMVKLGLLDCVHNKVRH 587 (876)
T ss_dssp ECTTCTTS---CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC----------BCCCHHHHTTCTTCCEEECTTSCCCB
T ss_pred ECcCCCCc---ccccchHHHHhhhhcccccCCccEEEeeCCcCC----------ccCChhhhhcCCCCCEEECCCCCccc
Confidence 77543312 11 2233 2334458888888855422 2333 45556677777777765555
Q ss_pred cc
Q 037108 131 FA 132 (239)
Q Consensus 131 ~p 132 (239)
+|
T Consensus 588 lp 589 (876)
T 4ecn_A 588 LE 589 (876)
T ss_dssp CC
T ss_pred ch
Confidence 55
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.30 E-value=3.8e-12 Score=103.75 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=43.9
Q ss_pred CCCCcCCcccEEeeccCcccccccc---CCCCcccEEEecccc--ccccccCCCCcccEEEecccC
Q 037108 160 KSDEGLADLRELFLVSCSKLQRTLL---EYLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCK 220 (239)
Q Consensus 160 ~~~~~~~~L~~L~l~~~~~L~~~~p---~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~ 220 (239)
..+..+++|++|+++++ .+.+..+ ..+++|++|+++++. .++..+..+++|++|++++++
T Consensus 211 ~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp TSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred HHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC
Confidence 35667889999999876 5552322 257899999998765 444567788999999999865
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.29 E-value=3.2e-11 Score=105.13 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=14.6
Q ss_pred cccEEEecccc--ccccccCCCCcccEEEeccc
Q 037108 189 SLETLVIRKCE--QLLVSILSLPTLRKLTVNGC 219 (239)
Q Consensus 189 ~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c 219 (239)
+|++|+++++. .++..+..+++|++|+++++
T Consensus 451 ~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp TCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS
T ss_pred cCCEEECCCCcCcccChhhcCCCCCCEEECCCC
Confidence 45555554442 12223334555666666554
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.29 E-value=2.2e-12 Score=113.29 Aligned_cols=198 Identities=18% Similarity=0.051 Sum_probs=113.2
Q ss_pred CCcccCcEEeCCCCCCCccc---CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHH-h
Q 037108 2 GNLIKLHHLNNPSTDSLEEM---PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKE-A 77 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~l---P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~-~ 77 (239)
+.+++|++|++++|. +..+ |..++++++|++|++..+.... ....+..+++|+ .+.+.+.. .....+ .
T Consensus 347 ~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~l~~L~-~L~l~~n~----l~~~~~~~ 418 (606)
T 3vq2_A 347 VALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAII--MSANFMGLEELQ-HLDFQHST----LKRVTEFS 418 (606)
T ss_dssp CCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEE--ECCCCTTCTTCC-EEECTTSE----EESTTTTT
T ss_pred ccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCcccc--chhhccCCCCCC-eeECCCCc----cCCccChh
Confidence 568899999999984 6665 7788899999999775432111 113455566666 66654322 111112 3
Q ss_pred ccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC--ccchhhhccCcceeeeeccCCCcee
Q 037108 78 QLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK--FAIYTLSITGDSLFSRYARMGKWIP 155 (239)
Q Consensus 78 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~~l~l~~~~~~L~l~~~~~l~~ 155 (239)
.+..+++|+.|+++.+... ...+..+..+++|+.|++.++.... .|..+..+..- ..|.+.++ .+..
T Consensus 419 ~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~Ls~n-~l~~ 487 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTK---------IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL-TFLDLSKC-QLEQ 487 (606)
T ss_dssp TTTTCTTCCEEECTTSCCE---------ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-CEEECTTS-CCCE
T ss_pred hhhccccCCEEECcCCCCC---------ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC-CEEECCCC-cCCc
Confidence 4667788888888754321 1123345566788888888765432 23322110000 01222222 1111
Q ss_pred eCCCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--ccccccCCCC-cccEEEecccC
Q 037108 156 HGSGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLVSILSLP-TLRKLTVNGCK 220 (239)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~~~~~l~-~L~~L~i~~c~ 220 (239)
. .+..++.+++|++|+++++ ++.+..|. .+++|+.|+++++. .++..+..++ +|+++++.+++
T Consensus 488 ~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 488 I-SWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp E-CTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCC
T ss_pred c-ChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCC
Confidence 1 1344667888888888877 55544453 46778888887765 2333455666 58888887653
No 47
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.27 E-value=4.4e-11 Score=94.66 Aligned_cols=192 Identities=15% Similarity=0.143 Sum_probs=91.2
Q ss_pred cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108 6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL 85 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L 85 (239)
+.++++++++ .++.+|..+. .++++|++....- .......+.++++|+ .|.+.+.. ........+.++++|
T Consensus 17 ~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l-~~~~~~~~~~l~~L~-~L~l~~n~----l~~i~~~~~~~l~~L 87 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKL-SSLPSKAFHRLTKLR-LLYLNDNK----LQTLPAGIFKELKNL 87 (270)
T ss_dssp TTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCC-SCCCTTSSSSCTTCC-EEECCSSC----CSCCCTTTTSSCTTC
T ss_pred CCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCC-CeeCHHHhcCCCCCC-EEECCCCc----cCeeChhhhcCCCCC
Confidence 3456666666 3666665554 4556655433221 111112344555555 55553321 111112223455666
Q ss_pred ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccch-hhhccCcceeeeeccCCCceeeCCCCCCCc
Q 037108 86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIY-TLSITGDSLFSRYARMGKWIPHGSGKSDEG 164 (239)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~ 164 (239)
+.|+++.+..... ....+..+++|+.|++.++....++.. +..+..- ..|.+.+. .+.... +..++.
T Consensus 88 ~~L~l~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n-~l~~~~-~~~~~~ 155 (270)
T 2o6q_A 88 ETLWVTDNKLQAL---------PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-TYLSLGYN-ELQSLP-KGVFDK 155 (270)
T ss_dssp CEEECCSSCCCCC---------CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSS-CCCCCC-TTTTTT
T ss_pred CEEECCCCcCCcC---------CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-CEEECCCC-cCCccC-HhHccC
Confidence 6666664432110 011223445666666666544433321 1000000 00111111 011110 123566
Q ss_pred CCcccEEeeccCccccccccC----CCCcccEEEecccc--cccc-ccCCCCcccEEEecccC
Q 037108 165 LADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE--QLLV-SILSLPTLRKLTVNGCK 220 (239)
Q Consensus 165 ~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~--~l~~-~~~~l~~L~~L~i~~c~ 220 (239)
+++|++|+++++ .++ .++. .+++|++|+++++. .+.. .+..+++|+.|++.+++
T Consensus 156 l~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 156 LTSLKELRLYNN-QLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CTTCCEEECCSS-CCS-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccceeEecCC-cCc-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 888899998876 555 4432 46788888888764 2222 35667888888888754
No 48
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.27 E-value=4.1e-11 Score=94.84 Aligned_cols=174 Identities=18% Similarity=0.133 Sum_probs=103.9
Q ss_pred ccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 5 IKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
.++++|+++++ .++.+|. .++++++|++|++....-. ......++++++|+ .|.+.+.. ........+..++
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~-~L~l~~n~----l~~~~~~~~~~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLE-TLWVTDNK----LQALPIGVFDQLV 109 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCC-EEECCSSC----CCCCCTTTTTTCS
T ss_pred CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCC-EEECCCCc----CCcCCHhHccccc
Confidence 46899999999 4788875 6899999999987543221 11112245666777 77765432 1122224456778
Q ss_pred ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchh-hhccCcceeeeeccCCCceeeCCCCCC
Q 037108 84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYT-LSITGDSLFSRYARMGKWIPHGSGKSD 162 (239)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~-l~l~~~~~~L~l~~~~~l~~~~~~~~~ 162 (239)
+|+.|+++.+..... ....+..+++|+.|++.++....+|... ..+..- ..+.+.+. .+... .+..+
T Consensus 110 ~L~~L~l~~n~l~~~---------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n-~l~~~-~~~~~ 177 (270)
T 2o6q_A 110 NLAELRLDRNQLKSL---------PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL-KELRLYNN-QLKRV-PEGAF 177 (270)
T ss_dssp SCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSS-CCSCC-CTTTT
T ss_pred CCCEEECCCCccCee---------CHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc-ceeEecCC-cCcEe-ChhHh
Confidence 899999886543211 1223456789999999888766655421 110000 01222211 11111 12345
Q ss_pred CcCCcccEEeeccCccccccccC----CCCcccEEEecccc
Q 037108 163 EGLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE 199 (239)
Q Consensus 163 ~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~ 199 (239)
..+++|++|+++++ +++ .+|. .+++|+.|++.+++
T Consensus 178 ~~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 178 DKLTELKTLKLDNN-QLK-RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSS-CCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCcCEEECCCC-cCC-cCCHHHhccccCCCEEEecCCC
Confidence 67899999999987 676 5543 57899999998755
No 49
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.27 E-value=2.7e-11 Score=96.03 Aligned_cols=171 Identities=18% Similarity=0.160 Sum_probs=101.8
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK 82 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 82 (239)
++.+|+.|+++++ .++.+| +++++++|++|++..... ..+..++++++|+ .|.+.+.. ........+..+
T Consensus 39 ~l~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~l---~~~~~l~~l~~L~-~L~L~~n~----l~~~~~~~~~~l 108 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGNKL---HDISALKELTNLT-YLILTGNQ----LQSLPNGVFDKL 108 (272)
T ss_dssp HHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTSCC---CCCGGGTTCTTCC-EEECTTSC----CCCCCTTTTTTC
T ss_pred cccceeeeeeCCC-Cccccc-ccccCCCCcEEECCCCCC---CCchhhcCCCCCC-EEECCCCc----cCccChhHhcCC
Confidence 4678999999998 477776 588999999998754332 2345677777777 77764432 222223346677
Q ss_pred cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108 83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD 162 (239)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~ 162 (239)
++|+.|+++.+..... ....+..+++|+.|++.++....+|. ..+
T Consensus 109 ~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~--------------------------~~~ 153 (272)
T 3rfs_A 109 TNLKELVLVENQLQSL---------PDGVFDKLTNLTYLNLAHNQLQSLPK--------------------------GVF 153 (272)
T ss_dssp TTCCEEECTTSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TTT
T ss_pred cCCCEEECCCCcCCcc---------CHHHhccCCCCCEEECCCCccCccCH--------------------------HHh
Confidence 8889988885542211 11224556789999998875544432 122
Q ss_pred CcCCcccEEeeccCcccccccc---CCCCcccEEEeccccc--cc-cccCCCCcccEEEeccc
Q 037108 163 EGLADLRELFLVSCSKLQRTLL---EYLPSLETLVIRKCEQ--LL-VSILSLPTLRKLTVNGC 219 (239)
Q Consensus 163 ~~~~~L~~L~l~~~~~L~~~~p---~~l~~L~~L~l~~c~~--l~-~~~~~l~~L~~L~i~~c 219 (239)
+.+++|++|+++++ ++++..+ ..+++|++|+++++.- +. ..+..+++|++|++.++
T Consensus 154 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 154 DKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 44566666666655 4442222 1356666666665541 11 12455666666666653
No 50
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.27 E-value=3.6e-11 Score=97.09 Aligned_cols=167 Identities=15% Similarity=0.139 Sum_probs=108.9
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
+.+++|++|++++| .++.+|. ++++++|++|++....- ..+..+.++++|+ .|.+.+.. +... ..+..
T Consensus 60 ~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l---~~~~~~~~l~~L~-~L~l~~n~-l~~~-----~~l~~ 127 (308)
T 1h6u_A 60 QYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPL---KNVSAIAGLQSIK-TLDLTSTQ-ITDV-----TPLAG 127 (308)
T ss_dssp GGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCC---SCCGGGTTCTTCC-EEECTTSC-CCCC-----GGGTT
T ss_pred hccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcC---CCchhhcCCCCCC-EEECCCCC-CCCc-----hhhcC
Confidence 46889999999999 5899998 99999999998865432 2345677777777 77765432 2211 23677
Q ss_pred ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCC
Q 037108 82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKS 161 (239)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~ 161 (239)
+++|+.|+++.+..... ..+..+++|+.|++.++....++. +..+..- ..|.+.+. .+.. .+.
T Consensus 128 l~~L~~L~l~~n~l~~~-----------~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L-~~L~l~~n-~l~~---~~~ 190 (308)
T 1h6u_A 128 LSNLQVLYLDLNQITNI-----------SPLAGLTNLQYLSIGNAQVSDLTP-LANLSKL-TTLKADDN-KISD---ISP 190 (308)
T ss_dssp CTTCCEEECCSSCCCCC-----------GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTC-CEEECCSS-CCCC---CGG
T ss_pred CCCCCEEECCCCccCcC-----------ccccCCCCccEEEccCCcCCCChh-hcCCCCC-CEEECCCC-ccCc---Chh
Confidence 88999999986643211 114556799999999886655543 1110000 01222211 1111 123
Q ss_pred CCcCCcccEEeeccCcccccccc--CCCCcccEEEecccc
Q 037108 162 DEGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCE 199 (239)
Q Consensus 162 ~~~~~~L~~L~l~~~~~L~~~~p--~~l~~L~~L~l~~c~ 199 (239)
+..+++|++|+++++ ++. .++ ..+++|+.|++++++
T Consensus 191 l~~l~~L~~L~L~~N-~l~-~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 191 LASLPNLIEVHLKNN-QIS-DVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GGGCTTCCEEECTTS-CCC-BCGGGTTCTTCCEEEEEEEE
T ss_pred hcCCCCCCEEEccCC-ccC-ccccccCCCCCCEEEccCCe
Confidence 567999999999987 565 333 268999999998876
No 51
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=9.5e-12 Score=113.20 Aligned_cols=82 Identities=13% Similarity=0.115 Sum_probs=50.1
Q ss_pred CcccCcEEeCCCCCCCcccCc--cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQ--GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN 80 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~--~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~ 80 (239)
.+++|++|++++| .+..+|. .++++++|++|++...... .+..++++++|+ .|.+.+..- . ..+..+.
T Consensus 546 ~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~---~lp~~~~L~~L~-~L~Ls~N~l----~-~lp~~l~ 615 (876)
T 4ecn_A 546 TGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKLT-DLKLDYNQI----E-EIPEDFC 615 (876)
T ss_dssp TTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCC---BCCCCCTTSEES-EEECCSSCC----S-CCCTTSC
T ss_pred ccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcc---cchhhcCCCcce-EEECcCCcc----c-cchHHHh
Confidence 4558888888888 4678888 8888888888876443221 222556666666 565543221 1 2233455
Q ss_pred cccc-cccceeEEcC
Q 037108 81 GKRN-LKDLLLEWNN 94 (239)
Q Consensus 81 ~l~~-L~~L~l~~~~ 94 (239)
.+++ |+.|.++.+.
T Consensus 616 ~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 616 AFTDQVEGLGFSHNK 630 (876)
T ss_dssp EECTTCCEEECCSSC
T ss_pred hccccCCEEECcCCC
Confidence 5666 7777666543
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.25 E-value=3.4e-11 Score=97.97 Aligned_cols=217 Identities=15% Similarity=0.070 Sum_probs=121.7
Q ss_pred CCCcccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCC-C-------------------CChhhhcccccccce
Q 037108 1 MGNLIKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEI-G-------------------SGLRQLKSLIHLQGT 59 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~-~-------------------~~i~~L~~L~~L~~~ 59 (239)
++++++|++|++++|. ++.+ |..++++++|++|++....-.. + .....++++++|+ .
T Consensus 72 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~ 149 (330)
T 1xku_A 72 FKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI-V 149 (330)
T ss_dssp TTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCC-E
T ss_pred hccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCcccc-E
Confidence 4678899999999984 7776 7889999999999775432110 0 0011233444444 4
Q ss_pred EEEEeccCCCChhHHHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCc-cchhhhc
Q 037108 60 VCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKF-AIYTLSI 138 (239)
Q Consensus 60 L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~l~l 138 (239)
+++....- . ........+.++++|+.|.++.+... .++..+ .++|+.|++.++..... |..+..+
T Consensus 150 L~l~~n~l-~-~~~~~~~~~~~l~~L~~L~l~~n~l~----------~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l 215 (330)
T 1xku_A 150 VELGTNPL-K-SSGIENGAFQGMKKLSYIRIADTNIT----------TIPQGL--PPSLTELHLDGNKITKVDAASLKGL 215 (330)
T ss_dssp EECCSSCC-C-GGGBCTTGGGGCTTCCEEECCSSCCC----------SCCSSC--CTTCSEEECTTSCCCEECTGGGTTC
T ss_pred EECCCCcC-C-ccCcChhhccCCCCcCEEECCCCccc----------cCCccc--cccCCEEECCCCcCCccCHHHhcCC
Confidence 44432111 0 01122234455666777766644321 111111 26899999988765444 2332111
Q ss_pred cCcceeeeeccCCCceeeCCCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--cccc-cc------C
Q 037108 139 TGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLV-SI------L 206 (239)
Q Consensus 139 ~~~~~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~-~~------~ 206 (239)
..- ..|.+.+. .+.... +..++.+++|++|+++++ ++. .+|. .+++|++|+++++. .+.. .+ .
T Consensus 216 ~~L-~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~ 290 (330)
T 1xku_A 216 NNL-AKLGLSFN-SISAVD-NGSLANTPHLRELHLNNN-KLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290 (330)
T ss_dssp TTC-CEEECCSS-CCCEEC-TTTGGGSTTCCEEECCSS-CCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred CCC-CEEECCCC-cCceeC-hhhccCCCCCCEEECCCC-cCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccc
Confidence 000 01222221 111111 235677899999999987 676 7765 57899999998865 2221 11 1
Q ss_pred CCCcccEEEecccCccc--cccccccCccceEee
Q 037108 207 SLPTLRKLTVNGCKEVV--GRAINLSSSSSVVLW 238 (239)
Q Consensus 207 ~l~~L~~L~i~~c~~l~--~~~~~~~~l~~L~~~ 238 (239)
..++++.+++.+.+-.. ..+..+..+++++.+
T Consensus 291 ~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l 324 (330)
T 1xku_A 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324 (330)
T ss_dssp TSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred ccccccceEeecCcccccccCccccccccceeEE
Confidence 34789999999987532 445566666665544
No 53
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.25 E-value=2.4e-11 Score=91.73 Aligned_cols=55 Identities=11% Similarity=0.224 Sum_probs=32.9
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEE
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCIS 63 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~ 63 (239)
++.+|++|+++++ .++.+| +++++++|++|++..+ ....+..+..+++|+ .+.+.
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n---~~~~~~~l~~l~~L~-~L~l~ 96 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI---HATNYNPISGLSNLE-RLRIM 96 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC---CCSCCGGGTTCTTCC-EEEEE
T ss_pred hcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC---CCCcchhhhcCCCCC-EEEeE
Confidence 3567778888777 467777 6777777777766433 122333444455555 45544
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.25 E-value=1.3e-11 Score=99.84 Aligned_cols=175 Identities=16% Similarity=0.046 Sum_probs=106.3
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCC-----ccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHH
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKL-----TSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKE 76 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L-----~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~ 76 (239)
+.+++|++|++++| .++.+|..++++ ++|++|++....- .......++++++|+ .+++.+..-. .....+
T Consensus 118 ~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~-~L~Ls~N~l~--~~~~~~ 192 (312)
T 1wwl_A 118 ATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALS-TLDLSDNPEL--GERGLI 192 (312)
T ss_dssp CCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCC-EEECCSCTTC--HHHHHH
T ss_pred hcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhccCCCCC-EEECCCCCcC--cchHHH
Confidence 67899999999999 578889888888 8999998754432 223335577777777 7777543311 111122
Q ss_pred hcc--CcccccccceeEEcCCCCCCCCCcchHHHhhc-CCCCCCcceEEEeccCCCCcc--chh---hhccCcceeeeec
Q 037108 77 AQL--NGKRNLKDLLLEWNNSTSNIREPETDTCVLDL-LKPHQSLKKLKINGYGGTKFA--IYT---LSITGDSLFSRYA 148 (239)
Q Consensus 77 ~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~p--~~~---l~l~~~~~~L~l~ 148 (239)
..+ ..+++|+.|+++.+... ....+... ...+++|+.|+++++.....+ ..+ ..++ .|.+.
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~----~L~Ls 261 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGME-------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN----SLNLS 261 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCC-------CHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC----EEECT
T ss_pred HHHHhccCCCCCEEECCCCcCc-------chHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC----EEECC
Confidence 233 77889999999855421 11122222 234579999999987654432 111 0000 12222
Q ss_pred cCCCceeeCCCCCCCcCCcccEEeeccCccccccccC--CCCcccEEEecccc
Q 037108 149 RMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCE 199 (239)
Q Consensus 149 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~ 199 (239)
+. .+. ..|... +++|++|+++++ +++ .+|. .+++|++|++++.+
T Consensus 262 ~N-~l~--~ip~~~--~~~L~~L~Ls~N-~l~-~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 262 FT-GLK--QVPKGL--PAKLSVLDLSYN-RLD-RNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp TS-CCS--SCCSSC--CSEEEEEECCSS-CCC-SCCCTTTSCEEEEEECTTCT
T ss_pred CC-ccC--hhhhhc--cCCceEEECCCC-CCC-CChhHhhCCCCCEEeccCCC
Confidence 21 111 112222 389999999976 676 4464 67899999987754
No 55
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.25 E-value=1.1e-11 Score=98.25 Aligned_cols=169 Identities=16% Similarity=0.115 Sum_probs=107.8
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
+++++|++|++++| .+..+| .++++++|++|++....-. ......++++++|+ .|++.+.. .....+..+..
T Consensus 60 ~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~ 131 (272)
T 3rfs_A 60 QYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLK-ELVLVENQ----LQSLPDGVFDK 131 (272)
T ss_dssp GGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCC-EEECTTSC----CCCCCTTTTTT
T ss_pred ccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccC-ccChhHhcCCcCCC-EEECCCCc----CCccCHHHhcc
Confidence 56889999999999 477776 7999999999987543221 12222356677777 77765432 22223344677
Q ss_pred ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCC
Q 037108 82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKS 161 (239)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~ 161 (239)
+++|+.|+++.+..... ....+..+++|+.|++.++....+|. ..
T Consensus 132 l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~--------------------------~~ 176 (272)
T 3rfs_A 132 LTNLTYLNLAHNQLQSL---------PKGVFDKLTNLTELDLSYNQLQSLPE--------------------------GV 176 (272)
T ss_dssp CTTCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TT
T ss_pred CCCCCEEECCCCccCcc---------CHHHhccCccCCEEECCCCCcCccCH--------------------------HH
Confidence 88999999986643211 11234567899999999886544332 22
Q ss_pred CCcCCcccEEeeccCccccccccC---CCCcccEEEeccccccccccCCCCcccEEEecc
Q 037108 162 DEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQLLVSILSLPTLRKLTVNG 218 (239)
Q Consensus 162 ~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~i~~ 218 (239)
++.+++|++|+++++ .+++..|. .+++|++|++.+++- .+.+|.|+.+.+..
T Consensus 177 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~----~~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW----DCTCPGIRYLSEWI 231 (272)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB----CCCTTTTHHHHHHH
T ss_pred hcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCc----cccCcHHHHHHHHH
Confidence 356788888888876 56533332 468888888877642 13344455444443
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.24 E-value=1.8e-11 Score=106.60 Aligned_cols=217 Identities=17% Similarity=0.090 Sum_probs=113.9
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
+.+.+|++|++++| .++.+|..++++ +|++|++..+... .+.. ..+++|+ .+.+.+...... .....
T Consensus 279 ~~l~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n~~~---~l~~-~~l~~L~-~L~l~~n~~~~~------~~~~~ 345 (570)
T 2z63_A 279 NCLTNVSSFSLVSV-TIERVKDFSYNF-GWQHLELVNCKFG---QFPT-LKLKSLK-RLTFTSNKGGNA------FSEVD 345 (570)
T ss_dssp GGGTTCSEEEEESC-EECSCCBCCSCC-CCSEEEEESCBCS---SCCB-CBCSSCC-EEEEESCBSCCB------CCCCB
T ss_pred cCcCcccEEEecCc-cchhhhhhhccC-CccEEeeccCccc---ccCc-ccccccC-EEeCcCCccccc------ccccc
Confidence 35788999999998 478899999888 9999877544322 1111 3455566 666654332110 01144
Q ss_pred ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhh--------ccCcce-----eeeec
Q 037108 82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLS--------ITGDSL-----FSRYA 148 (239)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~--------l~~~~~-----~L~l~ 148 (239)
+++|+.|+++.+.... .......+...++|+.|++.++.....|..+.. +.+..- .-.+.
