Query 037109
Match_columns 118
No_of_seqs 148 out of 1061
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:46:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 99.7 2.3E-17 5E-22 136.1 7.4 71 4-74 265-335 (358)
2 PRK10532 threonine and homoser 99.5 4.1E-14 8.9E-19 112.1 6.5 74 1-74 215-288 (293)
3 PRK11453 O-acetylserine/cystei 99.4 1.4E-13 3.1E-18 109.1 6.2 70 1-70 221-290 (299)
4 PRK11689 aromatic amino acid e 99.4 2E-13 4.3E-18 108.3 6.3 68 3-70 223-290 (295)
5 PRK11272 putative DMT superfam 99.3 1.3E-12 2.8E-17 103.3 5.9 71 1-71 219-289 (292)
6 PRK15430 putative chlorampheni 99.2 2.9E-11 6.4E-16 95.9 6.5 64 4-67 222-285 (296)
7 PF00892 EamA: EamA-like trans 99.2 5.5E-11 1.2E-15 80.1 6.4 66 1-66 60-125 (126)
8 TIGR03340 phn_DUF6 phosphonate 99.2 3.1E-11 6.7E-16 94.8 5.4 63 2-64 218-280 (281)
9 PRK02971 4-amino-4-deoxy-L-ara 99.1 1E-10 2.2E-15 84.9 6.3 71 1-71 54-126 (129)
10 TIGR00817 tpt Tpt phosphate/ph 99.1 2.8E-11 6.1E-16 95.6 3.0 68 5-72 227-298 (302)
11 TIGR00950 2A78 Carboxylate/Ami 99.1 1.5E-10 3.3E-15 88.3 4.9 62 1-62 198-259 (260)
12 COG0697 RhaT Permeases of the 98.9 2.4E-09 5.2E-14 81.1 6.6 68 1-68 221-288 (292)
13 PTZ00343 triose or hexose phos 98.9 2.7E-09 5.8E-14 87.3 6.0 67 2-68 279-349 (350)
14 PF13536 EmrE: Multidrug resis 98.8 2.1E-08 4.6E-13 69.6 6.3 67 4-71 44-110 (113)
15 PRK15051 4-amino-4-deoxy-L-ara 98.7 6.1E-08 1.3E-12 68.4 6.2 64 3-66 45-108 (111)
16 COG2510 Predicted membrane pro 98.6 2.5E-08 5.3E-13 73.8 3.7 64 3-66 75-138 (140)
17 PRK15430 putative chlorampheni 98.5 3.5E-07 7.6E-12 72.6 6.1 65 3-67 81-145 (296)
18 TIGR00950 2A78 Carboxylate/Ami 98.5 3.5E-07 7.5E-12 69.8 5.9 66 2-67 54-119 (260)
19 TIGR00776 RhaT RhaT L-rhamnose 98.5 2.2E-07 4.7E-12 74.2 4.9 66 2-68 219-289 (290)
20 COG5006 rhtA Threonine/homoser 98.4 2.1E-07 4.5E-12 75.6 4.4 74 1-74 216-289 (292)
21 TIGR03340 phn_DUF6 phosphonate 98.4 7.7E-07 1.7E-11 69.9 6.3 65 4-68 72-136 (281)
22 TIGR00688 rarD rarD protein. T 98.3 1.6E-06 3.4E-11 67.0 6.4 63 5-67 80-142 (256)
23 PRK10452 multidrug efflux syst 98.2 7.3E-06 1.6E-10 59.2 6.9 68 3-70 38-106 (120)
24 TIGR00817 tpt Tpt phosphate/ph 98.1 9.7E-06 2.1E-10 64.1 5.9 62 5-66 75-136 (302)
25 COG0697 RhaT Permeases of the 98.0 9.8E-06 2.1E-10 61.3 5.5 71 2-72 77-148 (292)
26 PLN00411 nodulin MtN21 family 98.0 1.1E-05 2.3E-10 67.0 6.0 62 7-68 90-157 (358)
27 PRK09541 emrE multidrug efflux 98.0 2.5E-05 5.4E-10 55.5 6.9 67 3-69 38-105 (110)
28 PRK11453 O-acetylserine/cystei 98.0 1.4E-05 3.1E-10 63.4 5.8 61 8-68 72-133 (299)
29 PRK11272 putative DMT superfam 97.9 1.9E-05 4.1E-10 62.5 5.7 62 6-68 80-142 (292)
30 PTZ00343 triose or hexose phos 97.9 2.6E-05 5.6E-10 63.9 5.9 60 8-67 127-186 (350)
31 TIGR00688 rarD rarD protein. T 97.7 2.5E-05 5.4E-10 60.3 3.4 39 4-42 217-255 (256)
32 PF03151 TPT: Triose-phosphate 97.7 7.2E-05 1.6E-09 52.9 5.2 57 10-66 96-152 (153)
33 COG2076 EmrE Membrane transpor 97.7 0.00015 3.3E-09 51.6 6.7 67 3-69 38-105 (106)
34 PF08449 UAA: UAA transporter 97.7 0.00013 2.8E-09 58.2 6.8 69 4-72 234-302 (303)
35 PF06027 DUF914: Eukaryotic pr 97.7 7.5E-05 1.6E-09 62.0 5.6 71 4-74 242-312 (334)
36 PRK10650 multidrug efflux syst 97.7 0.00016 3.4E-09 51.5 6.5 63 4-66 44-107 (109)
37 PRK11689 aromatic amino acid e 97.7 0.00011 2.4E-09 58.3 5.9 59 10-68 76-138 (295)
38 PRK11431 multidrug efflux syst 97.6 0.00023 4.9E-09 50.3 6.7 65 4-68 38-103 (105)
39 KOG4510 Permease of the drug/m 97.5 5.9E-05 1.3E-09 62.3 2.5 64 7-70 109-172 (346)
40 PF00893 Multi_Drug_Res: Small 97.4 0.00034 7.5E-09 47.6 5.3 55 4-58 38-93 (93)
41 TIGR00803 nst UDP-galactose tr 97.4 4E-05 8.7E-10 58.3 0.4 61 4-64 161-221 (222)
42 COG2962 RarD Predicted permeas 97.1 0.0013 2.9E-08 54.1 6.5 70 4-73 220-289 (293)
43 TIGR00776 RhaT RhaT L-rhamnose 97.1 0.00067 1.5E-08 54.2 4.7 62 7-68 71-137 (290)
44 PF04142 Nuc_sug_transp: Nucle 97.1 0.0012 2.7E-08 52.1 6.1 63 10-72 32-94 (244)
45 PF08449 UAA: UAA transporter 96.9 0.0023 5E-08 51.0 5.6 71 4-74 73-143 (303)
46 COG2962 RarD Predicted permeas 96.9 0.0018 3.9E-08 53.3 4.9 63 7-69 84-146 (293)
47 KOG1580 UDP-galactose transpor 96.7 0.0066 1.4E-07 49.8 6.9 64 3-66 249-312 (337)
48 PF06027 DUF914: Eukaryotic pr 96.6 0.0038 8.2E-08 51.9 5.2 65 6-70 90-154 (334)
49 PF10639 UPF0546: Uncharacteri 96.1 0.0089 1.9E-07 42.9 3.9 59 7-65 53-112 (113)
50 PF05653 Mg_trans_NIPA: Magnes 95.7 0.0078 1.7E-07 49.0 2.7 63 5-67 60-122 (300)
51 KOG1441 Glucose-6-phosphate/ph 95.7 0.0015 3.2E-08 54.1 -1.7 63 12-74 252-314 (316)
52 KOG2234 Predicted UDP-galactos 95.3 0.057 1.2E-06 45.5 6.3 60 11-70 108-167 (345)
53 KOG4510 Permease of the drug/m 95.2 0.019 4.1E-07 47.7 3.2 62 5-66 263-324 (346)
54 PF06800 Sugar_transport: Suga 95.2 0.065 1.4E-06 43.6 6.3 68 7-74 57-129 (269)
55 COG3169 Uncharacterized protei 93.9 0.12 2.5E-06 37.1 4.3 32 36-67 84-115 (116)
56 KOG1583 UDP-N-acetylglucosamin 93.9 0.082 1.8E-06 44.0 4.0 53 19-71 266-320 (330)
57 PF04342 DUF486: Protein of un 93.7 0.057 1.2E-06 38.7 2.5 30 36-65 77-106 (108)
58 KOG1581 UDP-galactose transpor 93.4 0.061 1.3E-06 44.9 2.6 66 4-69 250-315 (327)
59 KOG2765 Predicted membrane pro 93.2 0.13 2.9E-06 44.1 4.2 73 1-73 324-396 (416)
60 PRK10532 threonine and homoser 92.8 0.2 4.3E-06 39.7 4.6 57 5-67 81-137 (293)
61 KOG2234 Predicted UDP-galactos 92.7 0.3 6.6E-06 41.2 5.7 64 9-72 264-327 (345)
62 PF06800 Sugar_transport: Suga 91.4 0.35 7.6E-06 39.4 4.6 57 7-63 207-267 (269)
63 KOG4314 Predicted carbohydrate 91.3 0.13 2.9E-06 41.3 2.0 61 8-68 66-126 (290)
64 KOG1582 UDP-galactose transpor 91.1 0.81 1.7E-05 38.4 6.5 56 14-69 279-334 (367)
65 COG3086 RseC Positive regulato 91.1 0.36 7.9E-06 36.4 4.0 28 15-42 68-95 (150)
66 PRK13499 rhamnose-proton sympo 90.7 0.78 1.7E-05 38.5 6.1 66 7-72 85-158 (345)
67 KOG2765 Predicted membrane pro 90.1 0.19 4E-06 43.3 1.9 66 7-72 171-236 (416)
68 PF04246 RseC_MucC: Positive r 87.6 0.92 2E-05 32.4 3.9 24 20-43 66-89 (135)
69 KOG3912 Predicted integral mem 87.2 0.9 1.9E-05 38.2 4.0 64 5-68 96-159 (372)
70 KOG2922 Uncharacterized conser 86.8 0.096 2.1E-06 44.0 -1.8 56 19-74 88-143 (335)
71 PF11118 DUF2627: Protein of u 86.4 1.5 3.2E-05 29.8 4.0 58 23-80 4-73 (77)
72 PRK10862 SoxR reducing system 86.4 1.3 2.7E-05 33.0 4.1 25 19-43 72-96 (154)
73 COG5070 VRG4 Nucleotide-sugar 85.7 0.56 1.2E-05 38.4 2.1 54 4-57 233-286 (309)
74 PF04657 DUF606: Protein of un 84.9 2.8 6.1E-05 30.4 5.3 60 5-64 74-138 (138)
75 PRK02237 hypothetical protein; 83.5 4.9 0.00011 28.9 5.9 65 6-70 40-108 (109)
76 TIGR02840 spore_YtaF putative 83.3 0.9 1.9E-05 35.2 2.2 62 5-66 17-80 (206)
77 KOG1443 Predicted integral mem 82.9 1.8 4E-05 36.5 4.0 52 14-65 262-313 (349)
78 PRK13499 rhamnose-proton sympo 81.5 5.9 0.00013 33.3 6.6 61 7-68 272-342 (345)
79 PRK13108 prolipoprotein diacyl 80.1 7.8 0.00017 33.8 7.0 47 24-70 226-277 (460)
80 PF05653 Mg_trans_NIPA: Magnes 80.1 4 8.7E-05 33.3 5.0 67 4-70 222-295 (300)
81 PF04156 IncA: IncA protein; 78.7 8.7 0.00019 28.5 6.2 23 52-74 47-69 (191)
82 PF13994 PgaD: PgaD-like prote 78.0 3.2 6.9E-05 30.1 3.5 52 55-110 69-124 (138)
83 PF04142 Nuc_sug_transp: Nucle 77.5 2.7 5.8E-05 33.2 3.2 55 4-58 190-244 (244)
84 COG4975 GlcU Putative glucose 74.8 1 2.2E-05 37.1 0.1 84 8-95 72-160 (288)
85 KOG1442 GDP-fucose transporter 74.5 0.81 1.8E-05 38.3 -0.5 55 10-64 117-171 (347)
86 KOG1444 Nucleotide-sugar trans 73.6 7.8 0.00017 32.4 5.1 63 12-74 245-307 (314)
87 KOG4831 Unnamed protein [Funct 73.1 5.7 0.00012 28.9 3.6 58 8-65 65-123 (125)
88 PF04306 DUF456: Protein of un 72.5 16 0.00034 26.8 6.0 64 3-75 42-105 (140)
89 COG3238 Uncharacterized protei 72.2 9.4 0.0002 28.7 4.8 56 14-69 88-148 (150)
90 PF02694 UPF0060: Uncharacteri 71.9 6.8 0.00015 28.1 3.8 44 27-70 63-106 (107)
91 KOG1442 GDP-fucose transporter 71.3 0.99 2.2E-05 37.8 -0.7 52 33-84 293-344 (347)
92 KOG1443 Predicted integral mem 68.7 1.1 2.3E-05 37.9 -1.0 67 3-69 92-158 (349)
93 KOG1441 Glucose-6-phosphate/ph 67.4 0.56 1.2E-05 38.9 -2.9 58 7-64 95-152 (316)
94 PRK11469 hypothetical protein; 64.4 8 0.00017 29.6 3.1 46 21-66 40-86 (188)
95 PF11295 DUF3096: Protein of u 62.7 10 0.00022 22.6 2.7 33 32-64 1-33 (39)
96 KOG1583 UDP-N-acetylglucosamin 62.1 7.4 0.00016 32.6 2.7 47 29-75 99-145 (330)
97 COG2149 Predicted membrane pro 61.4 14 0.0003 27.0 3.7 44 5-69 32-75 (120)
98 KOG1580 UDP-galactose transpor 57.6 4.9 0.00011 33.3 0.9 42 31-72 121-162 (337)
99 PF02659 DUF204: Domain of unk 57.5 15 0.00033 22.9 3.0 54 5-58 8-63 (67)
100 PRK10655 potE putrescine trans 54.0 38 0.00082 28.0 5.6 48 30-77 389-436 (438)
101 PF06963 FPN1: Ferroportin1 (F 53.8 38 0.00083 29.1 5.8 60 4-66 305-367 (432)
102 PRK01637 hypothetical protein; 53.4 46 0.00099 26.5 5.8 21 54-74 253-273 (286)
103 PF06379 RhaT: L-rhamnose-prot 52.4 22 0.00048 30.2 4.0 63 9-71 87-157 (344)
104 COG1862 YajC Preprotein transl 51.5 26 0.00057 24.4 3.7 24 56-79 16-40 (97)
105 PF07857 DUF1632: CEO family ( 51.2 12 0.00026 30.2 2.2 25 48-72 115-139 (254)
106 KOG2766 Predicted membrane pro 49.3 16 0.00035 30.5 2.7 54 10-65 244-297 (336)
107 PRK15049 L-asparagine permease 49.2 1.2E+02 0.0026 26.0 8.0 11 28-38 422-432 (499)
108 PF15345 TMEM51: Transmembrane 47.1 17 0.00036 29.3 2.4 23 53-75 67-89 (233)
109 KOG3912 Predicted integral mem 46.7 22 0.00048 30.1 3.1 47 20-66 287-333 (372)
110 PF05393 Hum_adeno_E3A: Human 44.5 22 0.00047 24.9 2.3 31 47-77 35-65 (94)
111 TIGR00803 nst UDP-galactose tr 44.1 21 0.00046 26.8 2.5 45 26-70 9-53 (222)
112 PF12273 RCR: Chitin synthesis 44.0 19 0.00041 25.6 2.1 12 78-89 30-41 (130)
113 COG1742 Uncharacterized conser 42.2 55 0.0012 23.5 4.2 64 7-70 40-107 (109)
114 KOG3762 Predicted transporter 42.1 1.6E+02 0.0035 27.0 7.9 19 100-118 578-596 (618)
115 PF01988 VIT1: VIT family; In 41.7 29 0.00062 26.6 2.9 34 30-63 13-46 (213)
116 PF01102 Glycophorin_A: Glycop 41.4 22 0.00049 25.8 2.1 18 54-71 76-93 (122)
117 PRK12437 prolipoprotein diacyl 40.0 25 0.00054 28.1 2.4 46 23-68 206-256 (269)
118 PF14963 CAML: Calcium signal- 39.5 39 0.00086 27.7 3.4 55 4-63 167-224 (263)
119 PF01350 Flavi_NS4A: Flaviviru 38.8 1.6E+02 0.0036 22.0 6.4 65 6-74 59-123 (144)
120 COG1971 Predicted membrane pro 38.8 65 0.0014 25.2 4.5 46 23-68 42-88 (190)
121 TIGR00544 lgt prolipoprotein d 38.1 90 0.0019 25.1 5.3 46 24-69 214-268 (278)
122 PF11023 DUF2614: Protein of u 37.8 64 0.0014 23.4 4.0 61 47-109 39-109 (114)
123 COG4975 GlcU Putative glucose 37.8 9.8 0.00021 31.4 -0.2 58 7-64 221-282 (288)
124 TIGR01167 LPXTG_anchor LPXTG-m 37.7 50 0.0011 17.7 2.8 14 48-61 11-24 (34)
125 PF02038 ATP1G1_PLM_MAT8: ATP1 37.4 35 0.00077 21.3 2.3 22 51-72 19-40 (50)
126 PF15471 TMEM171: Transmembran 37.3 47 0.001 27.8 3.6 24 49-72 161-184 (319)
127 PRK00052 prolipoprotein diacyl 36.8 29 0.00063 27.7 2.3 47 24-70 209-260 (269)
128 TIGR03810 arg_ornith_anti argi 36.5 1.2E+02 0.0027 25.4 6.1 41 29-70 391-432 (468)
129 PRK10489 enterobactin exporter 36.3 96 0.0021 24.8 5.3 39 32-70 362-401 (417)
130 PF08693 SKG6: Transmembrane a 35.6 26 0.00055 20.9 1.4 17 54-70 22-38 (40)
131 PF15065 NCU-G1: Lysosomal tra 35.6 6.6 0.00014 33.2 -1.6 45 16-72 305-349 (350)
132 TIGR00966 3a0501s07 protein-ex 34.6 92 0.002 24.4 4.8 43 21-64 123-165 (246)
133 PRK02935 hypothetical protein; 34.3 90 0.0019 22.5 4.2 46 28-74 19-67 (110)
134 PRK11562 nitrite transporter N 34.1 40 0.00086 27.4 2.7 29 47-75 229-257 (268)
135 PF11755 DUF3311: Protein of u 33.8 1.3E+02 0.0028 19.2 5.0 41 28-68 3-52 (66)
136 KOG0913 Thiol-disulfide isomer 33.1 18 0.0004 29.4 0.6 32 82-113 217-248 (248)
137 PF05977 MFS_3: Transmembrane 33.1 1.7E+02 0.0036 25.6 6.6 55 14-68 339-393 (524)
138 PRK10644 arginine:agmatin anti 32.8 1.6E+02 0.0035 24.4 6.3 17 27-43 386-402 (445)
139 cd02432 Nodulin-21_like_1 Nodu 32.2 41 0.0009 26.3 2.5 36 29-64 18-53 (218)
140 PRK09577 multidrug efflux prot 32.2 1.2E+02 0.0026 28.8 5.8 32 32-64 902-933 (1032)
141 PRK09579 multidrug efflux prot 31.6 1.2E+02 0.0027 28.7 5.8 31 33-64 882-912 (1017)
142 cd02434 Nodulin-21_like_3 Nodu 31.4 35 0.00076 26.7 2.0 35 29-63 13-47 (225)
143 PRK10755 sensor protein BasS/P 31.0 83 0.0018 24.7 4.0 14 33-46 18-31 (356)
144 PRK05585 yajC preprotein trans 30.8 41 0.00089 23.6 2.0 31 57-87 26-57 (106)
145 PF12036 DUF3522: Protein of u 30.3 1.5E+02 0.0033 22.5 5.2 65 3-70 73-137 (186)
146 PF05510 Sarcoglycan_2: Sarcog 29.6 90 0.002 26.9 4.2 28 85-112 321-348 (386)
147 PRK13022 secF preprotein trans 28.7 1.3E+02 0.0028 24.4 4.8 45 19-64 150-194 (289)
148 TIGR00739 yajC preprotein tran 28.6 44 0.00096 22.4 1.8 32 58-89 12-44 (84)
149 COG1380 Putative effector of m 28.3 72 0.0016 23.3 3.0 31 34-64 11-48 (128)
150 PRK00269 zipA cell division pr 28.2 45 0.00097 27.8 2.1 26 47-72 5-30 (293)
151 PF06781 UPF0233: Uncharacteri 27.9 61 0.0013 22.3 2.4 21 48-68 66-86 (87)
152 PRK10720 uracil transporter; P 27.9 1.2E+02 0.0026 25.8 4.8 34 2-35 46-80 (428)
153 PRK00281 undecaprenyl pyrophos 27.5 1.4E+02 0.0031 24.1 4.9 43 24-66 86-131 (268)
154 PRK02251 putative septation in 27.4 65 0.0014 22.2 2.5 21 48-68 66-86 (87)
155 TIGR00905 2A0302 transporter, 27.3 1.7E+02 0.0036 24.7 5.4 42 27-68 394-435 (473)
156 PRK06531 yajC preprotein trans 26.9 38 0.00082 24.3 1.3 23 57-79 10-33 (113)
157 PF02699 YajC: Preprotein tran 26.7 57 0.0012 21.6 2.1 33 57-89 10-43 (82)
158 PF15099 PIRT: Phosphoinositid 26.5 31 0.00067 25.5 0.8 22 44-65 74-95 (129)
159 PF05297 Herpes_LMP1: Herpesvi 25.9 21 0.00046 30.2 -0.1 24 6-29 119-142 (381)
160 PRK00159 putative septation in 25.7 71 0.0015 22.1 2.4 21 48-68 66-86 (87)
161 PLN02822 serine palmitoyltrans 25.6 15 0.00033 31.5 -1.1 59 40-98 27-87 (481)
162 TIGR01512 ATPase-IB2_Cd heavy 25.6 86 0.0019 27.3 3.5 77 32-116 4-80 (536)
163 PF15102 TMEM154: TMEM154 prot 25.5 51 0.0011 24.8 1.8 20 54-73 68-87 (146)
164 PF03899 ATP_synt_I: ATP synth 25.3 1.6E+02 0.0035 18.8 4.1 40 30-69 8-47 (100)
