BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037109
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OUR|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUR|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUS|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUS|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUU|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
pdb|2OUU|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
Length = 331
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 17/53 (32%)
Query: 40 SLILDEKLHLGSVLGATLIVCGL-----------------YAVLWGKGKEMKK 75
SL L+ + H V+G + C L YA W +G EMKK
Sbjct: 208 SLNLNNQSHRDRVIGLMMTACALCSVTKLWPVTKLTANDIYAEFWAEGDEMKK 260
>pdb|4AEL|A Chain A, Pde10a In Complex With The Inhibitor Az5
pdb|4AEL|B Chain B, Pde10a In Complex With The Inhibitor Az5
Length = 344
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 17/53 (32%)
Query: 40 SLILDEKLHLGSVLGATLIVCGL-----------------YAVLWGKGKEMKK 75
SL L+ + H V+G + C L YA W +G EMKK
Sbjct: 208 SLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKK 260
>pdb|4DDL|A Chain A, Pde10a Crystal Structure Complexed With Novel Inhibitor
pdb|4DDL|B Chain B, Pde10a Crystal Structure Complexed With Novel Inhibitor
Length = 338
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 17/53 (32%)
Query: 40 SLILDEKLHLGSVLGATLIVCGL-----------------YAVLWGKGKEMKK 75
SL L+ + H V+G + C L YA W +G EMKK
Sbjct: 202 SLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKK 254
>pdb|2WEY|A Chain A, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
pdb|2WEY|B Chain B, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
Length = 343
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 17/53 (32%)
Query: 40 SLILDEKLHLGSVLGATLIVCGL-----------------YAVLWGKGKEMKK 75
SL L+ + H V+G + C L YA W +G EMKK
Sbjct: 207 SLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKK 259
>pdb|3SN7|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SN7|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|4FCB|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCB|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
Length = 345
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 17/53 (32%)
Query: 40 SLILDEKLHLGSVLGATLIVCGL-----------------YAVLWGKGKEMKK 75
SL L+ + H V+G + C L YA W +G EMKK
Sbjct: 209 SLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKK 261
>pdb|4DFF|A Chain A, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
pdb|4DFF|B Chain B, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
Length = 352
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 17/53 (32%)
Query: 40 SLILDEKLHLGSVLGATLIVCGL-----------------YAVLWGKGKEMKK 75
SL L+ + H V+G + C L YA W +G EMKK
Sbjct: 216 SLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKK 268
>pdb|2OUV|A Chain A, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUV|B Chain B, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUY|A Chain A, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp.
pdb|2OUY|B Chain B, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp
Length = 331
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 17/53 (32%)
Query: 40 SLILDEKLHLGSVLGATLIVCGL-----------------YAVLWGKGKEMKK 75
SL L+ + H V+G + C L YA W +G EMKK
Sbjct: 208 SLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKK 260
>pdb|2OUN|A Chain A, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUN|B Chain B, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUP|A Chain A, Crystal Structure Of Pde10a
pdb|2OUP|B Chain B, Crystal Structure Of Pde10a
pdb|2OUQ|A Chain A, Crystal Structure Of Pde10a2 In Complex With Gmp
pdb|2OUQ|B Chain B, Crystal Structure Of Pde10a2 In Complex With Gmp
Length = 331
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 17/53 (32%)
Query: 40 SLILDEKLHLGSVLGATLIVCGL-----------------YAVLWGKGKEMKK 75
SL L+ + H V+G + C L YA W +G EMKK
Sbjct: 208 SLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKK 260
>pdb|4HEU|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HEU|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HF4|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
pdb|4HF4|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
Length = 318
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 17/53 (32%)
Query: 40 SLILDEKLHLGSVLGATLIVCGL-----------------YAVLWGKGKEMKK 75
SL L+ + H V+G + C L YA W +G EMKK
Sbjct: 202 SLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKK 254
>pdb|2Y0J|A Chain A, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation.