T Consensus 346 ~~~L~~L~l~~n~l~~-------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSF-------KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CTTCCEEECCSSCCBE-------EEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred CCCCCEEeCcCCccCc-------cccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhh
Confidence 5667777666432110 000011222344555555555433222211100 000000 00111
Q ss_pred cCCCceeeC---------CCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc--c-ccccCCCCcccE
Q 037108 149 RMGKWIPHG---------SGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--L-LVSILSLPTLRK 213 (239)
Q Consensus 149 ~~~~l~~~~---------~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~ 213 (239)
.+++++.+. .+..++.+++|++|++++|.--.+.+|. .+++|++|++++|.- + +..+..+++|++
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 222222221 1334566788888888877422234554 567888888887752 2 235667888888
Q ss_pred EEecccCccccccccccCccceEee
Q 037108 214 LTVNGCKEVVGRAINLSSSSSVVLW 238 (239)
Q Consensus 214 L~i~~c~~l~~~~~~~~~l~~L~~~ 238 (239)
|++++|.--...+..+..+++|+.+
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEE
Confidence 8888874333334445555555544
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.23 E-value=1.7e-11 Score=97.27 Aligned_cols=193 Identities=15% Similarity=0.054 Sum_probs=106.3
Q ss_pred ccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 5 IKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
.+|++|+++++ .++.+|. .++++++|++|++....-. ......++++++|+ .+++.+.. .....+..+.+++
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS-TLILTGNP----IQSLALGAFSGLS 100 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCC-EEECTTCC----CCEECTTTTTTCT
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCC-EEECCCCc----cCccChhhhcCCc
Confidence 35899999999 5788875 7889999999977543211 11122356666666 66654322 2222234566778
Q ss_pred ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC--ccchhhhccCcceeeeeccCCCceeeCCCCC
Q 037108 84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK--FAIYTLSITGDSLFSRYARMGKWIPHGSGKS 161 (239)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~ 161 (239)
+|+.|.+..+..... ....+..+++|+.|++.++.... +|.++..+..-. .+.+.+. .+.... +..
T Consensus 101 ~L~~L~l~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~-~L~Ls~N-~l~~~~-~~~ 168 (276)
T 2z62_A 101 SLQKLVAVETNLASL---------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSN-KIQSIY-CTD 168 (276)
T ss_dssp TCCEEECTTSCCCCS---------TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC-EEECCSS-CCCEEC-GGG
T ss_pred cccEEECCCCCcccc---------CchhcccCCCCCEEECcCCccceecCchhhccCCCCC-EEECCCC-CCCcCC-HHH
Confidence 888888875432211 01124566788999888876544 455432111000 0111111 011110 112
Q ss_pred CCcCCccc----EEeeccCccccccccC---CCCcccEEEecccc--cccc-ccCCCCcccEEEecc
Q 037108 162 DEGLADLR----ELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLV-SILSLPTLRKLTVNG 218 (239)
Q Consensus 162 ~~~~~~L~----~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~-~~~~l~~L~~L~i~~ 218 (239)
+..+++|+ +|+++++ .++ .++. ...+|++|+++++. .+.. .+..+++|++|++++
T Consensus 169 ~~~l~~L~~l~l~L~ls~n-~l~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLN-PMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp GHHHHTCTTCCEEEECCSS-CCC-EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred hhhhhhccccceeeecCCC-ccc-ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 23344444 6777765 454 3432 33478888888765 2222 346788899999884
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.23 E-value=4e-11 Score=109.33 Aligned_cols=72 Identities=15% Similarity=0.007 Sum_probs=47.5
Q ss_pred CcccEEeeccCccccccccC---CCCcccEEEeccccc--c-ccccCCCCcccEEEecccCccccccccccCccceEee
Q 037108 166 ADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--L-LVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLW 238 (239)
Q Consensus 166 ~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~~ 238 (239)
++|+.|+++++ .+.+..|. .+++|+.|++.++.- + ...+..+++|++|++++|.--...+..+..+++|+.+
T Consensus 266 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 266 SSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp SCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred CCccEEECCCC-cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 67888888766 44423332 578888888887652 2 2356778899999999886444445556666666554
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.23 E-value=1.4e-11 Score=107.29 Aligned_cols=73 Identities=19% Similarity=0.101 Sum_probs=41.2
Q ss_pred CcCCcccEEeeccCcccccccc-CCCCcccEEEeccccc--c---ccccCCCCcccEEEecccCccccccccccCccceE
Q 037108 163 EGLADLRELFLVSCSKLQRTLL-EYLPSLETLVIRKCEQ--L---LVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVV 236 (239)
Q Consensus 163 ~~~~~L~~L~l~~~~~L~~~~p-~~l~~L~~L~l~~c~~--l---~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~ 236 (239)
+.+++|++|++.++.. .+.++ ..+++|++|+++++.- . ...+..+++|++|++++|.-.... ..+..+++|+
T Consensus 322 ~~l~~L~~L~l~~n~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~ 399 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKG-GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLE 399 (570)
T ss_dssp CBCSSCCEEEEESCBS-CCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE-EEEETCTTCC
T ss_pred ccccccCEEeCcCCcc-ccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc-ccccccCCCC
Confidence 3566677777766532 22333 3577777777776652 1 234556788888888877533322 2244444444
Q ss_pred e
Q 037108 237 L 237 (239)
Q Consensus 237 ~ 237 (239)
.
T Consensus 400 ~ 400 (570)
T 2z63_A 400 H 400 (570)
T ss_dssp E
T ss_pred E
Confidence 3
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.22 E-value=1.3e-10 Score=98.94 Aligned_cols=200 Identities=16% Similarity=0.065 Sum_probs=107.5
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
+++.+|++|+++++ .++.+| +++++++|++|++....-.. + .++++++|+ .|++.+.. +... .+..
T Consensus 39 ~~l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~---~-~~~~l~~L~-~L~Ls~N~-l~~~------~~~~ 104 (457)
T 3bz5_A 39 EQLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITT---L-DLSQNTNLT-YLACDSNK-LTNL------DVTP 104 (457)
T ss_dssp HHHTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSC---C-CCTTCTTCS-EEECCSSC-CSCC------CCTT
T ss_pred hHcCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCe---E-ccccCCCCC-EEECcCCC-Ccee------ecCC
Confidence 45788999999998 588887 68999999999875543222 2 266677777 77765432 1111 2667
Q ss_pred ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccc-hhhhccCcceeeee-----------cc
Q 037108 82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAI-YTLSITGDSLFSRY-----------AR 149 (239)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~l~l~~~~~~L~l-----------~~ 149 (239)
+++|+.|+++.+.... + .+..+++|+.|++.++....++- .+..++ .+.+ ..
T Consensus 105 l~~L~~L~L~~N~l~~----------l--~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~----~L~l~~n~~~~~~~~~~ 168 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTK----------L--DVSQNPLLTYLNCARNTLTEIDVSHNTQLT----ELDCHLNKKITKLDVTP 168 (457)
T ss_dssp CTTCCEEECCSSCCSC----------C--CCTTCTTCCEEECTTSCCSCCCCTTCTTCC----EEECTTCSCCCCCCCTT
T ss_pred CCcCCEEECCCCcCCe----------e--cCCCCCcCCEEECCCCccceeccccCCcCC----EEECCCCCccccccccc
Confidence 7888888888654221 1 14456677777777665433320 000000 0111 11
Q ss_pred CCCceeeCC------CCCCCcCCcccEEeeccCcccccccc-CCCCcccEEEeccccccccccCCCCcccEEEecccCcc
Q 037108 150 MGKWIPHGS------GKSDEGLADLRELFLVSCSKLQRTLL-EYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEV 222 (239)
Q Consensus 150 ~~~l~~~~~------~~~~~~~~~L~~L~l~~~~~L~~~~p-~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~i~~c~~l 222 (239)
+++++.+.. ..+++.+++|+.|+++++ +++ .++ ..+++|++|+++++.--...+..+++|++|+++++.--
T Consensus 169 l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N-~l~-~~~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITELDVSQNKLLNRLNCDTN-NIT-KLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CTTCCEEECCSSCCCCCCCTTCTTCCEEECCSS-CCS-CCCCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCS
T ss_pred CCcCCEEECCCCccceeccccCCCCCEEECcCC-cCC-eeccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCC
Confidence 222222110 012444556666666544 343 222 24566666666655421112556677777777776432
Q ss_pred ccccccccCcc
Q 037108 223 VGRAINLSSSS 233 (239)
Q Consensus 223 ~~~~~~~~~l~ 233 (239)
...+..+++++
T Consensus 247 ~~~~~~l~~L~ 257 (457)
T 3bz5_A 247 ELDVSTLSKLT 257 (457)
T ss_dssp CCCCTTCTTCC
T ss_pred CcCHHHCCCCC
Confidence 22233444444
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.22 E-value=7.7e-11 Score=107.50 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=59.0
Q ss_pred CCCcccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhh--hcccccccceEEEEeccCCCChhHHHHh
Q 037108 1 MGNLIKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQ--LKSLIHLQGTVCISRLENVKEISAAKEA 77 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~--L~~L~~L~~~L~~~~~~~~~~~~~~~~~ 77 (239)
++++++||+|++++|. +..+ |..++++++|++|++..+.-.. ..+.. ++++++|+ .|++....-.. . ....
T Consensus 69 f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~L~~L~-~L~Ls~N~l~~-~--~~~~ 142 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSD-AVLKDGYFRNLKALT-RLDLSKNQIRS-L--YLHP 142 (844)
T ss_dssp TSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSS-CCSTTCCCSSCSSCC-EEEEESCCCCC-C--CCCG
T ss_pred hcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCc-ccccCccccccCCCC-EEECCCCcccc-c--ccch
Confidence 4678999999999995 6665 7889999999999876543221 12222 66777777 78776543211 1 1113
Q ss_pred ccCcccccccceeEEcCC
Q 037108 78 QLNGKRNLKDLLLEWNNS 95 (239)
Q Consensus 78 ~l~~l~~L~~L~l~~~~~ 95 (239)
.+.++++|+.|+++.+..
T Consensus 143 ~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 143 SFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp GGGTCSSCCEEEEESSCC
T ss_pred hHhhCCCCCEEECCCCcC
Confidence 466778888888876543
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.22 E-value=1.2e-11 Score=106.04 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=37.3
Q ss_pred cccCcEEeCCCCCCCcccC-ccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEE
Q 037108 4 LIKLHHLNNPSTDSLEEMP-QGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCIS 63 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~ 63 (239)
.++|++|++++|. +..+| ..++++++|++|++..+... .+..++.+++|+ .|++.
T Consensus 33 ~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~l~~l~~L~-~L~Ls 88 (487)
T 3oja_A 33 AWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLY---ETLDLESLSTLR-TLDLN 88 (487)
T ss_dssp GGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCE---EEEECTTCTTCC-EEECC
T ss_pred CCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCC---CCcccccCCCCC-EEEec
Confidence 4589999999994 77765 67999999999987543211 112256666666 66654
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.22 E-value=8.3e-11 Score=100.08 Aligned_cols=55 Identities=16% Similarity=0.064 Sum_probs=35.6
Q ss_pred CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEE
Q 037108 1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCIS 63 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~ 63 (239)
++++++|++|++++| .++.+| ++++++|++|++....-.. + .++++++|+ .+.+.
T Consensus 81 ~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N~l~~---l-~~~~l~~L~-~L~l~ 135 (457)
T 3bz5_A 81 LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTK---L-DVSQNPLLT-YLNCA 135 (457)
T ss_dssp CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSSCCSC---C-CCTTCTTCC-EEECT
T ss_pred cccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCCCcCCe---e-cCCCCCcCC-EEECC
Confidence 467788888888888 477776 7888888888765432211 1 245555555 55543
No 64
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.21 E-value=6e-11 Score=105.58 Aligned_cols=51 Identities=24% Similarity=0.201 Sum_probs=29.8
Q ss_pred ccEEeeccCccccccccC---CCCcccEEEecccccc---ccccCCCCcccEEEeccc
Q 037108 168 LRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQL---LVSILSLPTLRKLTVNGC 219 (239)
Q Consensus 168 L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~l---~~~~~~l~~L~~L~i~~c 219 (239)
|++|+++++ ++++..|. .+++|++|+++++.-- +..+..+++|+.|++.++
T Consensus 250 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 250 LTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp CCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred CCEEECCCC-CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 777777665 34422222 4567777777665421 124566777777777654
No 65
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.21 E-value=7.7e-11 Score=96.00 Aligned_cols=218 Identities=15% Similarity=0.083 Sum_probs=115.9
Q ss_pred CCCcccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108 1 MGNLIKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL 79 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 79 (239)
++++++|++|++++| .++.+ |..++++++|++|++....-.. ....+. ++|+ .+++.+.. ........+
T Consensus 74 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~--~~L~-~L~l~~n~----i~~~~~~~~ 143 (332)
T 2ft3_A 74 FKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVE--IPPNLP--SSLV-ELRIHDNR----IRKVPKGVF 143 (332)
T ss_dssp TTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCS--CCSSCC--TTCC-EEECCSSC----CCCCCSGGG
T ss_pred hhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCc--cCcccc--ccCC-EEECCCCc----cCccCHhHh
Confidence 467889999999999 47776 6789999999999875432111 011111 3444 55543322 111122335
Q ss_pred CcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchh------hhccCcce--e--eeecc
Q 037108 80 NGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYT------LSITGDSL--F--SRYAR 149 (239)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~------l~l~~~~~--~--L~l~~ 149 (239)
.++++|+.|+++.+.... .......+... +|+.|++.++....+|..+ +.+.+..- . -.+..
T Consensus 144 ~~l~~L~~L~l~~n~l~~-------~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 215 (332)
T 2ft3_A 144 SGLRNMNCIEMGGNPLEN-------SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLR 215 (332)
T ss_dssp SSCSSCCEEECCSCCCBG-------GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTT
T ss_pred CCCccCCEEECCCCcccc-------CCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcC
Confidence 566677777776443210 00001112222 4444444443333332211 00000000 0 01122
Q ss_pred CCCceeeC---------CCCCCCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc--ccc-ccC------CC
Q 037108 150 MGKWIPHG---------SGKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--LLV-SIL------SL 208 (239)
Q Consensus 150 ~~~l~~~~---------~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l~~-~~~------~l 208 (239)
+++++.+. .+..++.+++|++|+++++ +++ .+|. .+++|++|+++++.- +.. .+. .+
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 293 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR 293 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSS
T ss_pred CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccc
Confidence 22332221 0224667899999999987 676 7775 578999999988652 211 121 25
Q ss_pred CcccEEEecccCcc--ccccccccCccceEee
Q 037108 209 PTLRKLTVNGCKEV--VGRAINLSSSSSVVLW 238 (239)
Q Consensus 209 ~~L~~L~i~~c~~l--~~~~~~~~~l~~L~~~ 238 (239)
++|+.+.+.+++-. ...+..+..+++|+.+
T Consensus 294 ~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp CCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred ccccceEeecCcccccccCcccccccchhhhh
Confidence 78999999998855 4555666666666554
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.20 E-value=6.4e-11 Score=91.98 Aligned_cols=176 Identities=15% Similarity=0.083 Sum_probs=110.7
Q ss_pred CCCcccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108 1 MGNLIKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL 79 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 79 (239)
++++++|++|++++|..++.+|. .++++++|++|++..+..........+..+++|+ .+.+.+..- ... + .+
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~-~L~l~~n~l-~~l----p-~~ 123 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK-FLGIFNTGL-KMF----P-DL 123 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC-EEEEEEECC-CSC----C-CC
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC-EEeCCCCCC-ccc----c-cc
Confidence 35789999999999954888886 6899999999988763332222233456677777 888865432 111 1 15
Q ss_pred Ccccccc---cceeEEc-CCCCCCCCCcchHHHh-hcCCCCCCcc-eEEEeccCCCCccchhhhccCcceeeeeccCCCc
Q 037108 80 NGKRNLK---DLLLEWN-NSTSNIREPETDTCVL-DLLKPHQSLK-KLKINGYGGTKFAIYTLSITGDSLFSRYARMGKW 153 (239)
Q Consensus 80 ~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~-~~l~~~~~L~-~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l 153 (239)
..+++|+ .|+++.+ ... .+. ..+..+++|+ .+++.++....+|...
T Consensus 124 ~~l~~L~~L~~L~l~~N~~l~----------~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~------------------ 175 (239)
T 2xwt_C 124 TKVYSTDIFFILEITDNPYMT----------SIPVNAFQGLCNETLTLKLYNNGFTSVQGYA------------------ 175 (239)
T ss_dssp TTCCBCCSEEEEEEESCTTCC----------EECTTTTTTTBSSEEEEECCSCCCCEECTTT------------------
T ss_pred ccccccccccEEECCCCcchh----------hcCcccccchhcceeEEEcCCCCCcccCHhh------------------
Confidence 5566666 8888855 211 111 2345567899 9999887554444321
Q ss_pred eeeCCCCCCCcCCcccEEeeccCccccccccC----CC-CcccEEEecccccccc-ccCCCCcccEEEecccCcc
Q 037108 154 IPHGSGKSDEGLADLRELFLVSCSKLQRTLLE----YL-PSLETLVIRKCEQLLV-SILSLPTLRKLTVNGCKEV 222 (239)
Q Consensus 154 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~----~l-~~L~~L~l~~c~~l~~-~~~~l~~L~~L~i~~c~~l 222 (239)
+. .++|++|++++++.++ .+|. .+ ++|+.|+++++. +.. ....+++|+.|.+.++..|
T Consensus 176 --------~~-~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 176 --------FN-GTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp --------TT-TCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC---
T ss_pred --------cC-CCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCccCC
Confidence 12 2678888888775565 5542 35 788888887743 322 1225788888888877653
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.17 E-value=5e-11 Score=95.46 Aligned_cols=193 Identities=14% Similarity=0.037 Sum_probs=112.2
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
+++.+++.++++++ .++.+|.++. +++++|++..... .......+.++++|+ .|.+.... +. .. .....
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l-~~~~~~~~~~l~~L~-~L~L~~n~-l~---~~--~~~~~ 75 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLL-YTFSLATLMPYTRLT-QLNLDRAE-LT---KL--QVDGT 75 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCC-SEEEGGGGTTCTTCC-EEECTTSC-CC---EE--ECCSC
T ss_pred cccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcC-CccCHHHhhcCCCCC-EEECCCCc-cC---cc--cCCCC
Confidence 57888999999998 5899998875 6888887643221 111223466777777 67664322 11 11 11256
Q ss_pred ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccc-hhhhccCcceeeeeccCCCceeeCCCC
Q 037108 82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAI-YTLSITGDSLFSRYARMGKWIPHGSGK 160 (239)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~l~l~~~~~~L~l~~~~~l~~~~~~~ 160 (239)
+++|+.|+++.+... .++..+..+++|+.|+++++....+|. .+..+..- ..|.+.+. ++... .+.
T Consensus 76 l~~L~~L~Ls~N~l~----------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-~~L~L~~N-~l~~~-~~~ 142 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQ----------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGN-ELKTL-PPG 142 (290)
T ss_dssp CTTCCEEECCSSCCS----------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTS-CCCCC-CTT
T ss_pred CCcCCEEECCCCcCC----------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-CEEECCCC-CCCcc-Chh
Confidence 778999988865422 233345567789999998887665542 22110000 01222111 11111 022
Q ss_pred CCCcCCcccEEeeccCccccccccC----CCCcccEEEecccc--ccccccCCCCcccEEEecccC
Q 037108 161 SDEGLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCK 220 (239)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~ 220 (239)
.+..+++|+.|+++++ +++ .+|. .+++|+.|+++++. .++..+...++|+.+.+.+++
T Consensus 143 ~~~~l~~L~~L~L~~N-~l~-~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANN-NLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTCTTCCEEECTTS-CCS-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred hcccccCCCEEECCCC-cCC-ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 3456778888888765 565 5543 46778888887654 344455566778888887543
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.17 E-value=4.1e-11 Score=103.93 Aligned_cols=189 Identities=16% Similarity=0.103 Sum_probs=101.6
Q ss_pred ccCcEEeCCCCCCCcccCccC-CCCccCCccCceEeccCCCCC---hhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108 5 IKLHHLNNPSTDSLEEMPQGI-GKLTSLRTMCKFVVGNEIGSG---LRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN 80 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP~~i-~~L~~L~~L~~~~~~~~~~~~---i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~ 80 (239)
.+|++|++++| .++.+|..+ +++++|++|++...... +.. ...++.+++|+ .+++.+.. ..... .....+.
T Consensus 310 ~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~l~~L~-~L~Ls~N~-l~~~~-~~~~~~~ 384 (549)
T 2z81_A 310 EKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMV-EEYLKNSACKGAWPSLQ-TLVLSQNH-LRSMQ-KTGEILL 384 (549)
T ss_dssp TTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCC-HHHHHHHTCTTSSTTCC-EEECTTSC-CCCHH-HHHHHGG
T ss_pred ccceEEEeccC-ccccCCHHHHhcCccccEEEccCCccc-cccccchhhhhccccCc-EEEccCCc-ccccc-cchhhhh
Confidence 45777777777 477788776 46888888876433211 001 11245566666 66654322 11111 1113356
Q ss_pred cccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhh-hccCcceeeeeccCCCceeeCCC
Q 037108 81 GKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTL-SITGDSLFSRYARMGKWIPHGSG 159 (239)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l-~l~~~~~~L~l~~~~~l~~~~~~ 159 (239)
.+++|+.|+++.+... .+++.+..+++|+.|+++++....+|..+. .+. .+.+.+. ++.
T Consensus 385 ~l~~L~~L~Ls~N~l~----------~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~----~L~Ls~N-~l~----- 444 (549)
T 2z81_A 385 TLKNLTSLDISRNTFH----------PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE----VLDVSNN-NLD----- 444 (549)
T ss_dssp GCTTCCEEECTTCCCC----------CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCS----EEECCSS-CCS-----
T ss_pred cCCCCCEEECCCCCCc----------cCChhhcccccccEEECCCCCcccccchhcCCce----EEECCCC-Chh-----
Confidence 6677888877754321 233445556778888887776544443210 000 1222221 111
Q ss_pred CCCCcCCcccEEeeccCccccccccC--CCCcccEEEeccccc--c-ccccCCCCcccEEEecccC
Q 037108 160 KSDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCEQ--L-LVSILSLPTLRKLTVNGCK 220 (239)
Q Consensus 160 ~~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~L~i~~c~ 220 (239)
...+.+++|++|+++++ +++ .+|. .+++|+.|+++++.- + +..+..+++|++|++++++
T Consensus 445 ~~~~~l~~L~~L~Ls~N-~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 445 SFSLFLPRLQELYISRN-KLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCCCCCTTCCEEECCSS-CCS-SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred hhcccCChhcEEECCCC-ccC-cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 11245677777777766 565 5654 467777777776541 1 1235567777777777655
No 69
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.14 E-value=1.3e-10 Score=101.32 Aligned_cols=190 Identities=15% Similarity=0.038 Sum_probs=110.0
Q ss_pred cCcEEeCCCCCCCcccCccC-----CCCccCCccCceEeccCCC-CChhhh----------------------ccccccc
Q 037108 6 KLHHLNNPSTDSLEEMPQGI-----GKLTSLRTMCKFVVGNEIG-SGLRQL----------------------KSLIHLQ 57 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~i-----~~L~~L~~L~~~~~~~~~~-~~i~~L----------------------~~L~~L~ 57 (239)
+|++|++++|...+.+|..+ ++|+.|+.++.......-+ ..+..+ +.+++|+
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~ 356 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCce
Confidence 78999999985334899887 6666666554332211000 000001 3444555
Q ss_pred ceEEEEeccCCCChhHHHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC-ccchhh
Q 037108 58 GTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK-FAIYTL 136 (239)
Q Consensus 58 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~l 136 (239)
.+++.+.. ..+..+..+.++++|+.|+++.+... .....+..+..+++|+.|+++++.... +|...
T Consensus 357 -~L~l~~n~----l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~- 423 (562)
T 3a79_B 357 -FLNFTQNV----FTDSVFQGCSTLKRLQTLILQRNGLK-------NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT- 423 (562)
T ss_dssp -EEECCSSC----CCTTTTTTCCSCSSCCEEECCSSCCC-------BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC-
T ss_pred -EEECCCCc----cccchhhhhcccCCCCEEECCCCCcC-------CcccchhhhcCCCCCCEEECCCCcCCCccChhh-
Confidence 55543322 22233455667778888887754321 112334456667788888888776544 44321
Q ss_pred hccCcceeeeeccCCCceeeCC------CCCCCcC-CcccEEeeccCccccccccC---CCCcccEEEecccc--ccccc
Q 037108 137 SITGDSLFSRYARMGKWIPHGS------GKSDEGL-ADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLVS 204 (239)
Q Consensus 137 ~l~~~~~~L~l~~~~~l~~~~~------~~~~~~~-~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~~ 204 (239)
+..+++++.+.. ......+ ++|++|+++++ +++ .+|. .+++|++|+++++. .++..
T Consensus 424 ----------~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 424 ----------CAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIM-SIPKDVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp ----------CCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCC-CCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred ----------hcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCc-ccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence 112222222210 0111223 69999999987 776 7775 57899999998865 34333
Q ss_pred -cCCCCcccEEEecccC
Q 037108 205 -ILSLPTLRKLTVNGCK 220 (239)
Q Consensus 205 -~~~l~~L~~L~i~~c~ 220 (239)
+..+++|+++++++++
T Consensus 492 ~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp STTTCTTCCCEECCSCC
T ss_pred HHhcCCCCCEEEecCCC
Confidence 6788999999999865
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.14 E-value=1.6e-10 Score=93.19 Aligned_cols=201 Identities=16% Similarity=0.069 Sum_probs=111.9
Q ss_pred cccCcEEeCCCCCCCcccCccC--CCCccCCccCceEeccCCC-CCh--hhhcccccccceEEEEeccCCCChhHHHHhc
Q 037108 4 LIKLHHLNNPSTDSLEEMPQGI--GKLTSLRTMCKFVVGNEIG-SGL--RQLKSLIHLQGTVCISRLENVKEISAAKEAQ 78 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~lP~~i--~~L~~L~~L~~~~~~~~~~-~~i--~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~ 78 (239)
+.+|++|++++|...+..|..+ +++++|++|++........ ..+ ..+..+++|+ .|.+.+..- ....+..