165 COG0475 KefB Kef-type K+ trans 25.0 1.6E+02 0.0034 24.8 4.9 60 8-70 203-262 (397)
166 PRK05886 yajC preprotein trans 25.0 58 0.0012 23.2 1.9 22 57-78 12-34 (109)
167 PF08507 COPI_assoc: COPI asso 24.8 1.6E+02 0.0035 20.9 4.3 30 36-66 75-104 (136)
168 PRK13021 secF preprotein trans 24.7 1.7E+02 0.0036 24.1 4.8 39 25-64 155-193 (297)
169 COG1296 AzlC Predicted branche 24.4 1.8E+02 0.0038 23.3 4.8 48 24-72 139-190 (238)
170 PF02673 BacA: Bacitracin resi 24.2 2.1E+02 0.0046 22.9 5.3 47 21-67 78-128 (259)
171 PF01618 MotA_ExbB: MotA/TolQ/ 24.2 1.8E+02 0.0038 20.6 4.4 21 1-21 69-89 (139)
172 PRK05978 hypothetical protein; 24.1 2.1E+02 0.0045 21.4 4.9 33 20-52 70-102 (148)
173 PF04156 IncA: IncA protein; 23.5 1.6E+02 0.0034 21.7 4.2 23 47-69 35-57 (191)
174 PF04191 PEMT: Phospholipid me 23.5 85 0.0019 20.6 2.5 22 49-70 1-22 (106)
175 PRK11357 frlA putative fructos 23.2 1.7E+02 0.0036 24.3 4.7 43 28-71 390-437 (445)
176 PF00873 ACR_tran: AcrB/AcrD/A 23.0 1.8E+02 0.004 27.2 5.3 42 22-64 887-930 (1021)
177 PF07010 Endomucin: Endomucin; 22.9 3.1E+02 0.0066 22.5 5.9 20 56-75 204-223 (259)
178 TIGR00892 2A0113 monocarboxyla 22.9 1E+02 0.0022 25.6 3.3 12 79-90 437-448 (455)
179 PF07332 DUF1469: Protein of u 22.9 1.1E+02 0.0024 20.8 3.0 20 53-72 78-97 (121)
180 COG3366 Uncharacterized protei 22.8 91 0.002 26.1 3.0 45 20-64 98-142 (311)
181 PF14897 EpsG: EpsG family 22.8 3.3E+02 0.0072 20.8 6.0 59 4-66 72-130 (330)
182 PRK14584 hmsS hemin storage sy 22.6 3.1E+02 0.0067 20.7 5.6 52 55-110 68-122 (153)
183 PRK10862 SoxR reducing system 22.6 1.4E+02 0.003 22.1 3.7 19 25-43 81-100 (154)
184 PF12046 DUF3529: Protein of u 22.3 2.4E+02 0.0051 21.8 5.0 19 91-109 148-166 (173)
185 PF08006 DUF1700: Protein of u 21.7 2.8E+02 0.0061 20.3 5.2 10 54-63 143-152 (181)
186 TIGR01156 cytb6/f_IV cytochrom 21.7 3.6E+02 0.0079 20.4 6.0 36 9-44 80-115 (159)
187 TIGR03068 srtB_sig_NPQTN sorta 21.6 73 0.0016 18.3 1.5 11 25-35 9-19 (33)
188 COG3476 Tryptophan-rich sensor 21.3 2.9E+02 0.0062 21.1 5.2 58 7-65 63-122 (161)
189 PF05661 DUF808: Protein of un 21.3 95 0.0021 25.9 2.8 17 52-68 86-102 (295)
190 TIGR01525 ATPase-IB_hvy heavy 21.1 1.2E+02 0.0025 26.5 3.4 13 104-116 69-81 (556)
191 KOG1358 Serine palmitoyltransf 21.1 42 0.00092 29.5 0.7 53 45-97 16-70 (467)
192 PRK01821 hypothetical protein; 20.8 1.1E+02 0.0025 22.3 2.9 31 34-64 15-52 (133)
193 TIGR01129 secD protein-export 20.4 2.1E+02 0.0045 24.3 4.8 42 21-63 272-313 (397)
194 PRK12933 secD preprotein trans 20.2 2E+02 0.0044 26.2 4.8 31 33-64 476-507 (604)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.70 E-value=2.3e-17 Score=136.13 Aligned_cols=71 Identities=38% Similarity=0.832 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~ 74 (118)
++.++|.+|+|+++++||+++|+|.+++|++++++|+++|||++++.+++|+++|+.|+++++|+++||.+
T Consensus 265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~ 335 (358)
T PLN00411 265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEK 335 (358)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 36689999999999999999999999999999999999999999999999999999999999997766644
No 2
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.49 E-value=4.1e-14 Score=112.05 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=68.9
Q ss_pred CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109 1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~ 74 (118)
|+++|+++|.+|++++++.+|+++|.+.+++|++++++|++++||++++.+++|+++|++|++...+..+|+.|
T Consensus 215 gv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~ 288 (293)
T PRK10532 215 AILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK 288 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999998877655443
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.44 E-value=1.4e-13 Score=109.06 Aligned_cols=70 Identities=27% Similarity=0.276 Sum_probs=67.2
Q ss_pred CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109 1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
|+++|+++|.+|++++++.+|++++.+.+++|++++++|++++||++++.+++|+++|+.|+++..|+++
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 4689999999999999999999999999999999999999999999999999999999999999988765
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.43 E-value=2e-13 Score=108.26 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=64.4
Q ss_pred ehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109 3 VGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 3 ~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
++|+++|.+|++++++.||++++.+.+++|++++++|++++||++++.+++|+++|+.|+++..+..+
T Consensus 223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 47899999999999999999999999999999999999999999999999999999999999876554
No 5
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.35 E-value=1.3e-12 Score=103.33 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=66.7
Q ss_pred CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccch
Q 037109 1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGK 71 (118)
Q Consensus 1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k 71 (118)
|+++|+++|.+|++++++.++++++.+.+++|++++++|++++||++++.+++|+++|+.|+++..+.++|
T Consensus 219 ~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 219 AVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999998876543
No 6
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.20 E-value=2.9e-11 Score=95.88 Aligned_cols=64 Identities=9% Similarity=-0.019 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHh
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLW 67 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~ 67 (118)
+|.++|.+|++++++.||+++|.+.+++|++++++|++++||++++.+++|+++|+.|+.+...
T Consensus 222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999888776553
No 7
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.19 E-value=5.5e-11 Score=80.13 Aligned_cols=66 Identities=24% Similarity=0.388 Sum_probs=62.7
Q ss_pred CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109 1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL 66 (118)
Q Consensus 1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 66 (118)
|++++++++.+|++++++.+++.++.+.+++|++++++++++++|++++.+++|.++++.|++++.
T Consensus 60 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 60 GLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999864
No 8
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.18 E-value=3.1e-11 Score=94.83 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=60.8
Q ss_pred eehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHH
Q 037109 2 IVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYA 64 (118)
Q Consensus 2 I~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l 64 (118)
.++|+++|.+|++++++.|+++++.+.+++|++++++|++++||+++..+++|+++|+.|+++
T Consensus 218 ~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 218 GLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 467899999999999999999999999999999999999999999999999999999999986
No 9
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.14 E-value=1e-10 Score=84.92 Aligned_cols=71 Identities=23% Similarity=0.220 Sum_probs=65.2
Q ss_pred CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHH--HhCccchhhhhhhHHHHHHHHHHHHhccch
Q 037109 1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASL--ILDEKLHLGSVLGATLIVCGLYAVLWGKGK 71 (118)
Q Consensus 1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l--~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k 71 (118)
|+++++++|.+|++++++.+++.+.-+..+.+++..++++. ++||++++.+++|.++|++|++++.++++|
T Consensus 54 gl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 54 GLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 46789999999999999999999999999999989888885 899999999999999999999998876554
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.13 E-value=2.8e-11 Score=95.60 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=59.7
Q ss_pred hHHHHHHHH----HHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchh
Q 037109 5 SGLMVTMTS----WCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKE 72 (118)
Q Consensus 5 S~iay~l~~----~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~ 72 (118)
+..++.+|+ +++++.||++++++.++.|++++++|++++||++++.+++|+++++.|+++.++.|.|+
T Consensus 227 ~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~ 298 (302)
T TIGR00817 227 AMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQK 298 (302)
T ss_pred HHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccC
Confidence 334555444 79999999999999999999999999999999999999999999999999998765443
No 11
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.07 E-value=1.5e-10 Score=88.32 Aligned_cols=62 Identities=23% Similarity=0.391 Sum_probs=59.5
Q ss_pred CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHH
Q 037109 1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGL 62 (118)
Q Consensus 1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv 62 (118)
|+++++++|.+|++++++.++++++.+.+++|+++++++++++||+++..+++|+++++.|+
T Consensus 198 ~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 198 GLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 35689999999999999999999999999999999999999999999999999999999986
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.93 E-value=2.4e-09 Score=81.06 Aligned_cols=68 Identities=26% Similarity=0.435 Sum_probs=64.6
Q ss_pred CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109 1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 68 (118)
|+++++++|.+|++++++.+++.++.+.++.|++++++++++++|+++..+++|+++++.|+.+....
T Consensus 221 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 221 GVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 45678899999999999999999999999999999999999999999999999999999999998876
No 13
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.89 E-value=2.7e-09 Score=87.34 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=63.1
Q ss_pred eehhHHHHHHHHH----HHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109 2 IVGSGLMVTMTSW----CVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 2 I~~S~iay~l~~~----ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 68 (118)
+++++++|.+||+ ++++++|...+++.++.|++++++|++++||++++.+++|+++++.|+++.++.
T Consensus 279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 4578999999995 999999999999999999999999999999999999999999999999997754
No 14
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.77 E-value=2.1e-08 Score=69.62 Aligned_cols=67 Identities=21% Similarity=0.320 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccch
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGK 71 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k 71 (118)
+...++.+|.++++..++ .++....+.|++++++|+++++|+++...++|.+++++|+.+..+....
T Consensus 44 ~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 44 GFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 345789999999999995 8889999999999999999999999999999999999999999887543
No 15
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.67 E-value=6.1e-08 Score=68.39 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=59.7
Q ss_pred ehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109 3 VGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL 66 (118)
Q Consensus 3 ~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 66 (118)
++-++++++|.+++++.+.+.+.....+.+++++++|++++||++++.+++|.++|++|+.+.-
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4557789999999999999999999999999999999999999999999999999999998754
No 16
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.65 E-value=2.5e-08 Score=73.75 Aligned_cols=64 Identities=27% Similarity=0.267 Sum_probs=60.5
Q ss_pred ehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109 3 VGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL 66 (118)
Q Consensus 3 ~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 66 (118)
++++++..+|+++++.-.++++.-.--+.|+++++++++||||+++..+++|.++|.+|..++.
T Consensus 75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 4688999999999999999999999999999999999999999999999999999999987654
No 17
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.46 E-value=3.5e-07 Score=72.59 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=60.5
Q ss_pred ehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHh
Q 037109 3 VGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLW 67 (118)
Q Consensus 3 ~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~ 67 (118)
++.++.+.+|++++++.+++.+++..+..|++++++++++++|+++..+++|.++.+.|+.+..+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999998754
No 18
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.46 E-value=3.5e-07 Score=69.78 Aligned_cols=66 Identities=17% Similarity=0.084 Sum_probs=60.9
Q ss_pred eehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHh
Q 037109 2 IVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLW 67 (118)
Q Consensus 2 I~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~ 67 (118)
.++..+.+.++++++++.+++.+++...+.|++++++++++++|++++.+++|.++.+.|+.+...
T Consensus 54 ~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 54 ALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 345677888999999999999999999999999999999999999999999999999999988754
No 19
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.46 E-value=2.2e-07 Score=74.24 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=61.5
Q ss_pred eehhHHHHHHHHHHHh-hcCccchhhhhhhHHHHHHHHHHHHhCccchhhhh----hhHHHHHHHHHHHHhc
Q 037109 2 IVGSGLMVTMTSWCVH-IRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSV----LGATLIVCGLYAVLWG 68 (118)
Q Consensus 2 I~~S~iay~l~~~ai~-~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~i----iG~~lIl~Gv~l~~~~ 68 (118)
++ ++++|.+|.++.+ +.+++.++....++|+++++++++++||..+..++ +|+++|+.|+.+....