pdb|2Y0J|B Chain B, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation
Length = 340
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 17/53 (32%)
Query: 40 SLILDEKLHLGSVLGATLIVCGL-----------------YAVLWGKGKEMKK 75
SL L+ + H V+G + C L YA W +G EMKK
Sbjct: 212 SLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKK 264
>pdb|3UUO|A Chain A, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
pdb|3UUO|B Chain B, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
Length = 337
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 17/53 (32%)
Query: 40 SLILDEKLHLGSVLGATLIVCGL-----------------YAVLWGKGKEMKK 75
SL L+ + H V+G + C L YA W +G EMKK
Sbjct: 220 SLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKK 272
>pdb|3UI7|A Chain A, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
pdb|3UI7|B Chain B, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
Length = 333
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 17/53 (32%)
Query: 40 SLILDEKLHLGSVLGATLIVCGL-----------------YAVLWGKGKEMKK 75
SL L+ + H V+G + C L YA W +G EMKK
Sbjct: 216 SLNLNNQSHRDRVIGLMMTACDLCSVTKLWPVTKLTANDIYAEFWAEGDEMKK 268
>pdb|3Q7K|A Chain A, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|B Chain B, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|C Chain C, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|D Chain D, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|E Chain E, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|G Chain G, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|H Chain H, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|I Chain I, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|J Chain J, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|K Chain K, Formate Channel Foca From Salmonella Typhimurium
Length = 293
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 2 IVGSGLMVTMTSWCVHIRG 20
I+G GL+V +T W +++RG
Sbjct: 263 IIGGGLLVGLTYWVIYLRG 281
>pdb|4DNR|A Chain A, Crystal Structure Of The Cusba Heavy-metal Efflux Complex
From Escherichia Coli, E716f Mutant
Length = 1054
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 43 LDEKLHLGSVL-------GATLIVCGLYAVLWGKGKEMKKQSQL 79
LDE L+ G+VL +I+ GL +LWG G + S++
Sbjct: 976 LDEALYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRI 1019
>pdb|4DOP|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, R Mutant
Length = 1054
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 43 LDEKLHLGSVL-------GATLIVCGLYAVLWGKGKEMKKQSQL 79
LDE L+ G+VL +I+ GL +LWG G + S++
Sbjct: 976 LDEALYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRI 1019
>pdb|4DNT|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, Mutant
Length = 1054
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 43 LDEKLHLGSVL-------GATLIVCGLYAVLWGKGKEMKKQSQL 79
LDE L+ G+VL +I+ GL +LWG G + S++
Sbjct: 976 LDEALYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRI 1019
>pdb|3T51|A Chain A, Crystal Structures Of The Pre-Extrusion And Extrusion States
Of The Cusba Adaptor-Transporter Complex
pdb|3T53|A Chain A, Crystal Structures Of The Extrusion State Of The Cusba
Adaptor- Transporter Complex
pdb|3T56|A Chain A, Crystal Structure Of The Pre-Extrusion State Of The Cusba
Adaptor- Transporter Complex
Length = 1054
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 43 LDEKLHLGSVL-------GATLIVCGLYAVLWGKGKEMKKQSQL 79
LDE L+ G+VL +I+ GL +LWG G + S++
Sbjct: 976 LDEALYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRI 1019
>pdb|3NE5|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli
Length = 1054
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 43 LDEKLHLGSVL-------GATLIVCGLYAVLWGKGKEMKKQSQL 79
LDE L+ G+VL +I+ GL +LWG G + S++
Sbjct: 976 LDEALYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRI 1019
>pdb|3K07|A Chain A, Crystal Structure Of Cusa
pdb|3KSO|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter Cusa
pdb|3KSS|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter Cusa
pdb|3K0I|A Chain A, Crystal Structure Of Cu(I)cusa
Length = 1055
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 43 LDEKLHLGSVL-------GATLIVCGLYAVLWGKGKEMKKQSQL 79
LDE L+ G+VL +I+ GL +LWG G + S++
Sbjct: 977 LDEALYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRI 1020
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,573,842
Number of Sequences: 62578
Number of extensions: 67516
Number of successful extensions: 100
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 21
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)