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l----~~~~~~~ 164 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLK-VLSIAQAHS----PAFSCEQ 164 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCC-EEEEECCSS----CCCCTTS
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCC-EEEeeCCCc----chhhHHH
Confidence 3569999999996445677777 9999999998865443221 112 2334677777 788765432 2233356
Q ss_pred cCcccccccceeEEcCCCCCCCCCcchHHHhhc--CCCCCCcceEEEeccCCCCccchhhhc-cCcce--eeeeccCCCc
Q 037108 79 LNGKRNLKDLLLEWNNSTSNIREPETDTCVLDL--LKPHQSLKKLKINGYGGTKFAIYTLSI-TGDSL--FSRYARMGKW 153 (239)
Q Consensus 79 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~p~~~l~l-~~~~~--~L~l~~~~~l 153 (239)
+..+++|+.|+++.+.. .....+... ...+++|+.|++.++....++.....+ .+... .|.+.+. .+
T Consensus 165 ~~~l~~L~~L~Ls~N~l-------~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l 236 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPG-------LGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SL 236 (310)
T ss_dssp CCCCTTCCEEECCSCTT-------CHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CC
T ss_pred hccCCCCCEEECCCCCC-------ccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CC
Confidence 67788999999986532 111222222 245678999999988665444321000 00000 0122111 01
Q ss_pred eeeCCCCCCCcC---CcccEEeeccCccccccccC-CCCcccEEEeccccccc-cccCCCCcccEEEecccC
Q 037108 154 IPHGSGKSDEGL---ADLRELFLVSCSKLQRTLLE-YLPSLETLVIRKCEQLL-VSILSLPTLRKLTVNGCK 220 (239)
Q Consensus 154 ~~~~~~~~~~~~---~~L~~L~l~~~~~L~~~~p~-~l~~L~~L~l~~c~~l~-~~~~~l~~L~~L~i~~c~ 220 (239)
... .|..++.+ ++|++|+++++ +++ .+|. .+++|++|+++++.--. .....+++|++|++++++
T Consensus 237 ~~~-~p~~~~~~~~~~~L~~L~Ls~N-~l~-~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 237 RAT-VNPSAPRCMWSSALNSLNLSFA-GLE-QVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCC-CCSCCSSCCCCTTCCCEECCSS-CCC-SCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred Ccc-chhhHHhccCcCcCCEEECCCC-CCC-chhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence 111 02223333 57777777755 565 5554 34677777776654211 234566777777776643
No 71
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.14 E-value=2e-10 Score=100.97 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=22.8
Q ss_pred CCcccCcEEeCCCCCCCcccCcc-CCCCccCCccCce
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCKF 37 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~~ 37 (239)
+++++||+|++++| .++.+|++ +++|++|++|++.
T Consensus 73 ~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 73 FSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp TTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECT
T ss_pred hCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEcc
Confidence 45667777777777 46666543 6677777777653
No 72
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.14 E-value=3.5e-10 Score=92.90 Aligned_cols=86 Identities=15% Similarity=0.080 Sum_probs=55.0
Q ss_pred ccCcEEeCCCCCCCcccCcc-CCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 5 IKLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
.++++|++++| .++.+|.+ +++|++|++|++.............+.+++++. .+.......+. ...+..+..++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~-~~l~~~~N~l~---~l~~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH-EIRIEKANNLL---YINPEAFQNLP 104 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC-EEEEEEETTCC---EECTTSBCCCT
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh-hhhcccCCccc---ccCchhhhhcc
Confidence 57999999999 59999975 799999999988654321111112244555555 44443333322 22334567788
Q ss_pred ccccceeEEcCC
Q 037108 84 NLKDLLLEWNNS 95 (239)
Q Consensus 84 ~L~~L~l~~~~~ 95 (239)
+|+.|.++.+..
T Consensus 105 ~L~~L~l~~n~l 116 (350)
T 4ay9_X 105 NLQYLLISNTGI 116 (350)
T ss_dssp TCCEEEEEEECC
T ss_pred cccccccccccc
Confidence 899999987653
No 73
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.13 E-value=2e-10 Score=91.94 Aligned_cols=163 Identities=20% Similarity=0.247 Sum_probs=98.5
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK 82 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 82 (239)
++.+|++|++++| .++.+| +++++++|++|++....- ..+..+.++++|+ .|.+.+.. +.. ...+..+
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~l---~~~~~l~~l~~L~-~L~l~~n~-l~~-----~~~l~~l 111 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKL---TDIKPLANLKNLG-WLFLDENK-VKD-----LSSLKDL 111 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCC---CCCGGGTTCTTCC-EEECCSSC-CCC-----GGGGTTC
T ss_pred hcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCcc---CCCcccccCCCCC-EEECCCCc-CCC-----ChhhccC
Confidence 4678999999999 588887 489999999998754332 2233377777777 77765432 221 1236778
Q ss_pred cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108 83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD 162 (239)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~ 162 (239)
++|+.|+++.+.... +..+..+++|+.|++.++....++. +
T Consensus 112 ~~L~~L~L~~n~i~~-----------~~~l~~l~~L~~L~l~~n~l~~~~~----------------------------l 152 (291)
T 1h6t_A 112 KKLKSLSLEHNGISD-----------INGLVHLPQLESLYLGNNKITDITV----------------------------L 152 (291)
T ss_dssp TTCCEEECTTSCCCC-----------CGGGGGCTTCCEEECCSSCCCCCGG----------------------------G
T ss_pred CCCCEEECCCCcCCC-----------ChhhcCCCCCCEEEccCCcCCcchh----------------------------h
Confidence 889999888654221 1234556789999998875443321 2
Q ss_pred CcCCcccEEeeccCcccccccc--CCCCcccEEEecccc--ccccccCCCCcccEEEeccc
Q 037108 163 EGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGC 219 (239)
Q Consensus 163 ~~~~~L~~L~l~~~~~L~~~~p--~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c 219 (239)
+.+++|++|++++| +++ .++ ..+++|+.|+++++. .+ ..+..+++|+.|+++++
T Consensus 153 ~~l~~L~~L~L~~N-~l~-~~~~l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 153 SRLTKLDTLSLEDN-QIS-DIVPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQ 210 (291)
T ss_dssp GGCTTCSEEECCSS-CCC-CCGGGTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEE
T ss_pred ccCCCCCEEEccCC-ccc-cchhhcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCC
Confidence 33555666666554 333 221 145556666665543 22 13445556666666554
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.13 E-value=4e-11 Score=95.13 Aligned_cols=178 Identities=14% Similarity=0.087 Sum_probs=107.7
Q ss_pred CCCcccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108 1 MGNLIKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL 79 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 79 (239)
++++.+|++|++++| .+..+|. .++++++|++|++....- .......+.++++|+ .+.+.+.. ........+
T Consensus 48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~l~~n~----l~~~~~~~~ 120 (276)
T 2z62_A 48 FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQ-KLVAVETN----LASLENFPI 120 (276)
T ss_dssp TTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCC-EEECTTSC----CCCSTTCCC
T ss_pred hccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCcc-CccChhhhcCCcccc-EEECCCCC----ccccCchhc
Confidence 357899999999999 5788875 689999999998754321 111223456667777 77664332 111222347
Q ss_pred CcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc-chhhhccCcce---eeeeccCCCcee
Q 037108 80 NGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA-IYTLSITGDSL---FSRYARMGKWIP 155 (239)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~l~l~~~~~---~L~l~~~~~l~~ 155 (239)
..+++|+.|+++.+.... ..++..+..+++|+.|+++++....++ ..+..+..-.. .+.+.+. .+..
T Consensus 121 ~~l~~L~~L~l~~n~l~~--------~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~ 191 (276)
T 2z62_A 121 GHLKTLKELNVAHNLIQS--------FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNF 191 (276)
T ss_dssp TTCTTCCEEECCSSCCCC--------CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCE
T ss_pred ccCCCCCEEECcCCccce--------ecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC-cccc
Confidence 778899999998654321 112344556789999999988765544 22211110000 0111111 1112
Q ss_pred eCCCCCCCcCCcccEEeeccCccccccccC----CCCcccEEEeccc
Q 037108 156 HGSGKSDEGLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKC 198 (239)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c 198 (239)
. +.......+|++|+++++ +++ .+|. .+++|+.|++++.
T Consensus 192 ~--~~~~~~~~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 192 I--QPGAFKEIRLKELALDTN-QLK-SVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp E--CTTSSCSCCEEEEECCSS-CCS-CCCTTTTTTCCSCCEEECCSS
T ss_pred c--CccccCCCcccEEECCCC-cee-ecCHhHhcccccccEEEccCC
Confidence 2 223334558999999987 576 5543 5789999999853
No 75
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.13 E-value=1.3e-10 Score=102.01 Aligned_cols=164 Identities=19% Similarity=0.233 Sum_probs=97.0
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK 82 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 82 (239)
.|.+|++|++++| .+..+| +++++++|++|++..+.. ..+..+.++++|+ .|.+.... +.. ...+..+
T Consensus 41 ~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l---~~~~~l~~l~~L~-~L~Ls~N~-l~~-----l~~l~~l 108 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKL---TDIKPLTNLKNLG-WLFLDENK-IKD-----LSSLKDL 108 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCC---CCCGGGGGCTTCC-EEECCSSC-CCC-----CTTSTTC
T ss_pred cCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCC---CCChhhccCCCCC-EEECcCCC-CCC-----ChhhccC
Confidence 4778999999998 588887 589999999998754322 2233367777777 77765432 111 1256778
Q ss_pred cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108 83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD 162 (239)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~ 162 (239)
++|+.|+++.+.... +..+..+++|+.|+++++....++. +
T Consensus 109 ~~L~~L~Ls~N~l~~-----------l~~l~~l~~L~~L~Ls~N~l~~l~~----------------------------l 149 (605)
T 1m9s_A 109 KKLKSLSLEHNGISD-----------INGLVHLPQLESLYLGNNKITDITV----------------------------L 149 (605)
T ss_dssp TTCCEEECTTSCCCC-----------CGGGGGCTTCSEEECCSSCCCCCGG----------------------------G
T ss_pred CCCCEEEecCCCCCC-----------CccccCCCccCEEECCCCccCCchh----------------------------h
Confidence 888888888554221 1335556789999988875443321 2
Q ss_pred CcCCcccEEeeccCcccccccc-CCCCcccEEEecccc--ccccccCCCCcccEEEeccc
Q 037108 163 EGLADLRELFLVSCSKLQRTLL-EYLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGC 219 (239)
Q Consensus 163 ~~~~~L~~L~l~~~~~L~~~~p-~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c 219 (239)
+.+++|+.|++++| .+.+..| ..+++|+.|++++|. .+ ..+..+++|+.|++.+|
T Consensus 150 ~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 150 SRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp GSCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSE
T ss_pred cccCCCCEEECcCC-cCCCchhhccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCC
Confidence 23555555555544 3332212 134555555555543 12 23445555555555554
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.12 E-value=4.9e-10 Score=98.63 Aligned_cols=69 Identities=20% Similarity=0.163 Sum_probs=36.7
Q ss_pred CCcccEEeeccCccccccccCCCCcccEEEeccccccccccCCCCcccEEEecccCccccccccccCccceEe
Q 037108 165 LADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVL 237 (239)
Q Consensus 165 ~~~L~~L~l~~~~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~ 237 (239)
+++|++|+++++ +++ .+|..+++|++|+++++ .+...-..+++|+.|++++| ++..+|..+.++++|+.
T Consensus 220 ~~~L~~L~Ls~N-~L~-~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 220 PSGLKELIVSGN-RLT-SLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETT 288 (622)
T ss_dssp CTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCCSCCGGGGGSCTTCE
T ss_pred CCCCCEEEccCC-ccC-cCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCC-CCCcCCHHHhhccccCE
Confidence 356666666654 554 45555666666666654 23221124556666666665 34444544555544443
No 77
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.11 E-value=2.4e-10 Score=93.86 Aligned_cols=203 Identities=13% Similarity=0.113 Sum_probs=119.0
Q ss_pred CCCcccCcEEeCCCCCCCcccCcc-CCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108 1 MGNLIKLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL 79 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 79 (239)
++++++|++|++++| .++.+|.+ ++++++|++|++....-........++++++|+ .+++.+..... ...+..+
T Consensus 96 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~-~L~l~~n~~~~---~~~~~~~ 170 (353)
T 2z80_A 96 FSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ-ILRVGNMDTFT---KIQRKDF 170 (353)
T ss_dssp TTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC-EEEEEESSSCC---EECTTTT
T ss_pred cCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc-EEECCCCcccc---ccCHHHc
Confidence 457899999999999 58899977 899999999987543322111112466777788 88887653222 2223456
Q ss_pred CcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhh-ccCcceeeeeccCCCceeeCC
Q 037108 80 NGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLS-ITGDSLFSRYARMGKWIPHGS 158 (239)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~-l~~~~~~L~l~~~~~l~~~~~ 158 (239)
.++++|+.|+++.+.... ..+..+..+++|+.|++.++....+|..+.. ... -..+.+.+. .+.....
T Consensus 171 ~~l~~L~~L~l~~n~l~~---------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~L~~n-~l~~~~~ 239 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQS---------YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS-VECLELRDT-DLDTFHF 239 (353)
T ss_dssp TTCCEEEEEEEEETTCCE---------ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTT-EEEEEEESC-BCTTCCC
T ss_pred cCCCCCCEEECCCCCcCc---------cCHHHHhccccCCeecCCCCccccchhhhhhhccc-ccEEECCCC-ccccccc
Confidence 778899999999765321 1234556678899999988876555543211 000 001222111 0000000
Q ss_pred --CCCCCcCCcccEEeeccCccccc----cccC---CCCcccEEEecccc--ccccc-cCCCCcccEEEecccC
Q 037108 159 --GKSDEGLADLRELFLVSCSKLQR----TLLE---YLPSLETLVIRKCE--QLLVS-ILSLPTLRKLTVNGCK 220 (239)
Q Consensus 159 --~~~~~~~~~L~~L~l~~~~~L~~----~~p~---~l~~L~~L~l~~c~--~l~~~-~~~l~~L~~L~i~~c~ 220 (239)
.......+.++.+++.++ .+.+ .+|. .+++|++|+++++. .++.. +..+++|++|++++++
T Consensus 240 ~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp C------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 001123455666666654 3321 2332 57888888888765 33333 3677888888888764
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.09 E-value=5.6e-10 Score=87.33 Aligned_cols=168 Identities=20% Similarity=0.204 Sum_probs=90.7
Q ss_pred cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108 6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL 85 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L 85 (239)
..++++++++ .++.+|.++. .++++|++....- .......++++++|+ .|.+.+.. .....+..+..+++|
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~l~~L 85 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGL-ATLSDATFRGLTKLT-WLNLDYNQ----LQTLSAGVFDDLTEL 85 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCC-CCCCTTTTTTCTTCC-EEECTTSC----CCCCCTTTTTTCTTC
T ss_pred CCeEEecCCC-CccccCCCCC--CCCCEEEccCCCc-CccCHhHhcCcccCC-EEECCCCc----CCccCHhHhccCCcC
Confidence 4677888887 5788887776 5777776643221 112223455666666 66654322 122223445667778
Q ss_pred ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcC
Q 037108 86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGL 165 (239)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~ 165 (239)
+.|+++.+..... ....+..+++|+.|++.++....+|.. .++.+
T Consensus 86 ~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------------~~~~l 130 (251)
T 3m19_A 86 GTLGLANNQLASL---------PLGVFDHLTQLDKLYLGGNQLKSLPSG--------------------------VFDRL 130 (251)
T ss_dssp CEEECTTSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCTT--------------------------TTTTC
T ss_pred CEEECCCCccccc---------ChhHhcccCCCCEEEcCCCcCCCcChh--------------------------HhccC
Confidence 8888775432210 112334567888888877754443321 12345
Q ss_pred CcccEEeeccCccccccccC----CCCcccEEEecccc--ccc-cccCCCCcccEEEeccc
Q 037108 166 ADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE--QLL-VSILSLPTLRKLTVNGC 219 (239)
Q Consensus 166 ~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~--~l~-~~~~~l~~L~~L~i~~c 219 (239)
++|++|+++++ +++ .+|. .+++|+.|+++++. .+. ..+..+++|++|++.++
T Consensus 131 ~~L~~L~Ls~N-~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 131 TKLKELRLNTN-QLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp TTCCEEECCSS-CCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CcccEEECcCC-cCC-ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 66666666654 444 3322 34566666665543 111 13445566666666654
No 79
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.09 E-value=6.3e-11 Score=100.75 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=8.4
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEe
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVV 39 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~ 39 (239)
+..+||+|+++++. ++++|++|++|++|++|++..+
T Consensus 9 ~~~~L~~L~l~~n~-l~~iP~~i~~L~~L~~L~l~~n 44 (454)
T 1jl5_A 9 SNTFLQEPLRHSSN-LTEMPVEAENVKSKTEYYNAWS 44 (454)
T ss_dssp --------------------------CCHHHHHHHHH
T ss_pred ccccchhhhcccCc-hhhCChhHhcccchhhhhccCC
Confidence 35788999999984 7899999999999999876543
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.07 E-value=2.6e-10 Score=92.04 Aligned_cols=181 Identities=14% Similarity=0.007 Sum_probs=103.1
Q ss_pred CCcccCcEEeCCCCCCCcc-cC----ccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHH-
Q 037108 2 GNLIKLHHLNNPSTDSLEE-MP----QGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAK- 75 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~-lP----~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~- 75 (239)
+++.+|++|++++|. +.. .| ..++.+++|++|++....- .......++.+++|+ .|++.+..-. ......
T Consensus 114 ~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~-~L~Ls~N~l~-~~~~~~~ 189 (310)
T 4glp_A 114 ATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQVRAFPALT-SLDLSDNPGL-GERGLMA 189 (310)
T ss_dssp CCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSCCCCTTCC-EEECCSCTTC-HHHHHHT
T ss_pred ccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHHhccCCCCC-EEECCCCCCc-cchhhhH
Confidence 568899999999985 553 33 3456788999998755432 222334566777777 7776543311 011111
Q ss_pred HhccCcccccccceeEEcCCCCCCCCCcchHHHhhc-CCCCCCcceEEEeccCCCCc-cchhhhccCcce--eeeeccCC
Q 037108 76 EAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDL-LKPHQSLKKLKINGYGGTKF-AIYTLSITGDSL--FSRYARMG 151 (239)
Q Consensus 76 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~-p~~~l~l~~~~~--~L~l~~~~ 151 (239)
...+..+++|+.|.++.+... ........ +..+++|+.|+++++..... |..+....+... .|.+.+.
T Consensus 190 ~~~~~~l~~L~~L~Ls~N~l~-------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N- 261 (310)
T 4glp_A 190 ALCPHKFPAIQNLALRNTGME-------TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA- 261 (310)
T ss_dssp TSCTTSSCCCCSCBCCSSCCC-------CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-
T ss_pred HHhhhcCCCCCEEECCCCCCC-------chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-
Confidence 122357788999998865421 11122112 23457899999988765554 433211110000 1222211
Q ss_pred CceeeCCCCCCCcCCcccEEeeccCccccc-cccCCCCcccEEEecccc
Q 037108 152 KWIPHGSGKSDEGLADLRELFLVSCSKLQR-TLLEYLPSLETLVIRKCE 199 (239)
Q Consensus 152 ~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~-~~p~~l~~L~~L~l~~c~ 199 (239)
.+.. .|. +.+++|++|+++++ ++++ ..+..+++|+.|++++.+
T Consensus 262 ~l~~--lp~--~~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 262 GLEQ--VPK--GLPAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCS--CCS--CCCSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred CCCc--hhh--hhcCCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 1111 122 23589999999977 6763 234578999999998754
No 81
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.06 E-value=6e-10 Score=99.10 Aligned_cols=183 Identities=11% Similarity=0.003 Sum_probs=89.7
Q ss_pred CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccccceeEEcCCCCCCCC
Q 037108 22 PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIRE 101 (239)
Q Consensus 22 P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 101 (239)
|..++++++|++|++.............++.+++|+ .+.+.... ........+..+++|+.|.+..+...
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~~~~~L~~L~l~~n~l~----- 467 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF-EIYLSYNK----YLQLTRNSFALVPSLQRLMLRRVALK----- 467 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCC-EEECCSCS----EEECCTTTTTTCTTCCEEECTTSCCB-----
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCccccc-EEecCCCC----cceeChhhhhcCcccccchhcccccc-----
Confidence 345556666666654322111001112344444444 44443221 11111223444556666665533210
Q ss_pred CcchHHHhhcCCCCCCcceEEEeccCCCCccch-hhhccCcceeeeeccCCCceeeC---CC----CCCCcCCcccEEee
Q 037108 102 PETDTCVLDLLKPHQSLKKLKINGYGGTKFAIY-TLSITGDSLFSRYARMGKWIPHG---SG----KSDEGLADLRELFL 173 (239)
Q Consensus 102 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~l~l~~~~~~L~l~~~~~l~~~~---~~----~~~~~~~~L~~L~l 173 (239)
.....+..+..+++|+.|++.++....+|.. +..+..- ..+.+.+. .+..+. .+ ..++.+++|++|++
T Consensus 468 --~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 468 --NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-EILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp --CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred --ccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc-CEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEEC
Confidence 0112234455667788888877765554432 2110000 01222221 011110 01 12567889999999
Q ss_pred ccCccccccccC----CCCcccEEEecccc--cccc-ccCCCCcccEEEecccC
Q 037108 174 VSCSKLQRTLLE----YLPSLETLVIRKCE--QLLV-SILSLPTLRKLTVNGCK 220 (239)
Q Consensus 174 ~~~~~L~~~~p~----~l~~L~~L~l~~c~--~l~~-~~~~l~~L~~L~i~~c~ 220 (239)
+++ +++ .+|. .+++|+.|+++++. .++. .+..+++|++|+++++.
T Consensus 544 ~~N-~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 544 ESN-GFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp CSS-CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCC-CCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCc
Confidence 876 665 6653 56888889887654 2322 34678899999999874
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.05 E-value=9.5e-10 Score=87.99 Aligned_cols=171 Identities=16% Similarity=0.004 Sum_probs=102.4
Q ss_pred ccCcEEeCCCCCCCcccC-ccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 5 IKLHHLNNPSTDSLEEMP-QGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
.++++|++++|. ++.++ ..++++++|++|++....- ..+...+.+++|+ .|++.+..- . ..+..+..++
T Consensus 31 ~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~l~~L~-~L~Ls~N~l-~----~l~~~~~~l~ 100 (290)
T 1p9a_G 31 KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLG-TLDLSHNQL-Q----SLPLLGQTLP 100 (290)
T ss_dssp TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCC---CEEECCSCCTTCC-EEECCSSCC-S----SCCCCTTTCT
T ss_pred CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCcc---CcccCCCCCCcCC-EEECCCCcC-C----cCchhhccCC
Confidence 578999999994 67764 6789999999997743221 1222235566666 676654321 1 2234566778
Q ss_pred ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchh-hhccCcceeeeeccCCCceeeCCCCCC
Q 037108 84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYT-LSITGDSLFSRYARMGKWIPHGSGKSD 162 (239)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~-l~l~~~~~~L~l~~~~~l~~~~~~~~~ 162 (239)
+|+.|+++.+..... ....+..+++|+.|++.++....+|... ..+..- ..|.+.+. ++..+. +..+
T Consensus 101 ~L~~L~l~~N~l~~l---------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N-~l~~l~-~~~~ 168 (290)
T 1p9a_G 101 ALTVLDVSFNRLTSL---------PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL-EKLSLANN-NLTELP-AGLL 168 (290)
T ss_dssp TCCEEECCSSCCCCC---------CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECTTS-CCSCCC-TTTT
T ss_pred CCCEEECCCCcCccc---------CHHHHcCCCCCCEEECCCCCCCccChhhcccccCC-CEEECCCC-cCCccC-HHHh
Confidence 899998886543211 1133556678999999888766655422 100000 01222211 111111 2234
Q ss_pred CcCCcccEEeeccCccccccccC---CCCcccEEEecccc
Q 037108 163 EGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE 199 (239)
Q Consensus 163 ~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~ 199 (239)
..+++|++|+++++ +++ .+|. ..++|+.+.+.+.+
T Consensus 169 ~~l~~L~~L~L~~N-~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 169 NGLENLDTLLLQEN-SLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCTTCCEEECCSS-CCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred cCcCCCCEEECCCC-cCC-ccChhhcccccCCeEEeCCCC
Confidence 67899999999976 676 7775 45789999998644
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.05 E-value=1.8e-11 Score=101.86 Aligned_cols=89 Identities=13% Similarity=-0.009 Sum_probs=45.1
Q ss_pred CcccCcEEeCCCCCCCcc-----cCccCCCCccCCccCceEeccC--CCCChhh-------hcccccccceEEEEeccCC
Q 037108 3 NLIKLHHLNNPSTDSLEE-----MPQGIGKLTSLRTMCKFVVGNE--IGSGLRQ-------LKSLIHLQGTVCISRLENV 68 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~-----lP~~i~~L~~L~~L~~~~~~~~--~~~~i~~-------L~~L~~L~~~L~~~~~~~~ 68 (239)
.+++|++|++++|. ++. ++..+.++++|++|++..+... .+..+.. +.++++|+ .|.+.+..-.