T Consensus 219 i~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 219 LM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 45 7899999999999 99999999999999999999999999999999999 9999999999886543
No 20
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.44 E-value=2.1e-07 Score=75.59 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=67.5
Q ss_pred CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109 1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~ 74 (118)
|+++|++-|.+=..+++++++..-++.+.++|.++++.|+++|||.+++.|++|.+.|+.+..=+.+..+|...
T Consensus 216 avlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~~ 289 (292)
T COG5006 216 AVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPAV 289 (292)
T ss_pred HHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999998877776555433
No 21
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.39 E-value=7.7e-07 Score=69.91 Aligned_cols=65 Identities=23% Similarity=0.147 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 68 (118)
+..+.+.++++++++.+++.++.+.+..|++++++++++++|+++..+++|.++++.|+++..+.
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 35677888899999999999999999999999999999999999999999999999999987654
No 22
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.32 E-value=1.6e-06 Score=66.95 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHh
Q 037109 5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLW 67 (118)
Q Consensus 5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~ 67 (118)
.++.+.++++++++.++..+++..+..|++++++++++++|+++..+++|.++.++|+.+...
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999987643
No 23
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.18 E-value=7.3e-06 Score=59.18 Aligned_cols=68 Identities=21% Similarity=0.284 Sum_probs=58.4
Q ss_pred ehhHHHHHHHHHHHhhcCccchh-hhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109 3 VGSGLMVTMTSWCVHIRGPLFVS-VFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 3 ~~S~iay~l~~~ai~~~Gp~~as-~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
++-+++|+++.+++++++-+.+= ++.-+--+.++++|++++||++++.+++|.++|++|+...+...+
T Consensus 38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 34567899999999998887763 445688899999999999999999999999999999999876654
No 24
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.05 E-value=9.7e-06 Score=64.09 Aligned_cols=62 Identities=11% Similarity=0.062 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109 5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL 66 (118)
Q Consensus 5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 66 (118)
.++.+.++|+++++.+++.+++...+.|++++++++++++|+++..+++|.++.++|+.+..
T Consensus 75 ~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 75 HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 35667899999999999999999999999999999999999999999999999999998753
No 25
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.04 E-value=9.8e-06 Score=61.32 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=63.4
Q ss_pred eehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHH-HHhCccchhhhhhhHHHHHHHHHHHHhccchh
Q 037109 2 IVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAAS-LILDEKLHLGSVLGATLIVCGLYAVLWGKGKE 72 (118)
Q Consensus 2 I~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~-l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~ 72 (118)
.+.....+.+|+.++++.++..++...+..|++.+++++ ++++|+++...++|.++.+.|++++.+.....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 77 LLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 345677889999999999999999999999999999997 77799999999999999999999988765543
No 26
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.02 E-value=1.1e-05 Score=66.97 Aligned_cols=62 Identities=16% Similarity=0.295 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHH------hCccchhhhhhhHHHHHHHHHHHHhc
Q 037109 7 LMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLI------LDEKLHLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 7 iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~------LgE~lt~~~iiG~~lIl~Gv~l~~~~ 68 (118)
+.+.+++++++..+|+.+++..+..|+++++++++| ++|+++..+++|.++-++|+.+....
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 345589999999999999999999999999999999 69999999999999999999987653
No 27
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.02 E-value=2.5e-05 Score=55.45 Aligned_cols=67 Identities=10% Similarity=0.180 Sum_probs=57.8
Q ss_pred ehhHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhcc
Q 037109 3 VGSGLMVTMTSWCVHIRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGK 69 (118)
Q Consensus 3 ~~S~iay~l~~~ai~~~Gp~~a-s~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 69 (118)
++-+++|+++..++++++-+.+ +++.-+.-+.++++|+++++|++++.+++|.++|++|+.+.+...
T Consensus 38 ~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3456789999999999887765 455667889999999999999999999999999999999987654
No 28
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.99 E-value=1.4e-05 Score=63.38 Aligned_cols=61 Identities=11% Similarity=0.167 Sum_probs=53.4
Q ss_pred HHHHHHHHHhh-cCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109 8 MVTMTSWCVHI-RGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 8 ay~l~~~ai~~-~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 68 (118)
.+.+++.++++ .++..+++..++.|+++.++++++++|+++..+++|.++.++|+++..++
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 34456677776 57789999999999999999999999999999999999999999987754
No 29
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.93 E-value=1.9e-05 Score=62.46 Aligned_cols=62 Identities=11% Similarity=0.022 Sum_probs=55.9
Q ss_pred HHHHHHHHHHH-hhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109 6 GLMVTMTSWCV-HIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 6 ~iay~l~~~ai-~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 68 (118)
++.+.+++++. +..++..+++..++.|+++++++++ ++|+++..+++|.++.++|+++..+.
T Consensus 80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 45677888998 8999999999999999999999986 69999999999999999999988754
No 30
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.89 E-value=2.6e-05 Score=63.94 Aligned_cols=60 Identities=20% Similarity=0.118 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHh
Q 037109 8 MVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLW 67 (118)
Q Consensus 8 ay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~ 67 (118)
.+...+++++..+++.+++...+.|++++++++++++|+++...++|.+++++|+++...
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 466677999999999999999999999999999999999999999999999999998653
No 31
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.75 E-value=2.5e-05 Score=60.26 Aligned_cols=39 Identities=5% Similarity=0.009 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHH
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLI 42 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~ 42 (118)
.|+++|.+|++++++.+|++++.+.|++|++++++|++.
T Consensus 217 ~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 217 ITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 488999999999999999999999999999999999875
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.72 E-value=7.2e-05 Score=52.92 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=53.0
Q ss_pred HHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109 10 TMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL 66 (118)
Q Consensus 10 ~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 66 (118)
...++++++.+|...++...+-.++..++|++++||++++.+++|.++.+.|.++.+
T Consensus 96 ~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 96 LSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 345589999999999999999999999999999999999999999999999998754
No 33
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.00015 Score=51.61 Aligned_cols=67 Identities=27% Similarity=0.424 Sum_probs=58.1
Q ss_pred ehhHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhcc
Q 037109 3 VGSGLMVTMTSWCVHIRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGK 69 (118)
Q Consensus 3 ~~S~iay~l~~~ai~~~Gp~~a-s~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 69 (118)
++-+++|++..+++++++-..+ +++.-+-.+.+++.|+++++|++++..++|.+++++|+...++..
T Consensus 38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 3456889999999999876554 677888889999999999999999999999999999999887654
No 34
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.69 E-value=0.00013 Score=58.20 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchh
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKE 72 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~ 72 (118)
+..++-...++.+++.||...++...+--+++.++++++.|+++++.+++|.++++.|+.+..+.++|+
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 455666677789999999999999999999999999999999999999999999999999988877654
No 35
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.69 E-value=7.5e-05 Score=61.99 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~ 74 (118)
+..+-|.+....++..+|+...+-+.....+++++++++.|+.+++..++|.++|+.|+.+....+.++.+
T Consensus 242 ~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 242 CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 44566778889999999999999999999999999999999999999999999999999998877655444
No 36
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.69 E-value=0.00016 Score=51.46 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109 4 GSGLMVTMTSWCVHIRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL 66 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~a-s~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 66 (118)
+-+++|++...++++++...+ +++.-+--+.+++.|++++||++++.+++|.++|+.|+...+
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 446789999999999887655 667778889999999999999999999999999999998764
No 37
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.66 E-value=0.00011 Score=58.29 Aligned_cols=59 Identities=20% Similarity=0.121 Sum_probs=50.4
Q ss_pred HHHHHHHh----hcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109 10 TMTSWCVH----IRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 10 ~l~~~ai~----~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 68 (118)
.+++++++ ..++..+++..++.|++++++++++++|+++..+++|.++-++|+++....
T Consensus 76 ~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 76 ICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 33445554 457788899999999999999999999999999999999999999887654
No 38
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.65 E-value=0.00023 Score=50.26 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109 4 GSGLMVTMTSWCVHIRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~a-s~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 68 (118)
+-+++|++...++++++...+ +++.-+--+.+++.|++++||++++.+++|.++|+.|+...+..
T Consensus 38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 456788999999998887655 67777888999999999999999999999999999999987543
No 39
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.51 E-value=5.9e-05 Score=62.28 Aligned_cols=64 Identities=17% Similarity=0.059 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109 7 LMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 7 iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
.+..+.+++.++..-+-+.+..+..|+++++++|++|+|+.+....+|..+.+.|+.+..+.+.
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF 172 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF 172 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence 3556778899999999999999999999999999999999999999999999999999777664
No 40
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.45 E-value=0.00034 Score=47.64 Aligned_cols=55 Identities=29% Similarity=0.387 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHH
Q 037109 4 GSGLMVTMTSWCVHIRGPLFV-SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLI 58 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~a-s~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lI 58 (118)
+=+++++++.+++++++.+.+ +++.-+..+..++.|++++||++++.+++|..+|
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 446889999999999998888 6777799999999999999999999999998876
No 41
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.41 E-value=4e-05 Score=58.29 Aligned_cols=61 Identities=20% Similarity=0.110 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHH
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYA 64 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l 64 (118)
..++...+-.|.+++.|+...++...+.++++++++++++|++++..+++|+.+++.|+++
T Consensus 161 ~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 161 LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 3455566678999999999999999999999999999999999999999999999999764
No 42
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.14 E-value=0.0013 Score=54.05 Aligned_cols=70 Identities=9% Similarity=-0.031 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhh
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEM 73 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~ 73 (118)
.|++...+|..+-+++.=+..+...|++|..-.++|++++||+++..+++..++|-.|+.+..+..-++.
T Consensus 220 vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~ 289 (293)
T COG2962 220 VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTA 289 (293)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999999999887764433
No 43
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.14 E-value=0.00067 Score=54.21 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhcCccchhhhhh-hHHHHHHHHHHHHhCccchhhh----hhhHHHHHHHHHHHHhc
Q 037109 7 LMVTMTSWCVHIRGPLFVSVFTP-LSVVAVAVAASLILDEKLHLGS----VLGATLIVCGLYAVLWG 68 (118)
Q Consensus 7 iay~l~~~ai~~~Gp~~as~~~~-L~PV~a~ilg~l~LgE~lt~~~----iiG~~lIl~Gv~l~~~~ 68 (118)
++...|..++++.|.+.+-.+.+ +.+++.++++.+++||..+..+ ++|.++++.|++++...
T Consensus 71 ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 71 LGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred hhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 34488999999999999988888 9999999999999999999999 99999999999887444
No 44
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.13 E-value=0.0012 Score=52.10 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=58.3
Q ss_pred HHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchh
Q 037109 10 TMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKE 72 (118)
Q Consensus 10 ~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~ 72 (118)
.+++.++++++|+.--+...+..++++++++++|+.+++..|+++.+++..|+.+++......
T Consensus 32 ~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 32 NLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 556689999999999999999999999999999999999999999999999999998876554
No 45
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.88 E-value=0.0023 Score=51.02 Aligned_cols=71 Identities=15% Similarity=0.101 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~ 74 (118)
...++-.+.++++++++-..-.++-...|++.+++++++++++.+..++++.+++.+|+.++.....+..+
T Consensus 73 ~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 73 LFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 34567788999999999999999999999999999999999999999999999999999998877654444
No 46
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.86 E-value=0.0018 Score=53.29 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhcc
Q 037109 7 LMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGK 69 (118)
Q Consensus 7 iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 69 (118)
+-..+|.|++.+--..-+|+=+++.|++.+++|.+||+|+++..|++..++-.+|+..-.|..
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 456788999999999999999999999999999999999999999999999999998766654
No 47
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.0066 Score=49.76 Aligned_cols=64 Identities=23% Similarity=0.210 Sum_probs=59.6
Q ss_pred ehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109 3 VGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL 66 (118)
Q Consensus 3 ~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 66 (118)
++|+++-++-+..+..-||-..|+...---.|+++.++++++.+++..|++|.++++.++.+=.
T Consensus 249 i~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 249 IASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 4688888889999999999999999999999999999999999999999999999999988633
No 48
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.62 E-value=0.0038 Score=51.93 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109 6 GLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 6 ~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
+.|-++++.+.+...-+-+.+.....-++++++++++|+++.++.|++|.++.++|+.++.+...
T Consensus 90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 34667888999999999999999999999999999999999999999999999999998877653
No 49
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.07 E-value=0.0089 Score=42.93 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhcCccchhhh-hhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHH
Q 037109 7 LMVTMTSWCVHIRGPLFVSVF-TPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAV 65 (118)
Q Consensus 7 iay~l~~~ai~~~Gp~~as~~-~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~ 65 (118)
.+..+|++.+++.+-+.+.-. +.+.=+|+++.|+++.+|..+...++|+++|+.|+.++
T Consensus 53 ~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 53 SGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 456778888998888777666 57888999999988888888999999999999998764
No 50
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=95.72 E-value=0.0078 Score=49.03 Aligned_cols=63 Identities=25% Similarity=0.272 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHh
Q 037109 5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLW 67 (118)
Q Consensus 5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~ 67 (118)
-+++..+...+....+++.++-+..+.-++.++++..+|+|+++...++|.++++.|..+.-.
T Consensus 60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 355566777778878888888888888899999999999999999999999999999987543
No 51
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=95.68 E-value=0.0015 Score=54.09 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=57.9
Q ss_pred HHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109 12 TSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 12 ~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~ 74 (118)
.++++.+.+|..-++...+--++.++.|++++++++++.+..|.++-+.|+++..+.+.++++
T Consensus 252 ~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 252 AFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred HHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 458899999999999999999999999999999999999999999999999999988776655
No 52
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.25 E-value=0.057 Score=45.47 Aligned_cols=60 Identities=18% Similarity=0.131 Sum_probs=54.7
Q ss_pred HHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109 11 MTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 11 l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
+++.+..+++|+.-.+.+.+--+.++++++++|+++++..|+...++.++|+.++++...
T Consensus 108 l~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 108 LQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSL 167 (345)
T ss_pred HHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Confidence 455788899999999999999999999999999999999999999999999999995543
No 53
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.20 E-value=0.019 Score=47.73 Aligned_cols=62 Identities=18% Similarity=0.072 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109 5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL 66 (118)
Q Consensus 5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 66 (118)
+.++-.+-+.++++=-|..+|+..+..-++|.++-++|+|+..+++++.|+++|+.....+-
T Consensus 263 gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 263 GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA 324 (346)
T ss_pred hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence 34556677889999899999999999999999999999999999999999999998876544
No 54
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.18 E-value=0.065 Score=43.60 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhcCccchhhhh-hhHHHHHHHHHHHHhCccchhhhhh----hHHHHHHHHHHHHhccchhhh
Q 037109 7 LMVTMTSWCVHIRGPLFVSVFT-PLSVVAVAVAASLILDEKLHLGSVL----GATLIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 7 iay~l~~~ai~~~Gp~~as~~~-~L~PV~a~ilg~l~LgE~lt~~~ii----G~~lIl~Gv~l~~~~~~k~~~ 74 (118)
++-..|+++.++.|-+++.=.. -++-|.++++|++++||.-+..+.+ +.++|+.|+++..+..+++.+
T Consensus 57 iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~ 129 (269)
T PF06800_consen 57 IGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK 129 (269)
T ss_pred HHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence 4556788999999998876444 5667778999999999987766544 778999999998887665554
No 55
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.88 E-value=0.12 Score=37.13 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=29.6
Q ss_pred HHHHHHHhCccchhhhhhhHHHHHHHHHHHHh
Q 037109 36 AVAASLILDEKLHLGSVLGATLIVCGLYAVLW 67 (118)
Q Consensus 36 ~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~ 67 (118)
+.++++.|+|++.|.++.|++++++|+++..+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 67899999999999999999999999998754
No 56
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=93.88 E-value=0.082 Score=44.02 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=45.6
Q ss_pred cCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH--hccch
Q 037109 19 RGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL--WGKGK 71 (118)
Q Consensus 19 ~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~--~~~~k 71 (118)
..+-.+++...+--.+..+++++.+..++++++++|+++++.|-++.. |.+.|
T Consensus 266 ~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~ 320 (330)
T KOG1583|consen 266 TSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHPK 320 (330)
T ss_pred ecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 455667788888999999999999999999999999999999988754 66555
No 57
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=93.73 E-value=0.057 Score=38.68 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=27.7
Q ss_pred HHHHHHHhCccchhhhhhhHHHHHHHHHHH
Q 037109 36 AVAASLILDEKLHLGSVLGATLIVCGLYAV 65 (118)
Q Consensus 36 ~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~ 65 (118)
+.+++++++|++++.++.|.+++++++|++
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 678899999999999999999999998864
No 58
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.40 E-value=0.061 Score=44.92 Aligned_cols=66 Identities=11% Similarity=0.180 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhcc
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGK 69 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 69 (118)
|.+++-.+-++-+++-||..-++.+..--+++++++.+..|.++++-|++|..+++.|+++-..-+
T Consensus 250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k 315 (327)
T KOG1581|consen 250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLK 315 (327)
T ss_pred hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHH
Confidence 455566666788999999999999999999999999999999999999999999999999855433
No 59
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.15 E-value=0.13 Score=44.13 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=64.6
Q ss_pred CeehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhh
Q 037109 1 GIVGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEM 73 (118)
Q Consensus 1 GI~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~ 73 (118)
+.++|+++=++|.|++-...|..+.+-+.+.-=.|++...++=|-.+++..++|.+.|++|.+.++.......