T Consensus 30 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~-~L~Ls~n~l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH-TVRLSDNAFG 107 (386)
T ss_dssp HCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC-EEECCSCCCC
T ss_pred cCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc-EEECCCCcCC
Confidence 35667777777773 443 3445667777777766443211 1111111 24556666 6665443211
Q ss_pred CChhHHHHhccCcccccccceeEEc
Q 037108 69 KEISAAKEAQLNGKRNLKDLLLEWN 93 (239)
Q Consensus 69 ~~~~~~~~~~l~~l~~L~~L~l~~~ 93 (239)
.......+..+..+++|+.|+++.+
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCC
Confidence 1111123344555667777777644
No 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.03 E-value=2.3e-10 Score=97.22 Aligned_cols=201 Identities=15% Similarity=0.040 Sum_probs=98.9
Q ss_pred CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEecc-------CCCCChhhhcc-cccccceEEEEeccCCCChh
Q 037108 1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGN-------EIGSGLRQLKS-LIHLQGTVCISRLENVKEIS 72 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~-------~~~~~i~~L~~-L~~L~~~L~~~~~~~~~~~~ 72 (239)
|++|++|++|++++|...+.+|.+++++++|+++++..+.. ..+..+..+.. .++|+ .+++.+.. ..
T Consensus 30 i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L~-~L~l~~n~-l~--- 104 (454)
T 1jl5_A 30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLE-SLVASCNS-LT--- 104 (454)
T ss_dssp ----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTCS-EEECCSSC-CS---
T ss_pred HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCCC-EEEccCCc-CC---
Confidence 57899999999999965558999999999885543322110 01111111111 13444 55543221 11
Q ss_pred HHHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCC-CCCcceEEEeccCCCCccchhhhccCcceeeeeccCC
Q 037108 73 AAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKP-HQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMG 151 (239)
Q Consensus 73 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~ 151 (239)
. .+. ..++|+.|+++.+... .+.. +++|+.|++.++....+|+ +..+..- ..+.+.+.
T Consensus 105 ~-lp~---~~~~L~~L~l~~n~l~--------------~l~~~~~~L~~L~L~~n~l~~lp~-~~~l~~L-~~L~l~~N- 163 (454)
T 1jl5_A 105 E-LPE---LPQSLKSLLVDNNNLK--------------ALSDLPPLLEYLGVSNNQLEKLPE-LQNSSFL-KIIDVDNN- 163 (454)
T ss_dssp S-CCC---CCTTCCEEECCSSCCS--------------CCCSCCTTCCEEECCSSCCSSCCC-CTTCTTC-CEEECCSS-
T ss_pred c-ccc---ccCCCcEEECCCCccC--------------cccCCCCCCCEEECcCCCCCCCcc-cCCCCCC-CEEECCCC-
Confidence 1 111 1256777777644321 1111 2578888888776555553 1110000 01222111
Q ss_pred CceeeCCCCCCCcCCcccEEeeccCccccccccC--CCCcccEEEeccccccccccCCCCcccEEEecccCccccccccc
Q 037108 152 KWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRAINL 229 (239)
Q Consensus 152 ~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~i~~c~~l~~~~~~~ 229 (239)
.+..+ + ..+++|++|+++++ +++ .+|. .+++|++|++.++. +...-...++|++|++++|. +...+ .+
T Consensus 164 ~l~~l--p---~~~~~L~~L~L~~n-~l~-~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~-l~~lp-~~ 233 (454)
T 1jl5_A 164 SLKKL--P---DLPPSLEFIAAGNN-QLE-ELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNI-LEELP-EL 233 (454)
T ss_dssp CCSCC--C---CCCTTCCEEECCSS-CCS-SCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSC-CSSCC-CC
T ss_pred cCccc--C---CCcccccEEECcCC-cCC-cCccccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCc-CCccc-cc
Confidence 01110 1 12457777777766 555 4553 56777777777654 21211223578888888873 33444 24
Q ss_pred cCccceEe
Q 037108 230 SSSSSVVL 237 (239)
Q Consensus 230 ~~l~~L~~ 237 (239)
..+++|+.
T Consensus 234 ~~l~~L~~ 241 (454)
T 1jl5_A 234 QNLPFLTT 241 (454)
T ss_dssp TTCTTCCE
T ss_pred CCCCCCCE
Confidence 45555544
No 85
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.03 E-value=7.5e-11 Score=95.54 Aligned_cols=189 Identities=16% Similarity=0.018 Sum_probs=98.9
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
+++++|++|++++| .+..+|+ ++++++|++|++... .+.++...++|+ .+.+.+..- ... ....
T Consensus 55 ~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n------~l~~l~~~~~L~-~L~l~~n~l----~~~---~~~~ 118 (317)
T 3o53_A 55 APFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNN------YVQELLVGPSIE-TLHAANNNI----SRV---SCSR 118 (317)
T ss_dssp TTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSS------EEEEEEECTTCC-EEECCSSCC----SEE---EECC
T ss_pred hCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCC------ccccccCCCCcC-EEECCCCcc----CCc---Cccc
Confidence 57899999999999 4777775 999999999987432 334444445555 555533221 111 1122
Q ss_pred ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc-chhh-hccCcceeeeeccCCCceeeCCC
Q 037108 82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA-IYTL-SITGDSLFSRYARMGKWIPHGSG 159 (239)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~l-~l~~~~~~L~l~~~~~l~~~~~~ 159 (239)
+++|+.|+++.+.... .....+..+++|+.|+++++.....+ ..+. .+.. -..|.+.+. .+..+
T Consensus 119 ~~~L~~L~l~~N~l~~---------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~-L~~L~L~~N-~l~~~--- 184 (317)
T 3o53_A 119 GQGKKNIYLANNKITM---------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-LEHLNLQYN-FIYDV--- 184 (317)
T ss_dssp CSSCEEEECCSSCCCS---------GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT-CCEEECTTS-CCCEE---
T ss_pred cCCCCEEECCCCCCCC---------ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc-CCEEECCCC-cCccc---
Confidence 4567777766443211 01112333467777777766544322 2110 0000 001222211 11111
Q ss_pred CCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--ccccccCCCCcccEEEecccCcc
Q 037108 160 KSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCKEV 222 (239)
Q Consensus 160 ~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~~l 222 (239)
+....+++|++|+++++ +++ .+|. .+++|+.|+++++. .++..+..+++|+.|++++++-.
T Consensus 185 ~~~~~l~~L~~L~Ls~N-~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 185 KGQVVFAKLKTLDLSSN-KLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECCCCCTTCCEEECCSS-CCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ccccccccCCEEECCCC-cCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 11223677777777765 454 3332 45677777776654 23334556677777777765543
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.03 E-value=1.1e-11 Score=103.01 Aligned_cols=210 Identities=16% Similarity=0.085 Sum_probs=109.3
Q ss_pred CCCcccCcEEeCCCCCCCc----ccCccC-------CCCccCCccCceEeccCCC---CChhhhcccccccceEEEEecc
Q 037108 1 MGNLIKLHHLNNPSTDSLE----EMPQGI-------GKLTSLRTMCKFVVGNEIG---SGLRQLKSLIHLQGTVCISRLE 66 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~----~lP~~i-------~~L~~L~~L~~~~~~~~~~---~~i~~L~~L~~L~~~L~~~~~~ 66 (239)
+.++++|++|++++|. +. .+|.++ .++++|++|++..+..... .....+.++++|+ .|.+.+..
T Consensus 56 l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~-~L~L~~n~ 133 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE-HLYLHNNG 133 (386)
T ss_dssp TTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCC-EEECCSSC
T ss_pred HHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCC-EEECcCCC
Confidence 3578999999999973 33 456555 7899999998765432211 1123467777777 77765433
Q ss_pred CCCChhHHHHhccCcc---------cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC------c
Q 037108 67 NVKEISAAKEAQLNGK---------RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK------F 131 (239)
Q Consensus 67 ~~~~~~~~~~~~l~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~ 131 (239)
-...........+..+ ++|+.|.++.+... ......+...+...++|+.|.+.++.... .
T Consensus 134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~ 208 (386)
T 2ca6_A 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE-----NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT-----GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC-----cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHH
Confidence 1000011122223334 78999998865421 11223333455556799999998875431 1
Q ss_pred cchhhhccCcceeeeeccCCCcee---eCCCCCCCcCCcccEEeeccCcccccc----ccC-----CCCcccEEEecccc
Q 037108 132 AIYTLSITGDSLFSRYARMGKWIP---HGSGKSDEGLADLRELFLVSCSKLQRT----LLE-----YLPSLETLVIRKCE 199 (239)
Q Consensus 132 p~~~l~l~~~~~~L~l~~~~~l~~---~~~~~~~~~~~~L~~L~l~~~~~L~~~----~p~-----~l~~L~~L~l~~c~ 199 (239)
|.++.....- ..|.+.+.. +.. ...+..+..+++|++|++++|. +.+. +|. .+++|++|++++|.
T Consensus 209 ~~~l~~~~~L-~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 209 LEGLAYCQEL-KVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HTTGGGCTTC-CEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHHhhcCCCc-cEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 1111000000 001221110 000 0001123456777777777663 4322 222 26777777777665
Q ss_pred c-------ccccc-CCCCcccEEEecccC
Q 037108 200 Q-------LLVSI-LSLPTLRKLTVNGCK 220 (239)
Q Consensus 200 ~-------l~~~~-~~l~~L~~L~i~~c~ 220 (239)
- ++..+ ..+++|++|++++|+
T Consensus 286 i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 286 IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 2 22233 346777777777764
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.02 E-value=1.8e-09 Score=88.67 Aligned_cols=199 Identities=15% Similarity=0.069 Sum_probs=114.8
Q ss_pred CCCcccCcEEeCCCCCCCcccCcc-CCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhcc
Q 037108 1 MGNLIKLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQL 79 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l 79 (239)
+++|++|++|++++|...+.+|.+ +.+|++++++...............++.+++|+ .+.+.+..-.. .. ....
T Consensus 50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~-~L~l~~n~l~~-~~---~~~~ 124 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ-YLLISNTGIKH-LP---DVHK 124 (350)
T ss_dssp STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC-EEEEEEECCSS-CC---CCTT
T ss_pred HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc-ccccccccccc-CC---chhh
Confidence 357899999999999544667754 688888887644433332222234467777787 78876543211 11 1112
Q ss_pred CcccccccceeEEcCCCCCCCCCcchHHHh-hcCCC-CCCcceEEEeccCCCCccchhhhccCcce-eeeeccCCCceee
Q 037108 80 NGKRNLKDLLLEWNNSTSNIREPETDTCVL-DLLKP-HQSLKKLKINGYGGTKFAIYTLSITGDSL-FSRYARMGKWIPH 156 (239)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~l~~-~~~L~~L~l~~~~~~~~p~~~l~l~~~~~-~L~l~~~~~l~~~ 156 (239)
....++..+.+..+... ..+. ..+.. ...++.|++.++....+|..... +..- .+.+.+...+..+
T Consensus 125 ~~~~~l~~l~l~~~~~i---------~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~--~~~L~~l~l~~~n~l~~i 193 (350)
T 4ay9_X 125 IHSLQKVLLDIQDNINI---------HTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN--GTQLDELNLSDNNNLEEL 193 (350)
T ss_dssp CCBSSCEEEEEESCTTC---------CEECTTSSTTSBSSCEEEECCSSCCCEECTTSST--TEEEEEEECTTCTTCCCC
T ss_pred cccchhhhhhhcccccc---------ccccccchhhcchhhhhhccccccccCCChhhcc--ccchhHHhhccCCcccCC
Confidence 22234445555422111 0011 11122 24678888888766555543200 0000 1233333333333
Q ss_pred CCCCCCCcCCcccEEeeccCccccccccC-CCCcccEEEecccccccc--ccCCCCcccEEEecc
Q 037108 157 GSGKSDEGLADLRELFLVSCSKLQRTLLE-YLPSLETLVIRKCEQLLV--SILSLPTLRKLTVNG 218 (239)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~~~~L~~~~p~-~l~~L~~L~l~~c~~l~~--~~~~l~~L~~L~i~~ 218 (239)
. +..++.+++|++|+++++ +++ .+|. .|.+|+.|++.++.+++. .+..+++|+.+++.+
T Consensus 194 ~-~~~f~~l~~L~~LdLs~N-~l~-~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 194 P-NDVFHGASGPVILDISRT-RIH-SLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp C-TTTTTTEECCSEEECTTS-CCC-CCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred C-HHHhccCcccchhhcCCC-CcC-ccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 1 234577899999999976 787 7765 688999999988887743 456788888888864
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.02 E-value=8.5e-11 Score=100.82 Aligned_cols=190 Identities=16% Similarity=0.005 Sum_probs=110.0
Q ss_pred CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108 1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN 80 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~ 80 (239)
++++++|++|++++|. +..+|+ ++++++|++|++..+ .+..+...++|+ .|.+.+..- . ... ..
T Consensus 54 ~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N------~l~~l~~~~~L~-~L~L~~N~l-~---~~~---~~ 117 (487)
T 3oja_A 54 LAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN------YVQELLVGPSIE-TLHAANNNI-S---RVS---CS 117 (487)
T ss_dssp GTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS------EEEEEEECTTCC-EEECCSSCC-C---CEE---EC
T ss_pred HhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC------cCCCCCCCCCcC-EEECcCCcC-C---CCC---cc
Confidence 3678999999999994 776665 999999999987432 334444445666 666543221 1 111 12
Q ss_pred cccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCc-cchhh-hccCcceeeeeccCCCceeeCC
Q 037108 81 GKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKF-AIYTL-SITGDSLFSRYARMGKWIPHGS 158 (239)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~l-~l~~~~~~L~l~~~~~l~~~~~ 158 (239)
.+++|+.|+++.+.... .....+..+++|+.|+++++..... |..+. .+..- ..|.+.+.. +...
T Consensus 118 ~l~~L~~L~L~~N~l~~---------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-~~L~Ls~N~-l~~~-- 184 (487)
T 3oja_A 118 RGQGKKNIYLANNKITM---------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYNF-IYDV-- 184 (487)
T ss_dssp CCSSCEEEECCSSCCCS---------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTSC-CCEE--
T ss_pred ccCCCCEEECCCCCCCC---------CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-cEEecCCCc-cccc--
Confidence 34667777777554221 1122334456788888877654432 32221 00000 012222211 1111
Q ss_pred CCCCCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--ccccccCCCCcccEEEecccCcc
Q 037108 159 GKSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCKEV 222 (239)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~~l 222 (239)
+....+++|++|+++++ .+. .+|. .+++|+.|+++++. .++..+..+++|+.|++.+++-.
T Consensus 185 -~~~~~l~~L~~L~Ls~N-~l~-~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 185 -KGQVVFAKLKTLDLSSN-KLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -ECCCCCTTCCEEECCSS-CCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred -cccccCCCCCEEECCCC-CCC-CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 12334788888888876 565 3432 56788888888765 34445667788888888887644
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.00 E-value=1.7e-09 Score=86.60 Aligned_cols=145 Identities=21% Similarity=0.236 Sum_probs=100.8
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
+.+++|++|++++| .++.+|. ++++++|++|++....- ..+..++++++|+ .|++.+.. +... ..+..
T Consensus 65 ~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l---~~~~~l~~l~~L~-~L~L~~n~-i~~~-----~~l~~ 132 (291)
T 1h6t_A 65 QYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKV---KDLSSLKDLKKLK-SLSLEHNG-ISDI-----NGLVH 132 (291)
T ss_dssp GGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC---CCGGGGTTCTTCC-EEECTTSC-CCCC-----GGGGG
T ss_pred hcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcC---CCChhhccCCCCC-EEECCCCc-CCCC-----hhhcC
Confidence 56889999999999 5888987 99999999998754332 3456677888888 77775432 2211 34667
Q ss_pred ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCC
Q 037108 82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKS 161 (239)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~ 161 (239)
+++|+.|+++.+.... +..+..+++|+.|+++++.....+.
T Consensus 133 l~~L~~L~l~~n~l~~-----------~~~l~~l~~L~~L~L~~N~l~~~~~---------------------------- 173 (291)
T 1h6t_A 133 LPQLESLYLGNNKITD-----------ITVLSRLTKLDTLSLEDNQISDIVP---------------------------- 173 (291)
T ss_dssp CTTCCEEECCSSCCCC-----------CGGGGGCTTCSEEECCSSCCCCCGG----------------------------
T ss_pred CCCCCEEEccCCcCCc-----------chhhccCCCCCEEEccCCccccchh----------------------------
Confidence 7899999998664321 1345567899999999875443332
Q ss_pred CCcCCcccEEeeccCccccccccC--CCCcccEEEecccc
Q 037108 162 DEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCE 199 (239)
Q Consensus 162 ~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~ 199 (239)
+..+++|++|+++++ .++ .+|. .+++|+.|++++++
T Consensus 174 l~~l~~L~~L~L~~N-~i~-~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKN-HIS-DLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GTTCTTCCEEECCSS-CCC-BCGGGTTCTTCSEEEEEEEE
T ss_pred hcCCCccCEEECCCC-cCC-CChhhccCCCCCEEECcCCc
Confidence 245778888888766 454 4442 57788888887765
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.97 E-value=1.9e-09 Score=94.66 Aligned_cols=146 Identities=21% Similarity=0.235 Sum_probs=100.3
Q ss_pred CCCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108 1 MGNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN 80 (239)
Q Consensus 1 i~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~ 80 (239)
++++.+|++|++++| .+..+|+ ++++++|++|++..+.- ..+..+..+++|+ .|.+.... +... ..+.
T Consensus 61 l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l---~~l~~l~~l~~L~-~L~Ls~N~-l~~l-----~~l~ 128 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKI---KDLSSLKDLKKLK-SLSLEHNG-ISDI-----NGLV 128 (605)
T ss_dssp GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCC---CCCTTSTTCTTCC-EEECTTSC-CCCC-----GGGG
T ss_pred HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCC---CCChhhccCCCCC-EEEecCCC-CCCC-----cccc
Confidence 357899999999999 5888887 99999999998755432 2344677777777 77765433 1111 3467
Q ss_pred cccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCC
Q 037108 81 GKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGK 160 (239)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~ 160 (239)
.+++|+.|.++.+.... +..+..+++|+.|+++++.....+.
T Consensus 129 ~l~~L~~L~Ls~N~l~~-----------l~~l~~l~~L~~L~Ls~N~l~~~~~--------------------------- 170 (605)
T 1m9s_A 129 HLPQLESLYLGNNKITD-----------ITVLSRLTKLDTLSLEDNQISDIVP--------------------------- 170 (605)
T ss_dssp GCTTCSEEECCSSCCCC-----------CGGGGSCTTCSEEECCSSCCCCCGG---------------------------
T ss_pred CCCccCEEECCCCccCC-----------chhhcccCCCCEEECcCCcCCCchh---------------------------
Confidence 78899999998664321 1345667899999999875443322
Q ss_pred CCCcCCcccEEeeccCccccccccC--CCCcccEEEecccc
Q 037108 161 SDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCE 199 (239)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~ 199 (239)
+..+++|+.|++++| .+. .+|. .+++|+.|++.+|+
T Consensus 171 -l~~l~~L~~L~Ls~N-~i~-~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKN-HIS-DLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -GTTCTTCCEEECCSS-CCC-BCGGGTTCTTCSEEECCSEE
T ss_pred -hccCCCCCEEECcCC-CCC-CChHHccCCCCCEEEccCCc
Confidence 245777777887766 454 3442 56777777777665
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.94 E-value=3.6e-09 Score=82.71 Aligned_cols=151 Identities=19% Similarity=0.155 Sum_probs=99.9
Q ss_pred ccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 5 IKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
.++++|+++++. +..++. .++++++|++|++....- .......+.++++|+ .|.+.+.. ........+..++
T Consensus 35 ~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELG-TLGLANNQ----LASLPLGVFDHLT 107 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCC-EEECTTSC----CCCCCTTTTTTCT
T ss_pred CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcC-CccCHhHhccCCcCC-EEECCCCc----ccccChhHhcccC
Confidence 469999999994 777764 689999999998754322 122223366677777 77764432 2222334567788
Q ss_pred ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCC
Q 037108 84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDE 163 (239)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~ 163 (239)
+|+.|+++.+..... ....+..+++|+.|++.++....+|. ..++
T Consensus 108 ~L~~L~L~~N~l~~~---------~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------------~~~~ 152 (251)
T 3m19_A 108 QLDKLYLGGNQLKSL---------PSGVFDRLTKLKELRLNTNQLQSIPA--------------------------GAFD 152 (251)
T ss_dssp TCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TTTT
T ss_pred CCCEEEcCCCcCCCc---------ChhHhccCCcccEEECcCCcCCccCH--------------------------HHcC
Confidence 999999986643211 01224557899999999876544432 2345
Q ss_pred cCCcccEEeeccCccccccccC----CCCcccEEEecccc
Q 037108 164 GLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE 199 (239)
Q Consensus 164 ~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~ 199 (239)
.+++|++|+++++ +++ .+|. .+++|+.|++.+++
T Consensus 153 ~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 153 KLTNLQTLSLSTN-QLQ-SVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSS-CCS-CCCTTTTTTCTTCCEEECCSCC
T ss_pred cCcCCCEEECCCC-cCC-ccCHHHHhCCCCCCEEEeeCCc
Confidence 6889999999876 565 4432 57889999988654
No 92
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.90 E-value=4.6e-08 Score=86.15 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=37.4
Q ss_pred CCcccEEeeccCccccccccCCCCcccEEEeccccccccccCCCCcccEEEecccCccccccccccCccceEe
Q 037108 165 LADLRELFLVSCSKLQRTLLEYLPSLETLVIRKCEQLLVSILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVL 237 (239)
Q Consensus 165 ~~~L~~L~l~~~~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~ 237 (239)
+++|+.|++.++ .++ .+|..+++|++|+++++ .+...-..+++|++|++++| ++..++..+.+++.|.+
T Consensus 200 ~~~L~~L~L~~N-~l~-~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~L 268 (622)
T 3g06_A 200 PSELYKLWAYNN-RLT-SLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSV 268 (622)
T ss_dssp CTTCCEEECCSS-CCS-SCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEEC
T ss_pred cchhhEEECcCC-ccc-ccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeC
Confidence 345555555544 343 45545566666666654 23222245567777777776 45555555555555543
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.88 E-value=2.2e-10 Score=94.52 Aligned_cols=227 Identities=13% Similarity=0.032 Sum_probs=116.2
Q ss_pred CcccCcEEeCCCCCCCcccC-----ccCCCCc-cCCccCceEeccCCCCChhhhccc-----ccccceEEEEeccCCCCh
Q 037108 3 NLIKLHHLNNPSTDSLEEMP-----QGIGKLT-SLRTMCKFVVGNEIGSGLRQLKSL-----IHLQGTVCISRLENVKEI 71 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP-----~~i~~L~-~L~~L~~~~~~~~~~~~i~~L~~L-----~~L~~~L~~~~~~~~~~~ 71 (239)
...+|++|++++|. ++..+ ..+.++. +|++|++..+.- .......+..+ ++|+ .|++.+..-....
T Consensus 20 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~-~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 20 IPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSL-GFKNSDELVQILAAIPANVT-SLNLSGNFLSYKS 96 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCG-GGSCHHHHHHHHHTSCTTCC-EEECCSSCGGGSC
T ss_pred CCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCC-CHHHHHHHHHHHhccCCCcc-EEECcCCcCChHH
Confidence 34569999999994 78777 5677888 899998755432 22233334443 6677 7776544311111
Q ss_pred hHHHHhccCcc-cccccceeEEcCCCCCCCCCcchHHHhhcCCC-CCCcceEEEeccCCCC-----ccchhhhccCccee
Q 037108 72 SAAKEAQLNGK-RNLKDLLLEWNNSTSNIREPETDTCVLDLLKP-HQSLKKLKINGYGGTK-----FAIYTLSITGDSLF 144 (239)
Q Consensus 72 ~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~-----~p~~~l~l~~~~~~ 144 (239)
.......+... ++|+.|+++++... ......+...+.. ..+|+.|+++++.... ++.++......-..
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~-----~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFS-----SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGG-----GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCC-----cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 12222234444 68888888866421 1122333334444 3588888888765331 11111000000001
Q ss_pred eeeccCCCceeeCC---CCCCCcC-CcccEEeeccCccccc----cccC----CCCcccEEEeccccc-------ccccc
Q 037108 145 SRYARMGKWIPHGS---GKSDEGL-ADLRELFLVSCSKLQR----TLLE----YLPSLETLVIRKCEQ-------LLVSI 205 (239)
Q Consensus 145 L~l~~~~~l~~~~~---~~~~~~~-~~L~~L~l~~~~~L~~----~~p~----~l~~L~~L~l~~c~~-------l~~~~ 205 (239)
|.+.++ .+..... ......+ ++|++|+++++ .+.+ .++. ..++|++|+++++.- +...+
T Consensus 172 L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 172 LNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249 (362)
T ss_dssp EECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred eeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence 222221 0100000 0011123 47888888866 4542 1332 135788888877641 11234
Q ss_pred CCCCcccEEEecccC-------ccccccccccCccceEeeC
Q 037108 206 LSLPTLRKLTVNGCK-------EVVGRAINLSSSSSVVLWD 239 (239)
Q Consensus 206 ~~l~~L~~L~i~~c~-------~l~~~~~~~~~l~~L~~~~ 239 (239)
..+++|++|++++|. .+...+..+..+++|+.+|
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~Ld 290 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEe
Confidence 567778888888775 1334444556666666554
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.88 E-value=7.6e-09 Score=77.85 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=8.1
Q ss_pred CCCCCCcceEEEecc
Q 037108 112 LKPHQSLKKLKINGY 126 (239)
Q Consensus 112 l~~~~~L~~L~l~~~ 126 (239)
+..+++|+.|++.++
T Consensus 84 l~~l~~L~~L~l~~n 98 (197)
T 4ezg_A 84 ISGLSNLERLRIMGK 98 (197)
T ss_dssp GTTCTTCCEEEEECT
T ss_pred hhcCCCCCEEEeECC
Confidence 334455666666554
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.87 E-value=1.3e-09 Score=85.86 Aligned_cols=143 Identities=19% Similarity=0.199 Sum_probs=70.8
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK 82 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 82 (239)
++.+|++|++++| .++.+| +++++++|++|++....- ..+..++++++|+ .|.+.+..- .... .+..