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~ 396 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSK 396 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccc
Confidence 3567899999999999999999999888888778899999999999999999999999999999887654433
No 60
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=92.77 E-value=0.2 Score=39.69 Aligned_cols=57 Identities=19% Similarity=0.068 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHh
Q 037109 5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLW 67 (118)
Q Consensus 5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~ 67 (118)
.++.+.++++++++.++..+++..+..|+++++++. |+... ..+.++.++|+++..+
T Consensus 81 ~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~ 137 (293)
T PRK10532 81 LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLP 137 (293)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeee
Confidence 355677889999999999999999999999998873 55443 4556777888887543
No 61
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=92.66 E-value=0.3 Score=41.17 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=52.8
Q ss_pred HHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchh
Q 037109 9 VTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKE 72 (118)
Q Consensus 9 y~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~ 72 (118)
-.+-.+.+++.+-..=+....+..+++++.++.+++-.++....+|..+++..+++....+.++
T Consensus 264 GLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 264 GLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 3444566666676666777778999999999999999999999999999999999988666655
No 62
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=91.43 E-value=0.35 Score=39.37 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhh----hhhHHHHHHHHH
Q 037109 7 LMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGS----VLGATLIVCGLY 63 (118)
Q Consensus 7 iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~----iiG~~lIl~Gv~ 63 (118)
++-..+..+.++.|.+.+-.+.-+.++++++.|.++|||.-+..+ ++|.++|+.|..
T Consensus 207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 455667889999999999999999999999999999999988664 457777766654
No 63
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=91.25 E-value=0.13 Score=41.34 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109 8 MVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 8 ay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 68 (118)
+-++|..+++++.|+-++....-..-|.-+++|+.||+++....++.+++-+.|+.+..+.
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 4578999999999999999999999999999999999999999999999999998765443
No 64
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.15 E-value=0.81 Score=38.39 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=51.0
Q ss_pred HHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhcc
Q 037109 14 WCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGK 69 (118)
Q Consensus 14 ~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 69 (118)
-.++.-|+..+++....---++.+++++++..++|..+.-|+.+++.|+|+-..++
T Consensus 279 alI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 279 ALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 45667799999999999999999999999999999999999999999999977665
No 65
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=91.08 E-value=0.36 Score=36.39 Aligned_cols=28 Identities=4% Similarity=0.036 Sum_probs=21.9
Q ss_pred HHhhcCccchhhhhhhHHHHHHHHHHHH
Q 037109 15 CVHIRGPLFVSVFTPLSVVAVAVAASLI 42 (118)
Q Consensus 15 ai~~~Gp~~as~~~~L~PV~a~ilg~l~ 42 (118)
++...+..++|+..|+.|+++.+++.++
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677889999999999997776554
No 66
>PRK13499 rhamnose-proton symporter; Provisional
Probab=90.71 E-value=0.78 Score=38.54 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCccc-------hhhhhhhHHHHHHHHHHHHhccchh
Q 037109 7 LMVTMTSWCVHIRGPLFV-SVFTPLSVVAVAVAASLILDEKL-------HLGSVLGATLIVCGLYAVLWGKGKE 72 (118)
Q Consensus 7 iay~l~~~ai~~~Gp~~a-s~~~~L~PV~a~ilg~l~LgE~l-------t~~~iiG~~lIl~Gv~l~~~~~~k~ 72 (118)
++-..|..+++++|-+.+ ++..-+.-+++++++.+++||-- ....++|.+++++|+.+..+.-.++
T Consensus 85 iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k 158 (345)
T PRK13499 85 IGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLK 158 (345)
T ss_pred hhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 445667788888887765 45566788889999999999754 2446788899999999988854333
No 67
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=90.13 E-value=0.19 Score=43.25 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchh
Q 037109 7 LMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKE 72 (118)
Q Consensus 7 iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~ 72 (118)
+|-+.+|-+++....+-..+.....-+|+..+|.+|.+|++++.-+++.++-++|+.++..+..++
T Consensus 171 ~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 171 LANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 355667788888888888888899999999999999999999999999999999999988775544
No 68
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=87.57 E-value=0.92 Score=32.37 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=19.3
Q ss_pred CccchhhhhhhHHHHHHHHHHHHh
Q 037109 20 GPLFVSVFTPLSVVAVAVAASLIL 43 (118)
Q Consensus 20 Gp~~as~~~~L~PV~a~ilg~l~L 43 (118)
...+++++.|+.|+++.+++.++.
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999988886643
No 69
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=87.19 E-value=0.9 Score=38.24 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109 5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 68 (118)
-+.+-.+.+.++....++---+.=--.-+|+.+++.-||+.+++..|++|...+..|+..+-..
T Consensus 96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 3456667777777766665555555678999999999999999999999999999999876543
No 70
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.81 E-value=0.096 Score=43.96 Aligned_cols=56 Identities=34% Similarity=0.430 Sum_probs=44.1
Q ss_pred cCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109 19 RGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 19 ~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~ 74 (118)
-+++.++-.-.+.-++.++++..+|+|.+++...+|+++.++|-++.-...+++++
T Consensus 88 APasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~ 143 (335)
T KOG2922|consen 88 APASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE 143 (335)
T ss_pred chHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence 35556666667788999999999999999999999999999997765544444433
No 71
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=86.39 E-value=1.5 Score=29.78 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=40.2
Q ss_pred chhhhhhhHHHHHHHHHHHHhCccchh-----------hhhhhHHHHHHHHHHHH-hccchhhhhhhccC
Q 037109 23 FVSVFTPLSVVAVAVAASLILDEKLHL-----------GSVLGATLIVCGLYAVL-WGKGKEMKKQSQLV 80 (118)
Q Consensus 23 ~as~~~~L~PV~a~ilg~l~LgE~lt~-----------~~iiG~~lIl~Gv~l~~-~~~~k~~~~~~~~~ 80 (118)
..|+...+.|.+.+..|+-++.+.+.- ..+.|.++..+|++..- |--.|++|++++++
T Consensus 4 ~iAlliLvIPg~~a~yGiklMRD~~F~~~~~p~~~lwlqfl~G~~lf~~G~~Fi~GfI~~RDRKrnkV~p 73 (77)
T PF11118_consen 4 FIALLILVIPGILAAYGIKLMRDTVFGILFSPFPSLWLQFLAGLLLFAIGVGFIAGFILHRDRKRNKVQP 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhHhheeeccccccch
Confidence 457778889999988888776665432 34567788888888754 55566666666654
No 72
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=86.38 E-value=1.3 Score=33.01 Aligned_cols=25 Identities=4% Similarity=0.038 Sum_probs=19.0
Q ss_pred cCccchhhhhhhHHHHHHHHHHHHh
Q 037109 19 RGPLFVSVFTPLSVVAVAVAASLIL 43 (118)
Q Consensus 19 ~Gp~~as~~~~L~PV~a~ilg~l~L 43 (118)
....++++..|+.|+++.++|.++.
T Consensus 72 ~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 72 GSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688999999999988875543
No 73
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=85.73 E-value=0.56 Score=38.41 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHH
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATL 57 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~l 57 (118)
|+..--+.-.|+++..+.+.-|+.-.+.-.-.++.|.++++|+.+..++....+
T Consensus 233 ~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sill 286 (309)
T COG5070 233 CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILL 286 (309)
T ss_pred HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHH
Confidence 344445566799999999999999999999999999999999999998876544
No 74
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=84.90 E-value=2.8 Score=30.44 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHH-HHHHHHH----HhCccchhhhhhhHHHHHHHHHH
Q 037109 5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVA-VAVAASL----ILDEKLHLGSVLGATLIVCGLYA 64 (118)
Q Consensus 5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~-a~ilg~l----~LgE~lt~~~iiG~~lIl~Gv~l 64 (118)
.++-....++.+.++|++.+......--++ +.++..+ .-..++++..++|.+++++|+++
T Consensus 74 G~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 74 GVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 344556677889999999887776554444 3455543 35589999999999999999864
No 75
>PRK02237 hypothetical protein; Provisional
Probab=83.48 E-value=4.9 Score=28.87 Aligned_cols=65 Identities=9% Similarity=0.195 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhcC-c--cc-hhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109 6 GLMVTMTSWCVHIRG-P--LF-VSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 6 ~iay~l~~~ai~~~G-p--~~-as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
+++..+|.|.....+ + .+ -+.|--+--+.+.+.+++.=|.+++.+.++|+++.++|+.+..++++
T Consensus 40 ~~~L~lfg~llTl~p~~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 40 ALSLALFGWLLTLQPDAAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHHHHHHHHHHhcCCchhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 444555555555333 1 11 12333344456678899999999999999999999999998877654
No 76
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=83.32 E-value=0.9 Score=35.16 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccch-hhhhhhH-HHHHHHHHHHH
Q 037109 5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLH-LGSVLGA-TLIVCGLYAVL 66 (118)
Q Consensus 5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt-~~~iiG~-~lIl~Gv~l~~ 66 (118)
-+++|.+...-+....+...+.+..+.|..+..+|..+-+--.. +.+++|+ ++++.|+++..
T Consensus 17 vgi~~G~~~~~~~~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 17 VGIAYGLRKIKIPFLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 34555533322233455666777778888888888776643323 3556655 56677888765
No 77
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=82.91 E-value=1.8 Score=36.50 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=46.6
Q ss_pred HHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHH
Q 037109 14 WCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAV 65 (118)
Q Consensus 14 ~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~ 65 (118)
-.+.+.+....+++.-.-=+-+.++|.+++++.++...++|.++.+.|+.+-
T Consensus 262 lLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 262 LLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred heeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 4466778888888888889999999999999999999999999999998875
No 78
>PRK13499 rhamnose-proton symporter; Provisional
Probab=81.48 E-value=5.9 Score=33.33 Aligned_cols=61 Identities=18% Similarity=0.097 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhcCccchhh---hh-hhHHHHHHHHHHHHhCccch------hhhhhhHHHHHHHHHHHHhc
Q 037109 7 LMVTMTSWCVHIRGPLFVSV---FT-PLSVVAVAVAASLILDEKLH------LGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 7 iay~l~~~ai~~~Gp~~as~---~~-~L~PV~a~ilg~l~LgE~lt------~~~iiG~~lIl~Gv~l~~~~ 68 (118)
+++..|.++-++.|...+.. +. -+.-+++.+-|. +|||.-+ ...++|.++++.|..+...+
T Consensus 272 ~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 272 LQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 45566777778887665544 33 445588888888 5999999 67789999999999887654
No 79
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=80.10 E-value=7.8 Score=33.84 Aligned_cols=47 Identities=6% Similarity=0.104 Sum_probs=30.5
Q ss_pred hhhhhhhHHHHHHHHHHHHhCc-----cchhhhhhhHHHHHHHHHHHHhccc
Q 037109 24 VSVFTPLSVVAVAVAASLILDE-----KLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 24 as~~~~L~PV~a~ilg~l~LgE-----~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
.++|+.+--+.=.++-++=-.+ .++..|++...++++|+++..+.++
T Consensus 226 f~lYli~Ygi~RF~iEflR~d~~~~~~gl~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 226 FGFYVAFYCAGRFCVELLRDDPATLIAGIRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhhcCccHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555555555555431111 3789999999999999988766543
No 80
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=80.10 E-value=4 Score=33.26 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHhhcCccchh-hhhhhHHHHHHHHHHHHhCccch--h----hhhhhHHHHHHHHHHHHhccc
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVS-VFTPLSVVAVAVAASLILDEKLH--L----GSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as-~~~~L~PV~a~ilg~l~LgE~lt--~----~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
+...-....|+++++-+++.+. +++-+-..++++-|.++++|.-+ . ....|..+++.|+++....+.
T Consensus 222 ~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 222 TAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence 3445556678899999988765 44445566677778888887544 3 456778889999998765543
No 81
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.75 E-value=8.7 Score=28.48 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHhccchhhh
Q 037109 52 VLGATLIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 52 iiG~~lIl~Gv~l~~~~~~k~~~ 74 (118)
.+|.+++..|++.+...+++...
T Consensus 47 Alg~vL~~~g~~~~~~~~~~~~~ 69 (191)
T PF04156_consen 47 ALGVVLLSLGLLCLLSKRPVQSV 69 (191)
T ss_pred HHHHHHHHHHHHHHHHccccccc
Confidence 45778888888777666554433
No 82
>PF13994 PgaD: PgaD-like protein
Probab=77.97 E-value=3.2 Score=30.07 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhccch---hhhhhhc-cCCCCCCCcccceEEEeecCchHHHHHhhhcc
Q 037109 55 ATLIVCGLYAVLWGKGK---EMKKQSQ-LVPAANTSKESESIEISITSPNEEIKELNDSR 110 (118)
Q Consensus 55 ~~lIl~Gv~l~~~~~~k---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (118)
.++++.++.++.|++.. .++++.. .+...++.+-++....+ ++++.|+.+++
T Consensus 69 ~i~~~~a~~Li~Wa~yn~~Rf~~~~rr~~~~~~~~~elA~~f~l~----~~~l~~lr~~k 124 (138)
T PF13994_consen 69 LIALVNAVILILWAKYNRLRFRGRRRRRRPPPVSDEELARSFGLS----PEQLQQLRQAK 124 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhccCCCCCCHHHHHHHcCCC----HHHHHHHHhCC
Confidence 35555666666676532 2222222 22235555666655543 78888888765
No 83
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=77.48 E-value=2.7 Score=33.20 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHH
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLI 58 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lI 58 (118)
..+++=.+-.+.+|+.+...=..-..+.-++++++++++++.+++...++|++++
T Consensus 190 ~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 190 LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 3455556677888899988888888999999999999999999999999998753
No 84
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=74.81 E-value=1 Score=37.10 Aligned_cols=84 Identities=14% Similarity=0.120 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhcCccchhhhh-hhHHHHHHHHHHHHhCccchhhhhh----hHHHHHHHHHHHHhccchhhhhhhccCCC
Q 037109 8 MVTMTSWCVHIRGPLFVSVFT-PLSVVAVAVAASLILDEKLHLGSVL----GATLIVCGLYAVLWGKGKEMKKQSQLVPA 82 (118)
Q Consensus 8 ay~l~~~ai~~~Gp~~as~~~-~L~PV~a~ilg~l~LgE~lt~~~ii----G~~lIl~Gv~l~~~~~~k~~~~~~~~~~~ 82 (118)
+-..|+++++..|.+++.-.. -.+-|-+.++|++.+||.-+..+++ ..++++.|+++..|.++ +++++++.
T Consensus 72 GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~----~nk~~~~~ 147 (288)
T COG4975 72 GQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR----NNKEEENP 147 (288)
T ss_pred hhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc----ccccccCh
Confidence 445677888888888876444 4566778999999999999988764 45788889888666543 33333344
Q ss_pred CCCCcccceEEEe
Q 037109 83 ANTSKESESIEIS 95 (118)
Q Consensus 83 ~~~~~~~~~~~~~ 95 (118)
.+-+|-...+.+|
T Consensus 148 ~n~kkgi~~L~iS 160 (288)
T COG4975 148 SNLKKGIVILLIS 160 (288)
T ss_pred Hhhhhheeeeeee
Confidence 4444555555443
No 85
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.48 E-value=0.81 Score=38.31 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=46.2
Q ss_pred HHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHH
Q 037109 10 TMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYA 64 (118)
Q Consensus 10 ~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l 64 (118)
...|.|++.+|-++-=+==.+..+|++++.+++|++.=+..-..++.+|+.|..+
T Consensus 117 ~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 117 SFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred hccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 3456788888877666666788999999999999999999999999999998654
No 86
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.61 E-value=7.8 Score=32.44 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=52.0
Q ss_pred HHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109 12 TSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 12 ~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~ 74 (118)
-.||.+..+++..++.--..-..+.+-+.++.+.++++..++|..+-+.|=.+.+..+.|+++
T Consensus 245 s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~ 307 (314)
T KOG1444|consen 245 SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK 307 (314)
T ss_pred HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence 458999999999999987777778888888999999999999998888887777766655444
No 87
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=73.06 E-value=5.7 Score=28.93 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhcCccchhhh-hhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHH
Q 037109 8 MVTMTSWCVHIRGPLFVSVF-TPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAV 65 (118)
Q Consensus 8 ay~l~~~ai~~~Gp~~as~~-~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~ 65 (118)
+..+|++.+++.+-+.+.-+ +.+.-.|++++|..+-.|.-.-.-++|..+++.|+.++
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 34678888888887766544 44667788899977555555556788999999999875
No 88
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=72.53 E-value=16 Score=26.76 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=44.2
Q ss_pred ehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhhh
Q 037109 3 VGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMKK 75 (118)
Q Consensus 3 ~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~~ 75 (118)
++.++-|..-.+..||-|.++.+++ .-+++.+.|.+++. ++ +.++| -+.|.++..+-+.|+.++
T Consensus 42 l~~~~d~~~~~~~ak~~G~s~~~~~---ga~iG~IvG~f~~~-p~--G~iiG---~~~Ga~l~El~~~~~~~~ 105 (140)
T PF04306_consen 42 LGEVLDYLAGAYGAKRFGASRWGIW---GAIIGGIVGFFVLP-PL--GLIIG---PFLGAFLGELLRGKDFRR 105 (140)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHH---HHHHHHHHHHHHhh-HH--HHHHH---HHHHHHHHHHHhCCCHHH
Confidence 4567789999999999999999987 45667777776665 11 33333 355778877755555443
No 89
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.20 E-value=9.4 Score=28.68 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=35.9
Q ss_pred HHHhhcCccchh-hhhhhHHHHHHHHHHHHhC----ccchhhhhhhHHHHHHHHHHHHhcc
Q 037109 14 WCVHIRGPLFVS-VFTPLSVVAVAVAASLILD----EKLHLGSVLGATLIVCGLYAVLWGK 69 (118)
Q Consensus 14 ~ai~~~Gp~~as-~~~~L~PV~a~ilg~l~Lg----E~lt~~~iiG~~lIl~Gv~l~~~~~ 69 (118)
+...++|++.+- +...-+-+.+.++..+=+. .++++..++|.+++++|+++.++.+
T Consensus 88 ~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 88 LLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 444555554433 2333344455555555444 7899999999999999977766554
No 90
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=71.89 E-value=6.8 Score=28.08 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109 27 FTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 27 ~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
|--+--+.+.+.++.+=|.+++.+.++|+++.+.|+.+..+++|
T Consensus 63 YGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 63 YGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred hhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 33344566788889999999999999999999999998887754
No 91
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.27 E-value=0.99 Score=37.80 Aligned_cols=52 Identities=23% Similarity=0.095 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhhhhhccCCCCC
Q 037109 33 VAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMKKQSQLVPAAN 84 (118)
Q Consensus 33 V~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~~~~~~~~~~~ 84 (118)
..-+++++.+++|..+..-+-|-++++.|-.+..|.|.++.+++.++.+...
T Consensus 293 ~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~s~~~ 344 (347)
T KOG1442|consen 293 AAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQRSPAT 344 (347)
T ss_pred HHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCCCccc
Confidence 3347899999999999999999999999999999999998888877776554
No 92
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=68.70 E-value=1.1 Score=37.89 Aligned_cols=67 Identities=16% Similarity=0.286 Sum_probs=57.0
Q ss_pred ehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhcc
Q 037109 3 VGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGK 69 (118)
Q Consensus 3 ~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 69 (118)
++|++-..+-||+++.+.-+.-.+.-.-.++|-.++|.+|==|.++|.-..-..+|.+|+++..+..
T Consensus 92 lata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks 158 (349)
T KOG1443|consen 92 LATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS 158 (349)
T ss_pred hhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence 3556666677888888888888888889999999999999999999999999999999988766554
No 93
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=67.42 E-value=0.56 Score=38.93 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHH
Q 037109 7 LMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYA 64 (118)
Q Consensus 7 iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l 64 (118)
++..+-|.++++..-+++-+.-.++|++++++++++.+|..+...+.-.+.|..|+.+
T Consensus 95 ~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~i 152 (316)
T KOG1441|consen 95 ISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAI 152 (316)
T ss_pred HHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEE
Confidence 4556667788888889999999999999999999999999887655555444444444
No 94
>PRK11469 hypothetical protein; Provisional
Probab=64.38 E-value=8 Score=29.58 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=31.9
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhH-HHHHHHHHHHH
Q 037109 21 PLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGA-TLIVCGLYAVL 66 (118)
Q Consensus 21 p~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~-~lIl~Gv~l~~ 66 (118)
+...+.+..+.|+++..+|..+-+=...+.+++|+ ++++.|+++..
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446788888998888888665555556677776 45566888765
No 95
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=62.75 E-value=10 Score=22.57 Aligned_cols=33 Identities=30% Similarity=0.318 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCccchhhhhhhHHHHHHHHHH
Q 037109 32 VVAVAVAASLILDEKLHLGSVLGATLIVCGLYA 64 (118)
Q Consensus 32 PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l 64 (118)
|+.+.+.|.+.|=-+--..-++|.-+|+.|+.-
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~lg 33 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLLG 33 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888899998888888889999999999864
No 96
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=62.10 E-value=7.4 Score=32.64 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhhh
Q 037109 29 PLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMKK 75 (118)
Q Consensus 29 ~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~~ 75 (118)
...++..++++|+++|.+-+..|+...+++-+|++++...+.++-+.
T Consensus 99 sgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 99 SGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred cCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 34678899999999999999999999999999999999887666554
No 97
>COG2149 Predicted membrane protein [Function unknown]
Probab=61.44 E-value=14 Score=27.01 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhcc
Q 037109 5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGK 69 (118)
Q Consensus 5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 69 (118)
|.+++..+..++.+..|... .....+.+|..+|+.|+.+.-.+.
T Consensus 32 TsLallafGvai~~f~~~l~---------------------~~~~r~~lg~fii~~gil~~a~g~ 75 (120)
T COG2149 32 TSLALLAFGVAIDQFVPFLA---------------------TPVIRELLGVFLILVGILLAALGA 75 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHh---------------------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666555444 556677888888888888765443
No 98
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=57.64 E-value=4.9 Score=33.28 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchh
Q 037109 31 SVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKE 72 (118)
Q Consensus 31 ~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~ 72 (118)
-||=.+++|+++++.+-+|..+.-..+|+.|+.+..+...|.
T Consensus 121 KPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv 162 (337)
T KOG1580|consen 121 KPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKV 162 (337)
T ss_pred CCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccccc
Confidence 355568999999999999999999999999999999875544
No 99
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=57.48 E-value=15 Score=22.94 Aligned_cols=54 Identities=7% Similarity=0.083 Sum_probs=32.1
Q ss_pred hHHHHHHHHHH--HhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHH
Q 037109 5 SGLMVTMTSWC--VHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLI 58 (118)
Q Consensus 5 S~iay~l~~~a--i~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lI 58 (118)
.+++|.+...- ..-.-+...+.+..+.|..+..+|..+-+-.-.+.+++|+++.
T Consensus 8 vg~~~g~~~~~~~~~~~~~~~ig~~~~~~~~~G~~~G~~~~~~~~~~~~~igg~iL 63 (67)
T PF02659_consen 8 VGISYGLRGISRRIILLIALIIGIFQFIMPLLGLLLGRRLGRFIGSYAEWIGGIIL 63 (67)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455444222 2233445556667788888888888777755556666666544
No 100
>PRK10655 potE putrescine transporter; Provisional
Probab=53.97 E-value=38 Score=28.01 Aligned_cols=48 Identities=10% Similarity=-0.077 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhhhhh
Q 037109 30 LSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMKKQS 77 (118)
Q Consensus 30 L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~~~~ 77 (118)
+.|+++.++..+.+--........|..+++.|+.+.-+..+|++++++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~ 436 (438)
T PRK10655 389 FIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYGLISPRFELKNK 436 (438)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 556666555544333222233466788888887776554444444433
No 101
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=53.79 E-value=38 Score=29.11 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHhhcCccchhhhhhhH---HHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVSVFTPLS---VVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL 66 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~---PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 66 (118)
.-..+-+++-+..++.|+.+++++.... .+...+.+++..+.+. ..+...+.+.|+.++.
T Consensus 305 ~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~---~~~s~~~l~~gi~~SR 367 (432)
T PF06963_consen 305 FGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF---SSISAYLLLGGIALSR 367 (432)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHHHHHH
Confidence 3456788999999999999999877543 3344555666666554 4555666677777765
No 102
>PRK01637 hypothetical protein; Reviewed
Probab=53.37 E-value=46 Score=26.52 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHhccchhhh
Q 037109 54 GATLIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 54 G~~lIl~Gv~l~~~~~~k~~~ 74 (118)
+.++++++.+-..+.+.|+.+
T Consensus 253 ~~ilL~Gaelna~~~~~~~~~ 273 (286)
T PRK01637 253 WCIVLLGAEITATLGEYRKLK 273 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444433444434433
No 103
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=52.35 E-value=22 Score=30.16 Aligned_cols=63 Identities=11% Similarity=0.004 Sum_probs=44.6
Q ss_pred HHHHHHHHhhcCccch-hhhhhhHHHHHHHHHHHHhCc-------cchhhhhhhHHHHHHHHHHHHhccch
Q 037109 9 VTMTSWCVHIRGPLFV-SVFTPLSVVAVAVAASLILDE-------KLHLGSVLGATLIVCGLYAVLWGKGK 71 (118)
Q Consensus 9 y~l~~~ai~~~Gp~~a-s~~~~L~PV~a~ilg~l~LgE-------~lt~~~iiG~~lIl~Gv~l~~~~~~k 71 (118)
-..|-.+++++|-+.. |+.+-+.-++++++--++.|+ +-....++|.++.++|+.++-+.-..
T Consensus 87 gltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 87 GLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred hhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHh
Confidence 3456678888886653 556667777888887776553 33446788999999999998876433
No 104
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=51.54 E-value=26 Score=24.45 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcc-chhhhhhhcc
Q 037109 56 TLIVCGLYAVLWGK-GKEMKKQSQL 79 (118)
Q Consensus 56 ~lIl~Gv~l~~~~~-~k~~~~~~~~ 79 (118)
+++++..|+..+++ +|+.++.+++
T Consensus 16 vl~~~ifyFli~RPQrKr~K~~~~m 40 (97)
T COG1862 16 VLIFAIFYFLIIRPQRKRMKEHQEL 40 (97)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 44444445544443 4445544443
No 105
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=51.22 E-value=12 Score=30.20 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=19.0
Q ss_pred hhhhhhhHHHHHHHHHHHHhccchh
Q 037109 48 HLGSVLGATLIVCGLYAVLWGKGKE 72 (118)
Q Consensus 48 t~~~iiG~~lIl~Gv~l~~~~~~k~ 72 (118)
.+..++|.+++++|..+..+-|...
T Consensus 115 ~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 115 PWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hHHHHHHHHHHHHHHHheeeecCCC
Confidence 5677899999999988877655444
No 106
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=49.28 E-value=16 Score=30.55 Aligned_cols=54 Identities=9% Similarity=0.022 Sum_probs=39.7
Q ss_pred HHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHH
Q 037109 10 TMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAV 65 (118)
Q Consensus 10 ~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~ 65 (118)
.+.-..++.-|++..-+-+.-.-.++.+. ..+|=.+.|.-.+..+.+..|+++.
T Consensus 244 sl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiY 297 (336)
T KOG2766|consen 244 SLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIY 297 (336)
T ss_pred HhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEe
Confidence 33345667777777776666666777776 4455569999999999999998875
No 107
>PRK15049 L-asparagine permease; Provisional
Probab=49.19 E-value=1.2e+02 Score=26.04 Aligned_cols=11 Identities=9% Similarity=0.160 Sum_probs=6.2
Q ss_pred hhhHHHHHHHH
Q 037109 28 TPLSVVAVAVA 38 (118)
Q Consensus 28 ~~L~PV~a~il 38 (118)
.+..++++.++
T Consensus 422 ~p~~~~~~l~~ 432 (499)
T PRK15049 422 APFTSWLTLLF 432 (499)
T ss_pred ccHHHHHHHHH
Confidence 56666665443
No 108
>PF15345 TMEM51: Transmembrane protein 51
Probab=47.12 E-value=17 Score=29.34 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHhccchhhhh
Q 037109 53 LGATLIVCGLYAVLWGKGKEMKK 75 (118)
Q Consensus 53 iG~~lIl~Gv~l~~~~~~k~~~~ 75 (118)
.|.+|.+..+.+..+.|+|++..
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq~ 89 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQG 89 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 35666666766666666555443
No 109
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=46.67 E-value=22 Score=30.12 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=31.4
Q ss_pred CccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109 20 GPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL 66 (118)
Q Consensus 20 Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 66 (118)
+++.=.+.=.+-..+-=+++...-.|.++..|+.|.++.+.|+++.+
T Consensus 287 SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 287 SATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred hHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334445555579999999999999999999865
No 110
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=44.46 E-value=22 Score=24.89 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=22.9
Q ss_pred chhhhhhhHHHHHHHHHHHHhccchhhhhhh
Q 037109 47 LHLGSVLGATLIVCGLYAVLWGKGKEMKKQS 77 (118)
Q Consensus 47 lt~~~iiG~~lIl~Gv~l~~~~~~k~~~~~~ 77 (118)
+++..+.|+++.++=+|++.|.++|+.|.+.
T Consensus 35 m~~lvI~~iFil~VilwfvCC~kRkrsRrPI 65 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWFVCCKKRKRSRRPI 65 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 5677788887777778888888777666443
No 111
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=44.09 E-value=21 Score=26.78 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=38.3
Q ss_pred hhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109 26 VFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 26 ~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
.+....+++.++.++.+.+++.+..+++..+++..|+....+...
T Consensus 9 ~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~ 53 (222)
T TIGR00803 9 IFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDD 53 (222)
T ss_pred HHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHH
Confidence 445567889999999999999999999999999999988666543
No 112
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=43.98 E-value=19 Score=25.57 Aligned_cols=12 Identities=25% Similarity=0.125 Sum_probs=6.3
Q ss_pred ccCCCCCCCccc
Q 037109 78 QLVPAANTSKES 89 (118)
Q Consensus 78 ~~~~~~~~~~~~ 89 (118)
.......|.|-.
T Consensus 30 G~~P~~gt~w~~ 41 (130)
T PF12273_consen 30 GLQPIYGTRWMA 41 (130)
T ss_pred CCCCcCCceecC
Confidence 444555555554
No 113
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=42.24 E-value=55 Score=23.53 Aligned_cols=64 Identities=13% Similarity=0.255 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhcCccch----hhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109 7 LMVTMTSWCVHIRGPLFV----SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 7 iay~l~~~ai~~~Gp~~a----s~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
++..+|.|......+... +.|--+--+.+.+..++.=|-.++.+.++|+++-++|+.+..++++
T Consensus 40 ~sL~lf~~llT~~~~~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 40 LSLALFGWLLTLQPAAAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHHHHHHHHHHcCCchhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 344445555444443311 2233333445566667777778888888888888888776666543
No 114
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=42.07 E-value=1.6e+02 Score=27.00 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=12.1
Q ss_pred hHHHHHhhhccCCCccCCC
Q 037109 100 NEEIKELNDSRKGDQVLPN 118 (118)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~ 118 (118)
++||-..-+...||-+-||
T Consensus 578 ~~~i~~~t~~~~~~~~~~n 596 (618)
T KOG3762|consen 578 QNEIPKATRNERGDGANPN 596 (618)
T ss_pred cchhhhhcccCcccccCcC
Confidence 5566666666667766665
No 115
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=41.66 E-value=29 Score=26.60 Aligned_cols=34 Identities=15% Similarity=0.005 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHH
Q 037109 30 LSVVAVAVAASLILDEKLHLGSVLGATLIVCGLY 63 (118)
Q Consensus 30 L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~ 63 (118)
+...++++.|....+.....--+.|.+-.++|-+
T Consensus 13 lv~~~~lv~G~a~a~~~~~~vl~~gla~~iAga~ 46 (213)
T PF01988_consen 13 LVTTFGLVAGVAGAGVSSSVVLLAGLAGLIAGAI 46 (213)
T ss_pred HHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHH
Confidence 4556777778777777666666666665555544
No 116
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=41.40 E-value=22 Score=25.77 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHhccch
Q 037109 54 GATLIVCGLYAVLWGKGK 71 (118)
Q Consensus 54 G~~lIl~Gv~l~~~~~~k 71 (118)
|.+++++.++++.++++|
T Consensus 76 GvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 76 GVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 444444444444443333
No 117
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=40.00 E-value=25 Score=28.13 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=30.2
Q ss_pred chhhhhhhHHHHHHHHHHHH-----hCccchhhhhhhHHHHHHHHHHHHhc
Q 037109 23 FVSVFTPLSVVAVAVAASLI-----LDEKLHLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 23 ~as~~~~L~PV~a~ilg~l~-----LgE~lt~~~iiG~~lIl~Gv~l~~~~ 68 (118)
..++|.-+-.+.=.++.++= +.-.+|..|+++..+++.|+.+..+.