T Consensus 39 ~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i---~~~~~l~~l~~L~-~L~L~~N~l-~~l~-----~~~~- 105 (263)
T 1xeu_A 39 ELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQI---SDLSPLKDLTKLE-ELSVNRNRL-KNLN-----GIPS- 105 (263)
T ss_dssp HHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCC---CCCGGGTTCSSCC-EEECCSSCC-SCCT-----TCCC-
T ss_pred hcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCcc---CCChhhccCCCCC-EEECCCCcc-CCcC-----cccc-
Confidence 3566777777776 466666 566677777766543221 1122245555555 555433211 1110 1111
Q ss_pred cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108 83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD 162 (239)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~ 162 (239)
++|+.|+++.+.... ++.+..+++|+.|+++++....++ .+
T Consensus 106 ~~L~~L~L~~N~l~~-----------~~~l~~l~~L~~L~Ls~N~i~~~~----------------------------~l 146 (263)
T 1xeu_A 106 ACLSRLFLDNNELRD-----------TDSLIHLKNLEILSIRNNKLKSIV----------------------------ML 146 (263)
T ss_dssp SSCCEEECCSSCCSB-----------SGGGTTCTTCCEEECTTSCCCBCG----------------------------GG
T ss_pred CcccEEEccCCccCC-----------ChhhcCcccccEEECCCCcCCCCh----------------------------HH
Confidence 456666655432110 123444556666666555332221 12
Q ss_pred CcCCcccEEeeccCcccccccc--CCCCcccEEEecccc
Q 037108 163 EGLADLRELFLVSCSKLQRTLL--EYLPSLETLVIRKCE 199 (239)
Q Consensus 163 ~~~~~L~~L~l~~~~~L~~~~p--~~l~~L~~L~l~~c~ 199 (239)
+.+++|++|+++++ .+. .++ ..+++|+.|++++++
T Consensus 147 ~~l~~L~~L~L~~N-~i~-~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 147 GFLSKLEVLDLHGN-EIT-NTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GGCTTCCEEECTTS-CCC-BCTTSTTCCCCCEEEEEEEE
T ss_pred ccCCCCCEEECCCC-cCc-chHHhccCCCCCEEeCCCCc
Confidence 34667777777765 443 222 146677777776654
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.85 E-value=1.5e-09 Score=94.93 Aligned_cols=54 Identities=26% Similarity=0.390 Sum_probs=28.2
Q ss_pred CCcccEEeeccCccccc-c---ccCCCCcccEEEeccccccc-----cccCCCCcccEEEecccC
Q 037108 165 LADLRELFLVSCSKLQR-T---LLEYLPSLETLVIRKCEQLL-----VSILSLPTLRKLTVNGCK 220 (239)
Q Consensus 165 ~~~L~~L~l~~~~~L~~-~---~p~~l~~L~~L~l~~c~~l~-----~~~~~l~~L~~L~i~~c~ 220 (239)
+++|++|++++| .+.+ . +...+++|++|++++|+ +. .....+++|++|++++|.
T Consensus 462 ~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 462 SPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 455666666544 2321 1 11245666666666665 22 122356666666666665
No 97
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.82 E-value=2.4e-11 Score=105.95 Aligned_cols=177 Identities=15% Similarity=0.099 Sum_probs=100.1
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEecc------------CCCCChhhhcccccccceEEEEeccCCC
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGN------------EIGSGLRQLKSLIHLQGTVCISRLENVK 69 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~------------~~~~~i~~L~~L~~L~~~L~~~~~~~~~ 69 (239)
...++|+.|+++++ .++.+|++|+++++|+.|++..... ..+.....++++++|+ .++........
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~-~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK-AVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHH-HHCGGGHHHHH
T ss_pred ccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcc-cCcchhhcccc
Confidence 45788999999999 5899999999999999998522110 0111112233344333 22210000000
Q ss_pred ChhH--HHHhccCc--ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceee
Q 037108 70 EISA--AKEAQLNG--KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFS 145 (239)
Q Consensus 70 ~~~~--~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L 145 (239)
.... .....+.. ...|+.|+++.+.... ++ .+..+++|+.|+++++....+|.
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~----------lp-~~~~l~~L~~L~Ls~N~l~~lp~------------ 480 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV----------LC-HLEQLLLVTHLDLSHNRLRALPP------------ 480 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS----------CC-CGGGGTTCCEEECCSSCCCCCCG------------
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC----------Cc-CccccccCcEeecCcccccccch------------
Confidence 0000 00000111 0135555555332110 11 13344566666666654444443
Q ss_pred eeccCCCceeeCCCCCCCcCCcccEEeeccCccccccccC--CCCcccEEEecccc--cc--ccccCCCCcccEEEeccc
Q 037108 146 RYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCE--QL--LVSILSLPTLRKLTVNGC 219 (239)
Q Consensus 146 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~--~l--~~~~~~l~~L~~L~i~~c 219 (239)
.++.+++|+.|+++++ +++ .+|. .+++|+.|+++++. .+ +..+..+++|+.|+++++
T Consensus 481 ---------------~~~~l~~L~~L~Ls~N-~l~-~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 481 ---------------ALAALRCLEVLQASDN-ALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp ---------------GGGGCTTCCEEECCSS-CCC-CCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred ---------------hhhcCCCCCEEECCCC-CCC-CCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 3466889999999876 676 4663 57889999998765 33 456778899999999987
Q ss_pred C
Q 037108 220 K 220 (239)
Q Consensus 220 ~ 220 (239)
+
T Consensus 544 ~ 544 (567)
T 1dce_A 544 S 544 (567)
T ss_dssp G
T ss_pred c
Confidence 5
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.80 E-value=1.4e-08 Score=76.98 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=13.5
Q ss_pred cCcEEeCCCCCCCcccCcc-CCCCccCCccCc
Q 037108 6 KLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCK 36 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~ 36 (239)
+|++|+++++ .++.+|.. ++++++|++|++
T Consensus 29 ~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 59 (208)
T 2o6s_A 29 QTTYLDLETN-SLKSLPNGVFDELTSLTQLYL 59 (208)
T ss_dssp TCSEEECCSS-CCCCCCTTTTTTCTTCSEEEC
T ss_pred CCcEEEcCCC-ccCcCChhhhcccccCcEEEC
Confidence 4455555554 24444432 344444444443
No 99
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.79 E-value=5.3e-09 Score=76.54 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=38.2
Q ss_pred CcccCcEEeCCCCCCCc--ccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEe
Q 037108 3 NLIKLHHLNNPSTDSLE--EMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISR 64 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~--~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~ 64 (239)
...+|++|++++|. +. .+|..++++++|++|++..+.-. .+..+..+++|+ .+.+.+
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~---~~~~~~~l~~L~-~L~Ls~ 80 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLK-KLELSE 80 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCC---CCSSCCCCSSCC-EEEEES
T ss_pred CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCC---ChhhhccCCCCC-EEECcC
Confidence 45789999999994 76 89988899999999877543321 114445555555 555543
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.77 E-value=1.5e-08 Score=76.73 Aligned_cols=161 Identities=17% Similarity=0.115 Sum_probs=97.4
Q ss_pred cEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccccc
Q 037108 8 HHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKD 87 (239)
Q Consensus 8 r~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~ 87 (239)
+.++.+++ .++++|.++ .++|++|++....-. ......++++++|+ .+++.+.. ........+..+++|+.
T Consensus 10 ~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~l~~n~----l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLT-QLYLGGNK----LQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCS-EEECCSSC----CCCCCTTTTTTCTTCCE
T ss_pred CEEEecCC-CccCCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCc-EEECCCCc----cCccChhhcCCCCCcCE
Confidence 56777777 588999766 458898877544321 12222356777777 77775432 12222334677889999
Q ss_pred ceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCCc
Q 037108 88 LLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLAD 167 (239)
Q Consensus 88 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~~ 167 (239)
|+++.+..... ....+..+++|+.|++.++....+|. ..++.+++
T Consensus 81 L~Ls~n~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~~~--------------------------~~~~~l~~ 125 (208)
T 2o6s_A 81 LNLSTNQLQSL---------PNGVFDKLTQLKELALNTNQLQSLPD--------------------------GVFDKLTQ 125 (208)
T ss_dssp EECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TTTTTCTT
T ss_pred EECCCCcCCcc---------CHhHhcCccCCCEEEcCCCcCcccCH--------------------------hHhccCCc
Confidence 99986643211 11234567899999998876544432 12355778
Q ss_pred ccEEeeccCccccccccC----CCCcccEEEeccccccccccCCCCcccEEEecc
Q 037108 168 LRELFLVSCSKLQRTLLE----YLPSLETLVIRKCEQLLVSILSLPTLRKLTVNG 218 (239)
Q Consensus 168 L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~i~~ 218 (239)
|++|+++++ +++ .+|. .+++|+.|++.+++- ...+++|++|.+..
T Consensus 126 L~~L~l~~N-~l~-~~~~~~~~~l~~L~~L~l~~N~~----~~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 126 LKDLRLYQN-QLK-SVPDGVFDRLTSLQYIWLHDNPW----DCTCPGIRYLSEWI 174 (208)
T ss_dssp CCEEECCSS-CCS-CCCTTTTTTCTTCCEEECCSCCB----CCCTTTTHHHHHHH
T ss_pred CCEEECCCC-ccc-eeCHHHhccCCCccEEEecCCCe----ecCCCCHHHHHHHH
Confidence 888888866 555 3332 467888888877531 23344455544443
No 101
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.75 E-value=1.6e-08 Score=88.83 Aligned_cols=58 Identities=16% Similarity=0.048 Sum_probs=36.5
Q ss_pred CCCCcCCcccEEeeccCccccccccC---CCCcccEEEeccccc--c-ccccCCC-CcccEEEecc
Q 037108 160 KSDEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCEQ--L-LVSILSL-PTLRKLTVNG 218 (239)
Q Consensus 160 ~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~~--l-~~~~~~l-~~L~~L~i~~ 218 (239)
..++.+++|++|+++++ ++++..|. .+++|+.|+++++.- + +..+..+ ++|++|++++
T Consensus 512 ~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp TTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred HHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 44567788888888866 56522222 467788888877552 1 2244455 4788888875
No 102
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.74 E-value=2.3e-10 Score=100.06 Aligned_cols=55 Identities=25% Similarity=0.262 Sum_probs=32.9
Q ss_pred CcCCcccEEeeccCcccccc-c---cCCCCcccEEEeccccc---cccccCCCCcccEEEecc
Q 037108 163 EGLADLRELFLVSCSKLQRT-L---LEYLPSLETLVIRKCEQ---LLVSILSLPTLRKLTVNG 218 (239)
Q Consensus 163 ~~~~~L~~L~l~~~~~L~~~-~---p~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~i~~ 218 (239)
..+++|++|++++|. +.+. + -..+++|++|++.++-. +......+++|++|++.+
T Consensus 290 ~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 290 PFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp GGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred hhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 346677777777775 4321 1 13577777777764321 222334677888888885
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.74 E-value=1.3e-08 Score=80.25 Aligned_cols=162 Identities=17% Similarity=0.218 Sum_probs=110.8
Q ss_pred cccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 4 LIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
+.++..++++++ .++++| .+.++++|++|++....- ..+..++.+++|+ .|.+.+.. +... .+ +..++
T Consensus 18 l~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~i---~~l~~l~~l~~L~-~L~L~~N~-i~~~---~~--l~~l~ 85 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSNI---QSLAGMQFFTNLK-ELHLSHNQ-ISDL---SP--LKDLT 85 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSCC---CCCTTGGGCTTCC-EEECCSSC-CCCC---GG--GTTCS
T ss_pred HHHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCCCc---ccchHHhhCCCCC-EEECCCCc-cCCC---hh--hccCC
Confidence 556777888888 588888 688899999997754322 2344667777777 77775432 2211 11 67788
Q ss_pred ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCC
Q 037108 84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDE 163 (239)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~ 163 (239)
+|+.|+++.+.... +..+.. ++|+.|++.++....++ .++
T Consensus 86 ~L~~L~L~~N~l~~-----------l~~~~~-~~L~~L~L~~N~l~~~~----------------------------~l~ 125 (263)
T 1xeu_A 86 KLEELSVNRNRLKN-----------LNGIPS-ACLSRLFLDNNELRDTD----------------------------SLI 125 (263)
T ss_dssp SCCEEECCSSCCSC-----------CTTCCC-SSCCEEECCSSCCSBSG----------------------------GGT
T ss_pred CCCEEECCCCccCC-----------cCcccc-CcccEEEccCCccCCCh----------------------------hhc
Confidence 99999998664321 111222 78999999887543322 234
Q ss_pred cCCcccEEeeccCccccccccC--CCCcccEEEecccc--ccccccCCCCcccEEEecccC
Q 037108 164 GLADLRELFLVSCSKLQRTLLE--YLPSLETLVIRKCE--QLLVSILSLPTLRKLTVNGCK 220 (239)
Q Consensus 164 ~~~~L~~L~l~~~~~L~~~~p~--~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~ 220 (239)
.+++|++|+++++ +++ .++. .+++|+.|+++++. .+ ..+..+++|+.|++++++
T Consensus 126 ~l~~L~~L~Ls~N-~i~-~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 126 HLKNLEILSIRNN-KLK-SIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TCTTCCEEECTTS-CCC-BCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred CcccccEEECCCC-cCC-CChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 6889999999976 565 4443 68899999998876 23 467788999999998864
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.67 E-value=6e-08 Score=74.25 Aligned_cols=149 Identities=20% Similarity=0.186 Sum_probs=83.9
Q ss_pred CcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccc
Q 037108 7 LHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLK 86 (239)
Q Consensus 7 Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 86 (239)
-+.++++++ .++++|..+.. .+++|++....-........++++++|+ .|.+.+.. .....+..+.++++|+
T Consensus 13 ~~~l~~s~n-~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~-~L~L~~N~----i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 13 GTTVDCSNQ-KLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLR-KINFSNNK----ITDIEEGAFEGASGVN 84 (220)
T ss_dssp TTEEECCSS-CCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCC-EEECCSSC----CCEECTTTTTTCTTCC
T ss_pred CCEeEeCCC-CcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCC-EEECCCCc----CCEECHHHhCCCCCCC
Confidence 357888888 58889987754 3466665332211111111245566666 66654322 2222233566677788
Q ss_pred cceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCC
Q 037108 87 DLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLA 166 (239)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~ 166 (239)
.|+++.+..... ....+..+++|+.|+++++....++ +..++.++
T Consensus 85 ~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~Ls~N~l~~~~--------------------------~~~~~~l~ 129 (220)
T 2v70_A 85 EILLTSNRLENV---------QHKMFKGLESLKTLMLRSNRITCVG--------------------------NDSFIGLS 129 (220)
T ss_dssp EEECCSSCCCCC---------CGGGGTTCSSCCEEECTTSCCCCBC--------------------------TTSSTTCT
T ss_pred EEECCCCccCcc---------CHhHhcCCcCCCEEECCCCcCCeEC--------------------------HhHcCCCc
Confidence 888775543211 1223445677888888776543332 12345677
Q ss_pred cccEEeeccCccccccccC---CCCcccEEEecccc
Q 037108 167 DLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE 199 (239)
Q Consensus 167 ~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~ 199 (239)
+|++|+++++ ++++..|. .+++|+.|++.+.+
T Consensus 130 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 130 SVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred cCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 8888888865 56533343 46778888877644
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.67 E-value=1.2e-07 Score=82.62 Aligned_cols=184 Identities=14% Similarity=0.042 Sum_probs=111.6
Q ss_pred cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108 6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL 85 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L 85 (239)
+|++|+++++ .++.+|..+. ++|++|++....-. .+. +.+++|+ .|++.+.. +.. .+. +.+ +|
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l~--~~L~~L~Ls~N~l~---~ip--~~l~~L~-~L~Ls~N~-l~~----ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNLP--PQITVLEITQNALI---SLP--ELPASLE-YLDACDNR-LST----LPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCCC--TTCSEEECCSSCCS---CCC--CCCTTCC-EEECCSSC-CSC----CCC-CCT--TC
T ss_pred CccEEEeCCC-CCCccCHhHc--CCCCEEECcCCCCc---ccc--cccCCCC-EEEccCCC-CCC----cch-hhc--CC
Confidence 7999999999 5888998885 78999987543322 222 3456666 66665432 111 112 333 78
Q ss_pred ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcC
Q 037108 86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGL 165 (239)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~ 165 (239)
+.|+++.+.... ++. .+++|+.|+++++....+|..+..+. .|.+.+. .+..+ |. ++
T Consensus 123 ~~L~Ls~N~l~~----------lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~----~L~Ls~N-~L~~l--p~-l~-- 179 (571)
T 3cvr_A 123 KHLDVDNNQLTM----------LPE---LPALLEYINADNNQLTMLPELPTSLE----VLSVRNN-QLTFL--PE-LP-- 179 (571)
T ss_dssp CEEECCSSCCSC----------CCC---CCTTCCEEECCSSCCSCCCCCCTTCC----EEECCSS-CCSCC--CC-CC--
T ss_pred CEEECCCCcCCC----------CCC---cCccccEEeCCCCccCcCCCcCCCcC----EEECCCC-CCCCc--ch-hh--
Confidence 888888654321 111 35789999998887666665211111 1333322 11111 22 22
Q ss_pred CcccEEeeccCccccccccCCCCcc-------cEEEecccc--ccccccCCCCcccEEEecccCccccccccccC
Q 037108 166 ADLRELFLVSCSKLQRTLLEYLPSL-------ETLVIRKCE--QLLVSILSLPTLRKLTVNGCKEVVGRAINLSS 231 (239)
Q Consensus 166 ~~L~~L~l~~~~~L~~~~p~~l~~L-------~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 231 (239)
++|++|+++++ +++ .+|...++| +.|+++++. .++..+..+++|+.|++++++--...+..+..
T Consensus 180 ~~L~~L~Ls~N-~L~-~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 180 ESLEALDVSTN-LLE-SLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp TTCCEEECCSS-CCS-SCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CCCCEEECcCC-CCC-chhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 89999999976 676 777633367 889988765 45556667899999999998755544444433
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.67 E-value=8.9e-09 Score=73.78 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=77.1
Q ss_pred CcccCcEEeCCCCCCCc--ccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccC
Q 037108 3 NLIKLHHLNNPSTDSLE--EMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLN 80 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~--~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~ 80 (239)
...+|++|++++|. +. .+|..++++++|++|++..+.- ..+..++++++|+ .+++.+..- . ...+..+.
T Consensus 15 ~~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~l~~L~-~L~Ls~n~i-~---~~~~~~~~ 85 (149)
T 2je0_A 15 TPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGL---TSIANLPKLNKLK-KLELSDNRV-S---GGLEVLAE 85 (149)
T ss_dssp CGGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCC---CCCTTCCCCTTCC-EEECCSSCC-C---SCTHHHHH
T ss_pred CCccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCC---CCchhhhcCCCCC-EEECCCCcc-c---chHHHHhh
Confidence 45789999999995 76 8999999999999998754322 2225677777777 777754332 1 11233344
Q ss_pred cccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccc
Q 037108 81 GKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAI 133 (239)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 133 (239)
.+++|+.|+++.+... ....+..+..+++|+.|++.++.....|.
T Consensus 86 ~l~~L~~L~ls~N~i~--------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIK--------DLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp HCTTCCEEECTTSCCC--------SHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred hCCCCCEEECCCCcCC--------ChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 5778999998855321 12233566677899999999886544443
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.66 E-value=1e-07 Score=73.36 Aligned_cols=144 Identities=19% Similarity=0.127 Sum_probs=76.2
Q ss_pred cEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccccc
Q 037108 8 HHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKD 87 (239)
Q Consensus 8 r~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~ 87 (239)
+.++.+++ .++.+|.++. ++|++|++..... .......+.++++|+ .|.+.+.. ........+..+++|+.
T Consensus 22 ~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~-~L~L~~N~----l~~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGIP--TNAQILYLHDNQI-TKLEPGVFDSLINLK-ELYLGSNQ----LGALPVGVFDSLTQLTV 92 (229)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSSCC-CCCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTCTTCCE
T ss_pred CEeEccCC-CcCccCCCCC--CCCCEEEcCCCcc-CccCHHHhhCccCCc-EEECCCCC----CCCcChhhcccCCCcCE
Confidence 45666666 4777777664 6777776543221 111223345555555 55554322 11111233455667777
Q ss_pred ceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCCc
Q 037108 88 LLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLAD 167 (239)
Q Consensus 88 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~~ 167 (239)
|+++.+..... ....+..+++|+.|++.++....+|. .++.+++
T Consensus 93 L~Ls~N~l~~l---------~~~~~~~l~~L~~L~Ls~N~l~~lp~---------------------------~~~~l~~ 136 (229)
T 3e6j_A 93 LDLGTNQLTVL---------PSAVFDRLVHLKELFMCCNKLTELPR---------------------------GIERLTH 136 (229)
T ss_dssp EECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCSCCT---------------------------TGGGCTT
T ss_pred EECCCCcCCcc---------ChhHhCcchhhCeEeccCCcccccCc---------------------------ccccCCC
Confidence 77765432110 01123445677777777765444443 2245677
Q ss_pred ccEEeeccCccccccccC----CCCcccEEEeccc
Q 037108 168 LRELFLVSCSKLQRTLLE----YLPSLETLVIRKC 198 (239)
Q Consensus 168 L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c 198 (239)
|++|+++++ +++ .+|. .+++|+.|++.+.
T Consensus 137 L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 137 LTHLALDQN-QLK-SIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CSEEECCSS-CCC-CCCTTTTTTCTTCCEEECTTS
T ss_pred CCEEECCCC-cCC-ccCHHHHhCCCCCCEEEeeCC
Confidence 777777765 554 4432 4567777777653
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.63 E-value=1e-07 Score=82.99 Aligned_cols=153 Identities=12% Similarity=-0.026 Sum_probs=90.6
Q ss_pred cccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 4 LIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
+.+|++|++++| .++.+| +.+++|++|++....-.. +..+.+ +|+ .|.+.+.. +.. .+. .++
T Consensus 79 ~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~---ip~l~~--~L~-~L~Ls~N~-l~~----lp~---~l~ 140 (571)
T 3cvr_A 79 PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLST---LPELPA--SLK-HLDVDNNQ-LTM----LPE---LPA 140 (571)
T ss_dssp CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSC---CCCCCT--TCC-EEECCSSC-CSC----CCC---CCT
T ss_pred cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCC---cchhhc--CCC-EEECCCCc-CCC----CCC---cCc
Confidence 367999999999 588999 568899999875433221 222332 566 66664432 111 111 467
Q ss_pred ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCC
Q 037108 84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDE 163 (239)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~ 163 (239)
+|+.|+++.+.... ++. .+++|+.|+++++....+|. +. ..-..|.+.+. ++..+ |. +.
T Consensus 141 ~L~~L~Ls~N~l~~----------lp~---~l~~L~~L~Ls~N~L~~lp~-l~---~~L~~L~Ls~N-~L~~l--p~-~~ 199 (571)
T 3cvr_A 141 LLEYINADNNQLTM----------LPE---LPTSLEVLSVRNNQLTFLPE-LP---ESLEALDVSTN-LLESL--PA-VP 199 (571)
T ss_dssp TCCEEECCSSCCSC----------CCC---CCTTCCEEECCSSCCSCCCC-CC---TTCCEEECCSS-CCSSC--CC-CC
T ss_pred cccEEeCCCCccCc----------CCC---cCCCcCEEECCCCCCCCcch-hh---CCCCEEECcCC-CCCch--hh-HH
Confidence 88898888654321 111 34688999998887666665 31 00002333222 11111 22 22
Q ss_pred cCCcc-------cEEeeccCccccccccC---CCCcccEEEecccc
Q 037108 164 GLADL-------RELFLVSCSKLQRTLLE---YLPSLETLVIRKCE 199 (239)
Q Consensus 164 ~~~~L-------~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~ 199 (239)
.+| +.|+++++ +++ .+|. .+++|+.|++++++
T Consensus 200 --~~L~~~~~~L~~L~Ls~N-~l~-~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 200 --VRNHHSEETEIFFRCREN-RIT-HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ----------CCEEEECCSS-CCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred --HhhhcccccceEEecCCC-cce-ecCHHHhcCCCCCEEEeeCCc
Confidence 266 99999976 676 6774 58999999999876
No 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.60 E-value=3.2e-09 Score=89.97 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=33.8
Q ss_pred cCCcccEEeeccCcccccccc--------CCCCcccEEEeccccc-------cccccCCCCcccEEEecccC
Q 037108 164 GLADLRELFLVSCSKLQRTLL--------EYLPSLETLVIRKCEQ-------LLVSILSLPTLRKLTVNGCK 220 (239)
Q Consensus 164 ~~~~L~~L~l~~~~~L~~~~p--------~~l~~L~~L~l~~c~~-------l~~~~~~l~~L~~L~i~~c~ 220 (239)
.+++|++|+++++ .+.+..+ ...++|++|++++|.- +...+..+++|++|++++|+
T Consensus 339 ~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 339 QNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred hCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 3577788888766 4432111 1256788888877641 22234567778888887764
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.59 E-value=1.5e-07 Score=72.10 Aligned_cols=145 Identities=20% Similarity=0.188 Sum_probs=73.4
Q ss_pred cEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccccc
Q 037108 8 HHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKD 87 (239)
Q Consensus 8 r~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~ 87 (239)
+.++.+++ .++++|..+. ++|++|++....-. ......+..+++|+ .|.+.+.. .....+..+.++++|+.