T Consensus 206 ~f~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~~~~ 256 (269)
T PRK12437 206 VFALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILIIYR 256 (269)
T ss_pred hHHHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHHHHH
Confidence 34556656666655655441 11137899999999999998876543
No 118
>PF14963 CAML: Calcium signal-modulating cyclophilin ligand
Probab=39.50 E-value=39 Score=27.68 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHH---HHHhCccchhhhhhhHHHHHHHHH
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAA---SLILDEKLHLGSVLGATLIVCGLY 63 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg---~l~LgE~lt~~~iiG~~lIl~Gv~ 63 (118)
|+.+|..+-.|+.+++ ++|.|+..+=...+| ++--||.-....++-++|++.||-
T Consensus 167 ~~~lAv~VR~fvCkyL-----si~~pfl~l~l~~~gl~~~~~k~~k~~~~tvltaaL~lsGip 224 (263)
T PF14963_consen 167 CALLAVFVRLFVCKYL-----SIFAPFLTLQLAYMGLSKYFPKGEKKAKTTVLTAALLLSGIP 224 (263)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcchhhcccccccCcchHHHHHHHHcCCC
Confidence 6778888888888876 555554444445555 666788888888888899888864
No 119
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=38.81 E-value=1.6e+02 Score=22.02 Aligned_cols=65 Identities=18% Similarity=0.164 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109 6 GLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 6 ~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~ 74 (118)
.....+..+.++++|..+.++=. +.-+..+++..--.++..++.|..+++.=+..+..+..-.+|
T Consensus 59 ~~T~G~~~~lm~~kgi~rm~lG~----~vm~~~~~llw~ggv~~~~IAg~~lv~filmvVLiPEpg~QR 123 (144)
T PF01350_consen 59 VMTLGVFWFLMRRKGIGRMSLGM----LVMAVAGYLLWMGGVPPGQIAGVLLVFFILMVVLIPEPGKQR 123 (144)
T ss_pred HHHHHHHHhhhcCCCcchhhHHH----HHHHHHHHHHHhcCCcHHHhHHHHHHHHHHHHhcccCCCCcC
Confidence 34455667788899999988644 333344444445567888888888887766666655443333
No 120
>COG1971 Predicted membrane protein [Function unknown]
Probab=38.80 E-value=65 Score=25.16 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=33.5
Q ss_pred chhhhhhhHHHHHHHHHHHHhCccchhhhhhhH-HHHHHHHHHHHhc
Q 037109 23 FVSVFTPLSVVAVAVAASLILDEKLHLGSVLGA-TLIVCGLYAVLWG 68 (118)
Q Consensus 23 ~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~-~lIl~Gv~l~~~~ 68 (118)
..+.+..+.|+++...+.++=+=.-.+.+++|. ++++.|+++..-+
T Consensus 42 ~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~ 88 (190)
T COG1971 42 IFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEG 88 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999988888877556667776654 6677888876544
No 121
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=38.07 E-value=90 Score=25.14 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=29.9
Q ss_pred hhhhhhhHHHHHHHHHHHHhCc---------cchhhhhhhHHHHHHHHHHHHhcc
Q 037109 24 VSVFTPLSVVAVAVAASLILDE---------KLHLGSVLGATLIVCGLYAVLWGK 69 (118)
Q Consensus 24 as~~~~L~PV~a~ilg~l~LgE---------~lt~~~iiG~~lIl~Gv~l~~~~~ 69 (118)
.++|.-+-.++=.++.++=-.+ .++..|++...+++.|+++..+.+
T Consensus 214 ~~~yli~Y~~~Rf~iEf~R~~~~~~~~~~~~~lt~~Q~~sl~~i~~g~~~~~~~~ 268 (278)
T TIGR00544 214 FGVYLIGYGIFRFIIEGLREPDLMLTEFSFLNISMGQILSLLMIAGILIIMLLAY 268 (278)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhhccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555442111 278999999999999998765543
No 122
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=37.85 E-value=64 Score=23.36 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=33.9
Q ss_pred chhhhhhhHHHHHHHHHHHHhccchhhhhhhccCCCCCCCcccceE----------EEeecCchHHHHHhhhc
Q 037109 47 LHLGSVLGATLIVCGLYAVLWGKGKEMKKQSQLVPAANTSKESESI----------EISITSPNEEIKELNDS 109 (118)
Q Consensus 47 lt~~~iiG~~lIl~Gv~l~~~~~~k~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 109 (118)
++...++|.+.++.+..+..|--....+. .+.+=++|+++-+-+ +.-+-|++.|=||.|++
T Consensus 39 m~ifmllG~L~~l~S~~VYfwIGmlStka--v~V~CP~C~K~TKmLGr~D~CM~C~~pLTLd~~legkef~~~ 109 (114)
T PF11023_consen 39 MVIFMLLGLLAILASTAVYFWIGMLSTKA--VQVECPNCGKQTKMLGRVDACMHCKEPLTLDPSLEGKEFDEK 109 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccc--eeeECCCCCChHhhhchhhccCcCCCcCccCchhhcchhhHh
Confidence 45566777777777777666765443332 233334444443221 12245788888887764
No 123
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=37.81 E-value=9.8 Score=31.43 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhh----hhHHHHHHHHHH
Q 037109 7 LMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSV----LGATLIVCGLYA 64 (118)
Q Consensus 7 iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~i----iG~~lIl~Gv~l 64 (118)
++-..+..+.++.|-...-.+.-+..|++++-|.+||+|+-|..++ +|.++++.|..+
T Consensus 221 ~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~ 282 (288)
T COG4975 221 IGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL 282 (288)
T ss_pred hhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence 3445566777788887777777788899999999999999998764 566666666554
No 124
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=37.69 E-value=50 Score=17.68 Aligned_cols=14 Identities=36% Similarity=0.377 Sum_probs=6.7
Q ss_pred hhhhhhhHHHHHHH
Q 037109 48 HLGSVLGATLIVCG 61 (118)
Q Consensus 48 t~~~iiG~~lIl~G 61 (118)
.+..++|.+++..+
T Consensus 11 ~~~~~~G~~l~~~~ 24 (34)
T TIGR01167 11 SLLLLLGLLLLGLG 24 (34)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455565444443
No 125
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=37.37 E-value=35 Score=21.29 Aligned_cols=22 Identities=27% Similarity=0.470 Sum_probs=14.2
Q ss_pred hhhhHHHHHHHHHHHHhccchh
Q 037109 51 SVLGATLIVCGLYAVLWGKGKE 72 (118)
Q Consensus 51 ~iiG~~lIl~Gv~l~~~~~~k~ 72 (118)
.+.++++.+.|+++..-++-|.
T Consensus 19 Li~A~vlfi~Gi~iils~kckC 40 (50)
T PF02038_consen 19 LIFAGVLFILGILIILSGKCKC 40 (50)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccc
Confidence 4556677788887766555443
No 126
>PF15471 TMEM171: Transmembrane protein family 171
Probab=37.26 E-value=47 Score=27.76 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=18.8
Q ss_pred hhhhhhHHHHHHHHHHHHhccchh
Q 037109 49 LGSVLGATLIVCGLYAVLWGKGKE 72 (118)
Q Consensus 49 ~~~iiG~~lIl~Gv~l~~~~~~k~ 72 (118)
..|++|-++++.|+.++-.+..|+
T Consensus 161 slQImGPlIVl~GLCFFVVAHvKK 184 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVKK 184 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeeee
Confidence 468999999999999877665443
No 127
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=36.78 E-value=29 Score=27.70 Aligned_cols=47 Identities=13% Similarity=0.264 Sum_probs=31.0
Q ss_pred hhhhhhhHHHHHHHHHHHHhCc-----cchhhhhhhHHHHHHHHHHHHhccc
Q 037109 24 VSVFTPLSVVAVAVAASLILDE-----KLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 24 as~~~~L~PV~a~ilg~l~LgE-----~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
.+.|.-+-.+.=.++..+=-.+ .++..|+++..+++.|+.+..+.++
T Consensus 209 f~~yl~~Y~~~Rf~iE~~R~~~~~~~~~ls~~Q~isl~~~~~gi~~~~~~~~ 260 (269)
T PRK00052 209 FGLYLIGYGLGRFFIEFFREPDAQLGGGLTMGQILSIPMILLGIILLIWAYR 260 (269)
T ss_pred HHHHHHHHHHHHHhhhhhccCchhhccCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555442222 2688999999999999987665533
No 128
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=36.52 E-value=1.2e+02 Score=25.41 Aligned_cols=41 Identities=20% Similarity=0.097 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHH-HhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109 29 PLSVVAVAVAASL-ILDEKLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 29 ~L~PV~a~ilg~l-~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
.+.++++.++..+ +..-. -....+|.++++.|+.+..+.++
T Consensus 391 ~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~y~~~~~ 432 (468)
T TIGR03810 391 LLIGLVALLYAVWLIYAAG-LKYLLLSAILYAPGIYFYARARK 432 (468)
T ss_pred HHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433332 33222 23567888899999988876433
No 129
>PRK10489 enterobactin exporter EntS; Provisional
Probab=36.30 E-value=96 Score=24.83 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhC-ccchhhhhhhHHHHHHHHHHHHhccc
Q 037109 32 VVAVAVAASLILD-EKLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 32 PV~a~ilg~l~Lg-E~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
++-..+.|++.-. .........|+.+.+.++.+....++
T Consensus 362 ~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 362 AIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred hHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 3444455544322 11223334455555555555444333
No 130
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=35.62 E-value=26 Score=20.91 Aligned_cols=17 Identities=29% Similarity=0.747 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHhccc
Q 037109 54 GATLIVCGLYAVLWGKG 70 (118)
Q Consensus 54 G~~lIl~Gv~l~~~~~~ 70 (118)
|.++++.|+++..|.++
T Consensus 22 ~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHHHHHhheEEec
Confidence 44555566666655544
No 131
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=35.56 E-value=6.6 Score=33.19 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=23.9
Q ss_pred HhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchh
Q 037109 16 VHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKE 72 (118)
Q Consensus 16 i~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~ 72 (118)
+....|-.=++-..+.-++++-+|.- +.++|++|+|++.++++++
T Consensus 305 ~G~G~PP~d~~S~lvi~i~~vgLG~P------------~l~li~Ggl~v~~~r~r~~ 349 (350)
T PF15065_consen 305 IGYGSPPVDSFSPLVIMIMAVGLGVP------------LLLLILGGLYVCLRRRRKR 349 (350)
T ss_pred cccCCCCccchhHHHHHHHHHHhhHH------------HHHHHHhhheEEEeccccC
Confidence 33333444344444444445445433 4577888888766655443
No 132
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=34.65 E-value=92 Score=24.37 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=27.7
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHH
Q 037109 21 PLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYA 64 (118)
Q Consensus 21 p~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l 64 (118)
.+...+......++.++....++|-+++...+.|.++ +.|+..
T Consensus 123 ~~l~v~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~-~iGi~V 165 (246)
T TIGR00966 123 FALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLT-IIGYSI 165 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHH-HHHHhc
Confidence 3344444444555666677778899999888876554 456553
No 133
>PRK02935 hypothetical protein; Provisional
Probab=34.33 E-value=90 Score=22.48 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHhCcc---chhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109 28 TPLSVVAVAVAASLILDEK---LHLGSVLGATLIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 28 ~~L~PV~a~ilg~l~LgE~---lt~~~iiG~~lIl~Gv~l~~~~~~k~~~ 74 (118)
+-+.-+..+-+|++| .+. ++...++|.+.++++..+..|......|
T Consensus 19 lvfiG~~vMy~Giff-~~~~~~m~ifm~~G~l~~l~S~vvYFwiGmlStk 67 (110)
T PRK02935 19 LVFIGFIVMYLGIFF-RESIIIMTIFMLLGFLAVIASTVVYFWIGMLSTK 67 (110)
T ss_pred HHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 334444445555433 332 3556778888888888887787654444
No 134
>PRK11562 nitrite transporter NirC; Provisional
Probab=34.10 E-value=40 Score=27.35 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=19.7
Q ss_pred chhhhhhhHHHHHHHHHHHHhccchhhhh
Q 037109 47 LHLGSVLGATLIVCGLYAVLWGKGKEMKK 75 (118)
Q Consensus 47 lt~~~iiG~~lIl~Gv~l~~~~~~k~~~~ 75 (118)
.+.+.++|+.++++..|....++++++++
T Consensus 229 vtLGNivGG~v~vg~~y~~~~~~~~~~~~ 257 (268)
T PRK11562 229 VTLGNTLSGAVFMGLGYWYATPKANRPVA 257 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCchh
Confidence 45677889988888877766555444443
No 135
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=33.78 E-value=1.3e+02 Score=19.22 Aligned_cols=41 Identities=7% Similarity=-0.136 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHhCcc---------chhhhhhhHHHHHHHHHHHHhc
Q 037109 28 TPLSVVAVAVAASLILDEK---------LHLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 28 ~~L~PV~a~ilg~l~LgE~---------lt~~~iiG~~lIl~Gv~l~~~~ 68 (118)
..+.|+++.+.+.-+++.. +.+++++-..+.-+.++++.+-
T Consensus 3 ll~iP~l~~l~~~p~~nr~~P~v~G~Pff~~w~~~wv~lts~~~~~~y~l 52 (66)
T PF11755_consen 3 LLLIPFLALLWGPPFYNRVEPTVFGMPFFYWWQLAWVVLTSVCMAIVYRL 52 (66)
T ss_pred hHHHHHHHHHHhHHHhccCCccccCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666664444432 3455555555544444444443
No 136
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=33.15 E-value=18 Score=29.38 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCCCCcccceEEEeecCchHHHHHhhhccCCC
Q 037109 82 AANTSKESESIEISITSPNEEIKELNDSRKGD 113 (118)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (118)
-..+|++-.+.......+++|+.+-..+++||
T Consensus 217 ~~~is~~~~~~~~~~~~~~~~~~~s~~~~~~d 248 (248)
T KOG0913|consen 217 LEGISKQESPTDTDVEEDSLEQRKSQKADKGD 248 (248)
T ss_pred ccccccCCCCCCchhhhhhHHHhhhhhhhccC
Confidence 44557777777778888888877766677776
No 137
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=33.06 E-value=1.7e+02 Score=25.63 Aligned_cols=55 Identities=9% Similarity=-0.000 Sum_probs=31.4
Q ss_pred HHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109 14 WCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 14 ~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 68 (118)
|...|.-+.+..++.-..|+-+.+.|++.=.-.+.....++++.++.+..+..+.
T Consensus 339 ~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 339 WVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444555666677788888888876544444444445555444444444433
No 138
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=32.83 E-value=1.6e+02 Score=24.40 Aligned_cols=17 Identities=6% Similarity=-0.187 Sum_probs=11.7
Q ss_pred hhhhHHHHHHHHHHHHh
Q 037109 27 FTPLSVVAVAVAASLIL 43 (118)
Q Consensus 27 ~~~L~PV~a~ilg~l~L 43 (118)
+.++.|+++.+...+++
T Consensus 386 ~~~~~~~~~~~~~~~~~ 402 (445)
T PRK10644 386 AYLAVTLIAFVYCIWAV 402 (445)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 55677888877776554
No 139
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=32.25 E-value=41 Score=26.27 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHH
Q 037109 29 PLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYA 64 (118)
Q Consensus 29 ~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l 64 (118)
-+.-+++++.|..--+.....--+.|.+-.++|-+-
T Consensus 18 Glvs~~alvaG~aga~~~~~~Ill~Gla~l~Aga~S 53 (218)
T cd02432 18 GIVSVAGLVVGVAAATASSFTILIAGLAGLVAGALS 53 (218)
T ss_pred hHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence 356677777777655666666666666666665443
No 140
>PRK09577 multidrug efflux protein; Reviewed
Probab=32.24 E-value=1.2e+02 Score=28.85 Aligned_cols=32 Identities=22% Similarity=0.048 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCccchhhhhhhHHHHHHHHHH
Q 037109 32 VVAVAVAASLILDEKLHLGSVLGATLIVCGLYA 64 (118)
Q Consensus 32 PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l 64 (118)
-+++++++.++.|.+++...++|.+ +++|+..
T Consensus 902 ~l~G~~~~l~l~g~~l~~~s~~G~i-~L~GivV 933 (1032)
T PRK09577 902 GVIGAVLGVTLRGMPNDIYFKVGLI-ATIGLSA 933 (1032)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHH-HHHHHHH
Confidence 3456888999999999999999877 7778775
No 141
>PRK09579 multidrug efflux protein; Reviewed
Probab=31.59 E-value=1.2e+02 Score=28.73 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCccchhhhhhhHHHHHHHHHH
Q 037109 33 VAVAVAASLILDEKLHLGSVLGATLIVCGLYA 64 (118)
Q Consensus 33 V~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l 64 (118)
+++++++.++.|.+++...++| +++++|+..
T Consensus 882 ~~G~~~~L~i~~~~l~~~s~~G-~i~L~GivV 912 (1017)
T PRK09579 882 ICGALIPLFLGVSSMNIYTQVG-LVTLIGLIS 912 (1017)
T ss_pred HHHHHHHHHHhCCCccHHHHHH-HHHHHHHHH
Confidence 3567888888899999999987 566777775
No 142
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=31.44 E-value=35 Score=26.68 Aligned_cols=35 Identities=9% Similarity=0.001 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHH
Q 037109 29 PLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLY 63 (118)
Q Consensus 29 ~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~ 63 (118)
-+..+++++.|..--+.....-.+.|.+-.++|-+
T Consensus 13 Glvt~~alvaG~aga~~~~~~ili~Gla~liAga~ 47 (225)
T cd02434 13 GIVTIFAIVAGVVGAGLSPFVILIIGFANLLADGI 47 (225)
T ss_pred hhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence 35667778888776777766666666666555543
No 143
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=31.04 E-value=83 Score=24.72 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhCcc
Q 037109 33 VAVAVAASLILDEK 46 (118)
Q Consensus 33 V~a~ilg~l~LgE~ 46 (118)
++.++..+.++++.
T Consensus 18 ~~~~~~~~~~~~~~ 31 (356)
T PRK10755 18 VFQLISVFWLWHES 31 (356)
T ss_pred HHHHHHHHHhcccc
Confidence 33333444445544
No 144
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=30.78 E-value=41 Score=23.62 Aligned_cols=31 Identities=10% Similarity=0.261 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhc-cchhhhhhhccCCCCCCCc
Q 037109 57 LIVCGLYAVLWG-KGKEMKKQSQLVPAANTSK 87 (118)
Q Consensus 57 lIl~Gv~l~~~~-~~k~~~~~~~~~~~~~~~~ 87 (118)
++++..|+..++ .+|++++.+++.++...+.