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~-~L~Ls~N~----i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLR-RIDLSNNQ----ISELAPDAFQGLRSLNS 84 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCC-EEECCSSC----CCEECTTTTTTCSSCCE
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCC-EEECCCCc----CCCcCHHHhhCCcCCCE
Confidence 45677776 4777887665 56677655322110 01111334444555 55543221 11222344556666777
Q ss_pred ceeEEcCCCCCCCCCcchHHHhh-cCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCC
Q 037108 88 LLLEWNNSTSNIREPETDTCVLD-LLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLA 166 (239)
Q Consensus 88 L~l~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~ 166 (239)
|+++.+.... +.. .+..+++|+.|++.++....++ +..++.++
T Consensus 85 L~Ls~N~l~~----------l~~~~f~~l~~L~~L~L~~N~l~~~~--------------------------~~~~~~l~ 128 (220)
T 2v9t_B 85 LVLYGNKITE----------LPKSLFEGLFSLQLLLLNANKINCLR--------------------------VDAFQDLH 128 (220)
T ss_dssp EECCSSCCCC----------CCTTTTTTCTTCCEEECCSSCCCCCC--------------------------TTTTTTCT
T ss_pred EECCCCcCCc----------cCHhHccCCCCCCEEECCCCCCCEeC--------------------------HHHcCCCC
Confidence 7766543211 111 1234566777777665433322 12344567
Q ss_pred cccEEeeccCccccccccC----CCCcccEEEecccc
Q 037108 167 DLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE 199 (239)
Q Consensus 167 ~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~ 199 (239)
+|++|+++++ +++ .++. .+++|++|++.+.+
T Consensus 129 ~L~~L~L~~N-~l~-~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 129 NLNLLSLYDN-KLQ-TIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSS-CCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-cCC-EECHHHHhCCCCCCEEEeCCCC
Confidence 7777777765 454 3322 35677777776543
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.57 E-value=1.1e-07 Score=72.73 Aligned_cols=130 Identities=14% Similarity=0.134 Sum_probs=87.2
Q ss_pred ccCcEEeCCCCCCCcccCc-cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 5 IKLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
.+|++|+++++ .++.+|. .++++++|++|++....- .......+..+++|+ .|++.+.. ........+..++
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~-~L~Ls~N~----l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLN-SLVLYGNK----ITELPKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCC-CEECTTTTTTCSSCC-EEECCSSC----CCCCCTTTTTTCT
T ss_pred cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcC-CCcCHHHhhCCcCCC-EEECCCCc----CCccCHhHccCCC
Confidence 47999999999 5888886 689999999998754322 111234566777777 77765432 1222233457788
Q ss_pred ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCC
Q 037108 84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDE 163 (239)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~ 163 (239)
+|+.|+++.+..... ....+..+++|+.|++.++....++. ..+.
T Consensus 105 ~L~~L~L~~N~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~~~--------------------------~~~~ 149 (220)
T 2v9t_B 105 SLQLLLLNANKINCL---------RVDAFQDLHNLNLLSLYDNKLQTIAK--------------------------GTFS 149 (220)
T ss_dssp TCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCSCCCT--------------------------TTTT
T ss_pred CCCEEECCCCCCCEe---------CHHHcCCCCCCCEEECCCCcCCEECH--------------------------HHHh
Confidence 999999986653221 12345667899999999886554442 2345
Q ss_pred cCCcccEEeeccC
Q 037108 164 GLADLRELFLVSC 176 (239)
Q Consensus 164 ~~~~L~~L~l~~~ 176 (239)
.+++|++|++.++
T Consensus 150 ~l~~L~~L~L~~N 162 (220)
T 2v9t_B 150 PLRAIQTMHLAQN 162 (220)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEEeCCC
Confidence 6888999999865
No 112
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.57 E-value=9.4e-10 Score=96.17 Aligned_cols=54 Identities=28% Similarity=0.210 Sum_probs=34.6
Q ss_pred cCCcccEEeeccCcccccc-c---cCCCCcccEEEeccccc---cccccCCCCcccEEEecc
Q 037108 164 GLADLRELFLVSCSKLQRT-L---LEYLPSLETLVIRKCEQ---LLVSILSLPTLRKLTVNG 218 (239)
Q Consensus 164 ~~~~L~~L~l~~~~~L~~~-~---p~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~i~~ 218 (239)
.+++|++|++++|. +.+. + ...+|+|++|.+.+|-. +......+++|++|.+.+
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEec
Confidence 46788888888775 5421 1 23678888888887732 111233578888888844
No 113
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.53 E-value=5e-09 Score=88.79 Aligned_cols=56 Identities=25% Similarity=0.313 Sum_probs=35.9
Q ss_pred cCCcccEEeeccCcccccc----ccC---CCCcccEEEeccccc-------ccccc-CCCCcccEEEecccC
Q 037108 164 GLADLRELFLVSCSKLQRT----LLE---YLPSLETLVIRKCEQ-------LLVSI-LSLPTLRKLTVNGCK 220 (239)
Q Consensus 164 ~~~~L~~L~l~~~~~L~~~----~p~---~l~~L~~L~l~~c~~-------l~~~~-~~l~~L~~L~i~~c~ 220 (239)
.+++|++|++++| .+.+. ++. .+++|++|+++++.- +...+ ...++|++|++++|.
T Consensus 254 ~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 254 PSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp TTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred CCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 4678888888877 55421 343 368888888887642 11111 234688899988886
No 114
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.52 E-value=6.2e-09 Score=90.97 Aligned_cols=197 Identities=15% Similarity=0.078 Sum_probs=109.8
Q ss_pred CcccCcEEeCCCCCCCcc--cCccCCCCccCCccCceEeccCCCCChhhh-cccccccceEEEEecc-----CCCChhHH
Q 037108 3 NLIKLHHLNNPSTDSLEE--MPQGIGKLTSLRTMCKFVVGNEIGSGLRQL-KSLIHLQGTVCISRLE-----NVKEISAA 74 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~--lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L-~~L~~L~~~L~~~~~~-----~~~~~~~~ 74 (239)
.+.+|++|++++|. +.. ++.-++++++|++|++..+. ....+..+ ..+++|+ .|++.... ......+.
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~~~L~-~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKDLR-ELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCC-EEEEECSCTTCSSCSSCCCHH
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhCCCCC-EEEEecCcccccccCCCCCHH
Confidence 46899999999995 553 33346789999999876431 11222222 2467777 88885421 11112222
Q ss_pred HHhcc-CcccccccceeEEcCCCCCCCCCcchHHHhhcCC-CCCCcceEEEe--c---cCCCC-cc--chhhhccCccee
Q 037108 75 KEAQL-NGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLK-PHQSLKKLKIN--G---YGGTK-FA--IYTLSITGDSLF 144 (239)
Q Consensus 75 ~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~--~---~~~~~-~p--~~~l~l~~~~~~ 144 (239)
....+ ..+++|+.|.+..+.. ... .+..+. ..++|+.|++. + +.... .| ..+..
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~l--------~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~------- 426 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQM--------TNA-ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA------- 426 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESCC--------CHH-HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH-------
T ss_pred HHHHHHHhchhHHHHHHhcCCc--------CHH-HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH-------
Confidence 22222 3367888886654321 111 122222 35789999998 2 22211 11 11100
Q ss_pred eeeccCCCceeeCCCCC--------CC-cCCcccEEeeccCccccccc----cCCCCcccEEEecccccc----ccccCC
Q 037108 145 SRYARMGKWIPHGSGKS--------DE-GLADLRELFLVSCSKLQRTL----LEYLPSLETLVIRKCEQL----LVSILS 207 (239)
Q Consensus 145 L~l~~~~~l~~~~~~~~--------~~-~~~~L~~L~l~~~~~L~~~~----p~~l~~L~~L~l~~c~~l----~~~~~~ 207 (239)
.+..+++|+.+..... .+ .+++|++|++++|. +.+.. ...+++|++|++++|+.- ......
T Consensus 427 -l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 504 (594)
T 2p1m_B 427 -IVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASK 504 (594)
T ss_dssp -HHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGG
T ss_pred -HHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHh
Confidence 0123334433321111 11 27889999999874 43221 135899999999999852 123456
Q ss_pred CCcccEEEecccCc
Q 037108 208 LPTLRKLTVNGCKE 221 (239)
Q Consensus 208 l~~L~~L~i~~c~~ 221 (239)
+++|++|++++|+.
T Consensus 505 l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 505 LETMRSLWMSSCSV 518 (594)
T ss_dssp GGGSSEEEEESSCC
T ss_pred CCCCCEEeeeCCCC
Confidence 89999999999976
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.51 E-value=1.7e-07 Score=72.22 Aligned_cols=131 Identities=14% Similarity=0.120 Sum_probs=87.8
Q ss_pred cccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108 4 LIKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK 82 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 82 (239)
..+|++|++++|. +..+ |..++++++|++|++....- .......++.+++|+ .|++.+.. ........+..+
T Consensus 39 ~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~-~L~Ls~N~----l~~l~~~~~~~l 111 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLT-VLDLGTNQ----LTVLPSAVFDRL 111 (229)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTC
T ss_pred CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcC-EEECCCCc----CCccChhHhCcc
Confidence 3679999999995 7777 67799999999998754332 111223356677777 77775432 222223446778
Q ss_pred cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108 83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD 162 (239)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~ 162 (239)
++|+.|.++.+... .++..+..+++|+.|++.++....+|. ..+
T Consensus 112 ~~L~~L~Ls~N~l~----------~lp~~~~~l~~L~~L~L~~N~l~~~~~--------------------------~~~ 155 (229)
T 3e6j_A 112 VHLKELFMCCNKLT----------ELPRGIERLTHLTHLALDQNQLKSIPH--------------------------GAF 155 (229)
T ss_dssp TTCCEEECCSSCCC----------SCCTTGGGCTTCSEEECCSSCCCCCCT--------------------------TTT
T ss_pred hhhCeEeccCCccc----------ccCcccccCCCCCEEECCCCcCCccCH--------------------------HHH
Confidence 89999999866432 233445567899999999876544442 234
Q ss_pred CcCCcccEEeeccCc
Q 037108 163 EGLADLRELFLVSCS 177 (239)
Q Consensus 163 ~~~~~L~~L~l~~~~ 177 (239)
..+++|+.|++.+++
T Consensus 156 ~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred hCCCCCCEEEeeCCC
Confidence 568899999998753
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.50 E-value=1e-07 Score=78.42 Aligned_cols=151 Identities=19% Similarity=0.150 Sum_probs=76.6
Q ss_pred cCcEEeCCCCCCCcccCcc-CC-CCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 6 KLHHLNNPSTDSLEEMPQG-IG-KLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~-i~-~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
.+++|++++| .++.+|.. +. ++++|++|++....-. ......+.++++|+ .|++.+.. ........+..++
T Consensus 40 ~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~-~L~Ls~N~----l~~~~~~~~~~l~ 112 (361)
T 2xot_A 40 YTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLR-YLDLSSNH----LHTLDEFLFSDLQ 112 (361)
T ss_dssp TCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCC-EEECCSSC----CCEECTTTTTTCT
T ss_pred CCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCC-EEECCCCc----CCcCCHHHhCCCc
Confidence 4677777777 46666654 33 6777777765332111 11112344555555 55554321 1112223355566
Q ss_pred ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCC
Q 037108 84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDE 163 (239)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~ 163 (239)
+|+.|+++.+..... ....+..+++|+.|++.++....+|.... ...+
T Consensus 113 ~L~~L~L~~N~i~~~---------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-----------------------~~~~ 160 (361)
T 2xot_A 113 ALEVLLLYNNHIVVV---------DRNAFEDMAQLQKLYLSQNQISRFPVELI-----------------------KDGN 160 (361)
T ss_dssp TCCEEECCSSCCCEE---------CTTTTTTCTTCCEEECCSSCCCSCCGGGT-----------------------C---
T ss_pred CCCEEECCCCcccEE---------CHHHhCCcccCCEEECCCCcCCeeCHHHh-----------------------cCcc
Confidence 677777664432100 12234445677777777665544443220 0113
Q ss_pred cCCcccEEeeccCccccccccC----CCCc--ccEEEecc
Q 037108 164 GLADLRELFLVSCSKLQRTLLE----YLPS--LETLVIRK 197 (239)
Q Consensus 164 ~~~~L~~L~l~~~~~L~~~~p~----~l~~--L~~L~l~~ 197 (239)
.+++|+.|+++++ +++ .+|. .++. ++.|++.+
T Consensus 161 ~l~~L~~L~L~~N-~l~-~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 161 KLPKLMLLDLSSN-KLK-KLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp -CTTCCEEECCSS-CCC-CCCHHHHHHSCHHHHTTEECCS
T ss_pred cCCcCCEEECCCC-CCC-ccCHHHhhhccHhhcceEEecC
Confidence 5778888888865 565 4442 3454 36677765
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.43 E-value=4.7e-08 Score=80.49 Aligned_cols=208 Identities=10% Similarity=0.015 Sum_probs=112.4
Q ss_pred Ccc-cCcEEeCCCCCCCccc-CccCCCC-----ccCCccCceEeccCCCCChhh----hccc-ccccceEEEEeccCCCC
Q 037108 3 NLI-KLHHLNNPSTDSLEEM-PQGIGKL-----TSLRTMCKFVVGNEIGSGLRQ----LKSL-IHLQGTVCISRLENVKE 70 (239)
Q Consensus 3 ~L~-~Lr~L~l~~~~~~~~l-P~~i~~L-----~~L~~L~~~~~~~~~~~~i~~----L~~L-~~L~~~L~~~~~~~~~~ 70 (239)
++. +|++|++++|. ++.. |..++.+ ++|++|++..+.-. ...... +..+ ++|+ .|++.+..-...
T Consensus 48 ~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~-~L~Ls~N~l~~~ 124 (362)
T 3goz_A 48 NTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLS-YKSSDELVKTLAAIPFTIT-VLDLGWNDFSSK 124 (362)
T ss_dssp TCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCTTCC-EEECCSSCGGGS
T ss_pred hCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCC-hHHHHHHHHHHHhCCCCcc-EEECcCCcCCcH
Confidence 455 89999999994 6665 4556665 89999987554321 122222 3333 6677 777754431111
Q ss_pred hhHHHHhccCcc-cccccceeEEcCCCCCCCCCcchHHHhhcCCCC-CCcceEEEeccCCCCc-cchhhh-ccCc-ce--
Q 037108 71 ISAAKEAQLNGK-RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPH-QSLKKLKINGYGGTKF-AIYTLS-ITGD-SL-- 143 (239)
Q Consensus 71 ~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~-p~~~l~-l~~~-~~-- 143 (239)
........+..+ ++|+.|+++.+... ......+.+.+... ++|+.|+++++..... +..+.. +... ..
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~-----~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~ 199 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLG-----IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGG-----GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCC-----HHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCC
Confidence 112222334442 58999998865421 12233444444444 4899999988764332 222211 0000 00
Q ss_pred eeeeccCCCceeeCC---CCCCCc-CCcccEEeeccCccccccc-------cCCCCcccEEEecccc--c--------cc
Q 037108 144 FSRYARMGKWIPHGS---GKSDEG-LADLRELFLVSCSKLQRTL-------LEYLPSLETLVIRKCE--Q--------LL 202 (239)
Q Consensus 144 ~L~l~~~~~l~~~~~---~~~~~~-~~~L~~L~l~~~~~L~~~~-------p~~l~~L~~L~l~~c~--~--------l~ 202 (239)
.|.+.+.. +..... +..+.. .++|++|+++++ .+.+.- -..+++|+.|++++|. . +.
T Consensus 200 ~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~ 277 (362)
T 3goz_A 200 SLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277 (362)
T ss_dssp EEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred EEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence 12222110 111000 001112 358999999987 554211 1367899999999876 1 22
Q ss_pred cccCCCCcccEEEecccC
Q 037108 203 VSILSLPTLRKLTVNGCK 220 (239)
Q Consensus 203 ~~~~~l~~L~~L~i~~c~ 220 (239)
..++.+++|++|++++++
T Consensus 278 ~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 278 AAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTSTTCCEEEEECTTSCB
T ss_pred HHhccCCceEEEecCCCc
Confidence 356778889999998765
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.42 E-value=2.2e-07 Score=76.40 Aligned_cols=166 Identities=17% Similarity=0.126 Sum_probs=100.1
Q ss_pred cEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhc-ccccccceEEEEeccCCCChhHHHHhccCcccccc
Q 037108 8 HHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLK-SLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLK 86 (239)
Q Consensus 8 r~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~-~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 86 (239)
+.++.+++ .++.+|..+.. .+++|++....- .......+. ++++|+ .|.+.+.. ........+.++++|+
T Consensus 21 ~~l~c~~~-~l~~iP~~~~~--~l~~L~Ls~N~l-~~l~~~~~~~~l~~L~-~L~L~~N~----i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLPS--YTALLDLSHNNL-SRLRAEWTPTRLTNLH-SLLLSHNH----LNFISSEAFVPVPNLR 91 (361)
T ss_dssp TEEECCSS-CCSSCCSSCCT--TCSEEECCSSCC-CEECTTSSSSCCTTCC-EEECCSSC----CCEECTTTTTTCTTCC
T ss_pred CEEEeCCC-CcCccCccCCC--CCCEEECCCCCC-CccChhhhhhcccccC-EEECCCCc----CCccChhhccCCCCCC
Confidence 67888888 58999987764 577777643221 111112233 566666 66664322 2222234567778888
Q ss_pred cceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCC
Q 037108 87 DLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLA 166 (239)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~ 166 (239)
.|+++.+..... ....+..+++|+.|++.++....++ +..+..++
T Consensus 92 ~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~L~~N~i~~~~--------------------------~~~~~~l~ 136 (361)
T 2xot_A 92 YLDLSSNHLHTL---------DEFLFSDLQALEVLLLYNNHIVVVD--------------------------RNAFEDMA 136 (361)
T ss_dssp EEECCSSCCCEE---------CTTTTTTCTTCCEEECCSSCCCEEC--------------------------TTTTTTCT
T ss_pred EEECCCCcCCcC---------CHHHhCCCcCCCEEECCCCcccEEC--------------------------HHHhCCcc
Confidence 888886542110 1123455678888888877543222 23456789
Q ss_pred cccEEeeccCccccccccC-------CCCcccEEEeccccc--cc-cccCCCCc--ccEEEeccc
Q 037108 167 DLRELFLVSCSKLQRTLLE-------YLPSLETLVIRKCEQ--LL-VSILSLPT--LRKLTVNGC 219 (239)
Q Consensus 167 ~L~~L~l~~~~~L~~~~p~-------~l~~L~~L~l~~c~~--l~-~~~~~l~~--L~~L~i~~c 219 (239)
+|++|+++++ +++ .+|. .+++|+.|+++++.- +. ..+..++. ++.|++.++
T Consensus 137 ~L~~L~L~~N-~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 137 QLQKLYLSQN-QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp TCCEEECCSS-CCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred cCCEEECCCC-cCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 9999999976 665 5553 378999999987541 21 13445665 477888764
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.40 E-value=3.5e-07 Score=69.97 Aligned_cols=130 Identities=16% Similarity=0.089 Sum_probs=85.2
Q ss_pred ccCcEEeCCCCCCCcccCc--cCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108 5 IKLHHLNNPSTDSLEEMPQ--GIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK 82 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP~--~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 82 (239)
..+++|+++++ .++.+|. .++++++|++|++....- .......++.+++|+ .|.+.+.. .....+..+..+
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~-~L~Ls~N~----l~~~~~~~~~~l 104 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVN-EILLTSNR----LENVQHKMFKGL 104 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCC-CEECTTTTTTCTTCC-EEECCSSC----CCCCCGGGGTTC
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcC-CEECHHHhCCCCCCC-EEECCCCc----cCccCHhHhcCC
Confidence 35789999999 5888843 378999999998754321 111223466677777 77765432 222233456778
Q ss_pred cccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCC
Q 037108 83 RNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSD 162 (239)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~ 162 (239)
++|+.|+++.+..... ....+..+++|+.|++.++....++ +..+
T Consensus 105 ~~L~~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~~--------------------------~~~~ 149 (220)
T 2v70_A 105 ESLKTLMLRSNRITCV---------GNDSFIGLSSVRLLSLYDNQITTVA--------------------------PGAF 149 (220)
T ss_dssp SSCCEEECTTSCCCCB---------CTTSSTTCTTCSEEECTTSCCCCBC--------------------------TTTT
T ss_pred cCCCEEECCCCcCCeE---------CHhHcCCCccCCEEECCCCcCCEEC--------------------------HHHh
Confidence 8999999986543211 1344566789999999887654432 1334
Q ss_pred CcCCcccEEeeccC
Q 037108 163 EGLADLRELFLVSC 176 (239)
Q Consensus 163 ~~~~~L~~L~l~~~ 176 (239)
+.+++|++|+++++
T Consensus 150 ~~l~~L~~L~L~~N 163 (220)
T 2v70_A 150 DTLHSLSTLNLLAN 163 (220)
T ss_dssp TTCTTCCEEECCSC
T ss_pred cCCCCCCEEEecCc
Confidence 56889999999865
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.39 E-value=3.4e-07 Score=65.40 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=48.3
Q ss_pred CCcCCcccEEeeccCccccccccC---CCCcccEEEecccc--ccc--cccCCCCcccEEEecccCcccccc---ccccC
Q 037108 162 DEGLADLRELFLVSCSKLQRTLLE---YLPSLETLVIRKCE--QLL--VSILSLPTLRKLTVNGCKEVVGRA---INLSS 231 (239)
Q Consensus 162 ~~~~~~L~~L~l~~~~~L~~~~p~---~l~~L~~L~l~~c~--~l~--~~~~~l~~L~~L~i~~c~~l~~~~---~~~~~ 231 (239)
++.+++|++|+++++ .+.+.+|. .+++|++|+++++. .+. ..+..+++|++|++++|+--...+ ..+..
T Consensus 60 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 138 (149)
T 2je0_A 60 LPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL 138 (149)
T ss_dssp CCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHH
T ss_pred hhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHH
Confidence 356788888888876 45533554 47888888888766 222 456778888888888874322222 23444
Q ss_pred ccceEeeC
Q 037108 232 SSSVVLWD 239 (239)
Q Consensus 232 l~~L~~~~ 239 (239)
+++|+.+|
T Consensus 139 l~~L~~L~ 146 (149)
T 2je0_A 139 LPQLTYLD 146 (149)
T ss_dssp CTTCCEET
T ss_pred CCCccccc
Confidence 55555443
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.39 E-value=2.9e-07 Score=82.61 Aligned_cols=110 Identities=17% Similarity=0.040 Sum_probs=76.6
Q ss_pred CCcccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 2 GNLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 2 ~~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
..+.+|+.|+|++| .+..+|..++++++|++|++...... .....+++|++|+ .|++.... .. ..+..+..
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~-~L~Ls~N~----l~-~lp~~~~~ 291 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLR-VLDLSHNR----LT-SLPAELGS 291 (727)
T ss_dssp -CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCC-EEECTTSC----CS-SCCSSGGG
T ss_pred ccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCC-EEeCcCCc----CC-ccChhhcC
Confidence 46788999999999 48899999999999999987544322 2334577777777 77764432 11 23456777
Q ss_pred ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC
Q 037108 82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK 130 (239)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 130 (239)
+++|+.|+++.+... .++..+..+++|+.|++.++....
T Consensus 292 l~~L~~L~L~~N~l~----------~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT----------TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GTTCSEEECCSSCCC----------CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCCEEECCCCCCC----------ccChhhhcCCCccEEeCCCCccCC
Confidence 888898888855321 244556777889999998886654
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.37 E-value=8.3e-07 Score=64.67 Aligned_cols=126 Identities=23% Similarity=0.200 Sum_probs=79.7
Q ss_pred ccccceEEEEeccCCCChhHHHHhccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC-cc
Q 037108 54 IHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK-FA 132 (239)
Q Consensus 54 ~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p 132 (239)
++++ .+.+.+..- . ....+..+..+++|+.|+++.+.... + ..+..+++|+.|+++++.... +|
T Consensus 24 ~~L~-~L~l~~n~l-~--~~~i~~~~~~l~~L~~L~l~~n~l~~----------~-~~~~~l~~L~~L~Ls~N~l~~~~~ 88 (168)
T 2ell_A 24 AAVR-ELVLDNCKS-N--DGKIEGLTAEFVNLEFLSLINVGLIS----------V-SNLPKLPKLKKLELSENRIFGGLD 88 (168)
T ss_dssp TSCS-EEECCSCBC-B--TTBCSSCCGGGGGCCEEEEESSCCCC----------C-SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred ccCC-EEECCCCCC-C--hhhHHHHHHhCCCCCEEeCcCCCCCC----------h-hhhccCCCCCEEECcCCcCchHHH
Confidence 4455 666554331 1 01223445677888888888654211 1 455667788888888876544 33
Q ss_pred chhhhccCcceeeeeccCCCceeeCCCCCCCcCCcccEEeeccCcccccccc-----CCCCcccEEEecccc--cccc--
Q 037108 133 IYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLL-----EYLPSLETLVIRKCE--QLLV-- 203 (239)
Q Consensus 133 ~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p-----~~l~~L~~L~l~~c~--~l~~-- 203 (239)
..+ +.+++|++|+++++ .++ .+| ..+++|+.|++++++ .+..
T Consensus 89 ~~~---------------------------~~l~~L~~L~Ls~N-~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 139 (168)
T 2ell_A 89 MLA---------------------------EKLPNLTHLNLSGN-KLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139 (168)
T ss_dssp HHH---------------------------HHCTTCCEEECBSS-SCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHH
T ss_pred HHH---------------------------hhCCCCCEEeccCC-ccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHH
Confidence 322 34788899999877 565 433 257889999998876 2322
Q ss_pred --ccCCCCcccEEEecccCccc
Q 037108 204 --SILSLPTLRKLTVNGCKEVV 223 (239)
Q Consensus 204 --~~~~l~~L~~L~i~~c~~l~ 223 (239)
.+..+++|++|++.+|..-+
T Consensus 140 ~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 140 ESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HHHHTTCSSCCEETTEETTSCB
T ss_pred HHHHHhCccCcEecCCCCChhh
Confidence 56678899999988886433
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.30 E-value=8.7e-07 Score=66.21 Aligned_cols=127 Identities=18% Similarity=0.117 Sum_probs=77.8
Q ss_pred CcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccc
Q 037108 7 LHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLK 86 (239)
Q Consensus 7 Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 86 (239)
-++++++++ .++++|..+.. +|++|++..........-..++++++|+ .|++.+.. .....+..+.++++|+
T Consensus 10 ~~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~-~L~Ls~N~----l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 10 GTTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLV-KLELKRNQ----LTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TTEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCC-EEECCSSC----CCCBCTTTTTTCTTCC
T ss_pred CCEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCC-EEECCCCC----CCCcCHhHcCCcccCC
Confidence 378899998 58999987765 7888876443221111101256666666 67664432 2223345567788889
Q ss_pred cceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCC
Q 037108 87 DLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLA 166 (239)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~ 166 (239)
.|+++.+..... ....+..+++|+.|++.++.....+ +..++.++
T Consensus 82 ~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~~--------------------------~~~~~~l~ 126 (192)
T 1w8a_A 82 ELQLGENKIKEI---------SNKMFLGLHQLKTLNLYDNQISCVM--------------------------PGSFEHLN 126 (192)
T ss_dssp EEECCSCCCCEE---------CSSSSTTCTTCCEEECCSSCCCEEC--------------------------TTSSTTCT
T ss_pred EEECCCCcCCcc---------CHHHhcCCCCCCEEECCCCcCCeeC--------------------------HHHhhcCC
Confidence 998886542211 1223556678898988887543321 23446688
Q ss_pred cccEEeeccC
Q 037108 167 DLRELFLVSC 176 (239)
Q Consensus 167 ~L~~L~l~~~ 176 (239)
+|++|+++++
T Consensus 127 ~L~~L~L~~N 136 (192)
T 1w8a_A 127 SLTSLNLASN 136 (192)
T ss_dssp TCCEEECTTC
T ss_pred CCCEEEeCCC
Confidence 8999999865
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.21 E-value=3.9e-06 Score=62.74 Aligned_cols=124 Identities=17% Similarity=0.168 Sum_probs=73.6
Q ss_pred cEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccccc
Q 037108 8 HHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKD 87 (239)
Q Consensus 8 r~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~ 87 (239)
++++++++ .++++|.++. .+|++|++....-. .....+.++++|+ .|++.+.. ........+.++++|+.
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~--~ip~~~~~l~~L~-~L~Ls~N~----i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFT--LVPKELSNYKHLT-LIDLSNNR----ISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCC--SCCGGGGGCTTCC-EEECCSSC----CCCCCTTTTTTCTTCCE
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCc--hhHHHhhcccCCC-EEECCCCc----CCEeCHhHccCCCCCCE
Confidence 56788777 4788887664 57777765433221 1114566666666 66654322 12222344667788888
Q ss_pred ceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCCc
Q 037108 88 LLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLAD 167 (239)
Q Consensus 88 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~~ 167 (239)
|+++.+..... ....+..+++|+.|++.++....+|. ..+..+++
T Consensus 83 L~Ls~N~l~~i---------~~~~f~~l~~L~~L~L~~N~l~~~~~--------------------------~~~~~l~~ 127 (193)
T 2wfh_A 83 LILSYNRLRCI---------PPRTFDGLKSLRLLSLHGNDISVVPE--------------------------GAFNDLSA 127 (193)
T ss_dssp EECCSSCCCBC---------CTTTTTTCTTCCEEECCSSCCCBCCT--------------------------TTTTTCTT
T ss_pred EECCCCccCEe---------CHHHhCCCCCCCEEECCCCCCCeeCh--------------------------hhhhcCcc
Confidence 88876543211 12235556788888888875544442 22345778
Q ss_pred ccEEeeccC
Q 037108 168 LRELFLVSC 176 (239)
Q Consensus 168 L~~L~l~~~ 176 (239)
|++|++.+.
T Consensus 128 L~~L~L~~N 136 (193)
T 2wfh_A 128 LSHLAIGAN 136 (193)
T ss_dssp CCEEECCSS
T ss_pred ccEEEeCCC
Confidence 888888754
No 125
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=3.3e-06 Score=61.92 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=49.7
Q ss_pred CcCCcccEEeeccCccccc----cccCC---CCcccEEEecccccccc----ccCCCCcccEEEecccCccccc
Q 037108 163 EGLADLRELFLVSCSKLQR----TLLEY---LPSLETLVIRKCEQLLV----SILSLPTLRKLTVNGCKEVVGR 225 (239)
Q Consensus 163 ~~~~~L~~L~l~~~~~L~~----~~p~~---l~~L~~L~l~~c~~l~~----~~~~l~~L~~L~i~~c~~l~~~ 225 (239)
..+++|++|++++|..++. .+... .++|++|++++|++++. .+..+++|++|++++|+.+...
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 3588999999999987762 23321 35899999999998864 4567899999999999988743
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.12 E-value=2.6e-06 Score=63.69 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=72.9
Q ss_pred ccCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccc
Q 037108 5 IKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRN 84 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~ 84 (239)
.+|++|+++++ .++.+|..++++++|++|++....- .......+..+++|+ .|++.+.. .....+..+..+++
T Consensus 31 ~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i-~~i~~~~f~~l~~L~-~L~Ls~N~----l~~i~~~~f~~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLL-TLILSYNR----LRCIPPRTFDGLKS 103 (193)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCC-CCCCTTTTTTCTTCC-EEECCSSC----CCBCCTTTTTTCTT
T ss_pred CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcC-CEeCHhHccCCCCCC-EEECCCCc----cCEeCHHHhCCCCC
Confidence 57999999999 5899999999999999998754332 112223466777777 77765432 22233345778889
Q ss_pred cccceeEEcCCCCCCCCCcchHHHh-hcCCCCCCcceEEEeccC
Q 037108 85 LKDLLLEWNNSTSNIREPETDTCVL-DLLKPHQSLKKLKINGYG 127 (239)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~ 127 (239)
|+.|+++.+.... +. ..+..+++|+.+++.++.
T Consensus 104 L~~L~L~~N~l~~----------~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 104 LRLLSLHGNDISV----------VPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCEEECCSSCCCB----------CCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCCCCe----------eChhhhhcCccccEEEeCCCC
Confidence 9999998664321 11 234557899999998764
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.09 E-value=1.3e-06 Score=64.25 Aligned_cols=134 Identities=18% Similarity=0.105 Sum_probs=83.2
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCc-cCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLT-SLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG 81 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~-~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~ 81 (239)
+..+|++|++++| .++.+|. ++.+. +|++|++....- ..+..++.+++|+ .+.+.+.. + ....+..+..
T Consensus 17 ~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l---~~~~~l~~l~~L~-~L~Ls~N~-l---~~~~~~~~~~ 86 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEI---RKLDGFPLLRRLK-TLLVNNNR-I---CRIGEGLDQA 86 (176)
T ss_dssp CTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCC---CEECCCCCCSSCC-EEECCSSC-C---CEECSCHHHH
T ss_pred CcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCCC---CcccccccCCCCC-EEECCCCc-c---cccCcchhhc
Confidence 5678999999999 5888874 66666 999998754322 1234566677777 67664432 1 1111112356
Q ss_pred ccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCC
Q 037108 82 KRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKS 161 (239)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~ 161 (239)
+++|+.|+++.+.... ...+..+..+++|+.|++.++.....|.+... .
T Consensus 87 l~~L~~L~L~~N~i~~--------~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~-----------------------~ 135 (176)
T 1a9n_A 87 LPDLTELILTNNSLVE--------LGDLDPLASLKSLTYLCILRNPVTNKKHYRLY-----------------------V 135 (176)
T ss_dssp CTTCCEEECCSCCCCC--------GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHH-----------------------H
T ss_pred CCCCCEEECCCCcCCc--------chhhHhhhcCCCCCEEEecCCCCCCcHhHHHH-----------------------H
Confidence 6789999988654211 11122455678899999988765544442100 1
Q ss_pred CCcCCcccEEeeccCc
Q 037108 162 DEGLADLRELFLVSCS 177 (239)
Q Consensus 162 ~~~~~~L~~L~l~~~~ 177 (239)
++.+++|++|+++++.
T Consensus 136 ~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 136 IYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHCTTCSEETTEECC
T ss_pred HHHCCccceeCCCcCC
Confidence 2457888998888764
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.02 E-value=2.5e-06 Score=74.42 Aligned_cols=109 Identities=15% Similarity=0.081 Sum_probs=75.6
Q ss_pred cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108 6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL 85 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L 85 (239)
.|++|++++| .++.+|. +++|++|++|++....-. ..+..++++++|+ .|.+.+.. +.. .+ .+..+++|
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~-~L~Ls~N~-l~~----lp-~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLE-VLQASDNA-LEN----VD-GVANLPRL 510 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCC-EEECCSSC-CCC----CG-GGTTCSSC
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCccccc--ccchhhhcCCCCC-EEECCCCC-CCC----Cc-ccCCCCCC
Confidence 5889999999 5888997 999999999987554322 2335677788888 77775432 211 22 67788899
Q ss_pred ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccc
Q 037108 86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAI 133 (239)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 133 (239)
+.|+++.+..... ..+..+..+++|+.|++.++.....|.
T Consensus 511 ~~L~Ls~N~l~~~--------~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 511 QELLLCNNRLQQS--------AAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CEEECCSSCCCSS--------STTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred cEEECCCCCCCCC--------CCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 9999986543211 014556667899999999887655544
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.02 E-value=4.6e-06 Score=74.84 Aligned_cols=110 Identities=15% Similarity=-0.041 Sum_probs=64.7
Q ss_pred CCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCCcccEEeeccCccccccccC---CCC
Q 037108 112 LKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLADLRELFLVSCSKLQRTLLE---YLP 188 (239)
Q Consensus 112 l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~p~---~l~ 188 (239)
+..+.+|+.|+++++....+|..+..+..-. .|.+.+. .+. ..|..++.+++|++|+++++ +++ .+|. .++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~-~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLT-RLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHN-RLT-SLPAELGSCF 293 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCS-CCBCTTS-CCS--CCCGGGGGGTTCCEEECTTS-CCS-SCCSSGGGGT
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCC-EEEeeCC-cCc--ccChhhhCCCCCCEEeCcCC-cCC-ccChhhcCCC
Confidence 3445566677776665555554321110000 0111111 111 11344567899999999977 576 7775 568
Q ss_pred cccEEEecccc--ccccccCCCCcccEEEecccCccccccc
Q 037108 189 SLETLVIRKCE--QLLVSILSLPTLRKLTVNGCKEVVGRAI 227 (239)
Q Consensus 189 ~L~~L~l~~c~--~l~~~~~~l~~L~~L~i~~c~~l~~~~~ 227 (239)
+|++|+++++. .++..+..+++|+.|++++++--...+.
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 89999998764 4555678889999999998764433333
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.01 E-value=3.1e-06 Score=63.18 Aligned_cols=107 Identities=17% Similarity=0.132 Sum_probs=73.4
Q ss_pred cCcEEeCCCCCCCcccCcc--CCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 6 KLHHLNNPSTDSLEEMPQG--IGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~--i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
+|++|+++++ .++.+|.. ++++++|++|++....- .......++.+++|+ .|++.+.. .....+..+..++
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~-~L~Ls~N~----l~~~~~~~~~~l~ 102 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQ-ELQLGENK----IKEISNKMFLGLH 102 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCC-CCBCTTTTTTCTTCC-EEECCSCC----CCEECSSSSTTCT
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCC-CCcCHhHcCCcccCC-EEECCCCc----CCccCHHHhcCCC
Confidence 7999999999 58888864 89999999998754332 222234566777777 77765432 2223334577788
Q ss_pred ccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCC
Q 037108 84 NLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGG 128 (239)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 128 (239)
+|+.|+++.+.... ..+..+..+++|+.|++.++..
T Consensus 103 ~L~~L~L~~N~l~~---------~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 103 QLKTLNLYDNQISC---------VMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TCCEEECCSSCCCE---------ECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCEEECCCCcCCe---------eCHHHhhcCCCCCEEEeCCCCc
Confidence 99999998664321 1234566678999999988753
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.01 E-value=2e-05 Score=57.75 Aligned_cols=127 Identities=17% Similarity=0.124 Sum_probs=74.4
Q ss_pred CcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccc
Q 037108 7 LHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLK 86 (239)
Q Consensus 7 Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 86 (239)
.+.++++++ .++.+|.++. ++|++|++....- .......++++++|+ .+++.+.. ........+..+++|+
T Consensus 9 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~l~~n~l-~~~~~~~~~~l~~L~-~L~l~~n~----l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGIP--SSATRLELESNKL-QSLPHGVFDKLTQLT-KLSLSQNQ----IQSLPDGVFDKLTKLT 79 (177)
T ss_dssp TTEEECCSS-CCSSCCTTCC--TTCSEEECCSSCC-CCCCTTTTTTCTTCS-EEECCSSC----CCCCCTTTTTTCTTCC
T ss_pred CCEEEecCC-CCccCCCCCC--CCCcEEEeCCCcc-cEeCHHHhcCccccc-EEECCCCc----ceEeChhHccCCCccC
Confidence 467888887 5788886554 6788887644322 111222355666666 66664332 1122223356677888
Q ss_pred cceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCC
Q 037108 87 DLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLA 166 (239)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~ 166 (239)
.|+++.+..... ....+..+++|+.|++.++....+|.. .+..++
T Consensus 80 ~L~l~~N~l~~~---------~~~~~~~l~~L~~L~l~~N~l~~~~~~--------------------------~~~~l~ 124 (177)
T 2o6r_A 80 ILYLHENKLQSL---------PNGVFDKLTQLKELALDTNQLKSVPDG--------------------------IFDRLT 124 (177)
T ss_dssp EEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCSCCCTT--------------------------TTTTCT
T ss_pred EEECCCCCcccc---------CHHHhhCCcccCEEECcCCcceEeCHH--------------------------HhcCCc
Confidence 888875542211 112234567888888887755444431 234578
Q ss_pred cccEEeeccCc
Q 037108 167 DLRELFLVSCS 177 (239)
Q Consensus 167 ~L~~L~l~~~~ 177 (239)
+|++|++++++
T Consensus 125 ~L~~L~l~~N~ 135 (177)
T 2o6r_A 125 SLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCSSC
T ss_pred ccCEEEecCCC
Confidence 89999998763
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.98 E-value=1.1e-07 Score=71.52 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=20.2
Q ss_pred cCCcccEEeeccCcccccccc-----CCCCcccEEEecccc
Q 037108 164 GLADLRELFLVSCSKLQRTLL-----EYLPSLETLVIRKCE 199 (239)
Q Consensus 164 ~~~~L~~L~l~~~~~L~~~~p-----~~l~~L~~L~l~~c~ 199 (239)
.+++|++|+++++ ++. .++ ..+++|++|++.+++
T Consensus 113 ~l~~L~~L~l~~N-~i~-~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 113 KLVNLRVLYMSNN-KIT-NWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHSSEEEESEE-ECC-CHHHHHHHTTTTTCSEEEECSCH
T ss_pred cCCCCCEEECCCC-cCC-chhHHHHHhcCCCCCEEEecCCc
Confidence 4667777777765 343 222 146777777776654
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.74 E-value=0.00012 Score=53.47 Aligned_cols=57 Identities=25% Similarity=0.268 Sum_probs=39.0
Q ss_pred CCcCCcccEEeeccCccccccccC----CCCcccEEEecccc--cccc-ccCCCCcccEEEecccC
Q 037108 162 DEGLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE--QLLV-SILSLPTLRKLTVNGCK 220 (239)
Q Consensus 162 ~~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~--~l~~-~~~~l~~L~~L~i~~c~ 220 (239)
++.+++|++|+++++ +++ .+|. .+++|++|+++++. .+.. .+..+++|++|++.+++
T Consensus 72 ~~~l~~L~~L~l~~N-~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 72 FDKLTKLTILYLHEN-KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTCTTCCEEECCSS-CCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCccCEEECCCC-Ccc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 467888888888876 565 3332 46788888887764 2222 24567888888888764
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=7.1e-05 Score=60.49 Aligned_cols=75 Identities=16% Similarity=0.045 Sum_probs=45.0
Q ss_pred CCCcCCcccEEeeccCccccccccC----CCCccc-EEEecc-ccccc-cccCCCCcccEEEecccCccccccccccCcc
Q 037108 161 SDEGLADLRELFLVSCSKLQRTLLE----YLPSLE-TLVIRK-CEQLL-VSILSLPTLRKLTVNGCKEVVGRAINLSSSS 233 (239)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~-~L~l~~-c~~l~-~~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~ 233 (239)
.+..+++|+.+++.+. ++ .++. .+++|+ .+.+.+ ...+. ..+.++++|+++++.+..--...+..+.+++
T Consensus 245 aF~~~~~L~~l~l~~n--i~-~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN--LK-TIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV 321 (329)
T ss_dssp TTTTCTTCCEEECCTT--CC-EECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC
T ss_pred hhhCCCCCCEEECCcc--cc-eehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCc
Confidence 4556778888888753 55 5553 456777 777755 11222 2456788888888765332223344566666
Q ss_pred ceEee
Q 037108 234 SVVLW 238 (239)
Q Consensus 234 ~L~~~ 238 (239)
+|+.+
T Consensus 322 ~L~~l 326 (329)
T 3sb4_A 322 PSKLI 326 (329)
T ss_dssp CCCEE
T ss_pred chhhh
Confidence 66654
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.71 E-value=3.5e-06 Score=63.11 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=19.1
Q ss_pred CcccCcEEeCCCCCCCcccCccCCCCccCCccCceEe
Q 037108 3 NLIKLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVV 39 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~ 39 (239)
++.+|++|++++| .++.+| .++++++|++|++...
T Consensus 46 ~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 46 TLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN 80 (198)
T ss_dssp HTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE
T ss_pred cCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC
Confidence 3455566666555 355555 5555556665555443
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.69 E-value=9.1e-06 Score=59.61 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=65.7
Q ss_pred cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108 6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL 85 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L 85 (239)
+|++|++++| .++.+ +.++++++|++|++....-.. .....++.+++|+ .+.+.+.. +..... ...+..+++|
T Consensus 43 ~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~-~L~L~~N~-i~~~~~--~~~l~~l~~L 115 (176)
T 1a9n_A 43 QFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLT-ELILTNNS-LVELGD--LDPLASLKSL 115 (176)
T ss_dssp CCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCC-EEECCSCC-CCCGGG--GGGGGGCTTC
T ss_pred CCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccc-cCcchhhcCCCCC-EEECCCCc-CCcchh--hHhhhcCCCC
Confidence 8999999999 58888 679999999999875433211 0111135666666 77765432 221111 1256678889
Q ss_pred ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccC
Q 037108 86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYG 127 (239)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 127 (239)
+.|+++.+..... . ......+..+++|+.|++..+.
T Consensus 116 ~~L~l~~N~i~~~---~---~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 116 TYLCILRNPVTNK---K---HYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSSGGGGS---T---THHHHHHHHCTTCSEETTEECC
T ss_pred CEEEecCCCCCCc---H---hHHHHHHHHCCccceeCCCcCC
Confidence 9999886542110 0 0000123456789988887764
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.53 E-value=0.00011 Score=53.50 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=66.4
Q ss_pred cCcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccccc
Q 037108 6 KLHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNL 85 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L 85 (239)
..+.++++++ .++++|.++. ++|++|++....- .......++++++|+ .|++.+.. ........+.++++|
T Consensus 10 ~~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i-~~~~~~~~~~l~~L~-~L~Ls~N~----l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQI-TKLEPGVFDRLTQLT-RLDLDNNQ----LTVLPAGVFDKLTQL 80 (170)
T ss_dssp ETTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCC-CCCCTTTTTTCTTCS-EEECCSSC----CCCCCTTTTTTCTTC
T ss_pred CCCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcC-CccChhhhcCcccCC-EEECCCCC----cCccChhhccCCCCC
Confidence 3578899998 5899998775 8888887754322 112233466677777 77765432 222223345678889
Q ss_pred ccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCC
Q 037108 86 KDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGG 128 (239)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 128 (239)
+.|+++.+..... ....+..+++|+.|++.++..
T Consensus 81 ~~L~L~~N~l~~~---------~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 81 TQLSLNDNQLKSI---------PRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCccCEe---------CHHHhcCCCCCCEEEeCCCCC
Confidence 9999986643211 012355678999999988754
No 138
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.50 E-value=4.7e-05 Score=55.75 Aligned_cols=98 Identities=13% Similarity=0.206 Sum_probs=58.0
Q ss_pred ccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCc----ccccccceeEEcCC
Q 037108 20 EMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNG----KRNLKDLLLEWNNS 95 (239)
Q Consensus 20 ~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~----l~~L~~L~l~~~~~ 95 (239)
.+|..--.=.+|+.||+..+. .....+..+..+++|+ .|.+..+..+++ .....+.. .++|+.|+++.|..
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~-~L~L~~C~~ItD---~gL~~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSC-IMSIGFDHMEGLQYVE-KIRLCKCHYIED---GCLERLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCC-CCGGGGGGGTTCSCCC-EEEEESCTTCCH---HHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred cCCcccCCCceEeEEeCcCCC-ccHHHHHHhcCCCCCC-EEEeCCCCccCH---HHHHHHHhcccccCCCCEEEcCCCCc
Confidence 456432222457777776554 3444566677777777 788877766443 22233333 24688888886642
Q ss_pred CCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCC
Q 037108 96 TSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTK 130 (239)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 130 (239)
. ... -+..+..+++|+.|++.+|...+
T Consensus 127 I-------TD~-Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 127 V-------TDK-GIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp C-------CHH-HHHHGGGCTTCCEEEEESCTTCC
T ss_pred C-------CHH-HHHHHhcCCCCCEEECCCCCCCC
Confidence 2 122 23445567888888888886544
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.49 E-value=0.00018 Score=52.63 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=65.8
Q ss_pred CcEEeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccc
Q 037108 7 LHHLNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLK 86 (239)
Q Consensus 7 Lr~L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 86 (239)
-+.++++++ .++++|.++. ++|++|++....- .......++++++|+ .|++.+.. ........+.++++|+
T Consensus 14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~-~L~Ls~N~----l~~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQI-TKLEPGVFDHLVNLQ-QLYFNSNK----LTAIPTGVFDKLTQLT 84 (174)
T ss_dssp SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCC-CCCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTCTTCC
T ss_pred CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCc-cccCHHHhcCCcCCC-EEECCCCC----CCccChhHhCCcchhh
Confidence 367888888 5889998776 7888887654322 122234466677777 77765432 1222223456778899
Q ss_pred cceeEEcCCCCCCCCCcchHHHhh-cCCCCCCcceEEEeccCCCC
Q 037108 87 DLLLEWNNSTSNIREPETDTCVLD-LLKPHQSLKKLKINGYGGTK 130 (239)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~ 130 (239)
.|+++.+.... +.. .+..+++|+.|++.++....
T Consensus 85 ~L~L~~N~l~~----------l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 85 QLDLNDNHLKS----------IPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp EEECCSSCCCC----------CCTTTTTTCTTCSEEECCSSCBCT
T ss_pred EEECCCCccce----------eCHHHhccccCCCEEEeCCCCccc
Confidence 99988654321 222 25567899999998876443
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.44 E-value=9.2e-05 Score=53.94 Aligned_cols=84 Identities=12% Similarity=0.091 Sum_probs=56.6
Q ss_pred cccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcc
Q 037108 4 LIKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGK 82 (239)
Q Consensus 4 L~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l 82 (239)
..+|++|++++| .++.+ |..++++++|++|++....-. ......++++++|+ .|++.+.. ........+..+
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~-~L~L~~N~----l~~~~~~~~~~l 101 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLT-QLSLNDNQ----LKSIPRGAFDNL 101 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTC
T ss_pred CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCC-EEECCCCc----cCEeCHHHhcCC
Confidence 367999999999 58888 566999999999987543321 11222356677777 77765432 222223446778
Q ss_pred cccccceeEEcC
Q 037108 83 RNLKDLLLEWNN 94 (239)
Q Consensus 83 ~~L~~L~l~~~~ 94 (239)
++|+.|+++.+.