T Consensus 26 ii~~i~yf~~~RpqkK~~k~~~~~~~~Lk~Gd 57 (106)
T PRK05585 26 VFFAIFYFLIIRPQQKRQKEHKKMLSSLAKGD 57 (106)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCCC
Confidence 333344444444 4555555555444444333
No 145
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=30.29 E-value=1.5e+02 Score=22.46 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=44.5
Q ss_pred ehhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109 3 VGSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 3 ~~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
+++.++..++..++++.++...+...++.-++ .+...-.++-..+..+|-+++...+.++.|.-+
T Consensus 73 ~~s~~~~~vtl~~~a~~~~~~~~~l~~~~~~~---~ai~~~~~~~~~~~~~~Pi~~~~~i~~~~w~~r 137 (186)
T PF12036_consen 73 IGSFLSIWVTLCAMARLDEPLKSVLHYFGALV---IAIFQQKDRWSLWNTIGPILIGLLILLVSWLYR 137 (186)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH---HHHHHhhCcccchhhHHHHHHHHHHHHHHHhee
Confidence 56777888888888888887776665544443 344445677777777877777777777776543
No 146
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=29.65 E-value=90 Score=26.90 Aligned_cols=28 Identities=25% Similarity=0.308 Sum_probs=19.1
Q ss_pred CCcccceEEEeecCchHHHHHhhhccCC
Q 037109 85 TSKESESIEISITSPNEEIKELNDSRKG 112 (118)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (118)
|+.+-+-=-.+++++-.|++++-++|+=
T Consensus 321 ts~iqm~hh~si~~nT~eLR~ms~~R~v 348 (386)
T PF05510_consen 321 TSDIQMVHHSSIRDNTKELRQMSDQRQV 348 (386)
T ss_pred cCccccccccccccCHHHHHhhhccCCC
Confidence 3333333345677999999999998753
No 147
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=28.67 E-value=1.3e+02 Score=24.35 Aligned_cols=45 Identities=9% Similarity=0.084 Sum_probs=31.1
Q ss_pred cCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHH
Q 037109 19 RGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYA 64 (118)
Q Consensus 19 ~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l 64 (118)
.-....++......++.++....++|-+++...++|.+. +.|+.+
T Consensus 150 ~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~~siaall~-liG~sV 194 (289)
T PRK13022 150 WRFALGAIIALLHDVIITLGIFSLFQIEFDLTVIAALLT-IIGYSL 194 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHH-HHHHhe
Confidence 334555555556667777778888999999888876554 467654
No 148
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=28.55 E-value=44 Score=22.40 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=16.0
Q ss_pred HHHHHHHHHhc-cchhhhhhhccCCCCCCCccc
Q 037109 58 IVCGLYAVLWG-KGKEMKKQSQLVPAANTSKES 89 (118)
Q Consensus 58 Il~Gv~l~~~~-~~k~~~~~~~~~~~~~~~~~~ 89 (118)
+++..|+..++ ++|++++.+++-++...+.+.
T Consensus 12 ~~~i~yf~~~rpqkK~~k~~~~m~~~L~~Gd~V 44 (84)
T TIGR00739 12 IFLIFYFLIIRPQRKRRKAHKKLIESLKKGDKV 44 (84)
T ss_pred HHHHHHHheechHHHHHHHHHHHHHhCCCCCEE
Confidence 34444555543 455555555555555444443
No 149
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=28.26 E-value=72 Score=23.30 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCccchh-------hhhhhHHHHHHHHHH
Q 037109 34 AVAVAASLILDEKLHL-------GSVLGATLIVCGLYA 64 (118)
Q Consensus 34 ~a~ilg~l~LgE~lt~-------~~iiG~~lIl~Gv~l 64 (118)
++.++++.++||.+.. ++++|+++.+..+.+
T Consensus 11 ~~ii~~~~~~G~~i~~~l~lplPGsIiGmvLLfllL~~ 48 (128)
T COG1380 11 LAIILGFLFLGEWIASLLHLPLPGSIIGMVLLFLLLAL 48 (128)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHh
Confidence 5678888888888765 789999888877654
No 150
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=28.17 E-value=45 Score=27.78 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=18.1
Q ss_pred chhhhhhhHHHHHHHHHHHHhccchh
Q 037109 47 LHLGSVLGATLIVCGLYAVLWGKGKE 72 (118)
Q Consensus 47 lt~~~iiG~~lIl~Gv~l~~~~~~k~ 72 (118)
+..+.++-+++|++|+++-.|.+.|.
T Consensus 5 l~~~livig~i~i~~il~~~~~r~r~ 30 (293)
T PRK00269 5 LREWLIVIGIIVIAGILFDGWRRMRG 30 (293)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566678888899888877654
No 151
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=27.93 E-value=61 Score=22.25 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=17.1
Q ss_pred hhhhhhhHHHHHHHHHHHHhc
Q 037109 48 HLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 48 t~~~iiG~~lIl~Gv~l~~~~ 68 (118)
+|...+|..++++|+.+..+-
T Consensus 66 ~WN~~IGfg~~~~Gf~mt~rW 86 (87)
T PF06781_consen 66 NWNLAIGFGLMIVGFLMTMRW 86 (87)
T ss_pred chHHHHHHHHHHHHHHHHccc
Confidence 467789999999999987643
No 152
>PRK10720 uracil transporter; Provisional
Probab=27.89 E-value=1.2e+02 Score=25.78 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=25.2
Q ss_pred eehhHHHHHHHHHHHh-hcCccchhhhhhhHHHHH
Q 037109 2 IVGSGLMVTMTSWCVH-IRGPLFVSVFTPLSVVAV 35 (118)
Q Consensus 2 I~~S~iay~l~~~ai~-~~Gp~~as~~~~L~PV~a 35 (118)
+++++++-.+|.+..+ |++-..-+.|.++.|..+
T Consensus 46 l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~ 80 (428)
T PRK10720 46 LLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLL 80 (428)
T ss_pred HHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHH
Confidence 4789999999998885 666666666666666654
No 153
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=27.54 E-value=1.4e+02 Score=24.08 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=28.7
Q ss_pred hhhhhhhHHHHHHHHHHHHhC---ccchhhhhhhHHHHHHHHHHHH
Q 037109 24 VSVFTPLSVVAVAVAASLILD---EKLHLGSVLGATLIVCGLYAVL 66 (118)
Q Consensus 24 as~~~~L~PV~a~ilg~l~Lg---E~lt~~~iiG~~lIl~Gv~l~~ 66 (118)
...+.-+..+-+.++|+++-. +.+.....+|..+++.|+++..
T Consensus 86 l~~~iii~tiP~~i~Gl~~~~~i~~~l~~~~~v~~~Lii~gilL~~ 131 (268)
T PRK00281 86 LLLLVIVATIPAGVLGLLFKDFIKEHLFSPIVVAIALIVGGILLLW 131 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 445566677777888865432 2232335899999999998854
No 154
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=27.37 E-value=65 Score=22.21 Aligned_cols=21 Identities=24% Similarity=0.195 Sum_probs=17.1
Q ss_pred hhhhhhhHHHHHHHHHHHHhc
Q 037109 48 HLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 48 t~~~iiG~~lIl~Gv~l~~~~ 68 (118)
.|...+|..++++|+.+..+.
T Consensus 66 ~WN~~IGfg~~~~G~~mt~rW 86 (87)
T PRK02251 66 AWNLVIGFGLIMAGFGMTTQW 86 (87)
T ss_pred chhHHHHHHHHHHHHHHHccc
Confidence 467789999999999987743
No 155
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=27.34 E-value=1.7e+02 Score=24.67 Aligned_cols=42 Identities=17% Similarity=-0.035 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhc
Q 037109 27 FTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 27 ~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~ 68 (118)
+.+..|+++.++..+++--.-......|.++++.|+.+..+.
T Consensus 394 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~ 435 (473)
T TIGR00905 394 KALIVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRA 435 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666554443332222334567888888897665553
No 156
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=26.89 E-value=38 Score=24.26 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=9.6
Q ss_pred HHHHHHHHHH-hccchhhhhhhcc
Q 037109 57 LIVCGLYAVL-WGKGKEMKKQSQL 79 (118)
Q Consensus 57 lIl~Gv~l~~-~~~~k~~~~~~~~ 79 (118)
+++.+++.+. +.++|++++.+++
T Consensus 10 vv~~~i~yf~iRPQkKr~Ke~~em 33 (113)
T PRK06531 10 VVMLGLIFFMQRQQKKQAQERQNQ 33 (113)
T ss_pred HHHHHHHHheechHHHHHHHHHHH
Confidence 3344443333 3344444444443
No 157
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=26.66 E-value=57 Score=21.63 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=12.0
Q ss_pred HHHHHHHHHHh-ccchhhhhhhccCCCCCCCccc
Q 037109 57 LIVCGLYAVLW-GKGKEMKKQSQLVPAANTSKES 89 (118)
Q Consensus 57 lIl~Gv~l~~~-~~~k~~~~~~~~~~~~~~~~~~ 89 (118)
++++..|+..+ +++|++++.++.-++...+.+.
T Consensus 10 ~~~~i~yf~~~rpqkk~~k~~~~m~~~Lk~Gd~V 43 (82)
T PF02699_consen 10 IIFVIFYFLMIRPQKKQQKEHQEMLASLKPGDEV 43 (82)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTGGG--------
T ss_pred HHHHHHhhheecHHHHHHHHHHHHHHcCCCCCEE
Confidence 33344444443 3455555555555544444443
No 158
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=26.55 E-value=31 Score=25.50 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=16.5
Q ss_pred CccchhhhhhhHHHHHHHHHHH
Q 037109 44 DEKLHLGSVLGATLIVCGLYAV 65 (118)
Q Consensus 44 gE~lt~~~iiG~~lIl~Gv~l~ 65 (118)
+......++.|-++.-.|+++.
T Consensus 74 n~~~si~~~~G~vlLs~GLmlL 95 (129)
T PF15099_consen 74 NSHGSIISIFGPVLLSLGLMLL 95 (129)
T ss_pred cCCcchhhhehHHHHHHHHHHH
Confidence 6666667788888888888763
No 159
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=25.85 E-value=21 Score=30.17 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCccchhhhhh
Q 037109 6 GLMVTMTSWCVHIRGPLFVSVFTP 29 (118)
Q Consensus 6 ~iay~l~~~ai~~~Gp~~as~~~~ 29 (118)
+++.++|.|.+++.||++-.+..+
T Consensus 119 aL~vW~Ym~lLr~~GAs~WtiLaF 142 (381)
T PF05297_consen 119 ALGVWFYMWLLRELGASFWTILAF 142 (381)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345566778999999987665443
No 160
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=25.67 E-value=71 Score=22.05 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=17.1
Q ss_pred hhhhhhhHHHHHHHHHHHHhc
Q 037109 48 HLGSVLGATLIVCGLYAVLWG 68 (118)
Q Consensus 48 t~~~iiG~~lIl~Gv~l~~~~ 68 (118)
.|...+|..++++|+.+..+.
T Consensus 66 ~WN~~IGFg~~i~G~lmt~rW 86 (87)
T PRK00159 66 PWNYAIGFALMITGLLMTMRW 86 (87)
T ss_pred chhHHHHHHHHHHHHHHhccc
Confidence 367889999999999987643
No 161
>PLN02822 serine palmitoyltransferase
Probab=25.62 E-value=15 Score=31.45 Aligned_cols=59 Identities=14% Similarity=0.059 Sum_probs=41.9
Q ss_pred HHHhCccchhhhhhhHHHHHHHHHHHHhccchhh--hhhhccCCCCCCCcccceEEEeecC
Q 037109 40 SLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEM--KKQSQLVPAANTSKESESIEISITS 98 (118)
Q Consensus 40 ~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (118)
.+++|.......++-.+|++..+++....+.|.+ +=.+.+.+..-.+|+-||+.-.+++
T Consensus 27 ~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~l~~~~~~ 87 (481)
T PLN02822 27 AVVFGVHIGGHLVVEGLLIVVIVFLLSQKSYKPPKRPLTEKEIDELCDEWTPEPLIPPITE 87 (481)
T ss_pred eeEeecCCCchhHHHHHHHHHHHHHHHcCcCCCCCCCCCHHHHHHHHhcCCCCCCCCCCch
Confidence 3467888999999999999999998875554432 2233344566678888898855443
No 162
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=25.57 E-value=86 Score=27.26 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhhhhhccCCCCCCCcccceEEEeecCchHHHHHhhhccC
Q 037109 32 VVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMKKQSQLVPAANTSKESESIEISITSPNEEIKELNDSRK 111 (118)
Q Consensus 32 PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (118)
+++.+.+..+++++.+....++ ++++.|-++-.+.++|.++.-+....... .++.-+ .+.+++.-...+-++
T Consensus 4 l~~~a~~~~~~~~~~~~~~~i~--~~~~~~~~l~~~~~~~a~~~l~~l~~~~~--~~~~v~----r~g~~~~i~~~~l~~ 75 (536)
T TIGR01512 4 LMALAALGAVAIGEYLEGALLL--LLFSIGETLEEYASGRARRALKALMELAP--DTARVL----RGGSLEEVAVEELKV 75 (536)
T ss_pred HHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CEEEEE----ECCEEEEEEHHHCCC
Confidence 3444444445667644443332 34455666666655555444433222111 111111 222333344566778
Q ss_pred CCccC
Q 037109 112 GDQVL 116 (118)
Q Consensus 112 ~~~~~ 116 (118)
||.|.
T Consensus 76 GDiv~ 80 (536)
T TIGR01512 76 GDVVV 80 (536)
T ss_pred CCEEE
Confidence 88763
No 163
>PF15102 TMEM154: TMEM154 protein family
Probab=25.47 E-value=51 Score=24.80 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHhccchhh
Q 037109 54 GATLIVCGLYAVLWGKGKEM 73 (118)
Q Consensus 54 G~~lIl~Gv~l~~~~~~k~~ 73 (118)
+++|++..++++...+||+.
T Consensus 68 LvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHheeEEeeccc
Confidence 34455555666665544443
No 164
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=25.30 E-value=1.6e+02 Score=18.81 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhcc
Q 037109 30 LSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGK 69 (118)
Q Consensus 30 L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 69 (118)
+.-++..+..+++.+.+...+..+|+++-+...++..+.-
T Consensus 8 ~l~~~~~~~~~~~~~~~~~~s~~~G~~i~~~~~~~~~~~~ 47 (100)
T PF03899_consen 8 ILLAVLALVFFLFFGWPVALSFLLGGLISLLNFFLLARRV 47 (100)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666788888889999988888877766544
No 165
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=24.99 E-value=1.6e+02 Score=24.80 Aligned_cols=60 Identities=20% Similarity=0.001 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109 8 MVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 8 ay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
+.++..+..++...... --..+..++.++++.-++-|.+.....+|+.+. |+.+..-..+
T Consensus 203 g~~l~~~~~r~~~~~~~-~e~~~~~~l~i~l~~a~l~e~~gls~ilGAFla--Gl~ls~~~~~ 262 (397)
T COG0475 203 GRYLLPPLFRRVAKTES-SELFILFVLLLVLGAAYLAELLGLSMILGAFLA--GLLLSESEYR 262 (397)
T ss_pred HHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH--HHHhcccccc
Confidence 34555555555555432 234456677778888889999999999999765 8887665444
No 166
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=24.97 E-value=58 Score=23.20 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhc-cchhhhhhhc
Q 037109 57 LIVCGLYAVLWG-KGKEMKKQSQ 78 (118)
Q Consensus 57 lIl~Gv~l~~~~-~~k~~~~~~~ 78 (118)
++++.+|+...+ ++|++++.++
T Consensus 12 ~i~~i~yF~~iRPQkKr~K~~~~ 34 (109)
T PRK05886 12 LIMGGFMYFASRRQRKAMQATID 34 (109)
T ss_pred HHHHHHHHHHccHHHHHHHHHHH
Confidence 344444544433 3444444333
No 167
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=24.83 E-value=1.6e+02 Score=20.87 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=19.3
Q ss_pred HHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109 36 AVAASLILDEKLHLGSVLGATLIVCGLYAVL 66 (118)
Q Consensus 36 ~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 66 (118)
.++|.+.+++ -....++|..+++.|++.+.
T Consensus 75 if~G~l~~~~-~~~~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 75 IFLGTLCLGQ-SILSIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 4566666676 34455667777777777554
No 168
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=24.65 E-value=1.7e+02 Score=24.07 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=25.9
Q ss_pred hhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHH
Q 037109 25 SVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYA 64 (118)
Q Consensus 25 s~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l 64 (118)
++.....-++.++..+.++|.+++...++|.+. +.|+.+
T Consensus 155 al~al~~dv~~~l~~l~l~g~~l~~~~iaglLt-liG~sv 193 (297)
T PRK13021 155 ALFALVHDVIFVLAFFALTQMEFNLTVLAAVLA-ILGYSL 193 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHH-HHHHee
Confidence 334444456667777778899999888887554 456543
No 169
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=24.45 E-value=1.8e+02 Score=23.30 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=29.0
Q ss_pred hhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHH----HHHHHHHHHhccchh
Q 037109 24 VSVFTPLSVVAVAVAASLILDEKLHLGSVLGATL----IVCGLYAVLWGKGKE 72 (118)
Q Consensus 24 as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~l----Il~Gv~l~~~~~~k~ 72 (118)
+++..|+..+++.++|.++ |..+......|.-+ +++++.+-+|.+++.
T Consensus 139 ~~l~~y~~Wv~~t~iGa~~-G~~l~~~~~~GldFal~a~Fi~L~~~~~k~~~~ 190 (238)
T COG1296 139 VALLAYLYWVVGTLIGALL-GSLLPDPETIGLDFALPALFIVLVIPQFKRRKT 190 (238)
T ss_pred hHHHHHHHHHHHHHHHHHh-hhccCCHhhhhHHHHHHHHHHHHHHHHHhcchh
Confidence 4567788899999999874 33444444445544 444555555655443
No 170
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=24.24 E-value=2.1e+02 Score=22.92 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=31.8
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhC--ccch--hhhhhhHHHHHHHHHHHHh
Q 037109 21 PLFVSVFTPLSVVAVAVAASLILD--EKLH--LGSVLGATLIVCGLYAVLW 67 (118)
Q Consensus 21 p~~as~~~~L~PV~a~ilg~l~Lg--E~lt--~~~iiG~~lIl~Gv~l~~~ 67 (118)
..+...+.-+..+-++++|..+-. |... ....+|..+++.|+++..-
T Consensus 78 ~~~~~~~iiiatip~~v~G~~~~~~i~~~~~~~~~~v~~~Li~~g~lL~~~ 128 (259)
T PF02673_consen 78 DRRLLLLIIIATIPTGVVGLLFKDFIEALFFSSPLVVAIALIITGLLLWLA 128 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Confidence 345566666777778888877543 2222 4556899999999988553
No 171
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=24.17 E-value=1.8e+02 Score=20.55 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=10.7
Q ss_pred CeehhHHHHHHHHHHHhhcCc
Q 037109 1 GIVGSGLMVTMTSWCVHIRGP 21 (118)
Q Consensus 1 GI~~S~iay~l~~~ai~~~Gp 21 (118)
|+++|+++...-+..+...|.
T Consensus 69 GLlGTv~Gmi~~f~~l~~~~~ 89 (139)
T PF01618_consen 69 GLLGTVIGMIEAFQALAETGS 89 (139)
T ss_pred HHHHHHHHHHHHHHHHhcccC
Confidence 345555555555555554433
No 172
>PRK05978 hypothetical protein; Provisional
Probab=24.11 E-value=2.1e+02 Score=21.41 Aligned_cols=33 Identities=6% Similarity=-0.087 Sum_probs=18.3
Q ss_pred CccchhhhhhhHHHHHHHHHHHHhCccchhhhh
Q 037109 20 GPLFVSVFTPLSVVAVAVAASLILDEKLHLGSV 52 (118)
Q Consensus 20 Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~i 52 (118)
+|.+.++.+....++++++..-+.-++..|.++
T Consensus 70 gpAy~~i~ivg~ivv~~~l~~~~~~~pp~w~~~ 102 (148)
T PRK05978 70 LPAYLVIVIVGHIVVGGFMGTETTFNLPVWLHL 102 (148)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 455667666666666666655333344444433
No 173
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.53 E-value=1.6e+02 Score=21.69 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=14.2
Q ss_pred chhhhhhhHHHHHHHHHHHHhcc
Q 037109 47 LHLGSVLGATLIVCGLYAVLWGK 69 (118)
Q Consensus 47 lt~~~iiG~~lIl~Gv~l~~~~~ 69 (118)
......+|++++..|+.++..+-
T Consensus 35 ~~~s~~lg~~~lAlg~vL~~~g~ 57 (191)
T PF04156_consen 35 ALISFILGIALLALGVVLLSLGL 57 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777766777666554
No 174
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=23.47 E-value=85 Score=20.57 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=17.6
Q ss_pred hhhhhhHHHHHHHHHHHHhccc
Q 037109 49 LGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 49 ~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
+..++|.++++.|+.+..|...
T Consensus 1 ~~~~~G~~l~~~g~~l~~~~~~ 22 (106)
T PF04191_consen 1 WRFVLGLLLILAGIALAIWAFK 22 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999998877644
No 175
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=23.21 E-value=1.7e+02 Score=24.27 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHh-----CccchhhhhhhHHHHHHHHHHHHhccch
Q 037109 28 TPLSVVAVAVAASLIL-----DEKLHLGSVLGATLIVCGLYAVLWGKGK 71 (118)
Q Consensus 28 ~~L~PV~a~ilg~l~L-----gE~lt~~~iiG~~lIl~Gv~l~~~~~~k 71 (118)
.++.|+++.+.+.+++ .++.. .-+.+.++++.|+.+....++|
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~y~~~~~~ 437 (445)
T PRK11357 390 FGLMTTLAIASSLILVASTFVWAPIP-GLICAVIVIATGLPAYAFWAKR 437 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHhhhHHhheech
Confidence 4567777776665553 44322 1234666777776654444433
No 176
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=23.00 E-value=1.8e+02 Score=27.23 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=29.3
Q ss_pred cchhhhhhhHH--HHHHHHHHHHhCccchhhhhhhHHHHHHHHHH
Q 037109 22 LFVSVFTPLSV--VAVAVAASLILDEKLHLGSVLGATLIVCGLYA 64 (118)
Q Consensus 22 ~~as~~~~L~P--V~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l 64 (118)
...-+.+...| +++++++.++.|.+++...++|.++ ++|+..
T Consensus 887 ~~PliIm~~IPla~~G~~~~l~i~g~~l~~~s~iG~i~-L~GIvV 930 (1021)
T PF00873_consen 887 RQPLIIMLTIPLALIGVLLGLFITGQPLSFMSLIGIIA-LIGIVV 930 (1021)
T ss_dssp STHHHHHTTHHHHHHHHHHHHHHTTBEBSHHHHHHHHH-HHHHHH
T ss_pred eeeEEEEeccchhhHHHHHHHhhccccccccceehHHH-HHHHHH
Confidence 33334444444 5678999999999999999998654 455543
No 177
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=22.94 E-value=3.1e+02 Score=22.46 Aligned_cols=20 Identities=20% Similarity=0.551 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhccchhhhh
Q 037109 56 TLIVCGLYAVLWGKGKEMKK 75 (118)
Q Consensus 56 ~lIl~Gv~l~~~~~~k~~~~ 75 (118)
++.+.|+|-+.|.+-....+
T Consensus 204 vf~LvgLyr~C~k~dPg~p~ 223 (259)
T PF07010_consen 204 VFTLVGLYRMCWKTDPGTPE 223 (259)
T ss_pred HHHHHHHHHHhhcCCCCCcc
Confidence 67888999999987555443
No 178
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=22.93 E-value=1e+02 Score=25.55 Aligned_cols=12 Identities=25% Similarity=0.241 Sum_probs=5.7
Q ss_pred cCCCCCCCcccc
Q 037109 79 LVPAANTSKESE 90 (118)
Q Consensus 79 ~~~~~~~~~~~~ 90 (118)
+.|...++|.+|
T Consensus 437 ~~~~~~~~~~~~ 448 (455)
T TIGR00892 437 EREGARDKKDAE 448 (455)
T ss_pred hhcccccccccc
Confidence 444555555443
No 179
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=22.85 E-value=1.1e+02 Score=20.84 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHhccchh
Q 037109 53 LGATLIVCGLYAVLWGKGKE 72 (118)
Q Consensus 53 iG~~lIl~Gv~l~~~~~~k~ 72 (118)
++++.++.+.++..+++++-
T Consensus 78 v~~~~l~la~i~~~~~~~~l 97 (121)
T PF07332_consen 78 VAGLYLLLALILLLIGRRRL 97 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 180
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.78 E-value=91 Score=26.15 Aligned_cols=45 Identities=11% Similarity=-0.004 Sum_probs=36.3
Q ss_pred CccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHH
Q 037109 20 GPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYA 64 (118)
Q Consensus 20 Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l 64 (118)
.......|.+..|+...++|+.+-..-+...-+.+..-.+.|++.
T Consensus 98 P~~v~~~~~f~~Pv~lpiLG~~~GliYv~i~~~va~~~tlig~l~ 142 (311)
T COG3366 98 PTGVRHAFTFYAPVALPILGLELGLIYVGIRVLVALLKTLIGVLY 142 (311)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444688999999999999888888888888888888888744
No 181
>PF14897 EpsG: EpsG family
Probab=22.76 E-value=3.3e+02 Score=20.83 Aligned_cols=59 Identities=5% Similarity=-0.018 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHH
Q 037109 4 GSGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVL 66 (118)
Q Consensus 4 ~S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~ 66 (118)
.+.+.+.+..+.+++..... ....+++--.....+..+.-..+|.++.++++.|+....
T Consensus 72 ~~~i~~~~~~~~i~~~~~~~----~~~~~~~l~~~~~~~~~~~~~iRq~~A~~~~~~a~~~~~ 130 (330)
T PF14897_consen 72 ISFISLFLFFFFIKKYSKNY----PIFLSLFLFFSFFFFFYSFNQIRQSLAISFFLLALSYLY 130 (330)
T ss_pred HHHHHHHHHHHhHHHcccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777765 112222222334455566667788888888777765544
No 182
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=22.65 E-value=3.1e+02 Score=20.73 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhccchh---hhhhhccCCCCCCCcccceEEEeecCchHHHHHhhhcc
Q 037109 55 ATLIVCGLYAVLWGKGKE---MKKQSQLVPAANTSKESESIEISITSPNEEIKELNDSR 110 (118)
Q Consensus 55 ~~lIl~Gv~l~~~~~~k~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (118)
++..+.++.+..|++..+ +.++-.-++.+++++-++.... +++.++++..++
T Consensus 68 ~ial~nAvlLI~WA~YN~~RF~~eRR~~~~~l~~dElA~sF~l----~~e~i~qLr~~k 122 (153)
T PRK14584 68 AIAAFNAVLLIIWAKYNQVRFQVERRGHRPDLDDDELASSFAL----SPELIAQLKSGS 122 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCCCCChHHHHHHcCC----CHHHHHHHHhCC
Confidence 445556666666765322 2233344556666666665544 456666666543
No 183
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=22.63 E-value=1.4e+02 Score=22.07 Aligned_cols=19 Identities=26% Similarity=0.238 Sum_probs=8.9
Q ss_pred hhhhhhHHHH-HHHHHHHHh
Q 037109 25 SVFTPLSVVA-VAVAASLIL 43 (118)
Q Consensus 25 s~~~~L~PV~-a~ilg~l~L 43 (118)
.-.+||.-++ +++++..++
T Consensus 81 vYllPLl~li~ga~l~~~~~ 100 (154)
T PRK10862 81 VYMTPLVGLFLGAALFQLLF 100 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 3344555555 344444443
No 184
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=22.26 E-value=2.4e+02 Score=21.78 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=11.5
Q ss_pred eEEEeecCchHHHHHhhhc
Q 037109 91 SIEISITSPNEEIKELNDS 109 (118)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~ 109 (118)
...+++.-.++|+.+|.+.
T Consensus 148 ~s~i~v~ahrDEL~~L~~~ 166 (173)
T PF12046_consen 148 GSDITVRAHRDELIELQKE 166 (173)
T ss_pred cceEEEEEcHHHHHHHHHh
Confidence 4455555556777777653
No 185
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=21.68 E-value=2.8e+02 Score=20.33 Aligned_cols=10 Identities=40% Similarity=0.517 Sum_probs=3.9
Q ss_pred hHHHHHHHHH
Q 037109 54 GATLIVCGLY 63 (118)
Q Consensus 54 G~~lIl~Gv~ 63 (118)
|..++..|++
T Consensus 143 ~i~~~glGll 152 (181)
T PF08006_consen 143 GIGLFGLGLL 152 (181)
T ss_pred HHHHHHHHHH
Confidence 3333333433
No 186
>TIGR01156 cytb6/f_IV cytochrome b6/f complex subunit IV. This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene.
Probab=21.66 E-value=3.6e+02 Score=20.40 Aligned_cols=36 Identities=6% Similarity=-0.007 Sum_probs=19.3
Q ss_pred HHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhC
Q 037109 9 VTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILD 44 (118)
Q Consensus 9 y~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~Lg 44 (118)
|++|.+++-|.-|.+..-+..+..++..++.+-+++
T Consensus 80 YFl~~yaiLr~iP~kl~Gvl~m~~~i~~L~llPfld 115 (159)
T TIGR01156 80 YFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115 (159)
T ss_pred hhhHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 566667777776766554444443334444444444
No 187
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=21.59 E-value=73 Score=18.27 Aligned_cols=11 Identities=18% Similarity=0.060 Sum_probs=9.0
Q ss_pred hhhhhhHHHHH
Q 037109 25 SVFTPLSVVAV 35 (118)
Q Consensus 25 s~~~~L~PV~a 35 (118)
-+|.|++|+++
T Consensus 9 p~y~y~Ip~v~ 19 (33)
T TIGR03068 9 PAYIYAIPVAS 19 (33)
T ss_pred cchhhHHHHHH
Confidence 46889999888
No 188
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=21.34 E-value=2.9e+02 Score=21.06 Aligned_cols=58 Identities=9% Similarity=-0.036 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhcCccchhhhhh-hHHHHHHHHHHHHhCc-cchhhhhhhHHHHHHHHHHH
Q 037109 7 LMVTMTSWCVHIRGPLFVSVFTP-LSVVAVAVAASLILDE-KLHLGSVLGATLIVCGLYAV 65 (118)
Q Consensus 7 iay~l~~~ai~~~Gp~~as~~~~-L~PV~a~ilg~l~LgE-~lt~~~iiG~~lIl~Gv~l~ 65 (118)
-+|..|...-.... ++..+++| ++-+.....+.+|++. .+..+.++++.+-++.+.+.
T Consensus 63 Sa~lvW~~~~~~~~-~~~~~~ly~~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l~ 122 (161)
T COG3476 63 SAYLVWEKGPGQGT-SWLLMFLYLLQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLT 122 (161)
T ss_pred HHHHHHHHcCCCch-hHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Confidence 34555544433222 55666666 7778888999999998 88888888887766665553
No 189
>PF05661 DUF808: Protein of unknown function (DUF808); InterPro: IPR008526 This family consists of several bacterial proteins of unknown function.
Probab=21.28 E-value=95 Score=25.91 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHhc
Q 037109 52 VLGATLIVCGLYAVLWG 68 (118)
Q Consensus 52 iiG~~lIl~Gv~l~~~~ 68 (118)
.+--++++.|.|++.=+
T Consensus 86 ~itplLmlGG~yLcfEG 102 (295)
T PF05661_consen 86 AITPLLMLGGAYLCFEG 102 (295)
T ss_pred HHHHHHHHhHHHHHHhH
Confidence 34568889999998744
No 190
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=21.09 E-value=1.2e+02 Score=26.53 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=8.2
Q ss_pred HHhhhccCCCccC
Q 037109 104 KELNDSRKGDQVL 116 (118)
Q Consensus 104 ~~~~~~~~~~~~~ 116 (118)
-...|-++||.++
T Consensus 69 i~~~~l~~GDiv~ 81 (556)
T TIGR01525 69 VPVEELQVGDIVI 81 (556)
T ss_pred EEHHHCCCCCEEE
Confidence 3456667888653
No 191
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.08 E-value=42 Score=29.49 Aligned_cols=53 Identities=17% Similarity=0.075 Sum_probs=36.4
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhccchhhhhh--hccCCCCCCCcccceEEEeec
Q 037109 45 EKLHLGSVLGATLIVCGLYAVLWGKGKEMKKQ--SQLVPAANTSKESESIEISIT 97 (118)
Q Consensus 45 E~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~ 97 (118)
..-.+..++-.++++.++++..+.+.+.++++ +++.+.....|+-||++--+.
T Consensus 16 ~~d~~~~~iE~lLi~~~i~~~~rk~~~~~~~~lt~~eideLiedw~PEPLV~~~~ 70 (467)
T KOG1358|consen 16 WRDILHTIIETLLIVLVIILLLRKSYKIPVRPLTEQEIDELIEDWEPEPLVPPVP 70 (467)
T ss_pred cCChHHHHHHHHHHHHhhheeeeccCCCcccCCCHHHHHHHHhcCCCCCCCCCCc
Confidence 33348888899999999998887766555544 555556666777777765444
No 192
>PRK01821 hypothetical protein; Provisional
Probab=20.80 E-value=1.1e+02 Score=22.29 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCccch-------hhhhhhHHHHHHHHHH
Q 037109 34 AVAVAASLILDEKLH-------LGSVLGATLIVCGLYA 64 (118)
Q Consensus 34 ~a~ilg~l~LgE~lt-------~~~iiG~~lIl~Gv~l 64 (118)
++.++++.++||.+. +++++|+++.+..+..
T Consensus 15 l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L~~ 52 (133)
T PRK01821 15 FVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLLAL 52 (133)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHh
Confidence 567777778887654 6789999998887764
No 193
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=20.44 E-value=2.1e+02 Score=24.33 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=27.3
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHH
Q 037109 21 PLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLY 63 (118)
Q Consensus 21 p~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~ 63 (118)
+..++.......++.++.-+.++|-+++...+.|.++.+ |+.
T Consensus 272 ~gl~a~ial~~~v~~~l~~~~l~g~~l~l~siaglil~i-G~~ 313 (397)
T TIGR01129 272 FGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTI-GMA 313 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHh-hee
Confidence 344444555556666666667889999998888765544 443
No 194
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=20.19 E-value=2e+02 Score=26.20 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=19.9
Q ss_pred HHHHHHHHHHh-CccchhhhhhhHHHHHHHHHH
Q 037109 33 VAVAVAASLIL-DEKLHLGSVLGATLIVCGLYA 64 (118)
Q Consensus 33 V~a~ilg~l~L-gE~lt~~~iiG~~lIl~Gv~l 64 (118)
++.++...-++ |-+++...+.|.++.+ |+..
T Consensus 476 l~l~l~vmsll~G~tLtLpgIAGiILtI-GmaV 507 (604)
T PRK12933 476 MVCLFGLLALIPGAVLTLPGIAGLVLTV-GMAV 507 (604)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHHH-Hhhc
Confidence 33333333345 8999999888777766 6554
Done!