T Consensus 102 ~~L~~L~L~~N~ 113 (170)
T 3g39_A 102 KSLTHIWLLNNP 113 (170)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEEeCCCC
Confidence 899999998654
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.41 E-value=0.0001 Score=53.91 Aligned_cols=83 Identities=11% Similarity=0.121 Sum_probs=55.8
Q ss_pred ccCcEEeCCCCCCCccc-CccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCccc
Q 037108 5 IKLHHLNNPSTDSLEEM-PQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKR 83 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~l-P~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~ 83 (239)
.+|++|++++| .+..+ |..++++++|++|++....-. ......++++++|+ .|++.+.. ........+..++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~-~L~L~~N~----l~~l~~~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLT-QLDLNDNH----LKSIPRGAFDNLK 105 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTCT
T ss_pred CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhh-EEECCCCc----cceeCHHHhcccc
Confidence 67999999999 47887 567899999999987543321 11112246677777 77765432 1222223467788
Q ss_pred ccccceeEEcC
Q 037108 84 NLKDLLLEWNN 94 (239)
Q Consensus 84 ~L~~L~l~~~~ 94 (239)
+|+.|+++.+.
T Consensus 106 ~L~~L~L~~N~ 116 (174)
T 2r9u_A 106 SLTHIYLYNNP 116 (174)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 99999998654
No 142
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.30 E-value=0.00021 Score=58.65 Aligned_cols=166 Identities=18% Similarity=0.122 Sum_probs=87.1
Q ss_pred ccCccCCCCccCCccCceEeccCC-------CCCh-hhhcccccccceEEEEeccCCCChhHHHHhccCcccccccceeE
Q 037108 20 EMPQGIGKLTSLRTMCKFVVGNEI-------GSGL-RQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLLLE 91 (239)
Q Consensus 20 ~lP~~i~~L~~L~~L~~~~~~~~~-------~~~i-~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 91 (239)
.++..+.++++|+.|.+....... ...+ .-+..+++|+ .|.+.+..+.. . ..+ ..++|+.|.+.
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~-~L~L~g~~~l~-l-----~~~-~~~~L~~L~L~ 201 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLN-NLKIKGTNNLS-I-----GKK-PRPNLKSLEII 201 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCC-EEEEECCBTCB-C-----CSC-BCTTCSEEEEE
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCc-EEEEeCCCCce-e-----ccc-cCCCCcEEEEe
Confidence 355667777888888553321110 1112 2245667788 88876542211 1 112 26789999987
Q ss_pred EcCCCCCCCCCcchHHHhhcC--CCCCCcceEEEeccCCCCccchhhhccCcceeeeeccCCCceeeCCCCCCCcCCccc
Q 037108 92 WNNSTSNIREPETDTCVLDLL--KPHQSLKKLKINGYGGTKFAIYTLSITGDSLFSRYARMGKWIPHGSGKSDEGLADLR 169 (239)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~p~~~l~l~~~~~~L~l~~~~~l~~~~~~~~~~~~~~L~ 169 (239)
.+.. . ......+ ..+++|+.|++........... .+..+ ... ...+.||+|+
T Consensus 202 ~~~l--------~-~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~-----------~~~~l---~~~---l~~~~~p~Lr 255 (362)
T 2ra8_A 202 SGGL--------P-DSVVEDILGSDLPNLEKLVLYVGVEDYGFDG-----------DMNVF---RPL---FSKDRFPNLK 255 (362)
T ss_dssp CSBC--------C-HHHHHHHHHSBCTTCCEEEEECBCGGGTCCS-----------CGGGT---GGG---SCTTTCTTCC
T ss_pred cCCC--------C-hHHHHHHHHccCCCCcEEEEeccccccccch-----------hHHHH---HHH---HhcCCCCCcC
Confidence 4431 1 1112222 2467899998863210000000 00000 000 1124589999
Q ss_pred EEeeccCcccc-c--ccc--CCCCcccEEEecccccccc--------ccCCCCcccEEEecccC
Q 037108 170 ELFLVSCSKLQ-R--TLL--EYLPSLETLVIRKCEQLLV--------SILSLPTLRKLTVNGCK 220 (239)
Q Consensus 170 ~L~l~~~~~L~-~--~~p--~~l~~L~~L~l~~c~~l~~--------~~~~l~~L~~L~i~~c~ 220 (239)
+|.+.+|..-. + .+. ..+|+|++|+++.+. +.. .+..+++|+.|++++|.
T Consensus 256 ~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 256 WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp EEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred EEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 99998774221 0 111 258899999996543 322 23457889999998874
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.14 E-value=0.00018 Score=58.43 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=32.9
Q ss_pred EeCCCCCCCcccCccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhccCcccccccce
Q 037108 10 LNNPSTDSLEEMPQGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQLNGKRNLKDLL 89 (239)
Q Consensus 10 L~l~~~~~~~~lP~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 89 (239)
++.++.+.++.+|. |+.+++|++|++...+.........++.|++|+ .|++.+.. .....+..+.++++|+.|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~-~L~l~~N~----l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELR-NLTIVKSG----LRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCS-EEECCSSC----CCEECTTGGGSCSCCCEEE
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCC-EEECCCCc----cceeCHHHhcCCcCCCEEe
Confidence 34444323555555 555555555554321111111122344455444 44443221 1112223344555566666
Q ss_pred eEEc
Q 037108 90 LEWN 93 (239)
Q Consensus 90 l~~~ 93 (239)
++.+
T Consensus 87 l~~N 90 (347)
T 2ifg_A 87 LSFN 90 (347)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5544
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.06 E-value=0.0003 Score=57.10 Aligned_cols=86 Identities=16% Similarity=0.143 Sum_probs=55.6
Q ss_pred CCCcccCcEEeCCC-CCCCcccC-ccCCCCccCCccCceEeccCCCCChhhhcccccccceEEEEeccCCCChhHHHHhc
Q 037108 1 MGNLIKLHHLNNPS-TDSLEEMP-QGIGKLTSLRTMCKFVVGNEIGSGLRQLKSLIHLQGTVCISRLENVKEISAAKEAQ 78 (239)
Q Consensus 1 i~~L~~Lr~L~l~~-~~~~~~lP-~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~L~~L~~~L~~~~~~~~~~~~~~~~~~ 78 (239)
|+.+.+|++|+|++ | .++.+| ..+++|++|++|++....- .+.....+++|++|+ .|++.+.. + .......
T Consensus 27 l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~-~L~l~~N~-l---~~~~~~~ 99 (347)
T 2ifg_A 27 LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLS-RLNLSFNA-L---ESLSWKT 99 (347)
T ss_dssp SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCC-CEECTTGGGSCSCCC-EEECCSSC-C---SCCCSTT
T ss_pred CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCcc-ceeCHHHhcCCcCCC-EEeCCCCc-c---ceeCHHH
Confidence 46788999999997 6 688988 5699999999998854321 222233467777777 77775432 1 1111222
Q ss_pred cCcccccccceeEEcC
Q 037108 79 LNGKRNLKDLLLEWNN 94 (239)
Q Consensus 79 l~~l~~L~~L~l~~~~ 94 (239)
+..++ |+.|.+..+.
T Consensus 100 ~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 100 VQGLS-LQELVLSGNP 114 (347)
T ss_dssp TCSCC-CCEEECCSSC
T ss_pred cccCC-ceEEEeeCCC
Confidence 33333 8888887554
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.84 E-value=0.00099 Score=54.64 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=38.2
Q ss_pred cCCcccEEeeccCcc-------ccc---ccc-CCCCcccEEEeccccccc------cccCCCCcccEEEecccCccc
Q 037108 164 GLADLRELFLVSCSK-------LQR---TLL-EYLPSLETLVIRKCEQLL------VSILSLPTLRKLTVNGCKEVV 223 (239)
Q Consensus 164 ~~~~L~~L~l~~~~~-------L~~---~~p-~~l~~L~~L~l~~c~~l~------~~~~~l~~L~~L~i~~c~~l~ 223 (239)
.+|+|++|++..+.+ +++ .+. ..+|+|+.|.+.+|.--. ...+.+|+|++|+++.+ .+.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~ 292 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLT 292 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCB
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCC
Confidence 589999999853211 210 111 258999999998876321 12357899999999764 444
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.82 E-value=2.1e-05 Score=64.92 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=49.7
Q ss_pred ccCcEEeCCCCCCCcccC-----ccCC-CCccCCccCceEeccCCCCChhhh-cccccccceEEEEeccCCCChh-HHHH
Q 037108 5 IKLHHLNNPSTDSLEEMP-----QGIG-KLTSLRTMCKFVVGNEIGSGLRQL-KSLIHLQGTVCISRLENVKEIS-AAKE 76 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~lP-----~~i~-~L~~L~~L~~~~~~~~~~~~i~~L-~~L~~L~~~L~~~~~~~~~~~~-~~~~ 76 (239)
.+|++|++++|. ++..+ ..+. +.++|++|++..+.- ....+..+ ..+++|+ .|++.+.. +.+.. ....
T Consensus 72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~-~L~Ls~n~-l~~~~~~~L~ 147 (372)
T 3un9_A 72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRAR-KLGLQLNS-LGPEACKDLR 147 (372)
T ss_dssp TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEE-EEECCSSC-CCHHHHHHHH
T ss_pred hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhcc-HhhcCCCC-CCHHHHHHHH
Confidence 568888888884 55432 1122 225777776643221 11111111 1233344 45443321 11110 1111
Q ss_pred hcc-CcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccC
Q 037108 77 AQL-NGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYG 127 (239)
Q Consensus 77 ~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 127 (239)
..+ ...++|+.|+++++... ......+.+.+...++|++|+++++.
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~-----~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLT-----AAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCH-----HHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HHHHhcCCccceeeCCCCCCC-----hHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 112 23356777776654310 11122334444455667777776654
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.76 E-value=0.0024 Score=51.41 Aligned_cols=70 Identities=10% Similarity=0.037 Sum_probs=46.4
Q ss_pred CCcccEEeeccCccccccccC----CCCcccEEEeccc-ccccc-ccCCCCccc-EEEecccCccccc-cccccCccceE
Q 037108 165 LADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKC-EQLLV-SILSLPTLR-KLTVNGCKEVVGR-AINLSSSSSVV 236 (239)
Q Consensus 165 ~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c-~~l~~-~~~~l~~L~-~L~i~~c~~l~~~-~~~~~~l~~L~ 236 (239)
+++|+.+++.++ +++ .+|. .+++|+++.+.+. ..+.. .+.++++|+ .+.+.+ +++.+ +..+..+++|+
T Consensus 225 ~~~L~~l~L~~n-~i~-~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKT-NAT-TIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTB-CCC-EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCC-Ccc-eecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 678899998865 465 6664 4678888888652 22222 456788898 999876 55433 35566666666
Q ss_pred ee
Q 037108 237 LW 238 (239)
Q Consensus 237 ~~ 238 (239)
.+
T Consensus 301 ~l 302 (329)
T 3sb4_A 301 YV 302 (329)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.05 E-value=0.08 Score=43.86 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=16.4
Q ss_pred cCcEEeCCCCCCCcccCc-cCCCCccCCccCc
Q 037108 6 KLHHLNNPSTDSLEEMPQ-GIGKLTSLRTMCK 36 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~-~i~~L~~L~~L~~ 36 (239)
+|+.+.+.+. ++.++. .+.++++|+.+++
T Consensus 158 ~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 158 TVQEIVFPST--LEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp CCCEEECCTT--CCEECSSTTTTCTTCCEEEC
T ss_pred CceEEEeCCC--ccEehHHHhhCcccCCeeec
Confidence 4566666553 555653 3556666666644
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.40 E-value=0.003 Score=49.49 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=25.3
Q ss_pred CcccCcEEeCCCCCCCcccC---ccCCCCccCCccCce
Q 037108 3 NLIKLHHLNNPSTDSLEEMP---QGIGKLTSLRTMCKF 37 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~lP---~~i~~L~~L~~L~~~ 37 (239)
++.+|+.|+|++|. +..++ ..++++++|++|++.
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls 204 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLS 204 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECT
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECC
Confidence 46789999999984 66544 556788888888774
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.16 E-value=0.0054 Score=45.11 Aligned_cols=117 Identities=13% Similarity=0.075 Sum_probs=63.3
Q ss_pred CcccCcEEeCCCCCCCcc-----cCccCCCCccCCccCceEeccCCCCC---h-hhhcccccccceEEEEeccCCCC-hh
Q 037108 3 NLIKLHHLNNPSTDSLEE-----MPQGIGKLTSLRTMCKFVVGNEIGSG---L-RQLKSLIHLQGTVCISRLENVKE-IS 72 (239)
Q Consensus 3 ~L~~Lr~L~l~~~~~~~~-----lP~~i~~L~~L~~L~~~~~~~~~~~~---i-~~L~~L~~L~~~L~~~~~~~~~~-~~ 72 (239)
...+|++|++++|..++. +...+.+.++|++|++..+.-. ... + ..+...+.|+ .|++.+.. +.+ ..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~-~~g~~~l~~~L~~n~~L~-~L~L~~N~-i~~~g~ 110 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN-DPVAFALAEMLKVNNTLK-SLNVESNF-ISGSGI 110 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC-HHHHHHHHHHHHHCSSCC-EEECCSSC-CCHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC-hHHHHHHHHHHHhCCCcC-EEECcCCc-CCHHHH
Confidence 456789999988722432 4556677788888877433211 111 1 1233445566 66664432 111 11
Q ss_pred HHHHhccCccccccccee--EEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccC
Q 037108 73 AAKEAQLNGKRNLKDLLL--EWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYG 127 (239)
Q Consensus 73 ~~~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 127 (239)
......+...+.|+.|++ .++.. .......+.+.+...+.|+.|++.++.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i-----~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPL-----GNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCC-----CHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHhCCCceEEEecCCCCCC-----CHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 223345566667888888 54432 112223344555555678888887653
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.64 E-value=0.0014 Score=54.05 Aligned_cols=115 Identities=16% Similarity=0.109 Sum_probs=56.7
Q ss_pred ccCcEEeCCCCCCCccc--CccCCCCccCCccCceEeccCCCCChhhh-----cccccccceEEEEeccCCCC-hhHHHH
Q 037108 5 IKLHHLNNPSTDSLEEM--PQGIGKLTSLRTMCKFVVGNEIGSGLRQL-----KSLIHLQGTVCISRLENVKE-ISAAKE 76 (239)
Q Consensus 5 ~~Lr~L~l~~~~~~~~l--P~~i~~L~~L~~L~~~~~~~~~~~~i~~L-----~~L~~L~~~L~~~~~~~~~~-~~~~~~ 76 (239)
.+|++|++++|. ++.- ..-...+++|++|++..+.- .......+ ...+.|+ .|++.+.. +.+ ......
T Consensus 101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l-~~~~~~~L~~~L~~~~~~L~-~L~Ls~n~-l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSL-GPEACKDLRDLLLHDQCQIT-TLRLSNNP-LTAAGVAVLM 176 (372)
T ss_dssp SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCC-CHHHHHHHHHHHHSTTCCCC-EEECCSSC-CHHHHHHHHH
T ss_pred CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCC-CHHHHHHHHHHHHhcCCccc-eeeCCCCC-CChHHHHHHH
Confidence 578888888884 5431 11123456777777643321 11111222 1234455 56654432 111 111222
Q ss_pred hccCcccccccceeEEcCCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCC
Q 037108 77 AQLNGKRNLKDLLLEWNNSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGG 128 (239)
Q Consensus 77 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 128 (239)
..+...++|+.|+++++... ......+.+.+...++|+.|+++++..
T Consensus 177 ~~L~~~~~L~~L~Ls~N~l~-----~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTGLG-----DEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHHTCSSCCEEECTTSSCH-----HHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHHhcCCCcCEEeCCCCCCC-----cHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 33445567788877754311 111223445555556788888877654
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.55 E-value=0.023 Score=44.36 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=48.1
Q ss_pred cCCcccEEeeccCccccc--cccC---CCCcccEEEecccc--ccccccCCCC--cccEEEecccCccccc-------cc
Q 037108 164 GLADLRELFLVSCSKLQR--TLLE---YLPSLETLVIRKCE--QLLVSILSLP--TLRKLTVNGCKEVVGR-------AI 227 (239)
Q Consensus 164 ~~~~L~~L~l~~~~~L~~--~~p~---~l~~L~~L~l~~c~--~l~~~~~~l~--~L~~L~i~~c~~l~~~-------~~ 227 (239)
.+|+|++|+++++ ++.+ .+|. .+|+|+.|++++.. .+ ..+..+. +|++|.+.+++--... ..
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4889999999976 6653 3342 68999999998644 23 2333333 8999999987743211 12
Q ss_pred cccCccceEeeC
Q 037108 228 NLSSSSSVVLWD 239 (239)
Q Consensus 228 ~~~~l~~L~~~~ 239 (239)
.+..+++|+.+|
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 345566666654
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.77 E-value=0.025 Score=41.46 Aligned_cols=121 Identities=18% Similarity=0.098 Sum_probs=64.3
Q ss_pred hhHHHHhccCcccccccceeEEc-CCCCCCCCCcchHHHhhcCCCCCCcceEEEeccCCCCcc-chhhhccCcceeeeec
Q 037108 71 ISAAKEAQLNGKRNLKDLLLEWN-NSTSNIREPETDTCVLDLLKPHQSLKKLKINGYGGTKFA-IYTLSITGDSLFSRYA 148 (239)
Q Consensus 71 ~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~l~l~~~~~~L~l~ 148 (239)
........+...+.|++|+++.+ .. .......+.+.+...++|+.|+++++....-. ..+.
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i-----~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~------------ 86 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNI-----PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA------------ 86 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTC-----CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH------------
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCC-----CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH------------
Confidence 44444455666677888877744 21 11223445555666678888888776432100 0000
Q ss_pred cCCCceeeCCCCCCCcCCcccEEeeccCccccc----ccc---CCCCcccEEEe--cccc-------ccccccCCCCccc
Q 037108 149 RMGKWIPHGSGKSDEGLADLRELFLVSCSKLQR----TLL---EYLPSLETLVI--RKCE-------QLLVSILSLPTLR 212 (239)
Q Consensus 149 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~L~~----~~p---~~l~~L~~L~l--~~c~-------~l~~~~~~l~~L~ 212 (239)
......++|++|++++| .+.. .+. ...++|++|++ .++. .+...+...++|+
T Consensus 87 -----------~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~ 154 (185)
T 1io0_A 87 -----------EMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLL 154 (185)
T ss_dssp -----------HHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCC
T ss_pred -----------HHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcC
Confidence 00112456778888766 3431 111 13567888888 4433 1222344557788
Q ss_pred EEEecccC
Q 037108 213 KLTVNGCK 220 (239)
Q Consensus 213 ~L~i~~c~ 220 (239)
+|++++|.
T Consensus 155 ~L~L~~n~ 162 (185)
T 1io0_A 155 KFGYHFTQ 162 (185)
T ss_dssp EEECCCSS
T ss_pred EEeccCCC
Confidence 88887764
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=86.22 E-value=0.41 Score=32.75 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=23.2
Q ss_pred cCcEEeCCCCCCCcccCcc-CCCCccCCccCce
Q 037108 6 KLHHLNNPSTDSLEEMPQG-IGKLTSLRTMCKF 37 (239)
Q Consensus 6 ~Lr~L~l~~~~~~~~lP~~-i~~L~~L~~L~~~ 37 (239)
+|++|+|++| .++.+|.+ +..+.+|++|++.
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLG 63 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECC
T ss_pred CCCEEECCCC-cCCccChhhhhhccccCEEEec
Confidence 6888888888 58888865 4667778777654
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=76.46 E-value=12 Score=30.70 Aligned_cols=50 Identities=12% Similarity=0.254 Sum_probs=26.7
Q ss_pred CcccEEeeccCccccccccC----CCCcccEEEeccccc-------cc-cccCCCCcccEEEecc
Q 037108 166 ADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCEQ-------LL-VSILSLPTLRKLTVNG 218 (239)
Q Consensus 166 ~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~~-------l~-~~~~~l~~L~~L~i~~ 218 (239)
.+|+.+.+.+ .++ .++. .+++|+.+.+.+... +. ..+..+++|+.+.+.+
T Consensus 248 ~~L~~i~lp~--~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 248 SGITTVKLPN--GVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CCCSEEEEET--TCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CCccEEEeCC--Ccc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 4566666632 233 3332 456777777654221 21 1455677777777763
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=67.39 E-value=12 Score=30.36 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=7.6
Q ss_pred cCCCCcccEEEecc
Q 037108 205 ILSLPTLRKLTVNG 218 (239)
Q Consensus 205 ~~~l~~L~~L~i~~ 218 (239)
+.++++|+.+.+.+
T Consensus 353 F~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 353 FSNCTALNNIEYSG 366 (394)
T ss_dssp GTTCTTCCEEEESS
T ss_pred hhCCCCCCEEEECC
Confidence 34555666665554
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=65.65 E-value=5.8 Score=26.82 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=24.3
Q ss_pred CCcccEEeeccCccccccccC----CCCcccEEEecccc
Q 037108 165 LADLRELFLVSCSKLQRTLLE----YLPSLETLVIRKCE 199 (239)
Q Consensus 165 ~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~c~ 199 (239)
.++|++|+++++ +++ .+|. .+++|+.|++.+.+
T Consensus 30 p~~l~~L~Ls~N-~l~-~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 30 PVDTTELVLTGN-NLT-ALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CTTCSEEECTTS-CCS-SCCTTTGGGCTTCCEEECCSSC
T ss_pred CcCCCEEECCCC-cCC-ccChhhhhhccccCEEEecCCC
Confidence 457999999865 676 6654 57888899888644
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=62.46 E-value=21 Score=28.83 Aligned_cols=51 Identities=8% Similarity=0.083 Sum_probs=27.9
Q ss_pred CCcccEEEecc-cccccc-ccCCCCcccEEEecccCccccccccccCccceEeeC
Q 037108 187 LPSLETLVIRK-CEQLLV-SILSLPTLRKLTVNGCKEVVGRAINLSSSSSVVLWD 239 (239)
Q Consensus 187 l~~L~~L~l~~-c~~l~~-~~~~l~~L~~L~i~~c~~l~~~~~~~~~l~~L~~~~ 239 (239)
..+|+.+.+.. ...+.. .+.++++|+++.+.+ .++.....+.++++|+.|.
T Consensus 342 c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~IK 394 (394)
T 4fs7_A 342 CTSLSNINFPLSLRKIGANAFQGCINLKKVELPK--RLEQYRYDFEDTTKFKWIK 394 (394)
T ss_dssp CTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEEC
T ss_pred CCCCCEEEECccccEehHHHhhCCCCCCEEEECC--CCEEhhheecCCCCCcEEC
Confidence 34555555532 112211 345677788887753 3444445677777777653
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=57.48 E-value=34 Score=27.61 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=18.3
Q ss_pred CCCcccEEEecc-cccccc-ccCCCCcccEEEec
Q 037108 186 YLPSLETLVIRK-CEQLLV-SILSLPTLRKLTVN 217 (239)
Q Consensus 186 ~l~~L~~L~l~~-c~~l~~-~~~~l~~L~~L~i~ 217 (239)
...+|+.+.+-+ ...+.. .+.++.+|+++.+-
T Consensus 309 ~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 309 GCISLKSIDIPEGITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEC
T ss_pred CCCCcCEEEeCCcccEehHhHhhCCCCCCEEEEC
Confidence 346777777632 222211 35567788888774
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=35.61 E-value=57 Score=26.22 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=26.8
Q ss_pred CcCCcccEEeeccCccccccccC----CCCcccEEEecc-cccccc-ccCCCCcccEEEec
Q 037108 163 EGLADLRELFLVSCSKLQRTLLE----YLPSLETLVIRK-CEQLLV-SILSLPTLRKLTVN 217 (239)
Q Consensus 163 ~~~~~L~~L~l~~~~~L~~~~p~----~l~~L~~L~l~~-c~~l~~-~~~~l~~L~~L~i~ 217 (239)
....+|+.+.+.+ .++ .++. ...+|+.+.+.+ ...+.. .+.++.+|+++.+.
T Consensus 294 ~~~~~L~~i~l~~--~i~-~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 294 YGCSSLTEVKLLD--SVK-FIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TTCTTCCEEEECT--TCC-EECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCC
T ss_pred ccccccccccccc--ccc-eechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEEC
Confidence 3455666666642 243 4432 346677776632 222211 34566777777664
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=24.94 E-value=67 Score=25.49 Aligned_cols=8 Identities=25% Similarity=0.409 Sum_probs=3.5
Q ss_pred CcccEEee
Q 037108 166 ADLRELFL 173 (239)
Q Consensus 166 ~~L~~L~l 173 (239)
.+|+.+.+
T Consensus 263 ~~l~~i~l 270 (379)
T 4h09_A 263 TALKTLNF 270 (379)
T ss_dssp TTCCEEEE
T ss_pred ehhccccc
Confidence 34444444
Done!